Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06375.t1 | XP_024633621.1 | 96.9 | 929 | 29 | 0 | 1 | 929 | 1 | 929 | 0.00E+00 | 1797.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06375.t1 | Q9LVP1 | 69.9 | 931 | 263 | 5 | 2 | 930 | 5 | 920 | 0.0e+00 | 1298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06375.t1 | A0A396IZ64 | 96.9 | 929 | 29 | 0 | 1 | 929 | 1 | 929 | 0.0e+00 | 1797.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049250 | MS.gene06375 | 0.90336 | 3.76E-79 | -1.69E-46 |
| MS.gene049251 | MS.gene06375 | 0.951973 | 6.57E-110 | -1.69E-46 |
| MS.gene049596 | MS.gene06375 | 0.839508 | 1.52E-57 | -1.69E-46 |
| MS.gene049844 | MS.gene06375 | 0.804922 | 1.71E-49 | -1.69E-46 |
| MS.gene050297 | MS.gene06375 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene05124 | MS.gene06375 | 0.857509 | 1.56E-62 | -1.69E-46 |
| MS.gene051914 | MS.gene06375 | 0.825065 | 5.74E-54 | -1.69E-46 |
| MS.gene052143 | MS.gene06375 | 0.801987 | 6.95E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene06375 | 0.818819 | 1.61E-52 | -1.69E-46 |
| MS.gene053173 | MS.gene06375 | 0.84527 | 4.51E-59 | -1.69E-46 |
| MS.gene053416 | MS.gene06375 | 0.82675 | 2.29E-54 | -1.69E-46 |
| MS.gene053417 | MS.gene06375 | 0.821556 | 3.79E-53 | -1.69E-46 |
| MS.gene054551 | MS.gene06375 | 0.829534 | 4.88E-55 | -1.69E-46 |
| MS.gene054593 | MS.gene06375 | 0.836833 | 7.42E-57 | -1.69E-46 |
| MS.gene054633 | MS.gene06375 | 0.829473 | 5.05E-55 | -1.69E-46 |
| MS.gene05470 | MS.gene06375 | -0.80464 | 1.96E-49 | -1.69E-46 |
| MS.gene055251 | MS.gene06375 | 0.809663 | 1.69E-50 | -1.69E-46 |
| MS.gene056266 | MS.gene06375 | -0.834338 | 3.17E-56 | -1.69E-46 |
| MS.gene05640 | MS.gene06375 | 0.829531 | 4.89E-55 | -1.69E-46 |
| MS.gene056526 | MS.gene06375 | 0.81669 | 4.86E-52 | -1.69E-46 |
| MS.gene058818 | MS.gene06375 | 0.813766 | 2.17E-51 | -1.69E-46 |
| MS.gene059304 | MS.gene06375 | 0.812667 | 3.78E-51 | -1.69E-46 |
| MS.gene06093 | MS.gene06375 | 0.842691 | 2.22E-58 | -1.69E-46 |
| MS.gene061044 | MS.gene06375 | 0.824509 | 7.77E-54 | -1.69E-46 |
| MS.gene061260 | MS.gene06375 | 0.822301 | 2.55E-53 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06375.t1 | MTR_3g096640 | 94.864 | 954 | 24 | 1 | 1 | 929 | 1 | 954 | 0.0 | 1893 |
| MS.gene06375.t1 | MTR_3g084800 | 36.421 | 637 | 377 | 12 | 8 | 642 | 6 | 616 | 4.82e-123 | 394 |
| MS.gene06375.t1 | MTR_3g084800 | 36.159 | 578 | 345 | 10 | 67 | 642 | 1 | 556 | 3.67e-109 | 355 |
| MS.gene06375.t1 | MTR_5g061930 | 40.749 | 427 | 230 | 11 | 175 | 589 | 19 | 434 | 7.49e-89 | 290 |
| MS.gene06375.t1 | MTR_5g061940 | 35.897 | 312 | 171 | 10 | 52 | 348 | 4 | 301 | 2.55e-50 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06375.t1 | AT5G63920 | 68.240 | 932 | 277 | 7 | 2 | 930 | 5 | 920 | 0.0 | 1309 |
| MS.gene06375.t1 | AT2G32000 | 38.312 | 616 | 360 | 9 | 6 | 619 | 5 | 602 | 1.12e-125 | 401 |
| MS.gene06375.t1 | AT2G32000 | 38.104 | 559 | 330 | 7 | 63 | 619 | 31 | 575 | 1.79e-111 | 363 |
| MS.gene06375.t1 | AT4G31210 | 22.977 | 618 | 369 | 21 | 116 | 671 | 548 | 1120 | 1.87e-17 | 88.6 |
| MS.gene06375.t1 | AT4G31210 | 22.977 | 618 | 369 | 21 | 116 | 671 | 544 | 1116 | 3.75e-17 | 87.4 |
| MS.gene06375.t1 | AT4G31210 | 22.977 | 618 | 369 | 21 | 116 | 671 | 548 | 1120 | 4.16e-17 | 87.4 |
Find 261 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAACTTGAATTGAATT+AGG | 0.230264 | 3.1:+77059755 | None:intergenic |
| TGATTCTCCAGCAGAAAATT+TGG | 0.240475 | 3.1:+77067176 | None:intergenic |
| TTGGTTCATTCCAGGATATT+GGG | 0.243430 | 3.1:+77057962 | None:intergenic |
| TTAGCACCATATCTGATTCT+TGG | 0.264502 | 3.1:+77061696 | None:intergenic |
| GTTGGTTCATTCCAGGATAT+TGG | 0.280397 | 3.1:+77057961 | None:intergenic |
| CTCATGAACCAGAAGAGTTT+TGG | 0.285949 | 3.1:-77069142 | MS.gene06375:CDS |
| TTGATTAACCAAAACTCTTC+TGG | 0.293377 | 3.1:+77069134 | None:intergenic |
| TAAAAGCAAAGCTGAAGTTT+TGG | 0.299296 | 3.1:-77062738 | MS.gene06375:CDS |
| CATTAACATGGTCTGAAATC+TGG | 0.304374 | 3.1:+77069372 | None:intergenic |
| GTTGGTTGTTCGCCACTTCC+TGG | 0.316935 | 3.1:-77067023 | MS.gene06375:CDS |
| TCCAGGATATTGGGGATTCC+TGG | 0.330018 | 3.1:+77057971 | None:intergenic |
| TAGCACCTTCTGTCAGAAAT+AGG | 0.331034 | 3.1:+77056109 | None:intergenic |
| GATCACACGAGTGCCATTTC+CGG | 0.341045 | 3.1:+77070224 | None:intergenic |
| TGTTCGCACTGTCAAGAAAC+AGG | 0.342940 | 3.1:-77058032 | MS.gene06375:CDS |
| CTTGCCTTGGGTTGGTATGA+TGG | 0.344679 | 3.1:+77058060 | None:intergenic |
| GTTGGTATGATGGGCGTTGC+TGG | 0.346475 | 3.1:+77058070 | None:intergenic |
| GTTGGTATGATGGGCGTTGC+TGG | 0.346475 | 3.1:+77058112 | None:intergenic |
| TGGACCCTGGGGCGGGACTT+TGG | 0.348552 | 3.1:-77067254 | MS.gene06375:CDS |
| TCGACGATCGTTACCGGAAA+TGG | 0.351681 | 3.1:-77070237 | MS.gene06375:CDS |
| ATGTCTATATCTATGATAGA+TGG | 0.354533 | 3.1:-77066191 | MS.gene06375:CDS |
| CCTGGAATGAACCAACAAAA+TGG | 0.357678 | 3.1:-77057954 | MS.gene06375:intron |
| GATTTGTTGTGGAAAGATAC+TGG | 0.357933 | 3.1:-77069175 | MS.gene06375:CDS |
| TGATCCAGCCGATCTCTTCC+AGG | 0.358615 | 3.1:-77070206 | MS.gene06375:CDS |
| TGTTAAACCCTAGGATAAAA+AGG | 0.363300 | 3.1:-77070066 | MS.gene06375:intron |
| GAAATACTGTCTTGAGTTAT+GGG | 0.363324 | 3.1:-77069312 | MS.gene06375:CDS |
| TTGACTTCGACGATCGTTAC+CGG | 0.368843 | 3.1:-77070243 | MS.gene06375:CDS |
| TTGAATTGAATTAGGTAAAC+AGG | 0.374364 | 3.1:+77059763 | None:intergenic |
| AATATATGCACAACGGTTGC+TGG | 0.376663 | 3.1:-77067274 | MS.gene06375:CDS |
| GGTGGATGGGTGGATGAGCC+TGG | 0.378403 | 3.1:+77067202 | None:intergenic |
| GTAGGGTGAGGCACTTGTTA+TGG | 0.378652 | 3.1:-77064235 | MS.gene06375:intron |
| TACTATTGAGCTTGAGAAAC+GGG | 0.379792 | 3.1:-77068781 | MS.gene06375:CDS |
| CGAATTTATGAACCGGAGCC+TGG | 0.380865 | 3.1:+77070188 | None:intergenic |
| AGAAATACTGTCTTGAGTTA+TGG | 0.383690 | 3.1:-77069313 | MS.gene06375:CDS |
| CACAACGGTTGCTGGACCCT+GGG | 0.387322 | 3.1:-77067266 | MS.gene06375:CDS |
| TAGGGTGAGGCACTTGTTAT+GGG | 0.387423 | 3.1:-77064234 | MS.gene06375:CDS |
| CGCCACGTTTAGGACGGTTA+TGG | 0.388143 | 3.1:+77070435 | None:intergenic |
| GCATCAGCAAACCACTTATT+AGG | 0.391602 | 3.1:+77069612 | None:intergenic |
| AAGCTACAATGTCAACCATT+TGG | 0.394455 | 3.1:-77059716 | MS.gene06375:CDS |
| GAATTATGCTATCGGTGAAC+AGG | 0.404993 | 3.1:-77066151 | MS.gene06375:intron |
| TGCGAACAAACTGCTTGCCT+TGG | 0.406548 | 3.1:+77058047 | None:intergenic |
| AGAAAATTTGGTGGGGTGGA+TGG | 0.407631 | 3.1:+77067188 | None:intergenic |
| GGATACTTTGGCTTCTCCCT+TGG | 0.408493 | 3.1:+77068819 | None:intergenic |
| ACGGCTTCTCCGCCACGTTT+AGG | 0.410568 | 3.1:+77070425 | None:intergenic |
| AGCTACAATGTCAACCATTT+GGG | 0.410703 | 3.1:-77059715 | MS.gene06375:intron |
| ACTTGCAACAATTGCACTCC+TGG | 0.413027 | 3.1:-77060684 | MS.gene06375:intron |
| ACCGCTTCTGATATTGATCC+AGG | 0.413768 | 3.1:+77060720 | None:intergenic |
| CACTGTGGTTTCAGCTCCTA+AGG | 0.415875 | 3.1:+77066982 | None:intergenic |
| CTCCGTCCTCGGTCACCTCA+TGG | 0.415907 | 3.1:-77070269 | MS.gene06375:CDS |
| GCAACCAAGGTCTTCGAGTA+AGG | 0.416161 | 3.1:-77070369 | MS.gene06375:CDS |
| GAAAATTTGGTGGGGTGGAT+GGG | 0.416182 | 3.1:+77067189 | None:intergenic |
| AGACATCAGTGTCCACGATT+GGG | 0.417541 | 3.1:+77056049 | None:intergenic |
| GTGTTTCACACCAACTAATC+TGG | 0.419328 | 3.1:-77065024 | MS.gene06375:intron |
| TCATCATGTCCACCACCTCT+AGG | 0.420554 | 3.1:+77067225 | None:intergenic |
| ACCAGATCTTAGAGCAGTTA+TGG | 0.422804 | 3.1:-77062792 | MS.gene06375:CDS |
| TGGCCGTGGATCTCGTGGTA+GGG | 0.422988 | 3.1:-77056185 | MS.gene06375:CDS |
| GGATATTAAGAGGACATTAG+AGG | 0.423141 | 3.1:-77070045 | MS.gene06375:CDS |
| AGGGGATGGGGAGGATACTT+TGG | 0.428104 | 3.1:+77068807 | None:intergenic |
| TTACCTCTGTTACAGAATAT+GGG | 0.428484 | 3.1:-77056290 | MS.gene06375:intron |
| GAAGCCGTCGGTGGCGAAAT+CGG | 0.430539 | 3.1:-77070410 | MS.gene06375:CDS |
| AGAAGTGTTGTCTGGCTCCC+TGG | 0.433929 | 3.1:-77060738 | MS.gene06375:CDS |
| TCCATAACTGCTCTAAGATC+TGG | 0.434712 | 3.1:+77062791 | None:intergenic |
| TAGACCTTGGGTTGGTATGA+TGG | 0.436659 | 3.1:+77058102 | None:intergenic |
| AGTGATGAGCAGAATGGAAC+TGG | 0.439744 | 3.1:-77061746 | MS.gene06375:CDS |
| CTTGAGTTATGGGCCTTGCC+AGG | 0.448133 | 3.1:-77069302 | MS.gene06375:intron |
| TGGTGAAAGTAGCACCTATA+CGG | 0.448798 | 3.1:+77069392 | None:intergenic |
| GCATCCAACCGTGGTCGAAA+TGG | 0.452609 | 3.1:-77056208 | MS.gene06375:CDS |
| GCTCTCTTAATAGTAAGATT+CGG | 0.452863 | 3.1:+77069921 | None:intergenic |
| ATTTGAACAGAGAAACTACT+TGG | 0.453097 | 3.1:-77066214 | MS.gene06375:intron |
| TGTGTCTCAAAGCCGGCCTT+AGG | 0.457715 | 3.1:-77066998 | MS.gene06375:CDS |
| GTGGCCGTGGATCTCGTGGT+AGG | 0.459589 | 3.1:-77056186 | MS.gene06375:CDS |
| CTGGTTGATGCAGTAGACCT+TGG | 0.462492 | 3.1:+77058089 | None:intergenic |
| TTTCGACCACGGTTGGATGC+TGG | 0.465860 | 3.1:+77056211 | None:intergenic |
| GGATCAAGGGTCAATGTTGT+TGG | 0.465981 | 3.1:+77065317 | None:intergenic |
| AAGGCGTTGCTAATTTCAGC+TGG | 0.470283 | 3.1:-77069091 | MS.gene06375:CDS |
| TGGTTGATGCAGTAGACCTT+GGG | 0.471981 | 3.1:+77058090 | None:intergenic |
| AGCCGATCTCTTCCAGGCTC+CGG | 0.472968 | 3.1:-77070200 | MS.gene06375:CDS |
| TTTCTCCAAAGTCCCGCCCC+AGG | 0.474033 | 3.1:+77067249 | None:intergenic |
| GCACAACGGTTGCTGGACCC+TGG | 0.475049 | 3.1:-77067267 | MS.gene06375:CDS |
| ATGCTCTTCACCTCCGTCCT+CGG | 0.475163 | 3.1:-77070280 | MS.gene06375:CDS |
| ACGGTTGCTGGACCCTGGGG+CGG | 0.476317 | 3.1:-77067262 | MS.gene06375:CDS |
| GAATTCAACTACACCATTCG+AGG | 0.476492 | 3.1:-77070316 | MS.gene06375:CDS |
| CGGTTGCTGGACCCTGGGGC+GGG | 0.479962 | 3.1:-77067261 | MS.gene06375:CDS |
| GCGAACAAACTGCTTGCCTT+GGG | 0.482226 | 3.1:+77058048 | None:intergenic |
| TGGCTACAGTTCCCTACGCT+TGG | 0.482965 | 3.1:-77069197 | MS.gene06375:intron |
| CATCATGTCCACCACCTCTA+GGG | 0.487635 | 3.1:+77067226 | None:intergenic |
| GAGACATCAGTGTCCACGAT+TGG | 0.488925 | 3.1:+77056048 | None:intergenic |
| TGTTCACCGATAGCATAATT+CGG | 0.491455 | 3.1:+77066153 | None:intergenic |
| AATTTGGTGGGGTGGATGGG+TGG | 0.492316 | 3.1:+77067192 | None:intergenic |
| TTGCCTTGGGTTGGTATGAT+GGG | 0.492759 | 3.1:+77058061 | None:intergenic |
| CTCAATAGTACTCAGGGGAT+GGG | 0.492929 | 3.1:+77068794 | None:intergenic |
| CTTCACAGACTCGACGCTCC+AGG | 0.496741 | 3.1:-77057989 | MS.gene06375:CDS |
| GGCCGTGGATCTCGTGGTAG+GGG | 0.497650 | 3.1:-77056184 | MS.gene06375:CDS |
| TCAATAGTACTCAGGGGATG+GGG | 0.499301 | 3.1:+77068795 | None:intergenic |
| TACGAGCTTACCAGATTAGT+TGG | 0.499833 | 3.1:+77065014 | None:intergenic |
| GGAGGTGAAGAGCATTTGAC+AGG | 0.499944 | 3.1:+77070288 | None:intergenic |
| GGTACCGGCTCCCGCATGCC+AGG | 0.500894 | 3.1:-77059305 | MS.gene06375:intron |
| CGTGGTCGAAATGGTGGCCG+TGG | 0.503890 | 3.1:-77056199 | MS.gene06375:CDS |
| GTTATTATAGGTTGCATTGG+TGG | 0.504357 | 3.1:-77059365 | MS.gene06375:intron |
| ATGGATCTAATTCTTCTAAC+GGG | 0.507140 | 3.1:-77056156 | MS.gene06375:CDS |
| AGTGCAATTGTTGCAAGTAT+TGG | 0.507817 | 3.1:+77060689 | None:intergenic |
| CTCAAGCTCAATAGTACTCA+GGG | 0.508852 | 3.1:+77068788 | None:intergenic |
| CTCCATGAGGTGACCGAGGA+CGG | 0.509112 | 3.1:+77070267 | None:intergenic |
| AACAGTGTAGAAGTGTTGTC+TGG | 0.510106 | 3.1:-77060746 | MS.gene06375:intron |
| AAGACATGCACCTACCCAAA+TGG | 0.513721 | 3.1:+77059701 | None:intergenic |
| GCCACCATTTCGACCACGGT+TGG | 0.515814 | 3.1:+77056204 | None:intergenic |
| TTGACAGGGTTGACCTCGAA+TGG | 0.516305 | 3.1:+77070303 | None:intergenic |
| TTCTACGCATGTCTAACAAA+GGG | 0.516402 | 3.1:-77056620 | MS.gene06375:CDS |
| AGACCTTGGGTTGGTATGAT+GGG | 0.517932 | 3.1:+77058103 | None:intergenic |
| GAGCTCTGAGCGCACAATGA+AGG | 0.518579 | 3.1:-77068739 | MS.gene06375:intron |
| TCCAGGAATCCCCAATATCC+TGG | 0.519396 | 3.1:-77057972 | MS.gene06375:CDS |
| ACTAAGAAGAGGTGGTGGAT+TGG | 0.523465 | 3.1:+77065286 | None:intergenic |
| GGAGCCTGGAAGAGATCGGC+TGG | 0.523556 | 3.1:+77070202 | None:intergenic |
| CCCTACGCTTGGATTTGTTG+TGG | 0.526991 | 3.1:-77069186 | MS.gene06375:CDS |
| TCATTCTCACCTTGTCCATA+CGG | 0.527284 | 3.1:+77065246 | None:intergenic |
| TGTGTTATTATAGGTTGCAT+TGG | 0.529811 | 3.1:-77059368 | MS.gene06375:intron |
| TGGTTCATTCCAGGATATTG+GGG | 0.530170 | 3.1:+77057963 | None:intergenic |
| CAGGAAATAGATCTCCGTAT+AGG | 0.530642 | 3.1:-77069406 | MS.gene06375:CDS |
| TCTCAAGCTCAATAGTACTC+AGG | 0.531785 | 3.1:+77068787 | None:intergenic |
| CAGACCTGGCATGCGGGAGC+CGG | 0.534574 | 3.1:+77059301 | None:intergenic |
| TTGAGACACATGCCAGGAAG+TGG | 0.535512 | 3.1:+77067011 | None:intergenic |
| GTACTATTGAGCTTGAGAAA+CGG | 0.536291 | 3.1:-77068782 | MS.gene06375:CDS |
| TTGATGCAGGGAAATCCATC+AGG | 0.539553 | 3.1:-77069655 | MS.gene06375:intron |
| GCTCAATAGTACTCAGGGGA+TGG | 0.543858 | 3.1:+77068793 | None:intergenic |
| CCGGCTTTGAGACACATGCC+AGG | 0.544203 | 3.1:+77067005 | None:intergenic |
| ACAAACTGCTTGCCTTGGGT+TGG | 0.544791 | 3.1:+77058052 | None:intergenic |
| TCTGTTGCATGCAGCTCGTG+TGG | 0.545763 | 3.1:-77056695 | MS.gene06375:CDS |
| ACTTTGCCAAGAATCAGATA+TGG | 0.546914 | 3.1:-77061702 | MS.gene06375:CDS |
| TTCATACAGACCTGGCATGC+GGG | 0.547866 | 3.1:+77059295 | None:intergenic |
| AACAACAAGGGCATCCTGAG+TGG | 0.548017 | 3.1:-77067299 | MS.gene06375:CDS |
| TCGGGAACGAATTTATGAAC+CGG | 0.548166 | 3.1:+77070181 | None:intergenic |
| ACCACCTCTTCTTAGTGAAG+CGG | 0.548789 | 3.1:-77065279 | MS.gene06375:CDS |
| TTCTCCAAAGTCCCGCCCCA+GGG | 0.549060 | 3.1:+77067250 | None:intergenic |
| TTGCTGATGCTGTAGATGCT+AGG | 0.549077 | 3.1:-77069599 | MS.gene06375:CDS |
| TATATCTATGATAGATGGGA+TGG | 0.550470 | 3.1:-77066186 | MS.gene06375:CDS |
| GACATCAGTGTCCACGATTG+GGG | 0.551070 | 3.1:+77056050 | None:intergenic |
| AGCGGATTTGCTGAGCCGTA+TGG | 0.551133 | 3.1:-77065261 | MS.gene06375:CDS |
| ATCTTGTCGAGCCTAATAAG+TGG | 0.551354 | 3.1:-77069623 | MS.gene06375:CDS |
| TCTTGCAGATTAAATAGAGT+TGG | 0.552153 | 3.1:-77061770 | MS.gene06375:intron |
| CAGCAGAAAATTTGGTGGGG+TGG | 0.554124 | 3.1:+77067184 | None:intergenic |
| ACAACATTGACCCTTGATCC+CGG | 0.560641 | 3.1:-77065314 | MS.gene06375:CDS |
| TGTCTATATCTATGATAGAT+GGG | 0.560951 | 3.1:-77066190 | MS.gene06375:CDS |
| TGGATGTCGTAGTTACCCTC+AGG | 0.561236 | 3.1:-77061253 | MS.gene06375:intron |
| TGATGCTGTAGATGCTAGGC+AGG | 0.561764 | 3.1:-77069595 | MS.gene06375:intron |
| GCAATTGTTGCAAGTATTGG+TGG | 0.562944 | 3.1:+77060692 | None:intergenic |
| ACAACAAGGGCATCCTGAGT+GGG | 0.565557 | 3.1:-77067298 | MS.gene06375:CDS |
| GTCATAGACACTGTTACAGA+TGG | 0.566110 | 3.1:-77069337 | MS.gene06375:CDS |
| GTTATGGCGCGTCCACCCAT+TGG | 0.566662 | 3.1:+77070451 | None:intergenic |
| GATATGAAATCAGTCAGTGA+AGG | 0.567015 | 3.1:-77062764 | MS.gene06375:CDS |
| GATGAACTCAACAATGGCAG+TGG | 0.568984 | 3.1:-77056265 | MS.gene06375:CDS |
| GCCACCGATTTCGCCACCGA+CGG | 0.570582 | 3.1:+77070406 | None:intergenic |
| CGTCCCTTACTCGAAGACCT+TGG | 0.571511 | 3.1:+77070365 | None:intergenic |
| CCTGGCATGTGTCTCAAAGC+CGG | 0.571543 | 3.1:-77067005 | MS.gene06375:CDS |
| TTGACAGAAATATGTGGTAC+CGG | 0.572024 | 3.1:-77059320 | MS.gene06375:CDS |
| GGGACATTCGTGTCAGCCAC+TGG | 0.573475 | 3.1:-77056136 | MS.gene06375:CDS |
| ACAGTGGAAATTGACATTGC+TGG | 0.573505 | 3.1:-77066965 | MS.gene06375:CDS |
| CAACATAAACACACCTGGCA+AGG | 0.574972 | 3.1:+77069289 | None:intergenic |
| CAACCAAGGTCTTCGAGTAA+GGG | 0.576723 | 3.1:-77070368 | MS.gene06375:CDS |
| GTGGTTTCAGCTCCTAAGGC+CGG | 0.577122 | 3.1:+77066986 | None:intergenic |
| GAACTCAACAATGGCAGTGG+AGG | 0.578224 | 3.1:-77056262 | MS.gene06375:CDS |
| TTCTCCAGCAGAAAATTTGG+TGG | 0.580669 | 3.1:+77067179 | None:intergenic |
| TGGAGAAACCCTAGAGGTGG+TGG | 0.580833 | 3.1:-77067234 | MS.gene06375:CDS |
| ATGATTCCGAATTATGCTAT+CGG | 0.582465 | 3.1:-77066159 | MS.gene06375:CDS |
| AACCGGAGCCTGGAAGAGAT+CGG | 0.582929 | 3.1:+77070198 | None:intergenic |
| AATGGATCTAATTCTTCTAA+CGG | 0.582931 | 3.1:-77056157 | MS.gene06375:CDS |
| TGAACACTTACGGTTGCAGT+TGG | 0.583134 | 3.1:+77068926 | None:intergenic |
| TCTCCAGCAGAAAATTTGGT+GGG | 0.584482 | 3.1:+77067180 | None:intergenic |
| ATAGTACTCAGGGGATGGGG+AGG | 0.585440 | 3.1:+77068798 | None:intergenic |
| AAAAGCATCTTTCATTAACA+TGG | 0.587316 | 3.1:+77069360 | None:intergenic |
| GCTAATGTTTGCCCCAATCG+TGG | 0.587698 | 3.1:-77056061 | MS.gene06375:CDS |
| TCCAACCGTGGTCGAAATGG+TGG | 0.588844 | 3.1:-77056205 | MS.gene06375:CDS |
| CTTCTCCGCCACGTTTAGGA+CGG | 0.588923 | 3.1:+77070429 | None:intergenic |
| TTTGTGGCTTGATTGCGATA+GGG | 0.588994 | 3.1:-77069994 | MS.gene06375:CDS |
| TCTCGTGGTAGGGGTCGCAA+TGG | 0.589769 | 3.1:-77056175 | MS.gene06375:CDS |
| CGCCATAACCGTCCTAAACG+TGG | 0.591771 | 3.1:-77070437 | MS.gene06375:CDS |
| CAAACATTAGCAAAGTGAGA+TGG | 0.592978 | 3.1:+77056073 | None:intergenic |
| TGTATAGGAGTGCATTGGTA+CGG | 0.593084 | 3.1:-77065114 | MS.gene06375:intron |
| TGTTCTCATAGATCAGATGA+AGG | 0.594505 | 3.1:-77069110 | MS.gene06375:CDS |
| CTGGAGCGTCGAGTCTGTGA+AGG | 0.596551 | 3.1:+77057990 | None:intergenic |
| CCACAACAAATCCAAGCGTA+GGG | 0.598465 | 3.1:+77069186 | None:intergenic |
| GTTGGCAGTGATGAGCAGAA+TGG | 0.601756 | 3.1:-77061752 | MS.gene06375:CDS |
| TTGTGCGCTCAGAGCTCATG+CGG | 0.601824 | 3.1:+77068745 | None:intergenic |
| CCCTGGATCAATATCAGAAG+CGG | 0.602820 | 3.1:-77060721 | MS.gene06375:CDS |
| AACATACTCTCACGCAACCA+AGG | 0.603024 | 3.1:-77070382 | MS.gene06375:CDS |
| ATTTGTTGTGGAAAGATACT+GGG | 0.603230 | 3.1:-77069174 | MS.gene06375:CDS |
| GGACATTAGAGGAAGAAGCT+AGG | 0.605403 | 3.1:-77070034 | MS.gene06375:CDS |
| GCAATTGTGCAAGAACAACA+AGG | 0.605847 | 3.1:-77067312 | MS.gene06375:CDS |
| GTGATCCTATTTCTGACAGA+AGG | 0.607092 | 3.1:-77056114 | MS.gene06375:CDS |
| TTTCTGCTGGAGAATCAGGA+TGG | 0.607893 | 3.1:-77067170 | MS.gene06375:CDS |
| ATATGAAATCAGTCAGTGAA+GGG | 0.608953 | 3.1:-77062763 | MS.gene06375:CDS |
| AGGTGGTGGACATGATGACC+AGG | 0.609876 | 3.1:-77067220 | MS.gene06375:CDS |
| CTCCAGCAGAAAATTTGGTG+GGG | 0.610625 | 3.1:+77067181 | None:intergenic |
| GTGATGAGCAGAATGGAACT+GGG | 0.610637 | 3.1:-77061745 | MS.gene06375:CDS |
| CACGGCCACCATTTCGACCA+CGG | 0.611148 | 3.1:+77056200 | None:intergenic |
| TGGTTGACATTGTAGCTTGG+TGG | 0.612034 | 3.1:+77059721 | None:intergenic |
| TCCACAACAAATCCAAGCGT+AGG | 0.614617 | 3.1:+77069185 | None:intergenic |
| GTTCTACGCATGTCTAACAA+AGG | 0.614821 | 3.1:-77056621 | MS.gene06375:CDS |
| AATGGTGGCCGTGGATCTCG+TGG | 0.616242 | 3.1:-77056190 | MS.gene06375:CDS |
| GCTTCACTAAGAAGAGGTGG+TGG | 0.616934 | 3.1:+77065281 | None:intergenic |
| TGTGCATATATTCCCCACTC+AGG | 0.617094 | 3.1:+77067285 | None:intergenic |
| TTTGCTGAGCCGTATGGACA+AGG | 0.617926 | 3.1:-77065255 | MS.gene06375:intron |
| TTTGCAATTCGCAAAACACA+CGG | 0.618750 | 3.1:+77056668 | None:intergenic |
| ACAATTGTATAGGAGTGCAT+TGG | 0.623633 | 3.1:-77065119 | MS.gene06375:intron |
| AGGCGTTGCTAATTTCAGCT+GGG | 0.625767 | 3.1:-77069090 | MS.gene06375:CDS |
| TCCGCTTCACTAAGAAGAGG+TGG | 0.626034 | 3.1:+77065278 | None:intergenic |
| TGATGCAGTAGACCTTGGGT+TGG | 0.627683 | 3.1:+77058094 | None:intergenic |
| AAGAAGCTAGGCGGTGTCAG+TGG | 0.631749 | 3.1:-77070022 | MS.gene06375:CDS |
| GACCCCTACCACGAGATCCA+CGG | 0.633791 | 3.1:+77056182 | None:intergenic |
| TGGCTTGATTGCGATAGGGA+AGG | 0.636553 | 3.1:-77069990 | MS.gene06375:CDS |
| GGTTCATAAATTCGTTCCCG+AGG | 0.636955 | 3.1:-77070179 | MS.gene06375:intron |
| ATTCATACAGACCTGGCATG+CGG | 0.637245 | 3.1:+77059294 | None:intergenic |
| AAATGGTTGACATTGTAGCT+TGG | 0.638777 | 3.1:+77059718 | None:intergenic |
| CATGAGGTGACCGAGGACGG+AGG | 0.638882 | 3.1:+77070270 | None:intergenic |
| GATAACTGATAAAACCACCT+TGG | 0.639402 | 3.1:+77068129 | None:intergenic |
| ATGTGGGAGGGTGATTCTAG+AGG | 0.642995 | 3.1:-77066927 | MS.gene06375:intron |
| GTTCGCACTGTCAAGAAACA+GGG | 0.645630 | 3.1:-77058031 | MS.gene06375:CDS |
| CCGCTTCTGATATTGATCCA+GGG | 0.647564 | 3.1:+77060721 | None:intergenic |
| AAGTTATCAGTTTCTGTACG+AGG | 0.650574 | 3.1:+77068107 | None:intergenic |
| GCCGTCGGTGGCGAAATCGG+TGG | 0.652223 | 3.1:-77070407 | MS.gene06375:CDS |
| AAACGTGGCGGAGAAGCCGT+CGG | 0.653200 | 3.1:-77070422 | MS.gene06375:CDS |
| TGTTATGGGATATGATGACA+TGG | 0.653335 | 3.1:-77064220 | MS.gene06375:CDS |
| GCGTTGCTGGTTGATGCAGT+AGG | 0.654976 | 3.1:+77058125 | None:intergenic |
| ACACAGTTGACAGAAATATG+TGG | 0.656276 | 3.1:-77059326 | MS.gene06375:CDS |
| CAACAAGGGCATCCTGAGTG+GGG | 0.661234 | 3.1:-77067297 | MS.gene06375:CDS |
| CGTGGCGGAGAAGCCGTCGG+TGG | 0.661549 | 3.1:-77070419 | MS.gene06375:CDS |
| GAACTGGGGTAGTTGTTCGA+CGG | 0.664560 | 3.1:-77061730 | MS.gene06375:CDS |
| ACAACGGTTGCTGGACCCTG+GGG | 0.669856 | 3.1:-77067265 | MS.gene06375:CDS |
| CTTTGGAGAAACCCTAGAGG+TGG | 0.670933 | 3.1:-77067237 | MS.gene06375:CDS |
| CAATTGTGCAAGAACAACAA+GGG | 0.671925 | 3.1:-77067311 | MS.gene06375:CDS |
| ACAACAGAAACTGTATGAGT+TGG | 0.672041 | 3.1:-77067041 | MS.gene06375:intron |
| AAATCCGCTTCACTAAGAAG+AGG | 0.673563 | 3.1:+77065275 | None:intergenic |
| GTGCCTTCAGGTATAAACTG+TGG | 0.675508 | 3.1:-77062817 | MS.gene06375:intron |
| ACGCCCATCATACCAACCCA+AGG | 0.676042 | 3.1:-77058064 | MS.gene06375:CDS |
| GTCAGAAATAGGATCACCAG+TGG | 0.677928 | 3.1:+77056120 | None:intergenic |
| ACGCCCATCATACCAACCCA+AGG | 0.681750 | 3.1:-77058106 | MS.gene06375:CDS |
| GAGTCACCGTAACCAATGGG+TGG | 0.686245 | 3.1:-77070463 | None:intergenic |
| AGCAATGTCAATTTCCACTG+TGG | 0.691502 | 3.1:+77066967 | None:intergenic |
| AGGTGACAAAAGTAACACCA+AGG | 0.692380 | 3.1:-77068836 | MS.gene06375:CDS |
| GGTGACAAAAGTAACACCAA+GGG | 0.692729 | 3.1:-77068835 | MS.gene06375:CDS |
| TGGGAGGATGAACTCAACAA+TGG | 0.692966 | 3.1:-77056271 | MS.gene06375:CDS |
| CAAGGTCTTCGAGTAAGGGA+CGG | 0.694430 | 3.1:-77070364 | MS.gene06375:CDS |
| GAGGTGAAGAGCATTTGACA+GGG | 0.696749 | 3.1:+77070289 | None:intergenic |
| CCTCTGTTACAGAATATGGG+AGG | 0.698919 | 3.1:-77056287 | MS.gene06375:intron |
| GCTCATGCGGAAGTATCGTG+AGG | 0.700588 | 3.1:+77068758 | None:intergenic |
| CAAGCTCCATGAGGTGACCG+AGG | 0.701223 | 3.1:+77070263 | None:intergenic |
| TCTACGCATGTCTAACAAAG+GGG | 0.704307 | 3.1:-77056619 | MS.gene06375:CDS |
| GTTATGGGATATGATGACAT+GGG | 0.706693 | 3.1:-77064219 | MS.gene06375:CDS |
| GACAGAAGGTGCTATACATG+TGG | 0.711532 | 3.1:-77056100 | MS.gene06375:CDS |
| CATTAGAGGAAGAAGCTAGG+CGG | 0.714956 | 3.1:-77070031 | MS.gene06375:CDS |
| AGTACTCCAGCATCCAACCG+TGG | 0.718670 | 3.1:-77056217 | MS.gene06375:CDS |
| CGTCGAAGTCAAGCTCCATG+AGG | 0.719905 | 3.1:+77070254 | None:intergenic |
| GTGGCAGAAGAACTCTACCA+AGG | 0.723450 | 3.1:-77068146 | MS.gene06375:CDS |
| TGATGAGCAGAATGGAACTG+GGG | 0.724666 | 3.1:-77061744 | MS.gene06375:CDS |
| TCAAGCTCAATAGTACTCAG+GGG | 0.728007 | 3.1:+77068789 | None:intergenic |
| AATATATGAGATGTGCATCG+AGG | 0.728640 | 3.1:-77068951 | MS.gene06375:CDS |
| CATAACCGTCCTAAACGTGG+CGG | 0.734591 | 3.1:-77070434 | MS.gene06375:CDS |
| TTATGGGATATGATGACATG+GGG | 0.743285 | 3.1:-77064218 | MS.gene06375:intron |
| AGTGGGGAATATATGCACAA+CGG | 0.747288 | 3.1:-77067281 | MS.gene06375:CDS |
| GCAGAAGAACTCTACCAAGG+TGG | 0.750268 | 3.1:-77068143 | MS.gene06375:CDS |
| GGACTTTGGAGAAACCCTAG+AGG | 0.766268 | 3.1:-77067240 | MS.gene06375:CDS |
| CTTAGGAGCTGAAACCACAG+TGG | 0.789942 | 3.1:-77066981 | MS.gene06375:CDS |
| AGTTATCGATGTGTGTACTG+CGG | 0.798572 | 3.1:-77069949 | MS.gene06375:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77056054 | 77070470 | 77056054 | ID=MS.gene06375 |
| chr3.1 | mRNA | 77056054 | 77070470 | 77056054 | ID=MS.gene06375.t1;Parent=MS.gene06375 |
| chr3.1 | exon | 77070180 | 77070470 | 77070180 | ID=MS.gene06375.t1.exon1;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77070180 | 77070470 | 77070180 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77069897 | 77070075 | 77069897 | ID=MS.gene06375.t1.exon2;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77069897 | 77070075 | 77069897 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77069596 | 77069668 | 77069596 | ID=MS.gene06375.t1.exon3;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77069596 | 77069668 | 77069596 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77069303 | 77069425 | 77069303 | ID=MS.gene06375.t1.exon4;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77069303 | 77069425 | 77069303 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77069089 | 77069210 | 77069089 | ID=MS.gene06375.t1.exon5;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77069089 | 77069210 | 77069089 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77068937 | 77069009 | 77068937 | ID=MS.gene06375.t1.exon6;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77068937 | 77069009 | 77068937 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77068740 | 77068856 | 77068740 | ID=MS.gene06375.t1.exon7;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77068740 | 77068856 | 77068740 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77068085 | 77068168 | 77068085 | ID=MS.gene06375.t1.exon8;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77068085 | 77068168 | 77068085 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77067155 | 77067334 | 77067155 | ID=MS.gene06375.t1.exon9;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77067155 | 77067334 | 77067155 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77066928 | 77067056 | 77066928 | ID=MS.gene06375.t1.exon10;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77066928 | 77067056 | 77066928 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77066152 | 77066226 | 77066152 | ID=MS.gene06375.t1.exon11;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77066152 | 77066226 | 77066152 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77065256 | 77065345 | 77065256 | ID=MS.gene06375.t1.exon12;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77065256 | 77065345 | 77065256 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77065025 | 77065129 | 77065025 | ID=MS.gene06375.t1.exon13;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77065025 | 77065129 | 77065025 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77064219 | 77064253 | 77064219 | ID=MS.gene06375.t1.exon14;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77064219 | 77064253 | 77064219 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77062700 | 77062829 | 77062700 | ID=MS.gene06375.t1.exon15;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77062700 | 77062829 | 77062700 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77061859 | 77061911 | 77061859 | ID=MS.gene06375.t1.exon16;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77061859 | 77061911 | 77061859 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77061685 | 77061784 | 77061685 | ID=MS.gene06375.t1.exon17;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77061685 | 77061784 | 77061685 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77061254 | 77061292 | 77061254 | ID=MS.gene06375.t1.exon18;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77061254 | 77061292 | 77061254 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77060685 | 77060763 | 77060685 | ID=MS.gene06375.t1.exon19;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77060685 | 77060763 | 77060685 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77059716 | 77059787 | 77059716 | ID=MS.gene06375.t1.exon20;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77059716 | 77059787 | 77059716 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77059306 | 77059377 | 77059306 | ID=MS.gene06375.t1.exon21;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77059306 | 77059377 | 77059306 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77057955 | 77058161 | 77057955 | ID=MS.gene06375.t1.exon22;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77057955 | 77058161 | 77057955 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77056605 | 77056725 | 77056605 | ID=MS.gene06375.t1.exon23;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77056605 | 77056725 | 77056605 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| chr3.1 | exon | 77056054 | 77056297 | 77056054 | ID=MS.gene06375.t1.exon24;Parent=MS.gene06375.t1 |
| chr3.1 | CDS | 77056054 | 77056297 | 77056054 | ID=cds.MS.gene06375.t1;Parent=MS.gene06375.t1 |
| Gene Sequence |
| Protein sequence |