AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037141

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037141.t1 MTR_2g042900 96.047 253 7 1 1 250 1 253 0.0 498
MS.gene037141.t1 MTR_2g042900 84.766 256 6 2 1 223 1 256 8.66e-153 426
MS.gene037141.t1 MTR_4g124960 44.961 258 77 10 1 248 1 203 2.61e-48 158
MS.gene037141.t1 MTR_4g124960 44.934 227 69 8 1 226 1 172 4.79e-42 141
MS.gene037141.t1 MTR_5g013515 45.513 156 47 6 99 242 3 132 1.07e-34 121
MS.gene037141.t1 MTR_5g013530 45.638 149 39 4 105 242 18 135 3.78e-33 118
MS.gene037141.t1 MTR_5g013530 43.902 164 44 5 96 242 25 157 5.43e-33 118
MS.gene037141.t1 MTR_5g013520 45.946 148 39 5 105 242 11 127 8.50e-33 117
MS.gene037141.t1 MTR_8g021380 32.018 228 121 6 12 233 11 210 1.02e-22 93.2
MS.gene037141.t1 MTR_4g124950 36.196 163 57 6 69 231 1 116 1.05e-18 79.7
MS.gene037141.t1 MTR_8g021380 30.165 242 128 8 12 223 11 241 1.18e-15 74.7
MS.gene037141.t1 MTR_2g044910 32.031 128 62 5 109 230 15 123 2.54e-13 66.2
MS.gene037141.t1 MTR_2g044910 32.031 128 62 5 109 230 58 166 3.87e-13 66.6
MS.gene037141.t1 MTR_1g031930 30.460 174 67 4 107 237 111 273 3.45e-12 65.5
MS.gene037141.t1 MTR_1g031930 30.460 174 67 4 107 237 172 334 1.78e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037141.t1 AT1G74950 37.143 280 101 9 2 242 3 246 4.71e-43 146
MS.gene037141.t1 AT1G19180 37.037 270 119 8 1 242 1 247 9.94e-41 140
MS.gene037141.t1 AT1G19180 37.037 270 119 8 1 242 1 247 9.94e-41 140
MS.gene037141.t1 AT1G74950 36.863 255 92 8 2 223 3 221 8.79e-37 129
MS.gene037141.t1 AT1G72450 31.897 232 122 9 17 234 4 213 1.77e-26 103
MS.gene037141.t1 AT1G17380 30.279 251 130 7 1 241 1 216 3.18e-24 98.2
MS.gene037141.t1 AT1G19180 39.041 146 59 4 106 242 57 181 3.83e-22 90.5
MS.gene037141.t1 AT1G72450 30.317 221 118 9 17 223 4 202 1.61e-21 89.4
MS.gene037141.t1 AT1G17380 29.493 217 115 6 17 223 10 198 9.79e-19 82.4
MS.gene037141.t1 AT1G17380 33.803 142 60 5 105 236 65 182 2.09e-13 68.2
MS.gene037141.t1 AT5G20900 31.746 126 63 3 109 230 57 163 1.12e-11 62.4
MS.gene037141.t1 AT3G17860 33.544 158 70 7 108 234 144 297 5.56e-11 62.0
MS.gene037141.t1 AT3G17860 33.544 158 70 7 108 234 144 297 5.56e-11 62.0
MS.gene037141.t1 AT3G17860 33.544 158 70 7 108 234 177 330 5.75e-11 62.0
MS.gene037141.t1 AT3G17860 33.544 158 70 7 108 234 164 317 8.56e-11 61.6

Find 57 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAGCTCATGTGCTTTAT+TGG 0.107243 2.3:+47091081 None:intergenic
TTTATTGAGTCAATATATTA+AGG 0.231958 2.3:-47092472 MS.gene037141:CDS
AGCTTCGCTTCATCGGTTTC+TGG 0.246045 2.3:-47090738 MS.gene037141:CDS
GCCTTCATTTCCTCCTAATT+TGG 0.255924 2.3:-47090993 MS.gene037141:CDS
AGCGAAGCTTTCCTCATAAT+TGG 0.256396 2.3:+47090752 None:intergenic
GCTGGCTTATTAACTTGATA+TGG 0.264533 2.3:+47090538 None:intergenic
ACCGAAGTTCTGACCAAATT+AGG 0.285058 2.3:+47090980 None:intergenic
TCGGAATATTCAGAAGTTTC+CGG 0.324209 2.3:-47092549 MS.gene037141:CDS
ATTGTCAATTGTGCAGCTTT+AGG 0.328266 2.3:+47091145 None:intergenic
CTTCGCCGGTGGTTTGTTGC+CGG 0.328284 2.3:+47092530 None:intergenic
ACAAAAGAACCTTACAACTA+TGG 0.341905 2.3:-47091752 MS.gene037141:CDS
GAGTCAATATATTAAGGAAA+AGG 0.376605 2.3:-47092466 MS.gene037141:CDS
CCGGTGCCGGTGCCAGTACT+AGG 0.379925 2.3:+47090917 None:intergenic
TGCTTCAAAGATCTTTCTCT+TGG 0.389248 2.3:-47092441 MS.gene037141:CDS
CATGGTTGGAAACAAGTTCA+TGG 0.390560 2.3:+47091789 None:intergenic
AAGAAATTACCGCAAAGATT+AGG 0.403918 2.3:+47090860 None:intergenic
AGTCAATATATTAAGGAAAA+GGG 0.413916 2.3:-47092465 MS.gene037141:CDS
AGCTCATGTGCTTTATTGGC+AGG 0.443978 2.3:+47091085 None:intergenic
AATGATTTGCAGTGCTATCA+AGG 0.444008 2.3:-47091170 MS.gene037141:intron
CCTTCCAGACCTAATCTTTG+CGG 0.448657 2.3:-47090869 MS.gene037141:intron
TTCATTAATCGAGCCGGTGC+CGG 0.460250 2.3:+47090904 None:intergenic
ATTACCGCAAAGATTAGGTC+TGG 0.470927 2.3:+47090865 None:intergenic
GAGTCCATGTCATGGCTTGT+GGG 0.483230 2.3:-47090514 MS.gene037141:CDS
TCCTAATTTGGTCAGAACTT+CGG 0.497883 2.3:-47090981 MS.gene037141:CDS
TGAGGAAAGCTTCGCTTCAT+CGG 0.498790 2.3:-47090745 MS.gene037141:CDS
GCGCAGATCTGCCAATTATG+AGG 0.500927 2.3:-47090763 MS.gene037141:intron
TAGGTCTGGAAGGCACTTGA+AGG 0.506440 2.3:+47090879 None:intergenic
ACATGCAACACAGACCCTTC+TGG 0.507485 2.3:-47092414 MS.gene037141:intron
TCGGTTTCTGGAGAAGAGAA+AGG 0.512539 2.3:-47090726 MS.gene037141:CDS
CAAACCACCGGCGAAGTCAC+CGG 0.513459 2.3:-47092523 MS.gene037141:CDS
CATGAACTTGTTTCCAACCA+TGG 0.520010 2.3:-47091788 MS.gene037141:CDS
CAATAAAGCACATGAGCTCA+TGG 0.529438 2.3:-47091080 MS.gene037141:CDS
CGGTGCCGGTGCCAGTACTA+GGG 0.531615 2.3:+47090918 None:intergenic
TGAGCAAATCCATAGTTGTA+AGG 0.532508 2.3:+47091743 None:intergenic
ATTAACTTGATATGGTGCAT+TGG 0.537946 2.3:+47090546 None:intergenic
TGAGTCCATGTCATGGCTTG+TGG 0.539136 2.3:-47090515 MS.gene037141:CDS
GTGAACATCATCCCTAGTAC+TGG 0.540119 2.3:-47090929 MS.gene037141:CDS
GAATTGTTCAAAGCAGCTTG+TGG 0.542652 2.3:+47091718 None:intergenic
CCTAGTACTGGCACCGGCAC+CGG 0.542742 2.3:-47090917 MS.gene037141:CDS
TTCAACTATGTCTACCTCAT+CGG 0.558400 2.3:-47092568 None:intergenic
ATGTTCACAGTAGGAACGAT+TGG 0.560290 2.3:+47090944 None:intergenic
TGCACCCACAAGCCATGACA+TGG 0.562173 2.3:+47090510 None:intergenic
ACCAAATTAGGAGGAAATGA+AGG 0.565826 2.3:+47090992 None:intergenic
TTCTCCGGTGACTTCGCCGG+TGG 0.568647 2.3:+47092519 None:intergenic
AAGGTGTTCATTAATCGAGC+CGG 0.572295 2.3:+47090898 None:intergenic
AGCCATGACATGGACTCAGC+TGG 0.572954 2.3:+47090520 None:intergenic
AATTAGGAGGAAATGAAGGC+TGG 0.580229 2.3:+47090996 None:intergenic
ATCATCCCTAGTACTGGCAC+CGG 0.592342 2.3:-47090923 MS.gene037141:CDS
CCGCAAAGATTAGGTCTGGA+AGG 0.596635 2.3:+47090869 None:intergenic
TTCTGGAGAAGAGAAAGGAT+AGG 0.619484 2.3:-47090721 MS.gene037141:intron
GAAGTTCTGACCAAATTAGG+AGG 0.621959 2.3:+47090983 None:intergenic
ATGATTTGCAGTGCTATCAA+GGG 0.622638 2.3:-47091169 MS.gene037141:intron
AGTTTCCGGCAACAAACCAC+CGG 0.625545 2.3:-47092535 MS.gene037141:CDS
ATTAAGGTTCCGTACCAGAA+GGG 0.632538 2.3:+47092400 None:intergenic
CTAGGGATGATGTTCACAGT+AGG 0.634680 2.3:+47090935 None:intergenic
AGCCAGCTGAGTCCATGTCA+TGG 0.640187 2.3:-47090522 MS.gene037141:CDS
AACTTCTGAATATTCCGATG+AGG 0.677602 2.3:+47092554 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTATTTTTTAAAATT+TGG - chr2.3:47090742-47090761 MS.gene037141:CDS 0.0%
!! AAAAAAAAAAATAAACAACA+TGG + chr2.3:47090996-47091015 None:intergenic 10.0%
!! AAAAATTAATAATCAACTAA+TGG + chr2.3:47091827-47091846 None:intergenic 10.0%
!! TACAATTGAATAATTTAAAA+TGG + chr2.3:47090950-47090969 None:intergenic 10.0%
!!! AGTTAAAAAAATTAATTTGA+TGG - chr2.3:47091565-47091584 MS.gene037141:intron 10.0%
!!! ATTGTTATTATATACTAATT+AGG - chr2.3:47091085-47091104 MS.gene037141:CDS 10.0%
!!! ATTTGTTTTTTTTTTTTTGT+AGG - chr2.3:47091209-47091228 MS.gene037141:intron 10.0%
!!! TTTGTTTTTTTTTTTTTGTA+GGG - chr2.3:47091210-47091229 MS.gene037141:intron 10.0%
!! TTTATTGAGTCAATATATTA+AGG - chr2.3:47090581-47090600 MS.gene037141:intron 15.0%
!!! AATCTTTGAAATTTTTTTGT+GGG - chr2.3:47090715-47090734 MS.gene037141:intron 15.0%
!!! ATTTTTTTACAAACCTAATT+TGG + chr2.3:47091411-47091430 None:intergenic 15.0%
!!! TTTAAAATTTGGTATCTTAA+TGG - chr2.3:47090753-47090772 MS.gene037141:CDS 15.0%
!!! TTTTTTTTTCCTTTTTTGTA+AGG - chr2.3:47090893-47090912 MS.gene037141:CDS 15.0%
!! AGTCAATATATTAAGGAAAA+GGG - chr2.3:47090588-47090607 MS.gene037141:intron 20.0%
!! ATTTCATTTCATACCAAATT+AGG - chr2.3:47091395-47091414 MS.gene037141:intron 20.0%
!! GAAACAAAAAACGAAAAATT+CGG + chr2.3:47090683-47090702 None:intergenic 20.0%
!!! AAAAAATTAATTTGATGGAG+AGG - chr2.3:47091570-47091589 MS.gene037141:intron 20.0%
!!! AATTTTTCGTTTTTTGTTTC+TGG - chr2.3:47090683-47090702 MS.gene037141:intron 20.0%
!!! ATATATTAGTCTCTAATTGA+AGG + chr2.3:47091852-47091871 None:intergenic 20.0%
!!! ATTTTTCGTTTTTTGTTTCT+GGG - chr2.3:47090684-47090703 MS.gene037141:intron 20.0%
!!! CAATCTTTGAAATTTTTTTG+TGG - chr2.3:47090714-47090733 MS.gene037141:intron 20.0%
!!! CAATTGACAATGTTTTATAA+CGG - chr2.3:47091920-47091939 MS.gene037141:intron 20.0%
!!! CTTGTAAATGAACTATTTTT+TGG - chr2.3:47092379-47092398 MS.gene037141:intron 20.0%
! AATTTATGAGTGATGACAAA+TGG - chr2.3:47091432-47091451 MS.gene037141:intron 25.0%
! ATAGTTCAACCTTACAAAAA+AGG + chr2.3:47090905-47090924 None:intergenic 25.0%
! ATTATTCCTTTCTTCTTAGT+TGG - chr2.3:47090779-47090798 MS.gene037141:intron 25.0%
! ATTCTAGTACTTAAGAGTAA+CGG - chr2.3:47090816-47090835 MS.gene037141:intron 25.0%
! GAGTCAATATATTAAGGAAA+AGG - chr2.3:47090587-47090606 MS.gene037141:intron 25.0%
AACCATTGACACGTAAAATT+CGG - chr2.3:47092218-47092237 MS.gene037141:intron 30.0%
AAGAAATTACCGCAAAGATT+AGG + chr2.3:47092196-47092215 None:intergenic 30.0%
ACAAAAGAACCTTACAACTA+TGG - chr2.3:47091301-47091320 MS.gene037141:intron 30.0%
ATTTCACTCGCTAAATGTAA+CGG - chr2.3:47091666-47091685 MS.gene037141:intron 30.0%
CAAAATGAAGAAAACTCACT+TGG + chr2.3:47091360-47091379 None:intergenic 30.0%
CGAAAAATTCGGAGAAATTA+AGG + chr2.3:47090672-47090691 None:intergenic 30.0%
TATGAACCAACTAAGAAGAA+AGG + chr2.3:47090788-47090807 None:intergenic 30.0%
TGCTATTAGTCATTACTAAG+CGG + chr2.3:47091750-47091769 None:intergenic 30.0%
! ATTAACTTGATATGGTGCAT+TGG + chr2.3:47092510-47092529 None:intergenic 30.0%
! TTGTGTCAAATTGTTTTCCA+TGG + chr2.3:47091285-47091304 None:intergenic 30.0%
!! TTTTTAACTAGTTCCACCTA+GGG + chr2.3:47091554-47091573 None:intergenic 30.0%
!!! TTTTTTAACTAGTTCCACCT+AGG + chr2.3:47091555-47091574 None:intergenic 30.0%
AACTTCTGAATATTCCGATG+AGG + chr2.3:47090502-47090521 None:intergenic 35.0%
ACCAAATTAGGAGGAAATGA+AGG + chr2.3:47092064-47092083 None:intergenic 35.0%
ATTCGGATGACACGAAAAAT+TGG - chr2.3:47092235-47092254 MS.gene037141:intron 35.0%
ATTGTCAATTGTGCAGCTTT+AGG + chr2.3:47091911-47091930 None:intergenic 35.0%
TATCCTCTACAATTGCAGTA+TGG + chr2.3:47091709-47091728 None:intergenic 35.0%
TCCTAATTTGGTCAGAACTT+CGG - chr2.3:47092072-47092091 MS.gene037141:intron 35.0%
TCGGAATATTCAGAAGTTTC+CGG - chr2.3:47090504-47090523 MS.gene037141:CDS 35.0%
TGAGCAAATCCATAGTTGTA+AGG + chr2.3:47091313-47091332 None:intergenic 35.0%
TGCTTCAAAGATCTTTCTCT+TGG - chr2.3:47090612-47090631 MS.gene037141:intron 35.0%
! AATGATTTGCAGTGCTATCA+AGG - chr2.3:47091883-47091902 MS.gene037141:intron 35.0%
! ATCCGAATTTTACGTGTCAA+TGG + chr2.3:47092223-47092242 None:intergenic 35.0%
! ATGATTTGCAGTGCTATCAA+GGG - chr2.3:47091884-47091903 MS.gene037141:intron 35.0%
! CTCATGGCTTTTGCTAATAA+AGG - chr2.3:47091989-47092008 MS.gene037141:intron 35.0%
! GCTGGCTTATTAACTTGATA+TGG + chr2.3:47092518-47092537 None:intergenic 35.0%
! GTCAAATTGTTTTCCATGGT+TGG + chr2.3:47091281-47091300 None:intergenic 35.0%
! TTCGTGGAAATAACTTGTAG+AGG - chr2.3:47091515-47091534 MS.gene037141:intron 35.0%
!! TGAGAGAAAGTTGTTTTCTC+CGG + chr2.3:47090552-47090571 None:intergenic 35.0%
AATTAAGGTTCCGTACCAGA+AGG + chr2.3:47090657-47090676 None:intergenic 40.0%
AATTAGGAGGAAATGAAGGC+TGG + chr2.3:47092060-47092079 None:intergenic 40.0%
ACCTAGATCCTCTACAGATA+CGG - chr2.3:47091600-47091619 MS.gene037141:intron 40.0%
AGCGAAGCTTTCCTCATAAT+TGG + chr2.3:47092304-47092323 None:intergenic 40.0%
ATGTTCACAGTAGGAACGAT+TGG + chr2.3:47092112-47092131 None:intergenic 40.0%
ATTAAGGTTCCGTACCAGAA+GGG + chr2.3:47090656-47090675 None:intergenic 40.0%
ATTACCGCAAAGATTAGGTC+TGG + chr2.3:47092191-47092210 None:intergenic 40.0%
ATTAGTCATTACTAAGCGGC+TGG + chr2.3:47091746-47091765 None:intergenic 40.0%
CAATAAAGCACATGAGCTCA+TGG - chr2.3:47091973-47091992 MS.gene037141:intron 40.0%
CATGAGCTCATGTGCTTTAT+TGG + chr2.3:47091975-47091994 None:intergenic 40.0%
CATGGTTGGAAACAAGTTCA+TGG + chr2.3:47091267-47091286 None:intergenic 40.0%
GAATTGTTCAAAGCAGCTTG+TGG + chr2.3:47091338-47091357 None:intergenic 40.0%
GCCTTCATTTCCTCCTAATT+TGG - chr2.3:47092060-47092079 MS.gene037141:intron 40.0%
TTTCCACGAATTGACCCTTT+CGG + chr2.3:47091505-47091524 None:intergenic 40.0%
! AAGGTGTTCATTAATCGAGC+CGG + chr2.3:47092158-47092177 None:intergenic 40.0%
! ACCGAAGTTCTGACCAAATT+AGG + chr2.3:47092076-47092095 None:intergenic 40.0%
! CATGAACTTGTTTCCAACCA+TGG - chr2.3:47091265-47091284 MS.gene037141:intron 40.0%
! GAAGTTCTGACCAAATTAGG+AGG + chr2.3:47092073-47092092 None:intergenic 40.0%
! TTCTGGAGAAGAGAAAGGAT+AGG - chr2.3:47092332-47092351 MS.gene037141:intron 40.0%
ACCGTATCTGTAGAGGATCT+AGG + chr2.3:47091604-47091623 None:intergenic 45.0%
AGGATTTAGATCCTCTCCCT+AGG - chr2.3:47091535-47091554 MS.gene037141:intron 45.0%
ATCTGTAGAGGATCTAGGTG+TGG + chr2.3:47091599-47091618 None:intergenic 45.0%
ATTGGCAGATCTGCGCATAA+AGG + chr2.3:47092286-47092305 None:intergenic 45.0%
ATTTAGATCCTCTCCCTAGG+TGG - chr2.3:47091538-47091557 MS.gene037141:intron 45.0%
CCTTCCAGACCTAATCTTTG+CGG - chr2.3:47092184-47092203 MS.gene037141:intron 45.0%
CTAGGGATGATGTTCACAGT+AGG + chr2.3:47092121-47092140 None:intergenic 45.0%
GATCCTCTACAGATACGGTA+TGG - chr2.3:47091605-47091624 MS.gene037141:intron 45.0%
GCACCATACTGCAATTGTAG+AGG - chr2.3:47091703-47091722 MS.gene037141:intron 45.0%
GGAGAAGAGAAAGGATAGGT+AGG - chr2.3:47092336-47092355 MS.gene037141:intron 45.0%
GTGAACATCATCCCTAGTAC+TGG - chr2.3:47092124-47092143 MS.gene037141:intron 45.0%
TCTGTAGAGGATCTAGGTGT+GGG + chr2.3:47091598-47091617 None:intergenic 45.0%
TGAGGAAAGCTTCGCTTCAT+CGG - chr2.3:47092308-47092327 MS.gene037141:intron 45.0%
! AGCTCATGTGCTTTATTGGC+AGG + chr2.3:47091971-47091990 None:intergenic 45.0%
! TCGGTTTCTGGAGAAGAGAA+AGG - chr2.3:47092327-47092346 MS.gene037141:intron 45.0%
AACTAGTTCCACCTAGGGAG+AGG + chr2.3:47091549-47091568 None:intergenic 50.0%
ACATGCAACACAGACCCTTC+TGG - chr2.3:47090639-47090658 MS.gene037141:intron 50.0%
ACGAATTGACCCTTTCGGCA+AGG + chr2.3:47091500-47091519 None:intergenic 50.0%
AGTTTCCGGCAACAAACCAC+CGG - chr2.3:47090518-47090537 MS.gene037141:CDS 50.0%
CAACACAGACCCTTCTGGTA+CGG - chr2.3:47090644-47090663 MS.gene037141:intron 50.0%
CCGCAAAGATTAGGTCTGGA+AGG + chr2.3:47092187-47092206 None:intergenic 50.0%
GCACCATACCGTATCTGTAG+AGG + chr2.3:47091611-47091630 None:intergenic 50.0%
GCGCAGATCTGCCAATTATG+AGG - chr2.3:47092290-47092309 MS.gene037141:intron 50.0%
TGAGTCCATGTCATGGCTTG+TGG - chr2.3:47092538-47092557 MS.gene037141:CDS 50.0%
TTCATTAATCGAGCCGGTGC+CGG + chr2.3:47092152-47092171 None:intergenic 50.0%
TTGCCGAAAGGGTCAATTCG+TGG - chr2.3:47091499-47091518 MS.gene037141:intron 50.0%
! GAGTCCATGTCATGGCTTGT+GGG - chr2.3:47092539-47092558 MS.gene037141:CDS 50.0%
! TCATTACTAAGCGGCTGGCT+CGG + chr2.3:47091741-47091760 None:intergenic 50.0%
!! AGCTTCGCTTCATCGGTTTC+TGG - chr2.3:47092315-47092334 MS.gene037141:intron 50.0%
!! ATCATCCCTAGTACTGGCAC+CGG - chr2.3:47092130-47092149 MS.gene037141:intron 50.0%
!! TAGGTCTGGAAGGCACTTGA+AGG + chr2.3:47092177-47092196 None:intergenic 50.0%
AGCCAGCTGAGTCCATGTCA+TGG - chr2.3:47092531-47092550 MS.gene037141:CDS 55.0%
AGCCATGACATGGACTCAGC+TGG + chr2.3:47092536-47092555 None:intergenic 55.0%
ATAGCTGTCGCCTTGCCGAA+AGG - chr2.3:47091487-47091506 MS.gene037141:intron 55.0%
TAGCTGTCGCCTTGCCGAAA+GGG - chr2.3:47091488-47091507 MS.gene037141:intron 55.0%
TATCGTCACGCTAGCCGCTA+AGG + chr2.3:47091468-47091487 None:intergenic 55.0%
TGCACCCACAAGCCATGACA+TGG + chr2.3:47092546-47092565 None:intergenic 55.0%
! GTTTTCTCCGGTGACTTCGC+CGG + chr2.3:47090540-47090559 None:intergenic 55.0%
ATGGCGAGTGCGAGCCTTAG+CGG - chr2.3:47091451-47091470 MS.gene037141:intron 60.0%
CAAACCACCGGCGAAGTCAC+CGG - chr2.3:47090530-47090549 MS.gene037141:CDS 60.0%
!! CTTCGCCGGTGGTTTGTTGC+CGG + chr2.3:47090526-47090545 None:intergenic 60.0%
TTCTCCGGTGACTTCGCCGG+TGG + chr2.3:47090537-47090556 None:intergenic 65.0%
!! CCTAGTACTGGCACCGGCAC+CGG - chr2.3:47092136-47092155 MS.gene037141:intron 65.0%
!! CGGTGCCGGTGCCAGTACTA+GGG + chr2.3:47092138-47092157 None:intergenic 65.0%
!! CCGGTGCCGGTGCCAGTACT+AGG + chr2.3:47092139-47092158 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 47090492 47092583 47090492 ID=MS.gene037141
chr2.3 mRNA 47090492 47092583 47090492 ID=MS.gene037141.t1;Parent=MS.gene037141
chr2.3 exon 47092415 47092583 47092415 ID=MS.gene037141.t1.exon1;Parent=MS.gene037141.t1
chr2.3 CDS 47092415 47092583 47092415 ID=cds.MS.gene037141.t1;Parent=MS.gene037141.t1
chr2.3 exon 47091715 47091844 47091715 ID=MS.gene037141.t1.exon2;Parent=MS.gene037141.t1
chr2.3 CDS 47091715 47091844 47091715 ID=cds.MS.gene037141.t1;Parent=MS.gene037141.t1
chr2.3 exon 47090870 47091180 47090870 ID=MS.gene037141.t1.exon3;Parent=MS.gene037141.t1
chr2.3 CDS 47090870 47091180 47090870 ID=cds.MS.gene037141.t1;Parent=MS.gene037141.t1
chr2.3 exon 47090722 47090779 47090722 ID=MS.gene037141.t1.exon4;Parent=MS.gene037141.t1
chr2.3 CDS 47090722 47090779 47090722 ID=cds.MS.gene037141.t1;Parent=MS.gene037141.t1
chr2.3 exon 47090492 47090576 47090492 ID=MS.gene037141.t1.exon5;Parent=MS.gene037141.t1
chr2.3 CDS 47090492 47090576 47090492 ID=cds.MS.gene037141.t1;Parent=MS.gene037141.t1
Gene Sequence

>MS.gene037141

ATGTCTACCTCATCGGAATATTCAGAAGTTTCCGGCAACAAACCACCGGCGAAGTCACCGGAGAAAACAACTTTCTCTCAAACATGTAGTTTATTGAGTCAATATATTAAGGAAAAGGGTTGCTTCAAAGATCTTTCTCTTGGTATCACATGCAACACAGACCCTTCTGGTACGGAACCTTAATTTCTCCGAATTTTTCGTTTTTTGTTTCTGGGTTTTGTTCAATCTTTGAAATTTTTTTGTGGGTGTGATTAATTATTTTTTAAAATTTGGTATCTTAATGGTTAATTATTCCTTTCTTCTTAGTTGGTTCATAATTATTAAATTCTAGTACTTAAGAGTAACGGTTAATTTGTGTCTATAGAGTAGACTATCTATATTTGTTCATTTATTTTTGTTAATTTTTTTTTCCTTTTTTGTAAGGTTGAACTATATCTAAAATTTTCAAATATTTGCCATTTTAAATTATTCAATTGTATGTTGTTTATTTTTATTTTGAATCCATGTTGTTTATTTTTTTTTTTTTTGAGACTTTTAAAATTCATAGATCTAATTTCTAGCTCTAATTAATAGATAATTTGTTCATAATTCTAATTGTTATTATATACTAATTAGGTTGTTAAATTTGATAAGATTGTTATCTTGTTGTATAATTTTATTTGTTTTGTTAATTTTGTTAAATATTTTTTTTTTGTGTAATATTGTTTGTTTTTCTAAATTTGTTTTTTTTTTTTTGTAGGGTCTTCTGAGACTTCTTCTCAATCTGCAACAACCATGAACTTGTTTCCAACCATGGAAAACAATTTGACACAAAAGAACCTTACAACTATGGATTTGCTCACTCCACAAGCTGCTTTGAACAATTCCAAGTGAGTTTTCTTCATTTTGTTCTGATTTCAATTAATTTCATTTCATACCAAATTAGGTTTGTAAAAAAATTAATTTATGAGTGATGACAAATGGCGAGTGCGAGCCTTAGCGGCTAGCGTGACGATATAGCTGTCGCCTTGCCGAAAGGGTCAATTCGTGGAAATAACTTGTAGAGGATTTAGATCCTCTCCCTAGGTGGAACTAGTTAAAAAAATTAATTTGATGGAGAGGATCCCACACCTAGATCCTCTACAGATACGGTATGGTGCTACATCTGTAAGAACGTTATATTTAGAGAGATCAAATTTCACTCGCTAAATGTAACGGTCGCTACAGCTGCAGCACCATACTGCAATTGTAGAGGATAAGTTTTGCACCGAGCCAGCCGCTTAGTAATGACTAATAGCAATTTATAAATATTGTGCTGATTTAATAATCTCGATATAGTTCTAGATATCAAAACCATTAGTTGATTATTAATTTTTTTCCTTCAATTAGAGACTAATATATGATGTTGTATGAATGATTTGCAGTGCTATCAAGGGACCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTTATTGTATTCGATGATTTTCCTGCCAATAAAGCACATGAGCTCATGGCTTTTGCTAATAAAGGAATCTCTCAAAGTCAGAACAATTCTGTGTACACTTACACACAGAGCCAGCCTTCATTTCCTCCTAATTTGGTCAGAACTTCGGTTAACACAACAGCTCCAATCGTTCCTACTGTGAACATCATCCCTAGTACTGGCACCGGCACCGGCTCGATTAATGAACACCTTCAAGTGCCTTCCAGACCTAATCTTTGCGGTAATTTCTTGAAACCATTGACACGTAAAATTCGGATGACACGAAAAATTGGATCATGTTTTTCTGATCATGAATTTCCTTTATGCGCAGATCTGCCAATTATGAGGAAAGCTTCGCTTCATCGGTTTCTGGAGAAGAGAAAGGATAGGTAGGCACTCTCGATTAAATTAAAACTTGTAAATGAACTATTTTTTGGTGTATTGTTTATTTTTTACATCTTTTCTAACTTAGCTTGTTGATCAAGTATTTTTGCTGAGATAATAATAATTTGTTTCATTGTTGTGTATTTACAGAATTGCTGCCAATGCACCATATCAAGTTAATAAGCCAGCTGAGTCCATGTCATGGCTTGTGGGTGCAAAATCAACTCAAATTTGA
Protein sequence

>MS.gene037141.t1

MSTSSEYSEVSGNKPPAKSPEKTTFSQTCSLLSQYIKEKGCFKDLSLGITCNTDPSGSSETSSQSATTMNLFPTMENNLTQKNLTTMDLLTPQAALNNSNAIKGPKAAQLTMFYNGQVIVFDDFPANKAHELMAFANKGISQSQNNSVYTYTQSQPSFPPNLVRTSVNTTAPIVPTVNIIPSTGTGTGSINEHLQVPSRPNLCDLPIMRKASLHRFLEKRKDRIAANAPYQVNKPAESMSWLVGAKSTQI