Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037158.t1 | XP_003595317.2 | 93.5 | 728 | 47 | 0 | 1 | 728 | 1 | 728 | 0.00E+00 | 1280.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037158.t1 | Q9FT72 | 58.9 | 717 | 269 | 9 | 5 | 713 | 1 | 699 | 2.8e-222 | 773.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037158.t1 | G7IGG6 | 93.5 | 728 | 47 | 0 | 1 | 728 | 1 | 728 | 0.0e+00 | 1280.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene037158 | MS.gene041376 | PPI |
MS.gene43653 | MS.gene037158 | PPI |
MS.gene037158 | MS.gene036674 | PPI |
MS.gene037158 | MS.gene02437 | PPI |
MS.gene40915 | MS.gene037158 | PPI |
MS.gene037158 | MS.gene58223 | PPI |
MS.gene013292 | MS.gene037158 | PPI |
MS.gene049251 | MS.gene037158 | PPI |
MS.gene037158 | MS.gene013293 | PPI |
MS.gene64679 | MS.gene037158 | PPI |
MS.gene037158 | MS.gene57987 | PPI |
MS.gene037158 | MS.gene010536 | PPI |
MS.gene06375 | MS.gene037158 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037158.t1 | MTR_2g042440 | 97.115 | 728 | 21 | 0 | 1 | 728 | 1 | 728 | 0.0 | 1476 |
MS.gene037158.t1 | MTR_2g042440 | 96.978 | 728 | 21 | 1 | 1 | 728 | 1 | 727 | 0.0 | 1470 |
MS.gene037158.t1 | MTR_1g083840 | 43.204 | 412 | 215 | 8 | 38 | 440 | 197 | 598 | 7.67e-108 | 341 |
MS.gene037158.t1 | MTR_2g006440 | 41.372 | 452 | 228 | 9 | 13 | 440 | 377 | 815 | 1.65e-101 | 337 |
MS.gene037158.t1 | MTR_5g026590 | 38.497 | 439 | 213 | 11 | 38 | 456 | 85 | 486 | 2.09e-91 | 300 |
MS.gene037158.t1 | MTR_3g063040 | 39.130 | 437 | 227 | 12 | 28 | 454 | 2 | 409 | 1.13e-90 | 303 |
MS.gene037158.t1 | MTR_8g080160 | 40.496 | 363 | 192 | 9 | 26 | 380 | 260 | 606 | 3.87e-60 | 218 |
MS.gene037158.t1 | MTR_1g083250 | 38.182 | 220 | 119 | 5 | 33 | 242 | 155 | 367 | 2.20e-42 | 163 |
MS.gene037158.t1 | MTR_1g083250 | 41.667 | 108 | 62 | 1 | 260 | 366 | 504 | 611 | 1.18e-17 | 87.8 |
MS.gene037158.t1 | MTR_1g083250 | 37.727 | 220 | 120 | 4 | 33 | 242 | 155 | 367 | 5.90e-42 | 164 |
MS.gene037158.t1 | MTR_1g083250 | 31.839 | 223 | 132 | 5 | 260 | 477 | 504 | 711 | 9.00e-22 | 101 |
MS.gene037158.t1 | MTR_1g083250 | 38.182 | 220 | 119 | 5 | 33 | 242 | 155 | 367 | 8.97e-42 | 164 |
MS.gene037158.t1 | MTR_1g083250 | 31.839 | 223 | 132 | 5 | 260 | 477 | 504 | 711 | 5.67e-22 | 102 |
MS.gene037158.t1 | MTR_6g007530 | 61.468 | 109 | 42 | 0 | 212 | 320 | 55 | 163 | 3.08e-37 | 137 |
MS.gene037158.t1 | MTR_7g076830 | 26.519 | 362 | 217 | 12 | 15 | 355 | 139 | 472 | 4.39e-18 | 88.6 |
MS.gene037158.t1 | MTR_7g076800 | 26.519 | 362 | 217 | 12 | 15 | 355 | 137 | 470 | 5.62e-18 | 88.2 |
MS.gene037158.t1 | MTR_7g076820 | 25.967 | 362 | 219 | 11 | 15 | 355 | 146 | 479 | 6.04e-18 | 88.2 |
MS.gene037158.t1 | MTR_7g109720 | 24.850 | 334 | 220 | 9 | 39 | 355 | 250 | 569 | 1.20e-17 | 87.8 |
MS.gene037158.t1 | MTR_2g100230 | 24.412 | 340 | 236 | 11 | 39 | 366 | 114 | 444 | 1.41e-16 | 83.6 |
MS.gene037158.t1 | MTR_3g467550 | 26.039 | 361 | 221 | 15 | 23 | 355 | 120 | 462 | 4.01e-16 | 82.4 |
MS.gene037158.t1 | MTR_6g005550 | 24.863 | 366 | 213 | 14 | 46 | 379 | 190 | 525 | 1.07e-15 | 81.6 |
MS.gene037158.t1 | MTR_3g467550 | 26.184 | 359 | 219 | 15 | 25 | 355 | 91 | 431 | 1.18e-15 | 80.9 |
MS.gene037158.t1 | MTR_4g105100 | 24.484 | 339 | 239 | 10 | 38 | 366 | 219 | 550 | 1.48e-15 | 80.9 |
MS.gene037158.t1 | MTR_2g007000 | 20.891 | 359 | 225 | 10 | 46 | 372 | 529 | 860 | 1.66e-12 | 71.6 |
MS.gene037158.t1 | MTR_3g449250 | 23.823 | 361 | 233 | 10 | 46 | 384 | 115 | 455 | 1.89e-12 | 70.9 |
MS.gene037158.t1 | MTR_3g467550 | 25.648 | 347 | 212 | 15 | 23 | 341 | 120 | 448 | 2.04e-12 | 70.5 |
MS.gene037158.t1 | MTR_3g449250 | 23.823 | 361 | 233 | 10 | 46 | 384 | 115 | 455 | 2.61e-12 | 70.5 |
MS.gene037158.t1 | MTR_2g032630 | 22.778 | 360 | 224 | 11 | 39 | 370 | 514 | 847 | 3.59e-12 | 70.5 |
MS.gene037158.t1 | MTR_6g033070 | 25.797 | 345 | 205 | 13 | 39 | 355 | 158 | 479 | 5.29e-12 | 69.3 |
MS.gene037158.t1 | MTR_2g438110 | 21.038 | 366 | 249 | 12 | 23 | 370 | 37 | 380 | 1.37e-11 | 67.4 |
MS.gene037158.t1 | MTR_5g090120 | 24.119 | 369 | 228 | 15 | 46 | 387 | 106 | 449 | 5.12e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037158.t1 | AT4G35740 | 62.188 | 722 | 237 | 11 | 5 | 713 | 1 | 699 | 0.0 | 880 |
MS.gene037158.t1 | AT4G35740 | 60.287 | 627 | 215 | 10 | 100 | 713 | 1 | 606 | 0.0 | 732 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 85 | 475 | 4.71e-106 | 333 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 85 | 475 | 4.71e-106 | 333 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 85 | 475 | 1.19e-105 | 334 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 85 | 475 | 3.51e-105 | 333 |
MS.gene037158.t1 | AT3G05740 | 42.233 | 412 | 219 | 8 | 38 | 440 | 117 | 518 | 4.47e-105 | 331 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 85 | 475 | 5.64e-105 | 335 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 85 | 475 | 9.34e-105 | 336 |
MS.gene037158.t1 | AT3G05740 | 42.233 | 412 | 219 | 8 | 38 | 440 | 202 | 603 | 3.72e-104 | 331 |
MS.gene037158.t1 | AT1G31360 | 42.787 | 409 | 210 | 7 | 38 | 440 | 119 | 509 | 4.03e-104 | 335 |
MS.gene037158.t1 | AT1G10930 | 41.889 | 413 | 227 | 6 | 38 | 440 | 449 | 858 | 1.12e-99 | 333 |
MS.gene037158.t1 | AT1G31360 | 41.848 | 368 | 190 | 7 | 79 | 440 | 1 | 350 | 1.77e-86 | 284 |
MS.gene037158.t1 | AT1G27880 | 38.630 | 365 | 205 | 6 | 26 | 382 | 253 | 606 | 8.35e-59 | 214 |
MS.gene037158.t1 | AT1G27880 | 38.630 | 365 | 205 | 6 | 26 | 382 | 253 | 606 | 8.52e-59 | 214 |
MS.gene037158.t1 | AT5G27680 | 42.601 | 223 | 105 | 7 | 33 | 242 | 29 | 241 | 1.66e-44 | 171 |
MS.gene037158.t1 | AT5G27680 | 37.705 | 183 | 100 | 5 | 266 | 446 | 371 | 541 | 1.59e-23 | 106 |
MS.gene037158.t1 | AT5G27680 | 42.601 | 223 | 105 | 7 | 33 | 242 | 159 | 371 | 1.98e-44 | 172 |
MS.gene037158.t1 | AT5G27680 | 42.601 | 223 | 105 | 7 | 33 | 242 | 159 | 371 | 2.65e-44 | 171 |
MS.gene037158.t1 | AT5G27680 | 37.705 | 183 | 100 | 5 | 266 | 446 | 501 | 671 | 1.65e-23 | 107 |
MS.gene037158.t1 | AT5G27680 | 42.601 | 223 | 105 | 7 | 33 | 242 | 159 | 371 | 2.65e-44 | 171 |
MS.gene037158.t1 | AT5G27680 | 37.705 | 183 | 100 | 5 | 266 | 446 | 501 | 671 | 1.65e-23 | 107 |
MS.gene037158.t1 | AT5G27680 | 42.601 | 223 | 105 | 7 | 33 | 242 | 159 | 371 | 2.65e-44 | 171 |
MS.gene037158.t1 | AT5G27680 | 37.705 | 183 | 100 | 5 | 266 | 446 | 501 | 671 | 1.65e-23 | 107 |
MS.gene037158.t1 | AT5G27680 | 42.601 | 223 | 105 | 7 | 33 | 242 | 159 | 371 | 2.65e-44 | 171 |
MS.gene037158.t1 | AT5G27680 | 37.705 | 183 | 100 | 5 | 266 | 446 | 501 | 671 | 1.65e-23 | 107 |
MS.gene037158.t1 | AT4G00660 | 25.967 | 362 | 219 | 11 | 15 | 355 | 128 | 461 | 3.66e-19 | 92.0 |
MS.gene037158.t1 | AT4G00660 | 25.967 | 362 | 219 | 11 | 15 | 355 | 128 | 461 | 3.66e-19 | 92.0 |
MS.gene037158.t1 | AT1G55150 | 26.121 | 379 | 244 | 14 | 39 | 396 | 118 | 481 | 3.88e-19 | 91.7 |
MS.gene037158.t1 | AT1G55150 | 26.121 | 379 | 244 | 14 | 39 | 396 | 143 | 506 | 5.80e-19 | 91.3 |
MS.gene037158.t1 | AT5G14610 | 26.099 | 364 | 211 | 15 | 46 | 379 | 187 | 522 | 8.97e-16 | 81.6 |
MS.gene037158.t1 | AT5G14610 | 26.099 | 364 | 211 | 15 | 46 | 379 | 187 | 522 | 9.46e-16 | 81.6 |
MS.gene037158.t1 | AT5G14610 | 26.099 | 364 | 211 | 15 | 46 | 379 | 195 | 530 | 1.08e-15 | 81.6 |
MS.gene037158.t1 | AT5G14610 | 25.686 | 401 | 229 | 17 | 38 | 397 | 38 | 410 | 3.88e-15 | 79.3 |
MS.gene037158.t1 | AT5G14610 | 25.686 | 401 | 229 | 17 | 38 | 397 | 38 | 410 | 3.88e-15 | 79.3 |
MS.gene037158.t1 | AT5G14610 | 26.099 | 364 | 211 | 15 | 46 | 379 | 255 | 590 | 4.11e-15 | 79.7 |
MS.gene037158.t1 | AT2G45810 | 25.549 | 364 | 218 | 12 | 15 | 355 | 151 | 484 | 5.10e-15 | 79.0 |
MS.gene037158.t1 | AT3G01540 | 24.872 | 390 | 236 | 14 | 13 | 370 | 146 | 510 | 5.27e-15 | 79.3 |
MS.gene037158.t1 | AT3G01540 | 24.872 | 390 | 236 | 14 | 13 | 370 | 146 | 510 | 5.27e-15 | 79.3 |
MS.gene037158.t1 | AT3G01540 | 24.872 | 390 | 236 | 14 | 13 | 370 | 146 | 510 | 5.27e-15 | 79.3 |
MS.gene037158.t1 | AT3G01540 | 24.872 | 390 | 236 | 14 | 13 | 370 | 146 | 510 | 7.18e-15 | 79.0 |
MS.gene037158.t1 | AT3G61240 | 24.725 | 364 | 221 | 11 | 15 | 355 | 121 | 454 | 2.55e-14 | 76.6 |
MS.gene037158.t1 | AT3G61240 | 24.725 | 364 | 221 | 11 | 15 | 355 | 121 | 454 | 2.55e-14 | 76.6 |
MS.gene037158.t1 | AT2G47330 | 24.148 | 352 | 238 | 9 | 20 | 355 | 228 | 566 | 9.06e-14 | 75.5 |
MS.gene037158.t1 | AT5G63120 | 24.384 | 365 | 242 | 11 | 38 | 382 | 183 | 533 | 1.06e-13 | 75.1 |
MS.gene037158.t1 | AT3G19760 | 22.346 | 358 | 237 | 11 | 33 | 370 | 46 | 382 | 1.02e-12 | 71.2 |
MS.gene037158.t1 | AT3G53110 | 24.606 | 317 | 194 | 14 | 67 | 355 | 141 | 440 | 5.64e-12 | 69.3 |
MS.gene037158.t1 | AT1G51380 | 25.132 | 378 | 232 | 13 | 32 | 384 | 32 | 383 | 7.44e-12 | 68.6 |
MS.gene037158.t1 | AT4G33370 | 23.824 | 340 | 208 | 12 | 46 | 355 | 123 | 441 | 1.06e-11 | 68.6 |
MS.gene037158.t1 | AT1G20920 | 20.787 | 356 | 225 | 12 | 46 | 370 | 555 | 884 | 1.31e-11 | 68.9 |
MS.gene037158.t1 | AT1G20920 | 20.787 | 356 | 225 | 12 | 46 | 370 | 555 | 884 | 1.31e-11 | 68.9 |
MS.gene037158.t1 | AT1G20920 | 20.787 | 356 | 225 | 12 | 46 | 370 | 555 | 884 | 1.31e-11 | 68.9 |
MS.gene037158.t1 | AT1G20920 | 20.787 | 356 | 225 | 12 | 46 | 370 | 555 | 884 | 1.31e-11 | 68.9 |
MS.gene037158.t1 | AT1G20920 | 20.787 | 356 | 225 | 12 | 46 | 370 | 555 | 884 | 1.31e-11 | 68.9 |
MS.gene037158.t1 | AT1G20920 | 20.787 | 356 | 225 | 12 | 46 | 370 | 555 | 884 | 1.31e-11 | 68.9 |
MS.gene037158.t1 | AT3G06480 | 23.662 | 355 | 227 | 12 | 39 | 370 | 454 | 787 | 1.80e-11 | 68.6 |
MS.gene037158.t1 | AT1G20920 | 20.112 | 358 | 229 | 11 | 46 | 372 | 217 | 548 | 7.46e-11 | 66.2 |
MS.gene037158.t1 | AT3G02065 | 24.863 | 366 | 215 | 15 | 39 | 371 | 129 | 467 | 8.66e-11 | 65.5 |
MS.gene037158.t1 | AT3G02065 | 24.863 | 366 | 215 | 15 | 39 | 371 | 129 | 467 | 8.66e-11 | 65.5 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCCTGGGGTCATGATTTC+AGG | 0.089297 | 2.3:+47441349 | MS.gene037158:CDS |
GCTATTCAAGCTGTGCTTTC+AGG | 0.158697 | 2.3:+47439676 | MS.gene037158:CDS |
GATGGGATTGTTTCTGTTAT+AGG | 0.205590 | 2.3:-47448593 | None:intergenic |
AAACTTGGTTGCCAGAAATT+TGG | 0.208689 | 2.3:+47446338 | MS.gene037158:CDS |
CTGAGTGCTGTCAGCCTTAA+TGG | 0.220317 | 2.3:+47440505 | MS.gene037158:intron |
TGAAAGATCCTCCAAATTTC+TGG | 0.227165 | 2.3:-47446349 | None:intergenic |
AAATTTCTGGCAACCAAGTT+TGG | 0.240521 | 2.3:-47446336 | None:intergenic |
ATCTGATAGACTCAAATCTA+TGG | 0.244209 | 2.3:+47442986 | MS.gene037158:CDS |
AAAATAATTCTCGAGAGTTT+TGG | 0.244369 | 2.3:+47446138 | MS.gene037158:CDS |
AGGCACATTGCATCTCTTCC+TGG | 0.272174 | 2.3:+47441334 | MS.gene037158:intron |
GAAAATTATTCACCTATTAA+AGG | 0.285723 | 2.3:-47440376 | None:intergenic |
CAGCACAAGAAATGCCTCTT+TGG | 0.288079 | 2.3:-47443076 | None:intergenic |
ATTCATGAGGACCTTGGTTC+TGG | 0.290011 | 2.3:+47441114 | MS.gene037158:CDS |
CTTGTTGTTTGTCCTTTAAT+AGG | 0.293811 | 2.3:+47440364 | MS.gene037158:CDS |
GAAAGCAGTCAGGGACATTC+TGG | 0.303515 | 2.3:-47445974 | None:intergenic |
TGACCTTCATAATATATATT+AGG | 0.322937 | 2.3:-47442448 | None:intergenic |
GATGAATGCTACAAGAAATA+TGG | 0.330482 | 2.3:+47448359 | MS.gene037158:CDS |
GAGGACAGTTATCTGAATTC+TGG | 0.334408 | 2.3:+47446929 | MS.gene037158:CDS |
ATATTTATTCAGGACTGAAT+TGG | 0.335967 | 2.3:+47448313 | MS.gene037158:intron |
GGCACATTGCATCTCTTCCT+GGG | 0.348162 | 2.3:+47441335 | MS.gene037158:intron |
CCTGATTGTACTTGCAACTT+TGG | 0.349341 | 2.3:-47448408 | None:intergenic |
CAGTGGGAACAAGAAGAAAT+TGG | 0.352430 | 2.3:+47439573 | MS.gene037158:CDS |
AAGGTTCTTAGATGGCATTT+TGG | 0.353399 | 2.3:+47439622 | MS.gene037158:CDS |
GTAGTTGCCACTGTTGCTTT+TGG | 0.361844 | 2.3:+47443798 | MS.gene037158:CDS |
AGTTCTACTGATGCAATTGA+TGG | 0.365486 | 2.3:+47446907 | MS.gene037158:intron |
GTATTAAAAGAACTTTCTAT+TGG | 0.385631 | 2.3:-47448623 | None:intergenic |
CAATTTCTTCTTGTTCCCAC+TGG | 0.388715 | 2.3:-47439572 | None:intergenic |
AATTTCTGGCAACCAAGTTT+GGG | 0.389187 | 2.3:-47446335 | None:intergenic |
CGCTTGTGAAGGTTCTTAGA+TGG | 0.399205 | 2.3:+47439614 | MS.gene037158:CDS |
TAGAATGCTTCCATTGACTT+TGG | 0.406968 | 2.3:-47445730 | None:intergenic |
TCTACAAGTCTGTTGTACTA+TGG | 0.413794 | 2.3:+47445790 | MS.gene037158:CDS |
AGCACAAGAAATGCCTCTTT+GGG | 0.416965 | 2.3:-47443075 | None:intergenic |
AGTTAGGTACAAAGATCTAT+TGG | 0.421187 | 2.3:+47442944 | MS.gene037158:intron |
GTCTGGATTGAATCTTTGAC+CGG | 0.423954 | 2.3:-47447129 | None:intergenic |
AAACGAGAACACTAATAAAC+AGG | 0.426371 | 2.3:+47447207 | MS.gene037158:CDS |
GAACTTCTGTGCTACATGAT+TGG | 0.431902 | 2.3:+47443754 | MS.gene037158:CDS |
GTCCCTGACTGCTTTCAATC+AGG | 0.434468 | 2.3:+47445981 | MS.gene037158:CDS |
TTCTCAGAGTTGAAAGCTTA+CGG | 0.443236 | 2.3:-47441832 | None:intergenic |
CCTTGTGCAAACGAAGAAAC+TGG | 0.449502 | 2.3:+47448551 | MS.gene037158:CDS |
ATTACAAAATGCTTTAAAAG+AGG | 0.449642 | 2.3:+47447580 | MS.gene037158:CDS |
AACTGACAAAGATTCATTCC+AGG | 0.452634 | 2.3:+47441202 | MS.gene037158:CDS |
AATTGCAAACCCCTAAAATC+AGG | 0.456001 | 2.3:-47439649 | None:intergenic |
CTTCAATATTCCAAAGTCAA+TGG | 0.458811 | 2.3:+47445720 | MS.gene037158:CDS |
GTTGAATATTGTGAAGGATC+TGG | 0.459416 | 2.3:+47446105 | MS.gene037158:CDS |
AGAGCTAATATCGGTACATC+TGG | 0.459539 | 2.3:-47441863 | None:intergenic |
CCAAAGTTGCAAGTACAATC+AGG | 0.461156 | 2.3:+47448408 | MS.gene037158:CDS |
TCTCCTTTAGTGCCATCACT+TGG | 0.465590 | 2.3:-47440638 | None:intergenic |
GAAGATATTTCCGACATAGA+TGG | 0.466876 | 2.3:+47446982 | MS.gene037158:CDS |
CAAAGAGGCATTTCTTGTGC+TGG | 0.467794 | 2.3:+47443077 | MS.gene037158:CDS |
TTCCCACTGGTTTCGATCAA+CGG | 0.471358 | 2.3:-47439559 | None:intergenic |
CTTGGTTGCCAGAAATTTGG+AGG | 0.477201 | 2.3:+47446341 | MS.gene037158:CDS |
AACCAAGTTTGGGTGTCTAC+AGG | 0.478055 | 2.3:-47446325 | None:intergenic |
CTTTCTATTGGCATATCAGA+TGG | 0.486420 | 2.3:-47448611 | None:intergenic |
GAAGCATTCTATCAAGAGTC+TGG | 0.488574 | 2.3:+47445742 | MS.gene037158:CDS |
CTCCTGTAGACACCCAAACT+TGG | 0.491945 | 2.3:+47446323 | MS.gene037158:CDS |
TACAAGAAATATGGCAAGAC+TGG | 0.500598 | 2.3:+47448368 | MS.gene037158:CDS |
AATTCAGCAAAGGATGGTAT+TGG | 0.501632 | 2.3:-47448656 | None:intergenic |
TGTCTTATGCCAACTGGAGG+AGG | 0.503270 | 2.3:+47440292 | MS.gene037158:CDS |
ATTACAGGGCATCGATAGAA+AGG | 0.503872 | 2.3:+47445678 | MS.gene037158:intron |
CATCACACATGGAACGTTCA+AGG | 0.504328 | 2.3:-47443034 | None:intergenic |
CTACCTGATTGAAAGCAGTC+AGG | 0.508855 | 2.3:-47445984 | None:intergenic |
GTCAAAGATTCAATCCAGAC+TGG | 0.510921 | 2.3:+47447132 | MS.gene037158:CDS |
CCAGTTTCTTCGTTTGCACA+AGG | 0.516370 | 2.3:-47448551 | None:intergenic |
CCTGGGGTTGCTATCAACTC+TGG | 0.516970 | 2.3:-47441168 | None:intergenic |
TATCAAGAGTCTGGCAGAGC+TGG | 0.517527 | 2.3:+47445751 | MS.gene037158:CDS |
ATCCCTGCATTGGCAAAAGA+AGG | 0.521671 | 2.3:+47440334 | MS.gene037158:CDS |
GTTGAAAGCTTACGGTAGCT+AGG | 0.521811 | 2.3:-47441824 | None:intergenic |
AAACCAAGTGATGGCACTAA+AGG | 0.522814 | 2.3:+47440635 | MS.gene037158:CDS |
TTTAAGATTCATGAGGACCT+TGG | 0.527736 | 2.3:+47441108 | MS.gene037158:intron |
CGTCCTAATATATATTATGA+AGG | 0.532445 | 2.3:+47442445 | MS.gene037158:CDS |
TGAGGAAGCAAGTGGATCAG+AGG | 0.535668 | 2.3:+47446960 | MS.gene037158:CDS |
AACAGCAAAAGCAAAAGATA+AGG | 0.537275 | 2.3:+47440695 | MS.gene037158:CDS |
ATGCATTGCGAGAGGCAAGC+AGG | 0.544847 | 2.3:+47447552 | MS.gene037158:CDS |
TTTCTATTGGCATATCAGAT+GGG | 0.550477 | 2.3:-47448610 | None:intergenic |
ACTATTTACAAATTCAGCAA+AGG | 0.550650 | 2.3:-47448666 | None:intergenic |
TTTGTTGGCAGACGGTAATG+AGG | 0.555621 | 2.3:+47447090 | MS.gene037158:intron |
GTAGCGGTTAGAGCTAATAT+CGG | 0.555821 | 2.3:-47441872 | None:intergenic |
AGTAGATGATCGCAGAAGAA+TGG | 0.557653 | 2.3:+47445813 | MS.gene037158:CDS |
GTTCTGGAAAACCGTCTACA+AGG | 0.557842 | 2.3:+47441130 | MS.gene037158:CDS |
AAGCATCAATTTCACGAAGT+CGG | 0.557988 | 2.3:-47448466 | None:intergenic |
TTTGCACAAGGATCTGAAGC+AGG | 0.560071 | 2.3:-47448539 | None:intergenic |
TCTGATAGACTCAAATCTAT+GGG | 0.563358 | 2.3:+47442987 | MS.gene037158:CDS |
TCAGCAAAGGATGGTATTGG+CGG | 0.564520 | 2.3:-47448653 | None:intergenic |
CAAGAGTAGAAAAGAAGATG+AGG | 0.567455 | 2.3:+47448735 | MS.gene037158:CDS |
GTGATGGCACTAAAGGAGAA+AGG | 0.569869 | 2.3:+47440642 | MS.gene037158:CDS |
CTAATATCGGTACATCTGGT+AGG | 0.571335 | 2.3:-47441859 | None:intergenic |
CCAGAGTTGATAGCAACCCC+AGG | 0.571554 | 2.3:+47441168 | MS.gene037158:CDS |
TTTACAAATTCAGCAAAGGA+TGG | 0.573550 | 2.3:-47448662 | None:intergenic |
TAGCGGTGTGAGAGGATGCT+CGG | 0.574135 | 2.3:-47448516 | None:intergenic |
TTGACTTTGGAATATTGAAG+TGG | 0.578764 | 2.3:-47445717 | None:intergenic |
TTCCGGCTAGACCTCGTCAA+TGG | 0.580430 | 2.3:-47441244 | None:intergenic |
CTTGGTACCGCCATCTATGT+CGG | 0.580632 | 2.3:-47446992 | None:intergenic |
GAATTTATATTACGCAACTC+AGG | 0.581192 | 2.3:+47445910 | MS.gene037158:CDS |
CAAGGATCTGAAGCAGGTAG+CGG | 0.583361 | 2.3:-47448533 | None:intergenic |
AAACCTGAAATCATGACCCC+AGG | 0.584799 | 2.3:-47441352 | None:intergenic |
GTGTTATCAGATCCCTGCAT+TGG | 0.589672 | 2.3:+47440324 | MS.gene037158:CDS |
ACTGACAAAGATTCATTCCA+GGG | 0.589704 | 2.3:+47441203 | MS.gene037158:CDS |
CTTTAAAAGAGGCTCAGCAA+CGG | 0.600307 | 2.3:+47447591 | MS.gene037158:CDS |
ATTGACTTGCCTCCTCCAGT+TGG | 0.600471 | 2.3:-47440301 | None:intergenic |
AAAGAAGACACTCGGTGATG+AGG | 0.601426 | 2.3:-47448489 | None:intergenic |
TACCTGATTGAAAGCAGTCA+GGG | 0.601682 | 2.3:-47445983 | None:intergenic |
AGGTTGTCAACAATCTAGCC+CGG | 0.602918 | 2.3:+47447110 | MS.gene037158:CDS |
AAAGCTTGATTTGTTACAGA+GGG | 0.603486 | 2.3:+47447165 | MS.gene037158:CDS |
CAGGGTTCAGAAGGATGTAG+TGG | 0.604897 | 2.3:+47442375 | MS.gene037158:intron |
GCACATTGCATCTCTTCCTG+GGG | 0.609991 | 2.3:+47441336 | MS.gene037158:CDS |
ATAGTACAACAGACTTGTAG+AGG | 0.610407 | 2.3:-47445788 | None:intergenic |
CAGGACTGAATTGGAAACCT+CGG | 0.610698 | 2.3:+47448322 | MS.gene037158:intron |
TAGCAAAGAATCGCTTGTGA+AGG | 0.613522 | 2.3:+47439603 | MS.gene037158:CDS |
GTGAAGGATCTGGATGTCGT+AGG | 0.618444 | 2.3:+47446115 | MS.gene037158:CDS |
GAAGCAGGTAGCGGTGTGAG+AGG | 0.618578 | 2.3:-47448524 | None:intergenic |
ATCTTCAAGAAGAGATGCCG+AGG | 0.619559 | 2.3:-47448339 | None:intergenic |
CTGGTTTCGATCAACGGTAA+CGG | 0.620681 | 2.3:-47439553 | None:intergenic |
AATCGAGATGAGGAAGCAAG+TGG | 0.625360 | 2.3:+47446952 | MS.gene037158:CDS |
ACATATAGCAGCCTTGTAGA+CGG | 0.630508 | 2.3:-47441141 | None:intergenic |
TCAAAGATTCAATCCAGACT+GGG | 0.631414 | 2.3:+47447133 | MS.gene037158:CDS |
AGCTGACAAGTCATCACACA+TGG | 0.631817 | 2.3:-47443045 | None:intergenic |
TCTGGATTGAATCTTTGACC+GGG | 0.636636 | 2.3:-47447128 | None:intergenic |
TCAGCTCATCTATCCCAAAG+AGG | 0.636908 | 2.3:+47443062 | MS.gene037158:CDS |
AAGTTAGGAAAACCAAGTGA+TGG | 0.637786 | 2.3:+47440626 | MS.gene037158:intron |
CAGGTAACAACATCACTATG+TGG | 0.639370 | 2.3:+47446288 | MS.gene037158:intron |
CAGAGTTGATAGCAACCCCA+GGG | 0.640488 | 2.3:+47441169 | MS.gene037158:CDS |
TGAATTCTGGAATCGAGATG+AGG | 0.643068 | 2.3:+47446942 | MS.gene037158:CDS |
AAAAGCTTGATTTGTTACAG+AGG | 0.643516 | 2.3:+47447164 | MS.gene037158:CDS |
AACATACCCAAAAGCAACAG+TGG | 0.646733 | 2.3:-47443805 | None:intergenic |
TACCGTTGATCGAAACCAGT+GGG | 0.649514 | 2.3:+47439557 | MS.gene037158:CDS |
TCACTTAGGAACAGCAGTAG+CGG | 0.655589 | 2.3:-47441888 | None:intergenic |
TCGGCTTCAAAGAAGACACT+CGG | 0.656886 | 2.3:-47448497 | None:intergenic |
TCTACTGATGCAATTGATGG+AGG | 0.659107 | 2.3:+47446910 | MS.gene037158:CDS |
TATTTCTGATGCATTGCGAG+AGG | 0.662630 | 2.3:+47447544 | MS.gene037158:CDS |
ATATCGGTACATCTGGTAGG+TGG | 0.666275 | 2.3:-47441856 | None:intergenic |
TGTGCTCTACGTCAGAGAGG+CGG | 0.672171 | 2.3:+47446378 | MS.gene037158:CDS |
AAGTCTCATTGCCATTGACG+AGG | 0.674873 | 2.3:+47441233 | MS.gene037158:CDS |
TAGATGGTTGAATATTGTGA+AGG | 0.676268 | 2.3:+47446099 | MS.gene037158:intron |
TAGTACAACAGACTTGTAGA+GGG | 0.676895 | 2.3:-47445787 | None:intergenic |
GCTTGTGCTCTACGTCAGAG+AGG | 0.686198 | 2.3:+47446375 | MS.gene037158:CDS |
CTGACAAAGATTCATTCCAG+GGG | 0.689915 | 2.3:+47441204 | MS.gene037158:CDS |
AAGTTGCAAGTACAATCAGG+TGG | 0.702361 | 2.3:+47448411 | MS.gene037158:CDS |
TGACAAAGATTCATTCCAGG+GGG | 0.714299 | 2.3:+47441205 | MS.gene037158:CDS |
GATATTTCCGACATAGATGG+CGG | 0.717738 | 2.3:+47446985 | MS.gene037158:CDS |
TTACCGTTGATCGAAACCAG+TGG | 0.731158 | 2.3:+47439556 | MS.gene037158:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 47439529 | 47448766 | 47439529 | ID=MS.gene037158 |
chr2.3 | mRNA | 47439529 | 47448766 | 47439529 | ID=MS.gene037158.t1;Parent=MS.gene037158 |
chr2.3 | exon | 47439529 | 47439697 | 47439529 | ID=MS.gene037158.t1.exon1;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47439529 | 47439697 | 47439529 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47440278 | 47440385 | 47440278 | ID=MS.gene037158.t1.exon2;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47440278 | 47440385 | 47440278 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47440519 | 47440526 | 47440519 | ID=MS.gene037158.t1.exon3;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47440519 | 47440526 | 47440519 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47440633 | 47440716 | 47440633 | ID=MS.gene037158.t1.exon4;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47440633 | 47440716 | 47440633 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47441114 | 47441254 | 47441114 | ID=MS.gene037158.t1.exon5;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47441114 | 47441254 | 47441114 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47441336 | 47441370 | 47441336 | ID=MS.gene037158.t1.exon6;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47441336 | 47441370 | 47441336 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47441823 | 47441906 | 47441823 | ID=MS.gene037158.t1.exon7;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47441823 | 47441906 | 47441823 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47442378 | 47442466 | 47442378 | ID=MS.gene037158.t1.exon8;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47442378 | 47442466 | 47442378 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47442946 | 47443098 | 47442946 | ID=MS.gene037158.t1.exon9;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47442946 | 47443098 | 47442946 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47443724 | 47443820 | 47443724 | ID=MS.gene037158.t1.exon10;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47443724 | 47443820 | 47443724 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47445579 | 47445582 | 47445579 | ID=MS.gene037158.t1.exon11;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47445579 | 47445582 | 47445579 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47445685 | 47445834 | 47445685 | ID=MS.gene037158.t1.exon12;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47445685 | 47445834 | 47445685 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47445910 | 47446002 | 47445910 | ID=MS.gene037158.t1.exon13;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47445910 | 47446002 | 47445910 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47446102 | 47446167 | 47446102 | ID=MS.gene037158.t1.exon14;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47446102 | 47446167 | 47446102 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47446291 | 47446421 | 47446291 | ID=MS.gene037158.t1.exon15;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47446291 | 47446421 | 47446291 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47446909 | 47447006 | 47446909 | ID=MS.gene037158.t1.exon16;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47446909 | 47447006 | 47446909 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47447101 | 47447228 | 47447101 | ID=MS.gene037158.t1.exon17;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47447101 | 47447228 | 47447101 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47447521 | 47447627 | 47447521 | ID=MS.gene037158.t1.exon18;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47447521 | 47447627 | 47447521 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
chr2.3 | exon | 47448325 | 47448766 | 47448325 | ID=MS.gene037158.t1.exon19;Parent=MS.gene037158.t1 |
chr2.3 | CDS | 47448325 | 47448766 | 47448325 | ID=cds.MS.gene037158.t1;Parent=MS.gene037158.t1 |
Gene Sequence |
Protein sequence |