Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013292.t1 | AES72904.2 | 96.9 | 740 | 8 | 3 | 1 | 725 | 1 | 740 | 0.00E+00 | 1487.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013292.t1 | Q9LVP1 | 73.3 | 735 | 181 | 4 | 2 | 722 | 5 | 738 | 0.0e+00 | 1130.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013292.t1 | G7JC55 | 96.9 | 740 | 8 | 3 | 1 | 725 | 1 | 740 | 0.0e+00 | 1487.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013292.t1 | MTR_3g096640 | 96.892 | 740 | 8 | 3 | 1 | 725 | 1 | 740 | 0.0 | 1493 |
MS.gene013292.t1 | MTR_3g084800 | 36.493 | 633 | 378 | 11 | 8 | 638 | 6 | 616 | 5.12e-127 | 399 |
MS.gene013292.t1 | MTR_3g084800 | 36.237 | 574 | 346 | 9 | 67 | 638 | 1 | 556 | 7.89e-113 | 360 |
MS.gene013292.t1 | MTR_5g061930 | 40.275 | 437 | 238 | 11 | 165 | 589 | 9 | 434 | 2.03e-90 | 290 |
MS.gene013292.t1 | MTR_5g061940 | 34.839 | 310 | 177 | 8 | 52 | 348 | 4 | 301 | 4.16e-51 | 180 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013292.t1 | AT5G63920 | 73.333 | 735 | 181 | 4 | 2 | 722 | 5 | 738 | 0.0 | 1133 |
MS.gene013292.t1 | AT2G32000 | 37.480 | 635 | 377 | 8 | 6 | 638 | 5 | 621 | 7.59e-130 | 406 |
MS.gene013292.t1 | AT2G32000 | 37.197 | 578 | 347 | 6 | 63 | 638 | 31 | 594 | 2.90e-115 | 367 |
MS.gene013292.t1 | AT4G31210 | 22.787 | 610 | 370 | 20 | 116 | 664 | 548 | 1117 | 1.12e-16 | 85.1 |
MS.gene013292.t1 | AT4G31210 | 24.153 | 472 | 276 | 14 | 116 | 535 | 544 | 985 | 1.35e-16 | 85.1 |
MS.gene013292.t1 | AT4G31210 | 24.153 | 472 | 276 | 14 | 116 | 535 | 548 | 989 | 1.41e-16 | 85.1 |
Find 201 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATTCTCCAGCAGAAAATT+TGG | 0.240475 | 3.4:+87458026 | None:intergenic |
TTAGCACCATATCTGATTCT+TGG | 0.264502 | 3.4:+87452573 | None:intergenic |
CTCATGAACCAGAAGAGTTT+TGG | 0.285949 | 3.4:-87459996 | MS.gene013292:CDS |
GCTCTCTTAATAGTAAGATT+TGG | 0.292678 | 3.4:+87460777 | None:intergenic |
TTGATTAACCAAAACTCTTC+TGG | 0.293377 | 3.4:+87459988 | None:intergenic |
TAAAAGCAAAGCTGAAGTTT+TGG | 0.299296 | 3.4:-87453612 | MS.gene013292:CDS |
CATTAACATGGTCTGAAATC+TGG | 0.304374 | 3.4:+87460226 | None:intergenic |
GTTGGTTGTTCGCCACTTCC+TGG | 0.316935 | 3.4:-87457870 | MS.gene013292:CDS |
GATCACACGAGTGCCATTTC+CGG | 0.342603 | 3.4:+87461080 | None:intergenic |
TGATCCCGCCGATCTCTTCC+AGG | 0.347247 | 3.4:-87461062 | MS.gene013292:CDS |
TGGACCCTGGGGCGGGACTT+TGG | 0.348552 | 3.4:-87458104 | MS.gene013292:CDS |
TCGACGATCGTTACCGGAAA+TGG | 0.351681 | 3.4:-87461093 | MS.gene013292:CDS |
ATGTCTATATCTATGATAGA+TGG | 0.354533 | 3.4:-87457037 | MS.gene013292:CDS |
GATTTGTTGTGGAAAGATAC+TGG | 0.357933 | 3.4:-87460029 | MS.gene013292:CDS |
TGTTAAACCCTAGGATAAAA+AGG | 0.363300 | 3.4:-87460922 | MS.gene013292:intron |
GAAATACTGTCTTGAGTTAT+GGG | 0.363324 | 3.4:-87460166 | MS.gene013292:CDS |
TTGACTTCGACGATCGTTAC+CGG | 0.368843 | 3.4:-87461099 | MS.gene013292:CDS |
AATATATGCACAACGGTTGC+TGG | 0.376663 | 3.4:-87458124 | MS.gene013292:CDS |
GGTGGATGGGTGGATGAGCC+TGG | 0.378403 | 3.4:+87458052 | None:intergenic |
GTAGGGTGAGGCACTTGTTA+TGG | 0.378652 | 3.4:-87455104 | MS.gene013292:intron |
TACTATTGAGCTTGAGAAAC+GGG | 0.379792 | 3.4:-87459631 | MS.gene013292:CDS |
CGAATTTATGAACCGGAGCC+TGG | 0.380865 | 3.4:+87461044 | None:intergenic |
AGAAATACTGTCTTGAGTTA+TGG | 0.383690 | 3.4:-87460167 | MS.gene013292:CDS |
CACAACGGTTGCTGGACCCT+GGG | 0.387322 | 3.4:-87458116 | MS.gene013292:CDS |
TAGGGTGAGGCACTTGTTAT+GGG | 0.387423 | 3.4:-87455103 | MS.gene013292:CDS |
CGCCACGTTTAGGACGGTTA+TGG | 0.388143 | 3.4:+87461291 | None:intergenic |
AAGCTACAATGTCAACCATT+TGG | 0.394455 | 3.4:-87450589 | MS.gene013292:CDS |
GCATCAGCAAACCACTTATT+AGG | 0.397649 | 3.4:+87460466 | None:intergenic |
GAATTATGCTATCGGTGAAC+AGG | 0.404993 | 3.4:-87456997 | MS.gene013292:intron |
AGAAAATTTGGTGGGGTGGA+TGG | 0.407631 | 3.4:+87458038 | None:intergenic |
GGATACTTTGGCTTCTCCCT+TGG | 0.408493 | 3.4:+87459669 | None:intergenic |
GGATATTAAAAGGACATTAG+AGG | 0.408998 | 3.4:-87460901 | MS.gene013292:CDS |
ACGGCTTCTCCGCCACGTTT+AGG | 0.410568 | 3.4:+87461281 | None:intergenic |
AGCTACAATGTCAACCATTT+GGG | 0.410703 | 3.4:-87450588 | MS.gene013292:intron |
ACTTGCAACAATTGCACTCC+TGG | 0.413027 | 3.4:-87451553 | MS.gene013292:intron |
ACCGCTTCTGATATTGATCC+AGG | 0.413768 | 3.4:+87451589 | None:intergenic |
CACTGTGGTTTCAGCTCCTA+AGG | 0.415875 | 3.4:+87457829 | None:intergenic |
CTCCGTCCTCGGTCACCTCA+TGG | 0.415907 | 3.4:-87461125 | MS.gene013292:CDS |
GCAACCAAGGTCTTCGAGTA+AGG | 0.416161 | 3.4:-87461225 | MS.gene013292:CDS |
GAAAATTTGGTGGGGTGGAT+GGG | 0.416182 | 3.4:+87458039 | None:intergenic |
GTGTTTCACACCAACTAATC+TGG | 0.419328 | 3.4:-87455890 | MS.gene013292:intron |
ACCAGATCTTAGAGCAGTTA+TGG | 0.422804 | 3.4:-87453666 | MS.gene013292:CDS |
AGGGGATGGGGAGGATACTT+TGG | 0.428104 | 3.4:+87459657 | None:intergenic |
TCATCATGCCCACCACCTCT+AGG | 0.430439 | 3.4:+87458075 | None:intergenic |
GAAGCCGTCGGTGGCGAAAT+CGG | 0.430539 | 3.4:-87461266 | MS.gene013292:CDS |
AGAAGTGTTGTCTGGCTCCC+TGG | 0.433929 | 3.4:-87451607 | MS.gene013292:CDS |
TCCATAACTGCTCTAAGATC+TGG | 0.434712 | 3.4:+87453665 | None:intergenic |
AGTGATGAGCAGAATGGAAC+TGG | 0.439744 | 3.4:-87452623 | MS.gene013292:CDS |
CAGACCTGGCATGCGGGAGC+CGG | 0.443614 | 3.4:+87450175 | None:intergenic |
CTTGAGTTATGGGCCTTGCC+AGG | 0.448133 | 3.4:-87460156 | MS.gene013292:intron |
TGGTGAAAGTAGCACCTATA+CGG | 0.448798 | 3.4:+87460246 | None:intergenic |
GTACCCGGCTCCCGCATGCC+AGG | 0.450753 | 3.4:-87450179 | None:intergenic |
ATTTGAACAGAGAAACTACT+TGG | 0.453097 | 3.4:-87457060 | MS.gene013292:intron |
TGTGTCTCAAAGCCGGCCTT+AGG | 0.457715 | 3.4:-87457845 | MS.gene013292:CDS |
CGCCGATCTCTTCCAGGCTC+CGG | 0.463010 | 3.4:-87461056 | MS.gene013292:CDS |
AGACCTGGCATGCGGGAGCC+GGG | 0.463785 | 3.4:+87450176 | None:intergenic |
GGATCAAGGGTCAATGTTGT+TGG | 0.465981 | 3.4:+87456163 | None:intergenic |
AAGGCGTTGCTAATTTCAGC+TGG | 0.470283 | 3.4:-87459945 | MS.gene013292:CDS |
TTTCTCCAAAGTCCCGCCCC+AGG | 0.474033 | 3.4:+87458099 | None:intergenic |
GCACAACGGTTGCTGGACCC+TGG | 0.475049 | 3.4:-87458117 | MS.gene013292:CDS |
ATGCTCTTCACCTCCGTCCT+CGG | 0.475163 | 3.4:-87461136 | MS.gene013292:CDS |
ACGGTTGCTGGACCCTGGGG+CGG | 0.476317 | 3.4:-87458112 | MS.gene013292:CDS |
GAATTCAACTACACCATTCG+AGG | 0.476492 | 3.4:-87461172 | MS.gene013292:CDS |
CGGTTGCTGGACCCTGGGGC+GGG | 0.479962 | 3.4:-87458111 | MS.gene013292:CDS |
TGGCTACAGTTCCCTACGCT+TGG | 0.482965 | 3.4:-87460051 | MS.gene013292:intron |
TGTTCACCGATAGCATAATT+CGG | 0.491455 | 3.4:+87456999 | None:intergenic |
CATCATGCCCACCACCTCTA+GGG | 0.492059 | 3.4:+87458076 | None:intergenic |
AATTTGGTGGGGTGGATGGG+TGG | 0.492316 | 3.4:+87458042 | None:intergenic |
CTCAATAGTACTCAGGGGAT+GGG | 0.492929 | 3.4:+87459644 | None:intergenic |
TGGAGAAACCCTAGAGGTGG+TGG | 0.498100 | 3.4:-87458084 | MS.gene013292:CDS |
AGGTGGTGGGCATGATGACC+AGG | 0.499009 | 3.4:-87458070 | MS.gene013292:CDS |
TCAATAGTACTCAGGGGATG+GGG | 0.499301 | 3.4:+87459645 | None:intergenic |
TACGAGCTTACCAGATTAGT+TGG | 0.499833 | 3.4:+87455880 | None:intergenic |
GGAGGTGAAGAGCATTTGAC+AGG | 0.499944 | 3.4:+87461144 | None:intergenic |
GTTATTATAGGTTGCATTGG+TGG | 0.504357 | 3.4:-87450240 | MS.gene013292:intron |
AGTGCAATTGTTGCAAGTAT+TGG | 0.507817 | 3.4:+87451558 | None:intergenic |
CTCAAGCTCAATAGTACTCA+GGG | 0.508852 | 3.4:+87459638 | None:intergenic |
CTCCATGAGGTGACCGAGGA+CGG | 0.509112 | 3.4:+87461123 | None:intergenic |
AACAGTGTAGAAGTGTTGTC+TGG | 0.510106 | 3.4:-87451615 | MS.gene013292:intron |
AGGACATGCACCTACCCAAA+TGG | 0.513721 | 3.4:+87450574 | None:intergenic |
TTGACAGGGTTGACCTCGAA+TGG | 0.516305 | 3.4:+87461159 | None:intergenic |
GAGCTCTGAGCGCACAATGA+AGG | 0.518579 | 3.4:-87459589 | MS.gene013292:intron |
TGGTTGTCGTAGTTACCCTC+AGG | 0.522559 | 3.4:-87452128 | MS.gene013292:intron |
ACTAAGAAGAGGTGGTGGAT+TGG | 0.523465 | 3.4:+87456132 | None:intergenic |
CCCTACGCTTGGATTTGTTG+TGG | 0.526991 | 3.4:-87460040 | MS.gene013292:CDS |
TCATTCTCACCTTGTCCATA+CGG | 0.527284 | 3.4:+87456092 | None:intergenic |
TGTGTTATTATAGGTTGCAT+TGG | 0.529811 | 3.4:-87450243 | MS.gene013292:intron |
CAGGAAATAGATCTCCGTAT+AGG | 0.530642 | 3.4:-87460260 | MS.gene013292:CDS |
TCTCAAGCTCAATAGTACTC+AGG | 0.531785 | 3.4:+87459637 | None:intergenic |
TTGAGACACATGCCAGGAAG+TGG | 0.535512 | 3.4:+87457858 | None:intergenic |
GTACTATTGAGCTTGAGAAA+CGG | 0.536291 | 3.4:-87459632 | MS.gene013292:CDS |
GGAGCCTGGAAGAGATCGGC+GGG | 0.539213 | 3.4:+87461058 | None:intergenic |
TTGATGCAGGGAAATCCATC+AGG | 0.539553 | 3.4:-87460509 | MS.gene013292:intron |
GCTCAATAGTACTCAGGGGA+TGG | 0.543858 | 3.4:+87459643 | None:intergenic |
CCGGCTTTGAGACACATGCC+AGG | 0.544203 | 3.4:+87457852 | None:intergenic |
ACTTTGCCAAGAATCAGATA+TGG | 0.546914 | 3.4:-87452579 | MS.gene013292:CDS |
TGATGCCGTAGATGCTAGGC+AGG | 0.547385 | 3.4:-87460449 | MS.gene013292:intron |
TTCATACAGACCTGGCATGC+GGG | 0.547866 | 3.4:+87450169 | None:intergenic |
AACAACAAGGGCATCCTGAG+TGG | 0.548017 | 3.4:-87458149 | MS.gene013292:CDS |
TCGGGAACGAATTTATGAAC+CGG | 0.548166 | 3.4:+87461037 | None:intergenic |
ACCACCTCTTCTTAGTGAAG+CGG | 0.548789 | 3.4:-87456125 | MS.gene013292:CDS |
TTCTCCAAAGTCCCGCCCCA+GGG | 0.549060 | 3.4:+87458100 | None:intergenic |
TATATCTATGATAGATGGGA+TGG | 0.550470 | 3.4:-87457032 | MS.gene013292:CDS |
AGCGGATTTGCTGAGCCGTA+TGG | 0.551133 | 3.4:-87456107 | MS.gene013292:CDS |
ATCTTGTCGAGCCTAATAAG+TGG | 0.551354 | 3.4:-87460477 | MS.gene013292:CDS |
CAGCAGAAAATTTGGTGGGG+TGG | 0.554124 | 3.4:+87458034 | None:intergenic |
ACTCGCCTGCCTAGCATCTA+CGG | 0.559225 | 3.4:+87460444 | None:intergenic |
ACAACATTGACCCTTGATCC+CGG | 0.560641 | 3.4:-87456160 | MS.gene013292:CDS |
TGTCTATATCTATGATAGAT+GGG | 0.560951 | 3.4:-87457036 | MS.gene013292:CDS |
GCAATTGTTGCAAGTATTGG+TGG | 0.562944 | 3.4:+87451561 | None:intergenic |
ACAACAAGGGCATCCTGAGT+GGG | 0.565557 | 3.4:-87458148 | MS.gene013292:CDS |
GTCATAGACACTGTTACAGA+TGG | 0.566110 | 3.4:-87460191 | MS.gene013292:CDS |
GATATGAAATCAGTCAGTGA+AGG | 0.567015 | 3.4:-87453638 | MS.gene013292:CDS |
GCCACCGATTTCGCCACCGA+CGG | 0.570582 | 3.4:+87461262 | None:intergenic |
CGTCCCTTACTCGAAGACCT+TGG | 0.571511 | 3.4:+87461221 | None:intergenic |
CCTGGCATGTGTCTCAAAGC+CGG | 0.571543 | 3.4:-87457852 | MS.gene013292:CDS |
ACAGTGGAAATTGACATTGC+TGG | 0.573505 | 3.4:-87457812 | MS.gene013292:CDS |
CAACATAAACACACCTGGCA+AGG | 0.574972 | 3.4:+87460143 | None:intergenic |
CAACCAAGGTCTTCGAGTAA+GGG | 0.576723 | 3.4:-87461224 | MS.gene013292:CDS |
GTGGTTTCAGCTCCTAAGGC+CGG | 0.577122 | 3.4:+87457833 | None:intergenic |
TTCTCCAGCAGAAAATTTGG+TGG | 0.580669 | 3.4:+87458029 | None:intergenic |
ATGATTCCGAATTATGCTAT+CGG | 0.582465 | 3.4:-87457005 | MS.gene013292:CDS |
TGAACACTTACGGTTGCAGT+TGG | 0.583134 | 3.4:+87459780 | None:intergenic |
TCTCCAGCAGAAAATTTGGT+GGG | 0.584482 | 3.4:+87458030 | None:intergenic |
ATAGTACTCAGGGGATGGGG+AGG | 0.585440 | 3.4:+87459648 | None:intergenic |
TTGCTGATGCCGTAGATGCT+AGG | 0.587239 | 3.4:-87460453 | MS.gene013292:CDS |
AAAAGCATCTTTCATTAACA+TGG | 0.587316 | 3.4:+87460214 | None:intergenic |
CTTCTCCGCCACGTTTAGGA+CGG | 0.588923 | 3.4:+87461285 | None:intergenic |
TTTGTGGCTTGATTGCGATA+GGG | 0.588994 | 3.4:-87460850 | MS.gene013292:CDS |
CGCCATAACCGTCCTAAACG+TGG | 0.591771 | 3.4:-87461293 | MS.gene013292:CDS |
TGTATAGGAGTGCATTGGTA+CGG | 0.593084 | 3.4:-87455980 | MS.gene013292:intron |
TGTTCTCATAGATCAGATGA+AGG | 0.594505 | 3.4:-87459964 | MS.gene013292:CDS |
AACCGGAGCCTGGAAGAGAT+CGG | 0.597445 | 3.4:+87461054 | None:intergenic |
CCACAACAAATCCAAGCGTA+GGG | 0.598465 | 3.4:+87460040 | None:intergenic |
AGTGGCAGTGATGAGCAGAA+TGG | 0.598467 | 3.4:-87452629 | MS.gene013292:CDS |
TTGTGCGCTCAGAGCTCATG+CGG | 0.601824 | 3.4:+87459595 | None:intergenic |
CCCTGGATCAATATCAGAAG+CGG | 0.602820 | 3.4:-87451590 | MS.gene013292:CDS |
AACATACTCTCACGCAACCA+AGG | 0.603024 | 3.4:-87461238 | MS.gene013292:CDS |
ATTTGTTGTGGAAAGATACT+GGG | 0.603230 | 3.4:-87460028 | MS.gene013292:CDS |
GCAATTGTGCAAGAACAACA+AGG | 0.605847 | 3.4:-87458162 | MS.gene013292:CDS |
TTTCTGCTGGAGAATCAGGA+TGG | 0.607893 | 3.4:-87458020 | MS.gene013292:CDS |
ATATGAAATCAGTCAGTGAA+GGG | 0.608953 | 3.4:-87453637 | MS.gene013292:CDS |
CTCCAGCAGAAAATTTGGTG+GGG | 0.610625 | 3.4:+87458031 | None:intergenic |
GTGATGAGCAGAATGGAACT+GGG | 0.610637 | 3.4:-87452622 | MS.gene013292:CDS |
TGGTTGACATTGTAGCTTGG+TGG | 0.612034 | 3.4:+87450594 | None:intergenic |
TCCACAACAAATCCAAGCGT+AGG | 0.614617 | 3.4:+87460039 | None:intergenic |
GCTTCACTAAGAAGAGGTGG+TGG | 0.616934 | 3.4:+87456127 | None:intergenic |
TGTGCATATATTCCCCACTC+AGG | 0.617094 | 3.4:+87458135 | None:intergenic |
TTTGCTGAGCCGTATGGACA+AGG | 0.617926 | 3.4:-87456101 | MS.gene013292:intron |
GGACATTAGAGGAAGAAGCT+AGG | 0.618034 | 3.4:-87460890 | MS.gene013292:CDS |
ACAATTGTATAGGAGTGCAT+TGG | 0.623633 | 3.4:-87455985 | MS.gene013292:intron |
AGGCGTTGCTAATTTCAGCT+GGG | 0.625767 | 3.4:-87459944 | MS.gene013292:CDS |
TCCGCTTCACTAAGAAGAGG+TGG | 0.626034 | 3.4:+87456124 | None:intergenic |
GGAGAAACCCTAGAGGTGGT+GGG | 0.628332 | 3.4:-87458083 | MS.gene013292:CDS |
TGACAGAAATATGTGGTACC+CGG | 0.630502 | 3.4:-87450194 | MS.gene013292:CDS |
AAGAAGCTAGGCGGTGTCAG+TGG | 0.631749 | 3.4:-87460878 | MS.gene013292:CDS |
CGAGTCACCGTAACAATGGG+TGG | 0.636285 | 3.4:-87461319 | None:intergenic |
TGGCTTGATTGCGATAGGGA+AGG | 0.636553 | 3.4:-87460846 | MS.gene013292:CDS |
GGTTCATAAATTCGTTCCCG+AGG | 0.636955 | 3.4:-87461035 | MS.gene013292:intron |
ATTCATACAGACCTGGCATG+CGG | 0.637245 | 3.4:+87450168 | None:intergenic |
AAATGGTTGACATTGTAGCT+TGG | 0.638777 | 3.4:+87450591 | None:intergenic |
CATGAGGTGACCGAGGACGG+AGG | 0.638882 | 3.4:+87461126 | None:intergenic |
CGGAGCCTGGAAGAGATCGG+CGG | 0.642990 | 3.4:+87461057 | None:intergenic |
CCGCTTCTGATATTGATCCA+GGG | 0.647564 | 3.4:+87451590 | None:intergenic |
AAGTTATCAGTTTCTGTACG+AGG | 0.650574 | 3.4:+87458970 | None:intergenic |
ATGTGGGAGGGTGATTCTAG+AGG | 0.651463 | 3.4:-87457774 | MS.gene013292:intron |
GCCGTCGGTGGCGAAATCGG+TGG | 0.652223 | 3.4:-87461263 | MS.gene013292:CDS |
AAACGTGGCGGAGAAGCCGT+CGG | 0.653200 | 3.4:-87461278 | MS.gene013292:CDS |
TGTTATGGGATATGATGACA+TGG | 0.653335 | 3.4:-87455089 | MS.gene013292:CDS |
ACACAGTTGACAGAAATATG+TGG | 0.656276 | 3.4:-87450201 | MS.gene013292:CDS |
CAACAAGGGCATCCTGAGTG+GGG | 0.661234 | 3.4:-87458147 | MS.gene013292:CDS |
CGTGGCGGAGAAGCCGTCGG+TGG | 0.661549 | 3.4:-87461275 | MS.gene013292:CDS |
GAACTGGGGTAGTTGTTCGA+CGG | 0.664560 | 3.4:-87452607 | MS.gene013292:CDS |
ACAACGGTTGCTGGACCCTG+GGG | 0.669856 | 3.4:-87458115 | MS.gene013292:CDS |
CTTTGGAGAAACCCTAGAGG+TGG | 0.670933 | 3.4:-87458087 | MS.gene013292:CDS |
CAATTGTGCAAGAACAACAA+GGG | 0.671925 | 3.4:-87458161 | MS.gene013292:CDS |
ACAACAGAAACTGTATGAGT+TGG | 0.672041 | 3.4:-87457888 | MS.gene013292:intron |
AAATCCGCTTCACTAAGAAG+AGG | 0.673563 | 3.4:+87456121 | None:intergenic |
GTGCCTTCAGGTATAAACTG+TGG | 0.675508 | 3.4:-87453691 | MS.gene013292:intron |
GATAACTGATGAAACCACCT+TGG | 0.679483 | 3.4:+87458992 | None:intergenic |
AGCAATGTCAATTTCCACTG+TGG | 0.691502 | 3.4:+87457814 | None:intergenic |
AGGTGACAAAAGTAACACCA+AGG | 0.692380 | 3.4:-87459686 | MS.gene013292:CDS |
GGTGACAAAAGTAACACCAA+GGG | 0.692729 | 3.4:-87459685 | MS.gene013292:CDS |
CAAGGTCTTCGAGTAAGGGA+CGG | 0.694430 | 3.4:-87461220 | MS.gene013292:CDS |
GAGGTGAAGAGCATTTGACA+GGG | 0.696749 | 3.4:+87461145 | None:intergenic |
GCTCATGCGGAAGTATCGTG+AGG | 0.700588 | 3.4:+87459608 | None:intergenic |
CAAGCTCCATGAGGTGACCG+AGG | 0.701223 | 3.4:+87461119 | None:intergenic |
GTTATGGGATATGATGACAT+GGG | 0.706693 | 3.4:-87455088 | MS.gene013292:CDS |
CATTAGAGGAAGAAGCTAGG+CGG | 0.714956 | 3.4:-87460887 | MS.gene013292:CDS |
CGTCGAAGTCAAGCTCCATG+AGG | 0.719905 | 3.4:+87461110 | None:intergenic |
GTGGCAGAAGAACTCTACCA+AGG | 0.723450 | 3.4:-87459009 | MS.gene013292:CDS |
TGATGAGCAGAATGGAACTG+GGG | 0.724666 | 3.4:-87452621 | MS.gene013292:CDS |
TCAAGCTCAATAGTACTCAG+GGG | 0.728007 | 3.4:+87459639 | None:intergenic |
AATATATGAGATGTGCATCG+AGG | 0.728640 | 3.4:-87459805 | MS.gene013292:CDS |
CATAACCGTCCTAAACGTGG+CGG | 0.734591 | 3.4:-87461290 | MS.gene013292:CDS |
TTATGGGATATGATGACATG+GGG | 0.743285 | 3.4:-87455087 | MS.gene013292:intron |
AGTGGGGAATATATGCACAA+CGG | 0.747288 | 3.4:-87458131 | MS.gene013292:CDS |
GCAGAAGAACTCTACCAAGG+TGG | 0.750268 | 3.4:-87459006 | MS.gene013292:CDS |
GGACTTTGGAGAAACCCTAG+AGG | 0.766268 | 3.4:-87458090 | MS.gene013292:CDS |
CTTAGGAGCTGAAACCACAG+TGG | 0.789942 | 3.4:-87457828 | MS.gene013292:CDS |
AGTTATCGATGTGTGTACTG+CGG | 0.798572 | 3.4:-87460805 | MS.gene013292:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 87450180 | 87461326 | 87450180 | ID=MS.gene013292 |
chr3.4 | mRNA | 87450180 | 87461326 | 87450180 | ID=MS.gene013292.t1;Parent=MS.gene013292 |
chr3.4 | exon | 87461036 | 87461326 | 87461036 | ID=MS.gene013292.t1.exon1;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87461036 | 87461326 | 87461036 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87460753 | 87460931 | 87460753 | ID=MS.gene013292.t1.exon2;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87460753 | 87460931 | 87460753 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87460450 | 87460522 | 87460450 | ID=MS.gene013292.t1.exon3;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87460450 | 87460522 | 87460450 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87460157 | 87460279 | 87460157 | ID=MS.gene013292.t1.exon4;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87460157 | 87460279 | 87460157 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87459943 | 87460064 | 87459943 | ID=MS.gene013292.t1.exon5;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87459943 | 87460064 | 87459943 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87459791 | 87459863 | 87459791 | ID=MS.gene013292.t1.exon6;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87459791 | 87459863 | 87459791 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87459590 | 87459706 | 87459590 | ID=MS.gene013292.t1.exon7;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87459590 | 87459706 | 87459590 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87458948 | 87459031 | 87458948 | ID=MS.gene013292.t1.exon8;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87458948 | 87459031 | 87458948 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87458005 | 87458184 | 87458005 | ID=MS.gene013292.t1.exon9;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87458005 | 87458184 | 87458005 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87457775 | 87457903 | 87457775 | ID=MS.gene013292.t1.exon10;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87457775 | 87457903 | 87457775 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87456998 | 87457072 | 87456998 | ID=MS.gene013292.t1.exon11;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87456998 | 87457072 | 87456998 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87456102 | 87456191 | 87456102 | ID=MS.gene013292.t1.exon12;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87456102 | 87456191 | 87456102 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87455891 | 87455995 | 87455891 | ID=MS.gene013292.t1.exon13;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87455891 | 87455995 | 87455891 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87455088 | 87455122 | 87455088 | ID=MS.gene013292.t1.exon14;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87455088 | 87455122 | 87455088 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87453574 | 87453703 | 87453574 | ID=MS.gene013292.t1.exon15;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87453574 | 87453703 | 87453574 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87452735 | 87452787 | 87452735 | ID=MS.gene013292.t1.exon16;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87452735 | 87452787 | 87452735 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87452562 | 87452649 | 87452562 | ID=MS.gene013292.t1.exon17;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87452562 | 87452649 | 87452562 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87452129 | 87452167 | 87452129 | ID=MS.gene013292.t1.exon18;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87452129 | 87452167 | 87452129 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87451554 | 87451632 | 87451554 | ID=MS.gene013292.t1.exon19;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87451554 | 87451632 | 87451554 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87450589 | 87450633 | 87450589 | ID=MS.gene013292.t1.exon20;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87450589 | 87450633 | 87450589 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
chr3.4 | exon | 87450180 | 87450252 | 87450180 | ID=MS.gene013292.t1.exon21;Parent=MS.gene013292.t1 |
chr3.4 | CDS | 87450180 | 87450252 | 87450180 | ID=cds.MS.gene013292.t1;Parent=MS.gene013292.t1 |
Gene Sequence |
Protein sequence |