Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013293.t1 | XP_024633621.1 | 92.5 | 934 | 58 | 4 | 1 | 927 | 1 | 929 | 0.00E+00 | 1690.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013293.t1 | Q9LVP1 | 66.7 | 937 | 277 | 8 | 2 | 926 | 5 | 918 | 0.0e+00 | 1216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013293.t1 | A0A396IZ64 | 92.5 | 934 | 58 | 4 | 1 | 927 | 1 | 929 | 0.0e+00 | 1690.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013293.t1 | MTR_3g096640 | 90.615 | 959 | 53 | 5 | 1 | 927 | 1 | 954 | 0.0 | 1726 |
| MS.gene013293.t1 | MTR_3g084800 | 35.101 | 641 | 378 | 13 | 8 | 640 | 6 | 616 | 7.84e-108 | 353 |
| MS.gene013293.t1 | MTR_3g084800 | 35.112 | 581 | 344 | 12 | 68 | 640 | 1 | 556 | 1.42e-98 | 327 |
| MS.gene013293.t1 | MTR_5g061930 | 39.953 | 423 | 231 | 11 | 177 | 587 | 23 | 434 | 5.67e-84 | 277 |
| MS.gene013293.t1 | MTR_5g061940 | 35.463 | 313 | 162 | 11 | 56 | 346 | 7 | 301 | 2.35e-43 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013293.t1 | AT5G63920 | 65.032 | 938 | 291 | 10 | 2 | 926 | 5 | 918 | 0.0 | 1224 |
| MS.gene013293.t1 | AT2G32000 | 36.129 | 620 | 366 | 10 | 6 | 617 | 5 | 602 | 2.55e-107 | 352 |
| MS.gene013293.t1 | AT2G32000 | 36.620 | 568 | 327 | 10 | 66 | 617 | 25 | 575 | 1.30e-100 | 333 |
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAACTTGAATTGAATT+AGG | 0.230264 | 3.4:+87437390 | None:intergenic |
| TGATTCTCCAGCAGAAAATT+TGG | 0.240475 | 3.4:+87444789 | None:intergenic |
| TTGGTTCATTCCAGGATATT+GGG | 0.243430 | 3.4:+87435603 | None:intergenic |
| TTAGCACCATATCTGATTCT+TGG | 0.264502 | 3.4:+87439333 | None:intergenic |
| GTTGGTTCATTCCAGGATAT+TGG | 0.280397 | 3.4:+87435602 | None:intergenic |
| CTCATGAACCAGAAGAGTTT+TGG | 0.285949 | 3.4:-87446759 | MS.gene013293:CDS |
| GCTCTCTTAATAGTAAGATT+TGG | 0.292678 | 3.4:+87447539 | None:intergenic |
| TTGATTAACCAAAACTCTTC+TGG | 0.293377 | 3.4:+87446751 | None:intergenic |
| TAAAAGCAAAGCTGAAGTTT+TGG | 0.299296 | 3.4:-87440375 | MS.gene013293:CDS |
| CATTAACATGGTCTGAAATC+TGG | 0.304374 | 3.4:+87446989 | None:intergenic |
| GTTGGTATGATGGGCATTGC+TGG | 0.305218 | 3.4:+87435753 | None:intergenic |
| GTTGGTTGTTCGCCACTTCC+TGG | 0.316935 | 3.4:-87444633 | MS.gene013293:CDS |
| TCCAGGATATTGGGGATTCC+TGG | 0.330018 | 3.4:+87435612 | None:intergenic |
| GATCACACGAGTGCCATTTC+CGG | 0.342603 | 3.4:+87447842 | None:intergenic |
| TGTTCGCACTGTCAAGAAAC+AGG | 0.342940 | 3.4:-87435673 | MS.gene013293:CDS |
| TAGCACCTTCTATCAGAAAT+AGG | 0.343437 | 3.4:+87433750 | None:intergenic |
| CTTGCCTTGGGTTGGTATGA+TGG | 0.344679 | 3.4:+87435701 | None:intergenic |
| GTTGGTATGATGGGCGTTGC+TGG | 0.346475 | 3.4:+87435711 | None:intergenic |
| TGATCCCGCCGATCTCTTCC+AGG | 0.347247 | 3.4:-87447824 | MS.gene013293:CDS |
| TGGACCCTGGGGCGGGACTT+TGG | 0.348552 | 3.4:-87444867 | MS.gene013293:CDS |
| TCGACGATCGTTACCGGAAA+TGG | 0.351681 | 3.4:-87447855 | MS.gene013293:CDS |
| ATGTCTATATCTATGATAGA+TGG | 0.354533 | 3.4:-87443800 | MS.gene013293:CDS |
| CCTGGAATGAACCAACAAAA+TGG | 0.357678 | 3.4:-87435595 | MS.gene013293:intron |
| GATTTGTTGTGGAAAGATAC+TGG | 0.357933 | 3.4:-87446792 | MS.gene013293:CDS |
| TGTTAAACCCTAGGATAAAA+AGG | 0.363300 | 3.4:-87447684 | MS.gene013293:intron |
| GAAATACTGTCTTGAGTTAT+GGG | 0.363324 | 3.4:-87446929 | MS.gene013293:CDS |
| TTGACTTCGACGATCGTTAC+CGG | 0.368843 | 3.4:-87447861 | MS.gene013293:CDS |
| TTGAATTGAATTAGGTAAAC+AGG | 0.374364 | 3.4:+87437398 | None:intergenic |
| AATATATGCACAACGGTTGC+TGG | 0.376663 | 3.4:-87444887 | MS.gene013293:CDS |
| GGTGGATGGGTGGATGAGCC+TGG | 0.378403 | 3.4:+87444815 | None:intergenic |
| GTAGGGTGAGGCACTTGTTA+TGG | 0.378652 | 3.4:-87441867 | MS.gene013293:intron |
| TACTATTGAGCTTGAGAAAC+GGG | 0.379792 | 3.4:-87446394 | MS.gene013293:CDS |
| CGAATTTATGAACCGGAGCC+TGG | 0.380865 | 3.4:+87447806 | None:intergenic |
| AGAAATACTGTCTTGAGTTA+TGG | 0.383690 | 3.4:-87446930 | MS.gene013293:CDS |
| CACAACGGTTGCTGGACCCT+GGG | 0.387322 | 3.4:-87444879 | MS.gene013293:CDS |
| TAGGGTGAGGCACTTGTTAT+GGG | 0.387423 | 3.4:-87441866 | MS.gene013293:CDS |
| CGCCACGTTTAGGACGGTTA+TGG | 0.388143 | 3.4:+87448056 | None:intergenic |
| AAGCTACAATGTCAACCATT+TGG | 0.394455 | 3.4:-87437351 | MS.gene013293:CDS |
| GCATCAGCAAACCACTTATT+AGG | 0.397649 | 3.4:+87447231 | None:intergenic |
| GAATTATGCTATCGGTGAAC+AGG | 0.404993 | 3.4:-87443760 | MS.gene013293:intron |
| TGCGAACAAACTGCTTGCCT+TGG | 0.406548 | 3.4:+87435688 | None:intergenic |
| AGAAAATTTGGTGGGGTGGA+TGG | 0.407631 | 3.4:+87444801 | None:intergenic |
| GGATACTTTGGCTTCTCCCT+TGG | 0.408493 | 3.4:+87446432 | None:intergenic |
| GGATATTAAAAGGACATTAG+AGG | 0.408998 | 3.4:-87447663 | MS.gene013293:CDS |
| ACGGCTTCTCCGCCACGTTT+AGG | 0.410568 | 3.4:+87448046 | None:intergenic |
| AGCTACAATGTCAACCATTT+GGG | 0.410703 | 3.4:-87437350 | MS.gene013293:intron |
| ACTTGCAACAATTGCACTCC+TGG | 0.413027 | 3.4:-87438314 | MS.gene013293:intron |
| ACCGCTTCTGATATTGATCC+AGG | 0.413768 | 3.4:+87438350 | None:intergenic |
| CACTGTGGTTTCAGCTCCTA+AGG | 0.415875 | 3.4:+87444592 | None:intergenic |
| CTCCGTCCTCGGTCACCTCA+TGG | 0.415907 | 3.4:-87447887 | MS.gene013293:CDS |
| GAAAATTTGGTGGGGTGGAT+GGG | 0.416182 | 3.4:+87444802 | None:intergenic |
| GTGTTTCACACCAACTAATC+TGG | 0.419328 | 3.4:-87442653 | MS.gene013293:intron |
| ACCAGATCTTAGAGCAGTTA+TGG | 0.422804 | 3.4:-87440429 | MS.gene013293:CDS |
| TGGCCGTGGATCTCGTGGTA+GGG | 0.422988 | 3.4:-87433826 | MS.gene013293:CDS |
| GTGATCCTATTTCTGATAGA+AGG | 0.424020 | 3.4:-87433755 | MS.gene013293:CDS |
| TTACCTCTATTACAGAATAT+GGG | 0.427396 | 3.4:-87433931 | MS.gene013293:intron |
| AGGGGATGGGGAGGATACTT+TGG | 0.428104 | 3.4:+87446420 | None:intergenic |
| TCATCATGCCCACCACCTCT+AGG | 0.430439 | 3.4:+87444838 | None:intergenic |
| AGAAGTGTTGTCTGGCTCCC+TGG | 0.433929 | 3.4:-87438368 | MS.gene013293:CDS |
| TCCATAACTGCTCTAAGATC+TGG | 0.434712 | 3.4:+87440428 | None:intergenic |
| TAGACCTTGGGTTGGTATGA+TGG | 0.436362 | 3.4:+87435743 | None:intergenic |
| AGTGATGAGCAGAATGGAAC+TGG | 0.439744 | 3.4:-87439383 | MS.gene013293:CDS |
| AACCAAGGTTCTTCCGAGTA+AGG | 0.441367 | 3.4:-87447989 | MS.gene013293:CDS |
| CTTGAGTTATGGGCCTTGCC+AGG | 0.448133 | 3.4:-87446919 | MS.gene013293:intron |
| GCATCCAACCGTGGTCGAAA+TGG | 0.452609 | 3.4:-87433849 | MS.gene013293:CDS |
| ATTTGAACAGAGAAACTACT+TGG | 0.453097 | 3.4:-87443823 | MS.gene013293:intron |
| TGTGTCTCAAAGCCGGCCTT+AGG | 0.457715 | 3.4:-87444608 | MS.gene013293:CDS |
| GTGGCCGTGGATCTCGTGGT+AGG | 0.459589 | 3.4:-87433827 | MS.gene013293:CDS |
| AGACATCAGAGTCCACGATT+GGG | 0.460334 | 3.4:+87433690 | None:intergenic |
| CTGGTTGATGCAGTAGACCT+TGG | 0.462492 | 3.4:+87435730 | None:intergenic |
| CGCCGATCTCTTCCAGGCTC+CGG | 0.463010 | 3.4:-87447818 | MS.gene013293:CDS |
| TTTCGACCACGGTTGGATGC+TGG | 0.465860 | 3.4:+87433852 | None:intergenic |
| GGATCAAGGGTCAATGTTGT+TGG | 0.465981 | 3.4:+87442926 | None:intergenic |
| AAGGCGTTGCTAATTTCAGC+TGG | 0.470283 | 3.4:-87446708 | MS.gene013293:CDS |
| TCTGCATTGATTGACAGGTT+CGG | 0.470662 | 3.4:-87447509 | MS.gene013293:CDS |
| TGGTTGATGCAGTAGACCTT+GGG | 0.471981 | 3.4:+87435731 | None:intergenic |
| TTTCTCCAAAGTCCCGCCCC+AGG | 0.474033 | 3.4:+87444862 | None:intergenic |
| GCACAACGGTTGCTGGACCC+TGG | 0.475049 | 3.4:-87444880 | MS.gene013293:CDS |
| ATGCTCTTCACCTCCGTCCT+CGG | 0.475163 | 3.4:-87447898 | MS.gene013293:CDS |
| ACGGTTGCTGGACCCTGGGG+CGG | 0.476317 | 3.4:-87444875 | MS.gene013293:CDS |
| GAATTCAACTACACCATTCG+AGG | 0.476492 | 3.4:-87447935 | MS.gene013293:CDS |
| CGGTTGCTGGACCCTGGGGC+GGG | 0.479962 | 3.4:-87444874 | MS.gene013293:CDS |
| GCGAACAAACTGCTTGCCTT+GGG | 0.482226 | 3.4:+87435689 | None:intergenic |
| GAGAACGACCGTCCCTTACT+CGG | 0.482391 | 3.4:+87447976 | None:intergenic |
| TGGCTACAGTTCCCTACGCT+TGG | 0.482965 | 3.4:-87446814 | MS.gene013293:intron |
| TTTGATGCAGGGAAATCATC+AGG | 0.491091 | 3.4:-87447274 | MS.gene013293:intron |
| TGTTCACCGATAGCATAATT+CGG | 0.491455 | 3.4:+87443762 | None:intergenic |
| CATCATGCCCACCACCTCTA+GGG | 0.492059 | 3.4:+87444839 | None:intergenic |
| AATTTGGTGGGGTGGATGGG+TGG | 0.492316 | 3.4:+87444805 | None:intergenic |
| TTGCCTTGGGTTGGTATGAT+GGG | 0.492759 | 3.4:+87435702 | None:intergenic |
| CTCAATAGTACTCAGGGGAT+GGG | 0.492929 | 3.4:+87446407 | None:intergenic |
| CTTCACAGACTCGACGCTCC+AGG | 0.496741 | 3.4:-87435630 | MS.gene013293:CDS |
| GGCCGTGGATCTCGTGGTAG+GGG | 0.497650 | 3.4:-87433825 | MS.gene013293:CDS |
| TGGAGAAACCCTAGAGGTGG+TGG | 0.498100 | 3.4:-87444847 | MS.gene013293:CDS |
| AGGTGGTGGGCATGATGACC+AGG | 0.499009 | 3.4:-87444833 | MS.gene013293:CDS |
| TCAATAGTACTCAGGGGATG+GGG | 0.499301 | 3.4:+87446408 | None:intergenic |
| TACGAGCTTACCAGATTAGT+TGG | 0.499833 | 3.4:+87442643 | None:intergenic |
| GGAGGTGAAGAGCATTTGAC+AGG | 0.499944 | 3.4:+87447906 | None:intergenic |
| GGTACCGGCTCCCGCATGCC+AGG | 0.500894 | 3.4:-87436940 | MS.gene013293:intron |
| CGTGGTCGAAATGGTGGCCG+TGG | 0.503890 | 3.4:-87433840 | MS.gene013293:CDS |
| GTTATTATAGGTTGCATTGG+TGG | 0.504357 | 3.4:-87437000 | MS.gene013293:intron |
| ATGGATCTAATTCTTCTAAC+GGG | 0.507140 | 3.4:-87433797 | MS.gene013293:CDS |
| AGTGCAATTGTTGCAAGTAT+TGG | 0.507817 | 3.4:+87438319 | None:intergenic |
| CTCAAGCTCAATAGTACTCA+GGG | 0.508852 | 3.4:+87446401 | None:intergenic |
| CTCCATGAGGTGACCGAGGA+CGG | 0.509112 | 3.4:+87447885 | None:intergenic |
| AACAGTGTAGAAGTGTTGTC+TGG | 0.510106 | 3.4:-87438376 | MS.gene013293:intron |
| AGACCTTGGGTTGGTATGAT+GGG | 0.511194 | 3.4:+87435744 | None:intergenic |
| CGCCACGATTTCGCCACCGA+CGG | 0.511785 | 3.4:+87448027 | None:intergenic |
| AAGACATGCACCTACCCAAA+TGG | 0.513721 | 3.4:+87437336 | None:intergenic |
| GAGACATCAGAGTCCACGAT+TGG | 0.515259 | 3.4:+87433689 | None:intergenic |
| GCCACCATTTCGACCACGGT+TGG | 0.515814 | 3.4:+87433845 | None:intergenic |
| TTCTACGCATGTCTAACAAA+GGG | 0.516402 | 3.4:-87434261 | MS.gene013293:CDS |
| GAGCTCTGAGCGCACAATGA+AGG | 0.518579 | 3.4:-87446352 | MS.gene013293:intron |
| TCCAGGAATCCCCAATATCC+TGG | 0.519396 | 3.4:-87435613 | MS.gene013293:CDS |
| ACTAAGAAGAGGTGGTGGAT+TGG | 0.523465 | 3.4:+87442895 | None:intergenic |
| TGACAGGGTTTGACCTCGAA+TGG | 0.524688 | 3.4:+87447922 | None:intergenic |
| CCCTACGCTTGGATTTGTTG+TGG | 0.526991 | 3.4:-87446803 | MS.gene013293:CDS |
| TCATTCTCACCTTGTCCATA+CGG | 0.527284 | 3.4:+87442855 | None:intergenic |
| TGTGTTATTATAGGTTGCAT+TGG | 0.529811 | 3.4:-87437003 | MS.gene013293:intron |
| TGGTTCATTCCAGGATATTG+GGG | 0.530170 | 3.4:+87435604 | None:intergenic |
| TCTCAAGCTCAATAGTACTC+AGG | 0.531785 | 3.4:+87446400 | None:intergenic |
| CAGACCTGGCATGCGGGAGC+CGG | 0.534574 | 3.4:+87436936 | None:intergenic |
| TTGAGACACATGCCAGGAAG+TGG | 0.535512 | 3.4:+87444621 | None:intergenic |
| GTACTATTGAGCTTGAGAAA+CGG | 0.536291 | 3.4:-87446395 | MS.gene013293:CDS |
| GGAGCCTGGAAGAGATCGGC+GGG | 0.539213 | 3.4:+87447820 | None:intergenic |
| GCTCAATAGTACTCAGGGGA+TGG | 0.543858 | 3.4:+87446406 | None:intergenic |
| CCGGCTTTGAGACACATGCC+AGG | 0.544203 | 3.4:+87444615 | None:intergenic |
| ACAAACTGCTTGCCTTGGGT+TGG | 0.544791 | 3.4:+87435693 | None:intergenic |
| TCTGTTGCATGCAGCTCGTG+TGG | 0.545763 | 3.4:-87434336 | MS.gene013293:CDS |
| ACTTTGCCAAGAATCAGATA+TGG | 0.546914 | 3.4:-87439339 | MS.gene013293:CDS |
| TGATGCCGTAGATGCTAGGC+AGG | 0.547385 | 3.4:-87447214 | MS.gene013293:intron |
| TTCATACAGACCTGGCATGC+GGG | 0.547866 | 3.4:+87436930 | None:intergenic |
| AACAACAAGGGCATCCTGAG+TGG | 0.548017 | 3.4:-87444912 | MS.gene013293:CDS |
| TCGGGAACGAATTTATGAAC+CGG | 0.548166 | 3.4:+87447799 | None:intergenic |
| ACCACCTCTTCTTAGTGAAG+CGG | 0.548789 | 3.4:-87442888 | MS.gene013293:CDS |
| TTCTCCAAAGTCCCGCCCCA+GGG | 0.549060 | 3.4:+87444863 | None:intergenic |
| TCCCTTACTCGGAAGAACCT+TGG | 0.550225 | 3.4:+87447987 | None:intergenic |
| TATATCTATGATAGATGGGA+TGG | 0.550470 | 3.4:-87443795 | MS.gene013293:CDS |
| AGCGGATTTGCTGAGCCGTA+TGG | 0.551133 | 3.4:-87442870 | MS.gene013293:CDS |
| ATCTTGTCGAGCCTAATAAG+TGG | 0.551354 | 3.4:-87447242 | MS.gene013293:CDS |
| TCTTGCAGATTAAATAGAGT+TGG | 0.552153 | 3.4:-87439407 | MS.gene013293:intron |
| CAGCAGAAAATTTGGTGGGG+TGG | 0.554124 | 3.4:+87444797 | None:intergenic |
| ACAACATTGACCCTTGATCC+CGG | 0.560641 | 3.4:-87442923 | MS.gene013293:CDS |
| TGTCTATATCTATGATAGAT+GGG | 0.560951 | 3.4:-87443799 | MS.gene013293:CDS |
| TGGATGTCGTAGTTACCCTC+AGG | 0.561236 | 3.4:-87438887 | MS.gene013293:intron |
| GCAATTGTTGCAAGTATTGG+TGG | 0.562944 | 3.4:+87438322 | None:intergenic |
| ACAACAAGGGCATCCTGAGT+GGG | 0.565557 | 3.4:-87444911 | MS.gene013293:CDS |
| ACTCGCCTGCCTAGCATCTA+CGG | 0.565949 | 3.4:+87447209 | None:intergenic |
| GTCATAGACACTGTTACAGA+TGG | 0.566110 | 3.4:-87446954 | MS.gene013293:CDS |
| GATATGAAATCAGTCAGTGA+AGG | 0.567015 | 3.4:-87440401 | MS.gene013293:CDS |
| GCTAATGTTTGCCCCAATCG+TGG | 0.568599 | 3.4:-87433702 | MS.gene013293:CDS |
| GATGAACTCAACAATGGCAG+TGG | 0.568984 | 3.4:-87433906 | MS.gene013293:CDS |
| GTTGAATTCGAAGATTCTGT+TGG | 0.570124 | 3.4:+87447949 | None:intergenic |
| CCTGGCATGTGTCTCAAAGC+CGG | 0.571543 | 3.4:-87444615 | MS.gene013293:CDS |
| TTGACAGAAATATGTGGTAC+CGG | 0.572024 | 3.4:-87436955 | MS.gene013293:CDS |
| GGGACATTCGTGTCAGCCAC+TGG | 0.573475 | 3.4:-87433777 | MS.gene013293:CDS |
| ACAGTGGAAATTGACATTGC+TGG | 0.573505 | 3.4:-87444575 | MS.gene013293:CDS |
| ACCAAGGTTCTTCCGAGTAA+GGG | 0.573669 | 3.4:-87447988 | MS.gene013293:CDS |
| CAACATAAACACACCTGGCA+AGG | 0.574972 | 3.4:+87446906 | None:intergenic |
| GTGGTTTCAGCTCCTAAGGC+CGG | 0.577122 | 3.4:+87444596 | None:intergenic |
| GAACTCAACAATGGCAGTGG+AGG | 0.578224 | 3.4:-87433903 | MS.gene013293:CDS |
| TTCTCCAGCAGAAAATTTGG+TGG | 0.580669 | 3.4:+87444792 | None:intergenic |
| ATGATTCCGAATTATGCTAT+CGG | 0.582465 | 3.4:-87443768 | MS.gene013293:CDS |
| AGCCGTCGGTGGCGAAATCG+TGG | 0.582780 | 3.4:-87448029 | MS.gene013293:CDS |
| AATGGATCTAATTCTTCTAA+CGG | 0.582931 | 3.4:-87433798 | MS.gene013293:CDS |
| TGAACACTTACGGTTGCAGT+TGG | 0.583134 | 3.4:+87446543 | None:intergenic |
| TCTCCAGCAGAAAATTTGGT+GGG | 0.584482 | 3.4:+87444793 | None:intergenic |
| ATAGTACTCAGGGGATGGGG+AGG | 0.585440 | 3.4:+87446411 | None:intergenic |
| TTGCTGATGCCGTAGATGCT+AGG | 0.587239 | 3.4:-87447218 | MS.gene013293:CDS |
| AAAAGCATCTTTCATTAACA+TGG | 0.587316 | 3.4:+87446977 | None:intergenic |
| TCCAACCGTGGTCGAAATGG+TGG | 0.588844 | 3.4:-87433846 | MS.gene013293:CDS |
| CTTCTCCGCCACGTTTAGGA+CGG | 0.588923 | 3.4:+87448050 | None:intergenic |
| TTTGTGGCTTGATTGCGATA+GGG | 0.588994 | 3.4:-87447612 | MS.gene013293:CDS |
| TCTCGTGGTAGGGGTCGCAA+TGG | 0.589769 | 3.4:-87433816 | MS.gene013293:CDS |
| CGCCATAACCGTCCTAAACG+TGG | 0.591771 | 3.4:-87448058 | MS.gene013293:CDS |
| CAAACATTAGCAAAGTGAGA+TGG | 0.592978 | 3.4:+87433714 | None:intergenic |
| TGTATAGGAGTGCATTGGTA+CGG | 0.593084 | 3.4:-87442743 | MS.gene013293:intron |
| TGTTCTCATAGATCAGATGA+AGG | 0.594505 | 3.4:-87446727 | MS.gene013293:CDS |
| CTGGAGCGTCGAGTCTGTGA+AGG | 0.596551 | 3.4:+87435631 | None:intergenic |
| AACCGGAGCCTGGAAGAGAT+CGG | 0.597445 | 3.4:+87447816 | None:intergenic |
| GACATCAGAGTCCACGATTG+GGG | 0.597506 | 3.4:+87433691 | None:intergenic |
| CCACAACAAATCCAAGCGTA+GGG | 0.598465 | 3.4:+87446803 | None:intergenic |
| GTTGGCAGTGATGAGCAGAA+TGG | 0.601756 | 3.4:-87439389 | MS.gene013293:CDS |
| TTGTGCGCTCAGAGCTCATG+CGG | 0.601824 | 3.4:+87446358 | None:intergenic |
| CCCTGGATCAATATCAGAAG+CGG | 0.602820 | 3.4:-87438351 | MS.gene013293:CDS |
| ATTTGTTGTGGAAAGATACT+GGG | 0.603230 | 3.4:-87446791 | MS.gene013293:CDS |
| GCAATTGTGCAAGAACAACA+AGG | 0.605847 | 3.4:-87444925 | MS.gene013293:CDS |
| TTTCTGCTGGAGAATCAGGA+TGG | 0.607893 | 3.4:-87444783 | MS.gene013293:CDS |
| ATATGAAATCAGTCAGTGAA+GGG | 0.608953 | 3.4:-87440400 | MS.gene013293:CDS |
| CTCCAGCAGAAAATTTGGTG+GGG | 0.610625 | 3.4:+87444794 | None:intergenic |
| GTGATGAGCAGAATGGAACT+GGG | 0.610637 | 3.4:-87439382 | MS.gene013293:CDS |
| CACGGCCACCATTTCGACCA+CGG | 0.611148 | 3.4:+87433841 | None:intergenic |
| TGGTTGACATTGTAGCTTGG+TGG | 0.612034 | 3.4:+87437356 | None:intergenic |
| TCCACAACAAATCCAAGCGT+AGG | 0.614617 | 3.4:+87446802 | None:intergenic |
| GTTCTACGCATGTCTAACAA+AGG | 0.614821 | 3.4:-87434262 | MS.gene013293:CDS |
| AATGGTGGCCGTGGATCTCG+TGG | 0.616242 | 3.4:-87433831 | MS.gene013293:CDS |
| GCTTCACTAAGAAGAGGTGG+TGG | 0.616934 | 3.4:+87442890 | None:intergenic |
| TGTGCATATATTCCCCACTC+AGG | 0.617094 | 3.4:+87444898 | None:intergenic |
| AACATACTCTCACGCAACCA+AGG | 0.617599 | 3.4:-87448004 | MS.gene013293:CDS |
| TTTGCTGAGCCGTATGGACA+AGG | 0.617926 | 3.4:-87442864 | MS.gene013293:intron |
| GGACATTAGAGGAAGAAGCT+AGG | 0.618034 | 3.4:-87447652 | MS.gene013293:CDS |
| TTTGCAATTCGCAAAACACA+CGG | 0.618750 | 3.4:+87434309 | None:intergenic |
| ACAATTGTATAGGAGTGCAT+TGG | 0.623633 | 3.4:-87442748 | MS.gene013293:intron |
| AGGCGTTGCTAATTTCAGCT+GGG | 0.625767 | 3.4:-87446707 | MS.gene013293:CDS |
| TCCGCTTCACTAAGAAGAGG+TGG | 0.626034 | 3.4:+87442887 | None:intergenic |
| TGATGCAGTAGACCTTGGGT+TGG | 0.627683 | 3.4:+87435735 | None:intergenic |
| GGAGAAACCCTAGAGGTGGT+GGG | 0.628332 | 3.4:-87444846 | MS.gene013293:CDS |
| AAGAAGCTAGGCGGTGTCAG+TGG | 0.631749 | 3.4:-87447640 | MS.gene013293:CDS |
| GACCCCTACCACGAGATCCA+CGG | 0.633791 | 3.4:+87433823 | None:intergenic |
| CGAGTCACCGTAACAATGGG+TGG | 0.636285 | 3.4:-87448084 | None:intergenic |
| TGGCTTGATTGCGATAGGGA+AGG | 0.636553 | 3.4:-87447608 | MS.gene013293:CDS |
| GGTTCATAAATTCGTTCCCG+AGG | 0.636955 | 3.4:-87447797 | MS.gene013293:intron |
| ATTCATACAGACCTGGCATG+CGG | 0.637245 | 3.4:+87436929 | None:intergenic |
| GCATTGCTGGTTGATGCAGT+AGG | 0.637673 | 3.4:+87435766 | None:intergenic |
| AAATGGTTGACATTGTAGCT+TGG | 0.638777 | 3.4:+87437353 | None:intergenic |
| CATGAGGTGACCGAGGACGG+AGG | 0.638882 | 3.4:+87447888 | None:intergenic |
| CGGAGCCTGGAAGAGATCGG+CGG | 0.642990 | 3.4:+87447819 | None:intergenic |
| GTTCGCACTGTCAAGAAACA+GGG | 0.645630 | 3.4:-87435672 | MS.gene013293:CDS |
| CCGCTTCTGATATTGATCCA+GGG | 0.647564 | 3.4:+87438351 | None:intergenic |
| AAGTTATCAGTTTCTGTACG+AGG | 0.650574 | 3.4:+87445733 | None:intergenic |
| ATGTGGGAGGGTGATTCTAG+AGG | 0.651463 | 3.4:-87444537 | MS.gene013293:intron |
| AAACGTGGCGGAGAAGCCGT+CGG | 0.653200 | 3.4:-87448043 | MS.gene013293:CDS |
| TGTTATGGGATATGATGACA+TGG | 0.653335 | 3.4:-87441852 | MS.gene013293:CDS |
| ACACAGTTGACAGAAATATG+TGG | 0.656276 | 3.4:-87436961 | MS.gene013293:CDS |
| CAACAAGGGCATCCTGAGTG+GGG | 0.661234 | 3.4:-87444910 | MS.gene013293:CDS |
| CGTGGCGGAGAAGCCGTCGG+TGG | 0.661549 | 3.4:-87448040 | MS.gene013293:CDS |
| GAACTGGGGTAGTTGTTCGA+CGG | 0.664560 | 3.4:-87439367 | MS.gene013293:CDS |
| ATGCCCATCATACCAACCCA+AGG | 0.669332 | 3.4:-87435747 | MS.gene013293:CDS |
| ACAACGGTTGCTGGACCCTG+GGG | 0.669856 | 3.4:-87444878 | MS.gene013293:CDS |
| GAGGTGAAGAGCATTTGACA+GGG | 0.670171 | 3.4:+87447907 | None:intergenic |
| CTTTGGAGAAACCCTAGAGG+TGG | 0.670933 | 3.4:-87444850 | MS.gene013293:CDS |
| CAATTGTGCAAGAACAACAA+GGG | 0.671925 | 3.4:-87444924 | MS.gene013293:CDS |
| ACAACAGAAACTGTATGAGT+TGG | 0.672041 | 3.4:-87444651 | MS.gene013293:intron |
| AAATCCGCTTCACTAAGAAG+AGG | 0.673563 | 3.4:+87442884 | None:intergenic |
| GTGCCTTCAGGTATAAACTG+TGG | 0.675508 | 3.4:-87440454 | MS.gene013293:intron |
| ACGCCCATCATACCAACCCA+AGG | 0.676042 | 3.4:-87435705 | MS.gene013293:CDS |
| GATAACTGATGAAACCACCT+TGG | 0.679483 | 3.4:+87445755 | None:intergenic |
| AGGTTCTTCCGAGTAAGGGA+CGG | 0.683064 | 3.4:-87447984 | MS.gene013293:CDS |
| ATCAGAAATAGGATCACCAG+TGG | 0.684540 | 3.4:+87433761 | None:intergenic |
| CCTCTATTACAGAATATGGG+AGG | 0.688252 | 3.4:-87433928 | MS.gene013293:intron |
| AGCAATGTCAATTTCCACTG+TGG | 0.691502 | 3.4:+87444577 | None:intergenic |
| AGGTGACAAAAGTAACACCA+AGG | 0.692380 | 3.4:-87446449 | MS.gene013293:CDS |
| GGTGACAAAAGTAACACCAA+GGG | 0.692729 | 3.4:-87446448 | MS.gene013293:CDS |
| TGGGAGGATGAACTCAACAA+TGG | 0.692966 | 3.4:-87433912 | MS.gene013293:CDS |
| GCTCATGCGGAAGTATCGTG+AGG | 0.700588 | 3.4:+87446371 | None:intergenic |
| CAAGCTCCATGAGGTGACCG+AGG | 0.701223 | 3.4:+87447881 | None:intergenic |
| TCTACGCATGTCTAACAAAG+GGG | 0.704307 | 3.4:-87434260 | MS.gene013293:CDS |
| GTTATGGGATATGATGACAT+GGG | 0.706693 | 3.4:-87441851 | MS.gene013293:CDS |
| CATTAGAGGAAGAAGCTAGG+CGG | 0.714956 | 3.4:-87447649 | MS.gene013293:CDS |
| AGTACTCCAGCATCCAACCG+TGG | 0.718670 | 3.4:-87433858 | MS.gene013293:CDS |
| CGTCGAAGTCAAGCTCCATG+AGG | 0.719905 | 3.4:+87447872 | None:intergenic |
| GATAGAAGGTGCTATACATG+TGG | 0.721458 | 3.4:-87433741 | MS.gene013293:CDS |
| GTGGCAGAAGAACTCTACCA+AGG | 0.723450 | 3.4:-87445772 | MS.gene013293:CDS |
| TGATGAGCAGAATGGAACTG+GGG | 0.724666 | 3.4:-87439381 | MS.gene013293:CDS |
| TCAAGCTCAATAGTACTCAG+GGG | 0.728007 | 3.4:+87446402 | None:intergenic |
| AATATATGAGATGTGCATCG+AGG | 0.728640 | 3.4:-87446568 | MS.gene013293:CDS |
| CATAACCGTCCTAAACGTGG+CGG | 0.734591 | 3.4:-87448055 | MS.gene013293:CDS |
| TTATGGGATATGATGACATG+GGG | 0.743285 | 3.4:-87441850 | MS.gene013293:intron |
| AGTGGGGAATATATGCACAA+CGG | 0.747288 | 3.4:-87444894 | MS.gene013293:CDS |
| GCAGAAGAACTCTACCAAGG+TGG | 0.750268 | 3.4:-87445769 | MS.gene013293:CDS |
| GGACTTTGGAGAAACCCTAG+AGG | 0.766268 | 3.4:-87444853 | MS.gene013293:CDS |
| CTTAGGAGCTGAAACCACAG+TGG | 0.789942 | 3.4:-87444591 | MS.gene013293:CDS |
| AGTTATCGATGTGTGTACTG+CGG | 0.798572 | 3.4:-87447567 | MS.gene013293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87433695 | 87448091 | 87433695 | ID=MS.gene013293 |
| chr3.4 | mRNA | 87433695 | 87448091 | 87433695 | ID=MS.gene013293.t1;Parent=MS.gene013293 |
| chr3.4 | exon | 87447798 | 87448091 | 87447798 | ID=MS.gene013293.t1.exon1;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87447798 | 87448091 | 87447798 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87447505 | 87447693 | 87447505 | ID=MS.gene013293.t1.exon2;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87447505 | 87447693 | 87447505 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87447215 | 87447286 | 87447215 | ID=MS.gene013293.t1.exon3;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87447215 | 87447286 | 87447215 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87446920 | 87447024 | 87446920 | ID=MS.gene013293.t1.exon4;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87446920 | 87447024 | 87446920 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87446706 | 87446827 | 87446706 | ID=MS.gene013293.t1.exon5;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87446706 | 87446827 | 87446706 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87446554 | 87446626 | 87446554 | ID=MS.gene013293.t1.exon6;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87446554 | 87446626 | 87446554 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87446353 | 87446469 | 87446353 | ID=MS.gene013293.t1.exon7;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87446353 | 87446469 | 87446353 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87445711 | 87445794 | 87445711 | ID=MS.gene013293.t1.exon8;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87445711 | 87445794 | 87445711 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87444768 | 87444947 | 87444768 | ID=MS.gene013293.t1.exon9;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87444768 | 87444947 | 87444768 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87444538 | 87444666 | 87444538 | ID=MS.gene013293.t1.exon10;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87444538 | 87444666 | 87444538 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87443761 | 87443835 | 87443761 | ID=MS.gene013293.t1.exon11;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87443761 | 87443835 | 87443761 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87442865 | 87442954 | 87442865 | ID=MS.gene013293.t1.exon12;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87442865 | 87442954 | 87442865 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87442654 | 87442758 | 87442654 | ID=MS.gene013293.t1.exon13;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87442654 | 87442758 | 87442654 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87441851 | 87441885 | 87441851 | ID=MS.gene013293.t1.exon14;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87441851 | 87441885 | 87441851 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87440337 | 87440466 | 87440337 | ID=MS.gene013293.t1.exon15;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87440337 | 87440466 | 87440337 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87439496 | 87439548 | 87439496 | ID=MS.gene013293.t1.exon16;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87439496 | 87439548 | 87439496 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87439322 | 87439421 | 87439322 | ID=MS.gene013293.t1.exon17;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87439322 | 87439421 | 87439322 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87438888 | 87438926 | 87438888 | ID=MS.gene013293.t1.exon18;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87438888 | 87438926 | 87438888 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87438315 | 87438393 | 87438315 | ID=MS.gene013293.t1.exon19;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87438315 | 87438393 | 87438315 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87437351 | 87437422 | 87437351 | ID=MS.gene013293.t1.exon20;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87437351 | 87437422 | 87437351 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87436941 | 87437012 | 87436941 | ID=MS.gene013293.t1.exon21;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87436941 | 87437012 | 87436941 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87435596 | 87435802 | 87435596 | ID=MS.gene013293.t1.exon22;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87435596 | 87435802 | 87435596 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87434246 | 87434366 | 87434246 | ID=MS.gene013293.t1.exon23;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87434246 | 87434366 | 87434246 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| chr3.4 | exon | 87433695 | 87433938 | 87433695 | ID=MS.gene013293.t1.exon24;Parent=MS.gene013293.t1 |
| chr3.4 | CDS | 87433695 | 87433938 | 87433695 | ID=cds.MS.gene013293.t1;Parent=MS.gene013293.t1 |
| Gene Sequence |
| Protein sequence |
