Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037464.t1 | XP_013454830.1 | 100 | 240 | 0 | 0 | 1 | 240 | 1 | 240 | 3.70E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037464.t1 | Q9FFF5 | 77.6 | 237 | 51 | 2 | 4 | 239 | 5 | 240 | 2.6e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037464.t1 | A0A072UGM4 | 100.0 | 240 | 0 | 0 | 1 | 240 | 1 | 240 | 2.6e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037464.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037464 | MS.gene77354 | PPI |
| MS.gene95600 | MS.gene037464 | PPI |
| MS.gene037464 | MS.gene84189 | PPI |
| MS.gene037464 | MS.gene95600 | PPI |
| MS.gene037464 | MS.gene94668 | PPI |
| MS.gene037464 | MS.gene47822 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037464.t1 | MTR_4g015830 | 100.000 | 240 | 0 | 0 | 1 | 240 | 1 | 240 | 0.0 | 498 |
| MS.gene037464.t1 | MTR_7g068590 | 92.149 | 242 | 17 | 2 | 1 | 240 | 1 | 242 | 3.66e-146 | 408 |
| MS.gene037464.t1 | MTR_8g019520 | 60.800 | 250 | 83 | 5 | 6 | 240 | 8 | 257 | 1.06e-91 | 270 |
| MS.gene037464.t1 | MTR_4g134510 | 62.948 | 251 | 81 | 6 | 1 | 239 | 4 | 254 | 2.01e-91 | 270 |
| MS.gene037464.t1 | MTR_8g019520 | 60.241 | 249 | 85 | 5 | 6 | 240 | 8 | 256 | 2.53e-91 | 270 |
| MS.gene037464.t1 | MTR_2g099500 | 60.400 | 250 | 86 | 4 | 3 | 239 | 1 | 250 | 1.44e-88 | 262 |
| MS.gene037464.t1 | MTR_2g040990 | 59.055 | 254 | 89 | 6 | 1 | 240 | 1 | 253 | 9.71e-88 | 260 |
| MS.gene037464.t1 | MTR_1g015185 | 59.216 | 255 | 84 | 4 | 6 | 240 | 9 | 263 | 9.19e-86 | 256 |
| MS.gene037464.t1 | MTR_1g015185 | 67.832 | 143 | 42 | 2 | 6 | 144 | 9 | 151 | 2.88e-54 | 173 |
| MS.gene037464.t1 | MTR_8g066480 | 44.928 | 138 | 43 | 6 | 116 | 240 | 29 | 146 | 1.18e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037464.t1 | AT5G05610 | 77.637 | 237 | 51 | 2 | 4 | 239 | 5 | 240 | 4.29e-120 | 342 |
| MS.gene037464.t1 | AT5G05610 | 77.637 | 237 | 51 | 2 | 4 | 239 | 5 | 240 | 4.29e-120 | 342 |
| MS.gene037464.t1 | AT3G11200 | 76.667 | 240 | 53 | 3 | 3 | 239 | 6 | 245 | 1.16e-112 | 323 |
| MS.gene037464.t1 | AT3G11200 | 76.442 | 208 | 46 | 3 | 35 | 239 | 25 | 232 | 6.71e-96 | 280 |
| MS.gene037464.t1 | AT3G42790 | 63.485 | 241 | 81 | 4 | 6 | 239 | 9 | 249 | 2.01e-95 | 280 |
| MS.gene037464.t1 | AT5G20510 | 59.127 | 252 | 86 | 3 | 6 | 240 | 9 | 260 | 2.02e-91 | 270 |
| MS.gene037464.t1 | AT2G02470 | 60.484 | 248 | 84 | 3 | 7 | 240 | 9 | 256 | 1.12e-89 | 265 |
| MS.gene037464.t1 | AT2G02470 | 61.826 | 241 | 83 | 4 | 7 | 240 | 9 | 247 | 4.67e-89 | 263 |
| MS.gene037464.t1 | AT1G14510 | 60.417 | 240 | 86 | 4 | 7 | 237 | 9 | 248 | 3.61e-85 | 254 |
| MS.gene037464.t1 | AT5G26210 | 58.233 | 249 | 91 | 3 | 4 | 239 | 6 | 254 | 5.04e-81 | 243 |
| MS.gene037464.t1 | AT5G20510 | 58.333 | 216 | 73 | 3 | 42 | 240 | 4 | 219 | 2.84e-71 | 217 |
| MS.gene037464.t1 | AT5G20510 | 64.375 | 160 | 51 | 3 | 6 | 159 | 9 | 168 | 5.79e-58 | 182 |
| MS.gene037464.t1 | AT2G02470 | 66.026 | 156 | 50 | 2 | 7 | 159 | 9 | 164 | 1.05e-57 | 184 |
Find 61 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACAACGCAGATGAATTT+TGG | 0.157167 | 4.4:+84694520 | MS.gene037464:CDS |
| ACAGTGGGCTTGTCCTTTAT+TGG | 0.181225 | 4.4:-84693819 | None:intergenic |
| CCCTCTTGATGCTGCATGAT+GGG | 0.346306 | 4.4:-84694632 | None:intergenic |
| AAGGACAATTTGTGTCTCTA+TGG | 0.371740 | 4.4:+84692949 | MS.gene037464:CDS |
| CTTGATCATCTACCAACTTC+GGG | 0.378335 | 4.4:-84694440 | None:intergenic |
| TTGCTGTGCACAGTGATTCA+TGG | 0.385123 | 4.4:+84693097 | MS.gene037464:CDS |
| CCCCTCTTGATGCTGCATGA+TGG | 0.392694 | 4.4:-84694633 | None:intergenic |
| AACTGACAGGAAGCCAATAA+AGG | 0.424689 | 4.4:+84693806 | MS.gene037464:CDS |
| GGTAGATGATCAAGGTTATG+AGG | 0.436700 | 4.4:+84694449 | MS.gene037464:CDS |
| AAATTAGGGTTATATGGAAA+TGG | 0.439714 | 4.4:+84691647 | None:intergenic |
| GAGCTTCCAGAGCCAGCTCT+TGG | 0.447499 | 4.4:+84693024 | MS.gene037464:CDS |
| TTTATGCTCTCAGCTTTAGC+AGG | 0.457037 | 4.4:-84694597 | None:intergenic |
| CCTTGATCATCTACCAACTT+CGG | 0.461321 | 4.4:-84694441 | None:intergenic |
| TTGATTCCAAGAGCTGGCTC+TGG | 0.466290 | 4.4:-84693030 | None:intergenic |
| TCGTAGGGACTGGCTTTCCC+TGG | 0.475159 | 4.4:+84693074 | MS.gene037464:CDS |
| TCCGCCGCAGCTCCCACAAA+GGG | 0.477598 | 4.4:-84694496 | None:intergenic |
| AGAGCTGGCTCTGGAAGCTC+AGG | 0.482117 | 4.4:-84693021 | None:intergenic |
| GCAAAATTGATTCCAAGAGC+TGG | 0.487397 | 4.4:-84693036 | None:intergenic |
| CATGCAGCATCAAGAGGGGC+AGG | 0.494600 | 4.4:+84694637 | MS.gene037464:CDS |
| TAGATAGTGGAAGCAAATCT+CGG | 0.498320 | 4.4:+84693841 | MS.gene037464:CDS |
| TCAGGTGGAACTTCCTCAGC+AGG | 0.498523 | 4.4:-84693003 | None:intergenic |
| GACAAGCCCACTGTAGATAG+TGG | 0.500654 | 4.4:+84693828 | MS.gene037464:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.500780 | 4.4:+84693110 | MS.gene037464:CDS |
| ATGGACATACAAATGAATCA+TGG | 0.502709 | 4.4:+84692968 | MS.gene037464:CDS |
| ATCGTTCGTGCTTTAACTCA+AGG | 0.504242 | 4.4:+84691729 | MS.gene037464:CDS |
| AGATAGTGGAAGCAAATCTC+GGG | 0.517645 | 4.4:+84693842 | MS.gene037464:CDS |
| AGCATAGCGAAACCCTTTGT+GGG | 0.525663 | 4.4:+84694484 | MS.gene037464:CDS |
| ACCCTTTGTGGGAGCTGCGG+CGG | 0.528826 | 4.4:+84694495 | MS.gene037464:CDS |
| GCTGGCTCTGGAAGCTCAGG+TGG | 0.530887 | 4.4:-84693018 | None:intergenic |
| CAAGGGATGGCATGAATCGT+AGG | 0.533281 | 4.4:+84693058 | MS.gene037464:CDS |
| GTTACAACTTCAAACACAGT+TGG | 0.536280 | 4.4:-84693786 | None:intergenic |
| AGTTAAAAGCAACCCGAAGT+TGG | 0.539736 | 4.4:+84694428 | MS.gene037464:CDS |
| GAGCATAGCGAAACCCTTTG+TGG | 0.541036 | 4.4:+84694483 | MS.gene037464:CDS |
| ATTTGTGAGAGGTGGTATCA+TGG | 0.548216 | 4.4:+84694555 | MS.gene037464:CDS |
| GATTTCAGTTCTCGTAGAGA+TGG | 0.549093 | 4.4:+84691705 | MS.gene037464:CDS |
| CCGAAGTTGGTAGATGATCA+AGG | 0.549251 | 4.4:+84694441 | MS.gene037464:CDS |
| ATCTTTGAAGATCTCTTCAA+CGG | 0.554184 | 4.4:-84691685 | None:intergenic |
| AAGATCTCTTCAACGGTGCG+AGG | 0.564958 | 4.4:-84691678 | None:intergenic |
| TTGCTTCCACTATCTACAGT+GGG | 0.566601 | 4.4:-84693834 | None:intergenic |
| TGGACATACAAATGAATCAT+GGG | 0.567578 | 4.4:+84692969 | MS.gene037464:CDS |
| ATGGCATGAATCGTAGGGAC+TGG | 0.570245 | 4.4:+84693064 | MS.gene037464:CDS |
| CCCATCATGCAGCATCAAGA+GGG | 0.580342 | 4.4:+84694632 | MS.gene037464:CDS |
| AATCACTGTGCACAGCAACC+AGG | 0.586711 | 4.4:-84693092 | None:intergenic |
| TGTTTGAAGTTGTAACTGAC+AGG | 0.592105 | 4.4:+84693793 | MS.gene037464:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 4.4:+84693148 | MS.gene037464:CDS |
| AGATGATCAAGGTTATGAGG+AGG | 0.601386 | 4.4:+84694452 | MS.gene037464:CDS |
| CAAATCTCGGGGCAGCACCA+AGG | 0.607568 | 4.4:+84693854 | MS.gene037464:CDS |
| ATCACTGTGCACAGCAACCA+GGG | 0.609018 | 4.4:-84693091 | None:intergenic |
| GGAGGTTACTCTTCCTGCTG+AGG | 0.618100 | 4.4:+84692990 | MS.gene037464:CDS |
| AAGGGATGGCATGAATCGTA+GGG | 0.619740 | 4.4:+84693059 | MS.gene037464:CDS |
| TTCCGCCGCAGCTCCCACAA+AGG | 0.623737 | 4.4:-84694497 | None:intergenic |
| GCCCATCATGCAGCATCAAG+AGG | 0.626783 | 4.4:+84694631 | MS.gene037464:CDS |
| GAAACCCTTTGTGGGAGCTG+CGG | 0.627662 | 4.4:+84694492 | MS.gene037464:CDS |
| GCTGTGATATTTGTGAGAGG+TGG | 0.631217 | 4.4:+84694547 | MS.gene037464:CDS |
| TTTGCTTCCACTATCTACAG+TGG | 0.644126 | 4.4:-84693835 | None:intergenic |
| TTGGCTGTGATATTTGTGAG+AGG | 0.646263 | 4.4:+84694544 | MS.gene037464:CDS |
| CTAGATAGTACCTTTCATTG+CGG | 0.646490 | 4.4:-84693158 | None:intergenic |
| CCATCATGCAGCATCAAGAG+GGG | 0.665722 | 4.4:+84694633 | MS.gene037464:CDS |
| TATTTGAAGAGATCAAGTGA+TGG | 0.665948 | 4.4:+84694402 | MS.gene037464:intron |
| ACATACAAATGAATCATGGG+AGG | 0.708440 | 4.4:+84692972 | MS.gene037464:CDS |
| GATAGTGGAAGCAAATCTCG+GGG | 0.712141 | 4.4:+84693843 | MS.gene037464:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAAAAAAAATTAC+TGG | - | chr4.4:84691826-84691845 | None:intergenic | 10.0% |
| !! | AAAACAAAAAAAAAATTACT+GGG | - | chr4.4:84691825-84691844 | None:intergenic | 10.0% |
| !! | AATAAAAAATAAAAAACACA+TGG | - | chr4.4:84692108-84692127 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAAAAACACAT+GGG | - | chr4.4:84692107-84692126 | None:intergenic | 10.0% |
| !! | CTATGAATTAAAACTTTAAA+AGG | + | chr4.4:84694322-84694341 | MS.gene037464:intron | 15.0% |
| !! | GTTTGTTTGTTTATTTATTT+AGG | + | chr4.4:84692137-84692156 | MS.gene037464:intron | 15.0% |
| !!! | AGGGTTAAATTTTATTTTTT+TGG | + | chr4.4:84692046-84692065 | MS.gene037464:intron | 15.0% |
| !!! | TCATTATCTTTTTTTTGAAT+CGG | + | chr4.4:84692283-84692302 | MS.gene037464:intron | 15.0% |
| !!! | TGTTTTAAAATAGTATGATT+CGG | + | chr4.4:84692352-84692371 | MS.gene037464:intron | 15.0% |
| !! | AGTTTCTTGAATTGTAAATA+TGG | - | chr4.4:84693472-84693491 | None:intergenic | 20.0% |
| !!! | AATTTTGTATATGTATTCCT+TGG | + | chr4.4:84693387-84693406 | MS.gene037464:intron | 20.0% |
| !!! | ATAGTAATTTAAGTACGTTT+TGG | + | chr4.4:84693194-84693213 | MS.gene037464:intron | 20.0% |
| !!! | TAATGATTTTCTCAATTCAA+AGG | - | chr4.4:84692269-84692288 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTGGAGAATTTG+AGG | + | chr4.4:84692057-84692076 | MS.gene037464:intron | 20.0% |
| ! | AAATTGTTAAGAGCTTGAAT+TGG | + | chr4.4:84692564-84692583 | MS.gene037464:intron | 25.0% |
| ! | AATTGTTAAGAGCTTGAATT+GGG | + | chr4.4:84692565-84692584 | MS.gene037464:intron | 25.0% |
| ! | ATTGTAAATATGGATGAGAA+AGG | - | chr4.4:84693462-84693481 | None:intergenic | 25.0% |
| ! | ATTTGAGGAAAAAAAGTCAA+AGG | + | chr4.4:84692072-84692091 | MS.gene037464:intron | 25.0% |
| ! | CTAATAATTCTACATGTTTG+TGG | + | chr4.4:84692526-84692545 | MS.gene037464:intron | 25.0% |
| ! | TTGAGAATCACAATCAAATT+TGG | + | chr4.4:84692648-84692667 | MS.gene037464:intron | 25.0% |
| ! | TTGTAAATATGGATGAGAAA+GGG | - | chr4.4:84693461-84693480 | None:intergenic | 25.0% |
| ! | TTTACAATTCAAGAAACTTG+AGG | + | chr4.4:84693474-84693493 | MS.gene037464:intron | 25.0% |
| !! | AAAACTTTAAAAGGTTTCGT+AGG | + | chr4.4:84694331-84694350 | MS.gene037464:intron | 25.0% |
| !! | AAACTTTAAAAGGTTTCGTA+GGG | + | chr4.4:84694332-84694351 | MS.gene037464:intron | 25.0% |
| !! | AGGAACTATAATAAAGTGTT+TGG | + | chr4.4:84694028-84694047 | MS.gene037464:intron | 25.0% |
| !! | TGTTTGTATTCTTTTAAGCA+AGG | + | chr4.4:84692589-84692608 | MS.gene037464:intron | 25.0% |
| !!! | CTTTTAAGCAAGGTTTTAAA+TGG | + | chr4.4:84692599-84692618 | MS.gene037464:intron | 25.0% |
| !!! | TGCTTTTTGTTTTCAAGATA+AGG | + | chr4.4:84692930-84692949 | MS.gene037464:intron | 25.0% |
| !!! | TTTATTTGTTGTATAGTCTC+TGG | + | chr4.4:84694055-84694074 | MS.gene037464:intron | 25.0% |
| !!! | TTTTTGCTTTGATTTGCAAT+TGG | + | chr4.4:84693528-84693547 | MS.gene037464:intron | 25.0% |
| AATGACAATTACACTAACCT+TGG | - | chr4.4:84693874-84693893 | None:intergenic | 30.0% | |
| ACTATTTGTATGGTAGAATG+TGG | + | chr4.4:84693611-84693630 | MS.gene037464:intron | 30.0% | |
| ATATGTATTCCTTGGATTGA+TGG | + | chr4.4:84693395-84693414 | MS.gene037464:intron | 30.0% | |
| ATGGACATACAAATGAATCA+TGG | + | chr4.4:84692968-84692987 | MS.gene037464:CDS | 30.0% | |
| CAAAGCAGTTGAGAAAAAAA+TGG | - | chr4.4:84693682-84693701 | None:intergenic | 30.0% | |
| CCAAATCAAAATCCAAAAAC+TGG | - | chr4.4:84692779-84692798 | None:intergenic | 30.0% | |
| GGAAATGCTCTTAGTTATTA+TGG | + | chr4.4:84692845-84692864 | MS.gene037464:intron | 30.0% | |
| TATGTATTCCTTGGATTGAT+GGG | + | chr4.4:84693396-84693415 | MS.gene037464:intron | 30.0% | |
| TATTTGAAGAGATCAAGTGA+TGG | + | chr4.4:84694402-84694421 | MS.gene037464:intron | 30.0% | |
| TCTGGGAAATAAAATTGTCT+TGG | - | chr4.4:84693422-84693441 | None:intergenic | 30.0% | |
| TGGAACCATCAATAAAAAGA+GGG | - | chr4.4:84693721-84693740 | None:intergenic | 30.0% | |
| TGGACATACAAATGAATCAT+GGG | + | chr4.4:84692969-84692988 | MS.gene037464:CDS | 30.0% | |
| TTAGTTTAAAAAGACACAGC+TGG | - | chr4.4:84694131-84694150 | None:intergenic | 30.0% | |
| TTTCTCAACTGCTTTGTAAT+GGG | + | chr4.4:84693686-84693705 | MS.gene037464:intron | 30.0% | |
| ! | AAATTGGCCTGTTATTTACT+CGG | + | chr4.4:84693931-84693950 | MS.gene037464:intron | 30.0% |
| ! | ATATTTAAAACCCTGCTTCT+AGG | + | chr4.4:84692747-84692766 | MS.gene037464:intron | 30.0% |
| ! | ATCTTTGAAGATCTCTTCAA+CGG | - | chr4.4:84691688-84691707 | None:intergenic | 30.0% |
| ! | TCTTGGAATCAATTTTGCAA+GGG | + | chr4.4:84693041-84693060 | MS.gene037464:CDS | 30.0% |
| ! | TTTTCTCAACTGCTTTGTAA+TGG | + | chr4.4:84693685-84693704 | MS.gene037464:intron | 30.0% |
| !! | CTTTGAAATGTTGAGAATTG+AGG | + | chr4.4:84693308-84693327 | MS.gene037464:intron | 30.0% |
| !! | TGTTAATTGTTGAGTTGAGA+GGG | + | chr4.4:84692027-84692046 | MS.gene037464:intron | 30.0% |
| !! | TTGTTAATTGTTGAGTTGAG+AGG | + | chr4.4:84692026-84692045 | MS.gene037464:intron | 30.0% |
| !!! | AGAAGCAGGGTTTTAAATAT+AGG | - | chr4.4:84692747-84692766 | None:intergenic | 30.0% |
| !!! | CCAGTTTTTGGATTTTGATT+TGG | + | chr4.4:84692776-84692795 | MS.gene037464:intron | 30.0% |
| !!! | TGAAAGGTACTATCTAGTTT+TGG | + | chr4.4:84693164-84693183 | MS.gene037464:intron | 30.0% |
| !!! | TTAAGCAAGGTTTTAAATGG+AGG | + | chr4.4:84692602-84692621 | MS.gene037464:intron | 30.0% |
| AAAGCAGTAAGCCCTTAAAA+CGG | - | chr4.4:84693657-84693676 | None:intergenic | 35.0% | |
| AAAGTAGTGTGAGAGTAGAA+CGG | - | chr4.4:84694171-84694190 | None:intergenic | 35.0% | |
| AAGGACAATTTGTGTCTCTA+TGG | + | chr4.4:84692949-84692968 | MS.gene037464:CDS | 35.0% | |
| AAGGAGGGCGAAATTATTAA+CGG | - | chr4.4:84693572-84693591 | None:intergenic | 35.0% | |
| ACATACAAATGAATCATGGG+AGG | + | chr4.4:84692972-84692991 | MS.gene037464:CDS | 35.0% | |
| AGATTTAACAGACACCTAAG+TGG | + | chr4.4:84692804-84692823 | MS.gene037464:intron | 35.0% | |
| AGTTCCTTTGTGTTTGATTC+AGG | - | chr4.4:84694015-84694034 | None:intergenic | 35.0% | |
| CGACACAATGTTTATGAAGT+TGG | - | chr4.4:84692702-84692721 | None:intergenic | 35.0% | |
| CTAGATAGTACCTTTCATTG+CGG | - | chr4.4:84693161-84693180 | None:intergenic | 35.0% | |
| GCAAAAAGTTACAACAGAGT+CGG | - | chr4.4:84693515-84693534 | None:intergenic | 35.0% | |
| GTGGAACCATCAATAAAAAG+AGG | - | chr4.4:84693722-84693741 | None:intergenic | 35.0% | |
| GTTACAACTTCAAACACAGT+TGG | - | chr4.4:84693789-84693808 | None:intergenic | 35.0% | |
| TGTTAGGGCAACTATTTGTA+TGG | + | chr4.4:84693601-84693620 | MS.gene037464:intron | 35.0% | |
| TTCTCCTGAATCAAACACAA+AGG | + | chr4.4:84694008-84694027 | MS.gene037464:intron | 35.0% | |
| TTGTATAGTCTCTGGTTACT+TGG | + | chr4.4:84694063-84694082 | MS.gene037464:intron | 35.0% | |
| ! | AACGCAGATGAATTTTGGAT+TGG | + | chr4.4:84694525-84694544 | MS.gene037464:CDS | 35.0% |
| ! | ACTACAACGCAGATGAATTT+TGG | + | chr4.4:84694520-84694539 | MS.gene037464:CDS | 35.0% |
| ! | ATCAAAGTGCTTCTAAATGC+AGG | - | chr4.4:84694248-84694267 | None:intergenic | 35.0% |
| ! | CTCTTGGAATCAATTTTGCA+AGG | + | chr4.4:84693040-84693059 | MS.gene037464:CDS | 35.0% |
| ! | CTTTCTGTGGCTTTTTATCT+TGG | + | chr4.4:84693123-84693142 | MS.gene037464:CDS | 35.0% |
| ! | TAGGTCCCTCTTTTTATTGA+TGG | + | chr4.4:84693713-84693732 | MS.gene037464:intron | 35.0% |
| ! | TGTTTGAAGTTGTAACTGAC+AGG | + | chr4.4:84693793-84693812 | MS.gene037464:CDS | 35.0% |
| !! | TAGATAGTGGAAGCAAATCT+CGG | + | chr4.4:84693841-84693860 | MS.gene037464:CDS | 35.0% |
| !! | TCTAGGACATATCCAGTTTT+TGG | + | chr4.4:84692764-84692783 | MS.gene037464:intron | 35.0% |
| !!! | AGGTACTATCTAGTTTTGGT+TGG | + | chr4.4:84693168-84693187 | MS.gene037464:intron | 35.0% |
| !!! | CTCTGTTATTGCCGTTTTAA+GGG | + | chr4.4:84693643-84693662 | MS.gene037464:intron | 35.0% |
| !!! | GCAGGGTTTTAAATATAGGT+TGG | - | chr4.4:84692743-84692762 | None:intergenic | 35.0% |
| !!! | GGTACTATCTAGTTTTGGTT+GGG | + | chr4.4:84693169-84693188 | MS.gene037464:intron | 35.0% |
| AACTGACAGGAAGCCAATAA+AGG | + | chr4.4:84693806-84693825 | MS.gene037464:CDS | 40.0% | |
| ACACACACACACACACAAAT+TGG | + | chr4.4:84693915-84693934 | MS.gene037464:intron | 40.0% | |
| ACTCTGTGATCCAGGTAAAT+GGG | + | chr4.4:84691873-84691892 | MS.gene037464:intron | 40.0% | |
| AGATGATCAAGGTTATGAGG+AGG | + | chr4.4:84694452-84694471 | MS.gene037464:CDS | 40.0% | |
| AGGAGGGCGAAATTATTAAC+GGG | - | chr4.4:84693571-84693590 | None:intergenic | 40.0% | |
| AGTTAAAAGCAACCCGAAGT+TGG | + | chr4.4:84694428-84694447 | MS.gene037464:CDS | 40.0% | |
| ATCGTTCGTGCTTTAACTCA+AGG | + | chr4.4:84691729-84691748 | MS.gene037464:CDS | 40.0% | |
| ATTTGTGAGAGGTGGTATCA+TGG | + | chr4.4:84694555-84694574 | MS.gene037464:CDS | 40.0% | |
| CCTTGATCATCTACCAACTT+CGG | - | chr4.4:84694444-84694463 | None:intergenic | 40.0% | |
| CTAACACAGTGTGATAAGGA+GGG | - | chr4.4:84693587-84693606 | None:intergenic | 40.0% | |
| CTCCTTATCACACTGTGTTA+GGG | + | chr4.4:84693586-84693605 | MS.gene037464:intron | 40.0% | |
| CTTGATCATCTACCAACTTC+GGG | - | chr4.4:84694443-84694462 | None:intergenic | 40.0% | |
| GAAACTTGAGGTTGTGTGAA+AGG | + | chr4.4:84693486-84693505 | MS.gene037464:intron | 40.0% | |
| GATTTCAGTTCTCGTAGAGA+TGG | + | chr4.4:84691705-84691724 | MS.gene037464:CDS | 40.0% | |
| GGTAGATGATCAAGGTTATG+AGG | + | chr4.4:84694449-84694468 | MS.gene037464:CDS | 40.0% | |
| TCTTGAACTACCCATTTACC+TGG | - | chr4.4:84691886-84691905 | None:intergenic | 40.0% | |
| TGTGATTCTCAACAACGTCA+AGG | - | chr4.4:84692640-84692659 | None:intergenic | 40.0% | |
| TTGCTTCCACTATCTACAGT+GGG | - | chr4.4:84693837-84693856 | None:intergenic | 40.0% | |
| TTGGCTGTGATATTTGTGAG+AGG | + | chr4.4:84694544-84694563 | MS.gene037464:CDS | 40.0% | |
| TTTGCTTCCACTATCTACAG+TGG | - | chr4.4:84693838-84693857 | None:intergenic | 40.0% | |
| ! | ACACAGCTGGTTTAGATATC+TGG | - | chr4.4:84694118-84694137 | None:intergenic | 40.0% |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4.4:84692400-84692419 | None:intergenic | 40.0% |
| ! | GCAAAATTGATTCCAAGAGC+TGG | - | chr4.4:84693039-84693058 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCAAGGGA+TGG | + | chr4.4:84693045-84693064 | MS.gene037464:CDS | 40.0% |
| ! | TGATTCATGGTTGCTTTCTG+TGG | + | chr4.4:84693110-84693129 | MS.gene037464:CDS | 40.0% |
| ! | TTTATGCTCTCAGCTTTAGC+AGG | - | chr4.4:84694600-84694619 | None:intergenic | 40.0% |
| ! | TTTTATGCACTCTGTGATCC+AGG | + | chr4.4:84691865-84691884 | MS.gene037464:CDS | 40.0% |
| !! | AGATAGTGGAAGCAAATCTC+GGG | + | chr4.4:84693842-84693861 | MS.gene037464:CDS | 40.0% |
| !! | CTGCTTTGTAATGGGCTTAT+AGG | + | chr4.4:84693694-84693713 | MS.gene037464:intron | 40.0% |
| !! | TTGATGGTTCCACTGATTCA+TGG | + | chr4.4:84693729-84693748 | MS.gene037464:intron | 40.0% |
| !!! | GCTCTGTTATTGCCGTTTTA+AGG | + | chr4.4:84693642-84693661 | MS.gene037464:intron | 40.0% |
| AAGGGATGGCATGAATCGTA+GGG | + | chr4.4:84693059-84693078 | MS.gene037464:CDS | 45.0% | |
| ACTGGATATGTCCTAGAAGC+AGG | - | chr4.4:84692761-84692780 | None:intergenic | 45.0% | |
| AGCATAGCGAAACCCTTTGT+GGG | + | chr4.4:84694484-84694503 | MS.gene037464:CDS | 45.0% | |
| CACTCTGTGATCCAGGTAAA+TGG | + | chr4.4:84691872-84691891 | MS.gene037464:intron | 45.0% | |
| CCTAACACAGTGTGATAAGG+AGG | - | chr4.4:84693588-84693607 | None:intergenic | 45.0% | |
| CCTCCTTATCACACTGTGTT+AGG | + | chr4.4:84693585-84693604 | MS.gene037464:intron | 45.0% | |
| CGAGTCTAACTCAACCACTT+AGG | - | chr4.4:84692821-84692840 | None:intergenic | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | + | chr4.4:84693148-84693167 | MS.gene037464:CDS | 45.0% | |
| CTGGATATGTCCTAGAAGCA+GGG | - | chr4.4:84692760-84692779 | None:intergenic | 45.0% | |
| GCTAGCTCCGAGTAAATAAC+AGG | - | chr4.4:84693941-84693960 | None:intergenic | 45.0% | |
| GCTGTGATATTTGTGAGAGG+TGG | + | chr4.4:84694547-84694566 | MS.gene037464:CDS | 45.0% | |
| GGAGGGCGAAATTATTAACG+GGG | - | chr4.4:84693570-84693589 | None:intergenic | 45.0% | |
| TGCCCTAACACAGTGTGATA+AGG | - | chr4.4:84693591-84693610 | None:intergenic | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | + | chr4.4:84693097-84693116 | MS.gene037464:CDS | 45.0% | |
| ! | ACAGTGGGCTTGTCCTTTAT+TGG | - | chr4.4:84693822-84693841 | None:intergenic | 45.0% |
| ! | CAGCTGGTTTAGATATCTGG+CGG | - | chr4.4:84694115-84694134 | None:intergenic | 45.0% |
| ! | CTTCTGATTGAAGGTGTGTC+AGG | + | chr4.4:84692403-84692422 | MS.gene037464:intron | 45.0% |
| !! | CCGAAGTTGGTAGATGATCA+AGG | + | chr4.4:84694441-84694460 | MS.gene037464:CDS | 45.0% |
| !! | GATAGTGGAAGCAAATCTCG+GGG | + | chr4.4:84693843-84693862 | MS.gene037464:CDS | 45.0% |
| !!! | ATTTTAGTTTATAATTTTTT+TGG | + | chr4.4:84692235-84692254 | MS.gene037464:intron | 5.0% |
| AAGATCTCTTCAACGGTGCG+AGG | - | chr4.4:84691681-84691700 | None:intergenic | 50.0% | |
| AATCACTGTGCACAGCAACC+AGG | - | chr4.4:84693095-84693114 | None:intergenic | 50.0% | |
| ATCACTGTGCACAGCAACCA+GGG | - | chr4.4:84693094-84693113 | None:intergenic | 50.0% | |
| ATGGCATGAATCGTAGGGAC+TGG | + | chr4.4:84693064-84693083 | MS.gene037464:CDS | 50.0% | |
| CAAGGGATGGCATGAATCGT+AGG | + | chr4.4:84693058-84693077 | MS.gene037464:CDS | 50.0% | |
| CCATCATGCAGCATCAAGAG+GGG | + | chr4.4:84694633-84694652 | MS.gene037464:CDS | 50.0% | |
| CCCATCATGCAGCATCAAGA+GGG | + | chr4.4:84694632-84694651 | MS.gene037464:CDS | 50.0% | |
| CCCTCTTGATGCTGCATGAT+GGG | - | chr4.4:84694635-84694654 | None:intergenic | 50.0% | |
| CGTTTCCTGCCATGAATCAG+TGG | - | chr4.4:84693741-84693760 | None:intergenic | 50.0% | |
| GACAAGCCCACTGTAGATAG+TGG | + | chr4.4:84693828-84693847 | MS.gene037464:CDS | 50.0% | |
| GAGCATAGCGAAACCCTTTG+TGG | + | chr4.4:84694483-84694502 | MS.gene037464:CDS | 50.0% | |
| TCCCAGAAACCTCAGCACAA+GGG | + | chr4.4:84693435-84693454 | MS.gene037464:intron | 50.0% | |
| TGGTTGAGTTAGACTCGTGC+TGG | + | chr4.4:84692824-84692843 | MS.gene037464:intron | 50.0% | |
| TGTCAGTGTCGTGTCAGTGT+AGG | - | chr4.4:84692443-84692462 | None:intergenic | 50.0% | |
| TGTCTTGGCCCATCAATCCA+AGG | - | chr4.4:84693407-84693426 | None:intergenic | 50.0% | |
| TTCCCAGAAACCTCAGCACA+AGG | + | chr4.4:84693434-84693453 | MS.gene037464:intron | 50.0% | |
| ! | GCACCGACACTTCTGATTGA+AGG | + | chr4.4:84692394-84692413 | MS.gene037464:intron | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+TGG | - | chr4.4:84693033-84693052 | None:intergenic | 50.0% |
| !! | ATAGGTTGGTGACCACGTTC+TGG | - | chr4.4:84692729-84692748 | None:intergenic | 50.0% |
| !! | CAGAAGTGTCGGTGCTACAA+AGG | - | chr4.4:84692389-84692408 | None:intergenic | 50.0% |
| !! | TAGGTTGGTGACCACGTTCT+GGG | - | chr4.4:84692728-84692747 | None:intergenic | 50.0% |
| !! | TGGTTCCACTGATTCATGGC+AGG | + | chr4.4:84693733-84693752 | MS.gene037464:intron | 50.0% |
| CCCCTCTTGATGCTGCATGA+TGG | - | chr4.4:84694636-84694655 | None:intergenic | 55.0% | |
| GAAACCCTTTGTGGGAGCTG+CGG | + | chr4.4:84694492-84694511 | MS.gene037464:CDS | 55.0% | |
| GCCCATCATGCAGCATCAAG+AGG | + | chr4.4:84694631-84694650 | MS.gene037464:CDS | 55.0% | |
| GCCCTTGTGCTGAGGTTTCT+GGG | - | chr4.4:84693439-84693458 | None:intergenic | 55.0% | |
| GGAGGTTACTCTTCCTGCTG+AGG | + | chr4.4:84692990-84693009 | MS.gene037464:CDS | 55.0% | |
| TCAGGTGGAACTTCCTCAGC+AGG | - | chr4.4:84693006-84693025 | None:intergenic | 55.0% | |
| TTGTGTCGCATCCCAGAACG+TGG | + | chr4.4:84692714-84692733 | MS.gene037464:intron | 55.0% | |
| CAAATCTCGGGGCAGCACCA+AGG | + | chr4.4:84693854-84693873 | MS.gene037464:CDS | 60.0% | |
| CATGCAGCATCAAGAGGGGC+AGG | + | chr4.4:84694637-84694656 | MS.gene037464:CDS | 60.0% | |
| GAGAAAGGGCCCTTGTGCTG+AGG | - | chr4.4:84693447-84693466 | None:intergenic | 60.0% | |
| GAGCTTCCAGAGCCAGCTCT+TGG | + | chr4.4:84693024-84693043 | MS.gene037464:CDS | 60.0% | |
| GGCCCTTGTGCTGAGGTTTC+TGG | - | chr4.4:84693440-84693459 | None:intergenic | 60.0% | |
| !! | AGAGCTGGCTCTGGAAGCTC+AGG | - | chr4.4:84693024-84693043 | None:intergenic | 60.0% |
| !! | TCGTAGGGACTGGCTTTCCC+TGG | + | chr4.4:84693074-84693093 | MS.gene037464:CDS | 60.0% |
| ACCCTTTGTGGGAGCTGCGG+CGG | + | chr4.4:84694495-84694514 | MS.gene037464:CDS | 65.0% | |
| TCCGCCGCAGCTCCCACAAA+GGG | - | chr4.4:84694499-84694518 | None:intergenic | 65.0% | |
| TTCCGCCGCAGCTCCCACAA+AGG | - | chr4.4:84694500-84694519 | None:intergenic | 65.0% | |
| !! | GCTGGCTCTGGAAGCTCAGG+TGG | - | chr4.4:84693021-84693040 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 84691660 | 84694665 | 84691660 | ID=MS.gene037464 |
| chr4.4 | mRNA | 84691660 | 84694665 | 84691660 | ID=MS.gene037464.t1;Parent=MS.gene037464 |
| chr4.4 | exon | 84691660 | 84691750 | 84691660 | ID=MS.gene037464.t1.exon1;Parent=MS.gene037464.t1 |
| chr4.4 | CDS | 84691660 | 84691750 | 84691660 | ID=cds.MS.gene037464.t1;Parent=MS.gene037464.t1 |
| chr4.4 | exon | 84691854 | 84691886 | 84691854 | ID=MS.gene037464.t1.exon2;Parent=MS.gene037464.t1 |
| chr4.4 | CDS | 84691854 | 84691886 | 84691854 | ID=cds.MS.gene037464.t1;Parent=MS.gene037464.t1 |
| chr4.4 | exon | 84692947 | 84693169 | 84692947 | ID=MS.gene037464.t1.exon3;Parent=MS.gene037464.t1 |
| chr4.4 | CDS | 84692947 | 84693169 | 84692947 | ID=cds.MS.gene037464.t1;Parent=MS.gene037464.t1 |
| chr4.4 | exon | 84693755 | 84693875 | 84693755 | ID=MS.gene037464.t1.exon4;Parent=MS.gene037464.t1 |
| chr4.4 | CDS | 84693755 | 84693875 | 84693755 | ID=cds.MS.gene037464.t1;Parent=MS.gene037464.t1 |
| chr4.4 | exon | 84694411 | 84694665 | 84694411 | ID=MS.gene037464.t1.exon5;Parent=MS.gene037464.t1 |
| chr4.4 | CDS | 84694411 | 84694665 | 84694411 | ID=cds.MS.gene037464.t1;Parent=MS.gene037464.t1 |
| Gene Sequence |
| Protein sequence |
