Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95600.t1 | XP_013449145.1 | 99.6 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 3.30E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95600.t1 | Q9FFF5 | 74.4 | 238 | 59 | 2 | 4 | 241 | 5 | 240 | 6.7e-104 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95600.t1 | A0A072U0H4 | 99.6 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 2.4e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95600.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95600 | MS.gene77354 | PPI |
| MS.gene95600 | MS.gene84189 | PPI |
| MS.gene95600 | MS.gene94668 | PPI |
| MS.gene95600 | MS.gene037464 | PPI |
| MS.gene037464 | MS.gene95600 | PPI |
| MS.gene95600 | MS.gene47822 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95600.t1 | MTR_7g068590 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 0.0 | 501 |
| MS.gene95600.t1 | MTR_4g015830 | 91.322 | 242 | 19 | 2 | 1 | 242 | 1 | 240 | 7.61e-146 | 407 |
| MS.gene95600.t1 | MTR_4g134510 | 61.355 | 251 | 87 | 4 | 1 | 241 | 4 | 254 | 1.43e-91 | 270 |
| MS.gene95600.t1 | MTR_8g019520 | 58.800 | 250 | 90 | 5 | 6 | 242 | 8 | 257 | 7.71e-88 | 261 |
| MS.gene95600.t1 | MTR_8g019520 | 57.831 | 249 | 93 | 5 | 6 | 242 | 8 | 256 | 1.06e-87 | 260 |
| MS.gene95600.t1 | MTR_2g040990 | 56.538 | 260 | 88 | 6 | 1 | 242 | 1 | 253 | 3.29e-85 | 254 |
| MS.gene95600.t1 | MTR_1g015185 | 59.459 | 259 | 79 | 5 | 6 | 242 | 9 | 263 | 9.68e-85 | 253 |
| MS.gene95600.t1 | MTR_2g099500 | 56.557 | 244 | 96 | 4 | 3 | 236 | 1 | 244 | 5.49e-82 | 246 |
| MS.gene95600.t1 | MTR_1g015185 | 70.992 | 131 | 36 | 1 | 6 | 134 | 9 | 139 | 1.08e-53 | 172 |
| MS.gene95600.t1 | MTR_8g066480 | 42.336 | 137 | 50 | 5 | 116 | 242 | 29 | 146 | 1.12e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95600.t1 | AT5G05610 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.95e-116 | 333 |
| MS.gene95600.t1 | AT5G05610 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.95e-116 | 333 |
| MS.gene95600.t1 | AT3G11200 | 77.083 | 240 | 54 | 1 | 3 | 241 | 6 | 245 | 5.25e-115 | 329 |
| MS.gene95600.t1 | AT3G11200 | 75.481 | 208 | 50 | 1 | 35 | 241 | 25 | 232 | 3.43e-97 | 283 |
| MS.gene95600.t1 | AT3G42790 | 62.397 | 242 | 84 | 5 | 6 | 241 | 9 | 249 | 7.91e-93 | 273 |
| MS.gene95600.t1 | AT2G02470 | 60.484 | 248 | 86 | 4 | 7 | 242 | 9 | 256 | 7.81e-88 | 261 |
| MS.gene95600.t1 | AT5G20510 | 59.127 | 252 | 88 | 4 | 6 | 242 | 9 | 260 | 9.62e-88 | 261 |
| MS.gene95600.t1 | AT2G02470 | 59.336 | 241 | 91 | 3 | 7 | 242 | 9 | 247 | 2.04e-85 | 254 |
| MS.gene95600.t1 | AT1G14510 | 58.333 | 240 | 93 | 4 | 7 | 239 | 9 | 248 | 2.56e-82 | 246 |
| MS.gene95600.t1 | AT5G26210 | 57.430 | 249 | 95 | 4 | 4 | 241 | 6 | 254 | 2.79e-77 | 234 |
| MS.gene95600.t1 | AT5G20510 | 59.722 | 216 | 72 | 4 | 42 | 242 | 4 | 219 | 5.47e-69 | 211 |
| MS.gene95600.t1 | AT5G20510 | 61.875 | 160 | 56 | 3 | 6 | 160 | 9 | 168 | 1.49e-55 | 176 |
| MS.gene95600.t1 | AT2G02470 | 62.179 | 156 | 57 | 1 | 7 | 160 | 9 | 164 | 5.05e-55 | 177 |
Find 72 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGCTTGTTGTCCTTAAT+TGG | 0.215056 | 7.4:+35066376 | None:intergenic |
| ATTACAATGCCGACGAGTTT+TGG | 0.256361 | 7.4:-35066121 | MS.gene95600:CDS |
| CTTTCTGTGGCGTTCTATCT+TGG | 0.287893 | 7.4:-35067756 | MS.gene95600:CDS |
| TTGCTGTGCACAGTGATTCA+TGG | 0.330962 | 7.4:-35067782 | MS.gene95600:CDS |
| AAGGATAATTTGTGTCTCTA+TGG | 0.357930 | 7.4:-35067930 | MS.gene95600:CDS |
| CTTGTATTGCTTTATGCTCT+CGG | 0.362549 | 7.4:+35066034 | None:intergenic |
| GACCGACAGGAAACCAATTA+AGG | 0.374595 | 7.4:-35066389 | MS.gene95600:CDS |
| TTGCTTCCACTGTCCGCTGC+TGG | 0.382118 | 7.4:+35066358 | None:intergenic |
| AGAGCTGGCTCAGGGAGTTC+CGG | 0.393745 | 7.4:+35067858 | None:intergenic |
| CCGTCATCCACAGGAAACTT+TGG | 0.394633 | 7.4:+35066203 | None:intergenic |
| TCTCAATTGGGTTATGGAAA+TGG | 0.397199 | 7.4:-35068663 | None:intergenic |
| CACTAACCTTGGTGCTTCCT+CGG | 0.397306 | 7.4:+35066332 | None:intergenic |
| TTGCTTTATGCTCTCGGCCT+TGG | 0.413678 | 7.4:+35066040 | None:intergenic |
| GAACTCCCTGAGCCAGCTCT+TGG | 0.435136 | 7.4:-35067855 | MS.gene95600:CDS |
| TCCTGTGGATGACGGTTATG+AGG | 0.442634 | 7.4:-35066195 | MS.gene95600:CDS |
| AGCACAGTGAAACACTTTGC+GGG | 0.443628 | 7.4:-35066157 | MS.gene95600:CDS |
| TCCGCCTGATGCTGCATTGA+GGG | 0.446153 | 7.4:+35066009 | None:intergenic |
| TTTATGCTCTCGGCCTTGGC+AGG | 0.451134 | 7.4:+35066044 | None:intergenic |
| CGTCATCCACAGGAAACTTT+GGG | 0.462899 | 7.4:+35066204 | None:intergenic |
| TCCGGTGGAACTTCCTCTGC+TGG | 0.464747 | 7.4:+35067876 | None:intergenic |
| AGTGCCCTCAATGCAGCATC+AGG | 0.465718 | 7.4:-35066013 | MS.gene95600:CDS |
| ACTAACCTTGGTGCTTCCTC+GGG | 0.472237 | 7.4:+35066333 | None:intergenic |
| TTGATTCCAAGAGCTGGCTC+AGG | 0.473652 | 7.4:+35067849 | None:intergenic |
| ATGGTCATAATAATGAAAGC+TGG | 0.475692 | 7.4:-35067911 | MS.gene95600:CDS |
| ACGGTATGAACCGTAGAGAT+TGG | 0.485613 | 7.4:-35067815 | MS.gene95600:CDS |
| GTCGGTCACAATTTCGAAAA+CGG | 0.493814 | 7.4:+35066405 | None:intergenic |
| GTCCTTAATTGGTTTCCTGT+CGG | 0.494680 | 7.4:+35066387 | None:intergenic |
| TTCCGCCTGATGCTGCATTG+AGG | 0.510891 | 7.4:+35066008 | None:intergenic |
| TGACGGTTATGAGGAGGAGG+AGG | 0.514089 | 7.4:-35066186 | MS.gene95600:CDS |
| GCAAAATTGATTCCAAGAGC+TGG | 0.521530 | 7.4:+35067843 | None:intergenic |
| GGCTTCTAGCCCTCGTACCG+TGG | 0.525379 | 7.4:-35068642 | MS.gene95600:CDS |
| TCCTCATAACCGTCATCCAC+AGG | 0.530396 | 7.4:+35066194 | None:intergenic |
| TGGTCATAATAATGAAAGCT+GGG | 0.544113 | 7.4:-35067910 | MS.gene95600:CDS |
| GTTGTTCGTGCCCTCACTCA+AGG | 0.546614 | 7.4:-35068581 | MS.gene95600:intron |
| CAAGAGAAAGCCAATCTCTA+CGG | 0.553772 | 7.4:+35067805 | None:intergenic |
| ATTCGCAGAGATCCAGTGAC+GGG | 0.560137 | 7.4:-35066241 | MS.gene95600:intron |
| GCCAGCAGAGGAAGTTCCAC+CGG | 0.563034 | 7.4:-35067877 | MS.gene95600:CDS |
| GAAACACTTTGCGGGAGCTG+TGG | 0.565640 | 7.4:-35066149 | MS.gene95600:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.570084 | 7.4:-35067769 | MS.gene95600:CDS |
| ACACTTTGCGGGAGCTGTGG+CGG | 0.573976 | 7.4:-35066146 | MS.gene95600:CDS |
| AAGATCTCTTCCACGGTACG+AGG | 0.580081 | 7.4:+35068632 | None:intergenic |
| ATCTTTGAAGATCTCTTCCA+CGG | 0.581501 | 7.4:+35068625 | None:intergenic |
| CCAAAGTTTCCTGTGGATGA+CGG | 0.582757 | 7.4:-35066203 | MS.gene95600:CDS |
| GAGCACAGTGAAACACTTTG+CGG | 0.584136 | 7.4:-35066158 | MS.gene95600:CDS |
| GATAAGAGTACCTTGAGTGA+GGG | 0.589329 | 7.4:+35068571 | None:intergenic |
| GGATGACGGTTATGAGGAGG+AGG | 0.591224 | 7.4:-35066189 | MS.gene95600:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 7.4:-35067731 | MS.gene95600:intron |
| TATGTGAGAGGTGGTACCAT+GGG | 0.596316 | 7.4:-35066085 | MS.gene95600:CDS |
| GTCACAATTTCGAAAACGGT+GGG | 0.600381 | 7.4:+35066409 | None:intergenic |
| TTGAGTGAGGGCACGAACAA+CGG | 0.602596 | 7.4:+35068583 | None:intergenic |
| TGTGAAGATCACTCCTGCCA+AGG | 0.609845 | 7.4:-35066057 | MS.gene95600:CDS |
| AGATAAGAGTACCTTGAGTG+AGG | 0.614546 | 7.4:+35068570 | None:intergenic |
| AACAAGCCAGCAGCGGACAG+TGG | 0.616447 | 7.4:-35066364 | MS.gene95600:CDS |
| GCTGGCTCAGGGAGTTCCGG+TGG | 0.616538 | 7.4:+35067861 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.618512 | 7.4:+35066069 | None:intergenic |
| TGATTCCAAGAGCTGGCTCA+GGG | 0.623716 | 7.4:+35067850 | None:intergenic |
| CATCCACAGGAAACTTTGGG+TGG | 0.633106 | 7.4:+35066207 | None:intergenic |
| GGAAGTAACTCTGCCAGCAG+AGG | 0.636663 | 7.4:-35067889 | MS.gene95600:CDS |
| GCCCTCAATGCAGCATCAGG+CGG | 0.644933 | 7.4:-35066010 | MS.gene95600:CDS |
| AGATCTCTTCCACGGTACGA+GGG | 0.649666 | 7.4:+35068633 | None:intergenic |
| GGTCACAATTTCGAAAACGG+TGG | 0.656142 | 7.4:+35066408 | None:intergenic |
| AAGCCACCCAAAGTTTCCTG+TGG | 0.656897 | 7.4:-35066210 | MS.gene95600:CDS |
| TTGGTTGTGATATATGTGAG+AGG | 0.665767 | 7.4:-35066097 | MS.gene95600:CDS |
| TGTGGATGACGGTTATGAGG+AGG | 0.666323 | 7.4:-35066192 | MS.gene95600:CDS |
| ACAACCAATCCAAAACTCGT+CGG | 0.669542 | 7.4:+35066112 | None:intergenic |
| TATTCGCAGAGATCCAGTGA+CGG | 0.673421 | 7.4:-35066242 | MS.gene95600:intron |
| TAAGGACAACAAGCCAGCAG+CGG | 0.678184 | 7.4:-35066371 | MS.gene95600:CDS |
| ATAGAATGTACCTTTCATTG+CGG | 0.683230 | 7.4:+35067721 | None:intergenic |
| GACAGTGGAAGCAAATCCCG+AGG | 0.687670 | 7.4:-35066349 | MS.gene95600:CDS |
| ATATGTGAGAGGTGGTACCA+TGG | 0.697894 | 7.4:-35066086 | MS.gene95600:CDS |
| CAAATCCCGAGGAAGCACCA+AGG | 0.723813 | 7.4:-35066338 | MS.gene95600:intron |
| GTTGTGATATATGTGAGAGG+TGG | 0.732743 | 7.4:-35066094 | MS.gene95600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCAAAAAAAAAAAAAAAA+CGG | - | chr7.4:35067554-35067573 | MS.gene95600:intron | 10.0% |
| !!! | TTTTAAAGAATTTAATTAGA+GGG | - | chr7.4:35066420-35066439 | MS.gene95600:CDS | 10.0% |
| !!! | TTTTTTTTTTTTGACTAAAA+GGG | + | chr7.4:35067550-35067569 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGACTAAA+AGG | + | chr7.4:35067551-35067570 | None:intergenic | 10.0% |
| !! | AACAAAAACAATTACAAAAA+AGG | + | chr7.4:35066159-35066178 | None:intergenic | 15.0% |
| !! | GTCAAAAAAAAAAAAAAAAC+GGG | - | chr7.4:35067555-35067574 | MS.gene95600:intron | 15.0% |
| !!! | AAATGTGAATTATTTTAGAT+TGG | - | chr7.4:35067214-35067233 | MS.gene95600:intron | 15.0% |
| !!! | AATGTAATGTATTTGTTTTA+AGG | - | chr7.4:35066582-35066601 | MS.gene95600:intron | 15.0% |
| !!! | ACATTAAATTTTAGTTTATC+TGG | - | chr7.4:35066622-35066641 | MS.gene95600:intron | 15.0% |
| !!! | ACATTTAATTTTAGTTTATG+TGG | - | chr7.4:35066445-35066464 | MS.gene95600:intron | 15.0% |
| !!! | ATATATCACTTTTCTTTAAT+CGG | - | chr7.4:35068015-35068034 | MS.gene95600:intron | 15.0% |
| !!! | ATTTTTACTAGTATTATCAA+TGG | - | chr7.4:35067279-35067298 | MS.gene95600:intron | 15.0% |
| !!! | GTTTTAAAGAATTTAATTAG+AGG | - | chr7.4:35066419-35066438 | MS.gene95600:CDS | 15.0% |
| !!! | TTTATACTTTTTGTTTGTAT+TGG | - | chr7.4:35066309-35066328 | MS.gene95600:intron | 15.0% |
| !! | ATACTAGTAAAAATTGAAGT+AGG | + | chr7.4:35067273-35067292 | None:intergenic | 20.0% |
| !! | ATTAGTATTACACAATAGAT+TGG | + | chr7.4:35067662-35067681 | None:intergenic | 20.0% |
| !!! | AATTATTTTAGATTGGTGAT+GGG | - | chr7.4:35067221-35067240 | MS.gene95600:intron | 20.0% |
| !!! | TTATTATGTTTTTCCTCTTA+AGG | - | chr7.4:35068041-35068060 | MS.gene95600:intron | 20.0% |
| !!! | TTTTATGTTGAATTTGACTA+GGG | - | chr7.4:35066383-35066402 | MS.gene95600:CDS | 20.0% |
| !!! | TTTTTATGTTGAATTTGACT+AGG | - | chr7.4:35066382-35066401 | MS.gene95600:CDS | 20.0% |
| ! | AACAAGTATATCACTAGAAA+AGG | + | chr7.4:35068347-35068366 | None:intergenic | 25.0% |
| ! | AACAATGCAACTCATTAAAT+TGG | - | chr7.4:35067719-35067738 | MS.gene95600:intron | 25.0% |
| ! | AACTCATTAAATTGGTATAG+TGG | - | chr7.4:35067727-35067746 | MS.gene95600:intron | 25.0% |
| ! | ACAAGTATATCACTAGAAAA+GGG | + | chr7.4:35068346-35068365 | None:intergenic | 25.0% |
| ! | ATAGTTTCTAACACTAAACA+AGG | + | chr7.4:35067026-35067045 | None:intergenic | 25.0% |
| ! | ATCTATCAAAATTCTCATCT+GGG | - | chr7.4:35066097-35066116 | MS.gene95600:CDS | 25.0% |
| ! | GAAATACCAAAATTATATGG+CGG | + | chr7.4:35067335-35067354 | None:intergenic | 25.0% |
| ! | TAGAAACTATGGCTTATAAT+TGG | - | chr7.4:35067036-35067055 | MS.gene95600:intron | 25.0% |
| ! | TATCTATCAAAATTCTCATC+TGG | - | chr7.4:35066096-35066115 | MS.gene95600:CDS | 25.0% |
| ! | TTGTTTAGTGTTAGAAACTA+TGG | - | chr7.4:35067025-35067044 | MS.gene95600:intron | 25.0% |
| !! | ATTTATGAGTGAATTTTGCA+TGG | - | chr7.4:35066555-35066574 | MS.gene95600:intron | 25.0% |
| !! | GTTTTGTGTTTGTTTAGATA+AGG | - | chr7.4:35066699-35066718 | MS.gene95600:intron | 25.0% |
| !! | TAGTGATATACTTGTTTCTT+TGG | - | chr7.4:35068351-35068370 | MS.gene95600:intron | 25.0% |
| !!! | ATTTGTTAATTTTCCTGACT+TGG | + | chr7.4:35067192-35067211 | None:intergenic | 25.0% |
| !!! | GAATTATTTTAGATTGGTGA+TGG | - | chr7.4:35067220-35067239 | MS.gene95600:intron | 25.0% |
| !!! | GCCATATAATTTTGGTATTT+CGG | - | chr7.4:35067334-35067353 | MS.gene95600:intron | 25.0% |
| !!! | TATCTGGTTTTATGATTGTT+AGG | - | chr7.4:35066638-35066657 | MS.gene95600:intron | 25.0% |
| !!! | TCAGATGTTGATGAATTTTA+CGG | - | chr7.4:35066191-35066210 | MS.gene95600:CDS | 25.0% |
| !!! | TGTTATTTTAAGTCTTGCTT+AGG | + | chr7.4:35067915-35067934 | None:intergenic | 25.0% |
| AACTTTCATGCTGCATAAAA+AGG | + | chr7.4:35067460-35067479 | None:intergenic | 30.0% | |
| ATAGAATGTACCTTTCATTG+CGG | + | chr7.4:35066930-35066949 | None:intergenic | 30.0% | |
| ATGGTCATAATAATGAAAGC+TGG | - | chr7.4:35066737-35066756 | MS.gene95600:intron | 30.0% | |
| ATTACACAATAGATTGGACA+AGG | + | chr7.4:35067656-35067675 | None:intergenic | 30.0% | |
| CAAATACAAGAACAGTGAAA+AGG | + | chr7.4:35067585-35067604 | None:intergenic | 30.0% | |
| CAATGAATACACTCAATCTA+AGG | + | chr7.4:35068110-35068129 | None:intergenic | 30.0% | |
| GCCGAAATACCAAAATTATA+TGG | + | chr7.4:35067338-35067357 | None:intergenic | 30.0% | |
| GTGTTGTGTTTGTTTAGATA+AGG | - | chr7.4:35066518-35066537 | MS.gene95600:intron | 30.0% | |
| TAGATTGAGTGTATTCATTG+TGG | - | chr7.4:35068110-35068129 | MS.gene95600:intron | 30.0% | |
| TGGTCATAATAATGAAAGCT+GGG | - | chr7.4:35066738-35066757 | MS.gene95600:intron | 30.0% | |
| TTACACAATAGATTGGACAA+GGG | + | chr7.4:35067655-35067674 | None:intergenic | 30.0% | |
| ! | AAGGATAATTTGTGTCTCTA+TGG | - | chr7.4:35066718-35066737 | MS.gene95600:intron | 30.0% |
| ! | CATTTTATGGTTGATTACAG+AGG | + | chr7.4:35067412-35067431 | None:intergenic | 30.0% |
| !! | AGGTTTTATGATGTTGATTG+TGG | + | chr7.4:35067895-35067914 | None:intergenic | 30.0% |
| !! | TATCACTTTTCTTTAATCGG+TGG | - | chr7.4:35068018-35068037 | MS.gene95600:intron | 30.0% |
| !! | TCAATGACAATGACTGATTT+TGG | - | chr7.4:35067302-35067321 | MS.gene95600:intron | 30.0% |
| !!! | ACTTGTTTCTTTGGTTCTTT+TGG | - | chr7.4:35068360-35068379 | MS.gene95600:intron | 30.0% |
| !!! | GTTTTAAGGAGTTTGATTAG+AGG | - | chr7.4:35066596-35066615 | MS.gene95600:intron | 30.0% |
| !!! | TCATCTGGGTCTTTTTTTTT+CGG | - | chr7.4:35066111-35066130 | MS.gene95600:CDS | 30.0% |
| AAAAGGGAAAACACTAACCT+TGG | + | chr7.4:35068330-35068349 | None:intergenic | 35.0% | |
| AGGTACATTCTATCTTGCTT+TGG | - | chr7.4:35066937-35066956 | MS.gene95600:intron | 35.0% | |
| ATCCAGGTAAAGTGTATTAG+CGG | - | chr7.4:35066222-35066241 | MS.gene95600:CDS | 35.0% | |
| ATGAAAGTTGTGACTTTGGT+TGG | - | chr7.4:35067471-35067490 | MS.gene95600:intron | 35.0% | |
| ATGGTTTCCCTGATTCTTTA+TGG | - | chr7.4:35068182-35068201 | MS.gene95600:intron | 35.0% | |
| ATTGAAGAGAAAGCCTTAAG+AGG | + | chr7.4:35068057-35068076 | None:intergenic | 35.0% | |
| ATTTCACACTTTAGCAACTG+AGG | + | chr7.4:35067838-35067857 | None:intergenic | 35.0% | |
| CACATTTGAGTGTGAATGTT+TGG | + | chr7.4:35067813-35067832 | None:intergenic | 35.0% | |
| CAGATGGTTCCTTATATTGA+TGG | - | chr7.4:35068163-35068182 | MS.gene95600:intron | 35.0% | |
| CATAGAATGTGACAACTTCT+TGG | + | chr7.4:35067499-35067518 | None:intergenic | 35.0% | |
| CTTGTATTGCTTTATGCTCT+CGG | + | chr7.4:35068617-35068636 | None:intergenic | 35.0% | |
| GTATCCTCAATCTTAATCCA+TGG | - | chr7.4:35067627-35067646 | MS.gene95600:intron | 35.0% | |
| GTCGTAATTGAAGTTCTTTG+TGG | - | chr7.4:35066978-35066997 | MS.gene95600:intron | 35.0% | |
| TACATTCTATCTTGCTTTGG+TGG | - | chr7.4:35066940-35066959 | MS.gene95600:intron | 35.0% | |
| TATGACAACGACTCTGTTAT+AGG | - | chr7.4:35067774-35067793 | MS.gene95600:CDS | 35.0% | |
| TCAGGGAAACCATCAATATA+AGG | + | chr7.4:35068175-35068194 | None:intergenic | 35.0% | |
| TGAAAGTTGTGACTTTGGTT+GGG | - | chr7.4:35067472-35067491 | MS.gene95600:intron | 35.0% | |
| TGGCTTATAATTGGAGTATG+TGG | - | chr7.4:35067045-35067064 | MS.gene95600:intron | 35.0% | |
| TTGGTGGAGATGTTTGTATA+TGG | - | chr7.4:35066956-35066975 | MS.gene95600:intron | 35.0% | |
| TTGGTTGTGATATATGTGAG+AGG | - | chr7.4:35068551-35068570 | MS.gene95600:intron | 35.0% | |
| TTTCCTGCCATAAAGAATCA+GGG | + | chr7.4:35068192-35068211 | None:intergenic | 35.0% | |
| ! | ACCATAAAATGTGATGACGT+AGG | - | chr7.4:35067421-35067440 | MS.gene95600:intron | 35.0% |
| ! | ATCTTTGAAGATCTCTTCCA+CGG | + | chr7.4:35066026-35066045 | None:intergenic | 35.0% |
| ! | GACAATCCGCCATATAATTT+TGG | - | chr7.4:35067326-35067345 | MS.gene95600:intron | 35.0% |
| ! | TAAAATGTGATGACGTAGGA+AGG | - | chr7.4:35067425-35067444 | MS.gene95600:intron | 35.0% |
| ! | TCCTACGTCATCACATTTTA+TGG | + | chr7.4:35067425-35067444 | None:intergenic | 35.0% |
| !! | GTTTTGTTGATATGTGATGC+TGG | - | chr7.4:35067085-35067104 | MS.gene95600:intron | 35.0% |
| ACAACCAATCCAAAACTCGT+CGG | + | chr7.4:35068539-35068558 | None:intergenic | 40.0% | |
| AGGCAGATAAAGTAAGCCAT+CGG | + | chr7.4:35067360-35067379 | None:intergenic | 40.0% | |
| ATCCGCTAATACACTTTACC+TGG | + | chr7.4:35066227-35066246 | None:intergenic | 40.0% | |
| ATGGCTTACTTTATCTGCCT+TGG | - | chr7.4:35067360-35067379 | MS.gene95600:intron | 40.0% | |
| ATTCTCAGAGTCGATGGATA+AGG | + | chr7.4:35067694-35067713 | None:intergenic | 40.0% | |
| CAAGAGAAAGCCAATCTCTA+CGG | + | chr7.4:35066846-35066865 | None:intergenic | 40.0% | |
| CAGCATGAAAGTTGTGACTT+TGG | - | chr7.4:35067467-35067486 | MS.gene95600:intron | 40.0% | |
| GAAAGTTGTGACTTTGGTTG+GGG | - | chr7.4:35067473-35067492 | MS.gene95600:intron | 40.0% | |
| GCTAATGTTGCTCGTAACAT+AGG | + | chr7.4:35067163-35067182 | None:intergenic | 40.0% | |
| GGATACTTGAGACTAAGAGA+AGG | + | chr7.4:35067613-35067632 | None:intergenic | 40.0% | |
| GTCACAATTTCGAAAACGGT+GGG | + | chr7.4:35068242-35068261 | None:intergenic | 40.0% | |
| GTCGGTCACAATTTCGAAAA+CGG | + | chr7.4:35068246-35068265 | None:intergenic | 40.0% | |
| GTTGATATGTGATGCTGGAT+TGG | - | chr7.4:35067090-35067109 | MS.gene95600:intron | 40.0% | |
| GTTGTGATATATGTGAGAGG+TGG | - | chr7.4:35068554-35068573 | MS.gene95600:intron | 40.0% | |
| GTTTCCTGCCATAAAGAATC+AGG | + | chr7.4:35068193-35068212 | None:intergenic | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | + | chr7.4:35068582-35068601 | None:intergenic | 40.0% | |
| TTTCCCTGATTCTTTATGGC+AGG | - | chr7.4:35068186-35068205 | MS.gene95600:intron | 40.0% | |
| ! | ATTACAATGCCGACGAGTTT+TGG | - | chr7.4:35068527-35068546 | MS.gene95600:intron | 40.0% |
| ! | GCAAAATTGATTCCAAGAGC+TGG | + | chr7.4:35066808-35066827 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCTCGAGA+CGG | - | chr7.4:35066814-35066833 | MS.gene95600:intron | 40.0% |
| ! | GGATTGGTACATACATGCAT+TGG | - | chr7.4:35067106-35067125 | MS.gene95600:intron | 40.0% |
| ! | GTCCTTAATTGGTTTCCTGT+CGG | + | chr7.4:35068264-35068283 | None:intergenic | 40.0% |
| ! | TGATTCATGGTTGCTTTCTG+TGG | - | chr7.4:35066879-35066898 | MS.gene95600:intron | 40.0% |
| ! | TTTTCGAAATTGTGACCGAC+AGG | - | chr7.4:35068246-35068265 | MS.gene95600:intron | 40.0% |
| !! | AATTTTGGTATTTCGGCCGA+TGG | - | chr7.4:35067341-35067360 | MS.gene95600:intron | 40.0% |
| !! | AGATAAGAGTACCTTGAGTG+AGG | + | chr7.4:35066081-35066100 | None:intergenic | 40.0% |
| !! | GATAAGAGTACCTTGAGTGA+GGG | + | chr7.4:35066080-35066099 | None:intergenic | 40.0% |
| !! | TTATCCATCGACTCTGAGAA+TGG | - | chr7.4:35067693-35067712 | MS.gene95600:intron | 40.0% |
| !!! | TTTGGTTCTTTTGGCTCGTT+AGG | - | chr7.4:35068369-35068388 | MS.gene95600:intron | 40.0% |
| ACGGTATGAACCGTAGAGAT+TGG | - | chr7.4:35066833-35066852 | MS.gene95600:intron | 45.0% | |
| AGCACAGTGAAACACTTTGC+GGG | - | chr7.4:35068491-35068510 | MS.gene95600:intron | 45.0% | |
| ATATGTGAGAGGTGGTACCA+TGG | - | chr7.4:35068562-35068581 | MS.gene95600:intron | 45.0% | |
| ATCTGCTGCAACTTCACAGA+TGG | - | chr7.4:35068147-35068166 | MS.gene95600:intron | 45.0% | |
| CACTGGATCTCTGCGAATAA+AGG | + | chr7.4:35068405-35068424 | None:intergenic | 45.0% | |
| CCAAAGTTTCCTGTGGATGA+CGG | - | chr7.4:35068445-35068464 | MS.gene95600:CDS | 45.0% | |
| CGTCATCCACAGGAAACTTT+GGG | + | chr7.4:35068447-35068466 | None:intergenic | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | - | chr7.4:35066917-35066936 | MS.gene95600:intron | 45.0% | |
| CTTTCTGTGGCGTTCTATCT+TGG | - | chr7.4:35066892-35066911 | MS.gene95600:intron | 45.0% | |
| GACCGACAGGAAACCAATTA+AGG | - | chr7.4:35068259-35068278 | MS.gene95600:intron | 45.0% | |
| GAGCACAGTGAAACACTTTG+CGG | - | chr7.4:35068490-35068509 | MS.gene95600:intron | 45.0% | |
| GGTCACAATTTCGAAAACGG+TGG | + | chr7.4:35068243-35068262 | None:intergenic | 45.0% | |
| GTGTTGTCAAATTGCTGCCA+AGG | + | chr7.4:35067380-35067399 | None:intergenic | 45.0% | |
| GTTACGAGCAACATTAGCTG+AGG | - | chr7.4:35067165-35067184 | MS.gene95600:intron | 45.0% | |
| TATGTGAGAGGTGGTACCAT+GGG | - | chr7.4:35068563-35068582 | MS.gene95600:intron | 45.0% | |
| TATTCGCAGAGATCCAGTGA+CGG | - | chr7.4:35068406-35068425 | MS.gene95600:intron | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | - | chr7.4:35066866-35066885 | MS.gene95600:intron | 45.0% | |
| ! | GGAGCCATGGATTAAGATTG+AGG | + | chr7.4:35067634-35067653 | None:intergenic | 45.0% |
| ! | TTTTACGGTCTCTGTGATCC+AGG | - | chr7.4:35066206-35066225 | MS.gene95600:CDS | 45.0% |
| !! | GCTGGCTTGTTGTCCTTAAT+TGG | + | chr7.4:35068275-35068294 | None:intergenic | 45.0% |
| !!! | AATGCCGACGAGTTTTGGAT+TGG | - | chr7.4:35068532-35068551 | MS.gene95600:intron | 45.0% |
| AAGATCTCTTCCACGGTACG+AGG | + | chr7.4:35066019-35066038 | None:intergenic | 50.0% | |
| AAGCCACCCAAAGTTTCCTG+TGG | - | chr7.4:35068438-35068457 | MS.gene95600:intron | 50.0% | |
| AGATCTCTTCCACGGTACGA+GGG | + | chr7.4:35066018-35066037 | None:intergenic | 50.0% | |
| ATTCGCAGAGATCCAGTGAC+GGG | - | chr7.4:35068407-35068426 | MS.gene95600:intron | 50.0% | |
| CATCCACAGGAAACTTTGGG+TGG | + | chr7.4:35068444-35068463 | None:intergenic | 50.0% | |
| CATTAGCTGAGGTCCAAGTC+AGG | - | chr7.4:35067176-35067195 | MS.gene95600:intron | 50.0% | |
| CCGTCATCCACAGGAAACTT+TGG | + | chr7.4:35068448-35068467 | None:intergenic | 50.0% | |
| GAGTCGATGGATAAGGTCAG+TGG | + | chr7.4:35067687-35067706 | None:intergenic | 50.0% | |
| GTGTGAATGTTTGGCAGTGC+AGG | + | chr7.4:35067804-35067823 | None:intergenic | 50.0% | |
| GTTGTCATACCAGCAGACAG+CGG | + | chr7.4:35067763-35067782 | None:intergenic | 50.0% | |
| TAAGGACAACAAGCCAGCAG+CGG | - | chr7.4:35068277-35068296 | MS.gene95600:intron | 50.0% | |
| TAGATTGGACAAGGGAGCCA+TGG | + | chr7.4:35067647-35067666 | None:intergenic | 50.0% | |
| TCCTCATAACCGTCATCCAC+AGG | + | chr7.4:35068457-35068476 | None:intergenic | 50.0% | |
| TGCTCCATTCTCAGAGTCGA+TGG | + | chr7.4:35067700-35067719 | None:intergenic | 50.0% | |
| TGTGAAGATCACTCCTGCCA+AGG | - | chr7.4:35068591-35068610 | MS.gene95600:CDS | 50.0% | |
| TTGCTTTATGCTCTCGGCCT+TGG | + | chr7.4:35068611-35068630 | None:intergenic | 50.0% | |
| ! | TCCTGTGGATGACGGTTATG+AGG | - | chr7.4:35068453-35068472 | MS.gene95600:CDS | 50.0% |
| ! | TGATTCCAAGAGCTGGCTCA+GGG | + | chr7.4:35066801-35066820 | None:intergenic | 50.0% |
| ! | TGTGGATGACGGTTATGAGG+AGG | - | chr7.4:35068456-35068475 | MS.gene95600:CDS | 50.0% |
| ! | TTGAGTGAGGGCACGAACAA+CGG | + | chr7.4:35066068-35066087 | None:intergenic | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+AGG | + | chr7.4:35066802-35066821 | None:intergenic | 50.0% |
| !! | ACTAACCTTGGTGCTTCCTC+GGG | + | chr7.4:35068318-35068337 | None:intergenic | 50.0% |
| !! | CACTAACCTTGGTGCTTCCT+CGG | + | chr7.4:35068319-35068338 | None:intergenic | 50.0% |
| AGTGCCCTCAATGCAGCATC+AGG | - | chr7.4:35068635-35068654 | MS.gene95600:CDS | 55.0% | |
| GAAACACTTTGCGGGAGCTG+TGG | - | chr7.4:35068499-35068518 | MS.gene95600:intron | 55.0% | |
| GACAGTGGAAGCAAATCCCG+AGG | - | chr7.4:35068299-35068318 | MS.gene95600:intron | 55.0% | |
| GGAAGTAACTCTGCCAGCAG+AGG | - | chr7.4:35066759-35066778 | MS.gene95600:intron | 55.0% | |
| GTTGTTCGTGCCCTCACTCA+AGG | - | chr7.4:35066067-35066086 | MS.gene95600:CDS | 55.0% | |
| TCCGCCTGATGCTGCATTGA+GGG | + | chr7.4:35068642-35068661 | None:intergenic | 55.0% | |
| TGACGGTTATGAGGAGGAGG+AGG | - | chr7.4:35068462-35068481 | MS.gene95600:intron | 55.0% | |
| TTCCGCCTGATGCTGCATTG+AGG | + | chr7.4:35068643-35068662 | None:intergenic | 55.0% | |
| TTGTAGTCACCGCTGTCTGC+TGG | - | chr7.4:35067751-35067770 | MS.gene95600:CDS | 55.0% | |
| TTTATGCTCTCGGCCTTGGC+AGG | + | chr7.4:35068607-35068626 | None:intergenic | 55.0% | |
| ! | GGATGACGGTTATGAGGAGG+AGG | - | chr7.4:35068459-35068478 | MS.gene95600:intron | 55.0% |
| !! | CAAATCCCGAGGAAGCACCA+AGG | - | chr7.4:35068310-35068329 | MS.gene95600:intron | 55.0% |
| !!! | GCTTTTGACTTGCCCGTCAC+TGG | + | chr7.4:35068422-35068441 | None:intergenic | 55.0% |
| AACAAGCCAGCAGCGGACAG+TGG | - | chr7.4:35068284-35068303 | MS.gene95600:intron | 60.0% | |
| ACACTTTGCGGGAGCTGTGG+CGG | - | chr7.4:35068502-35068521 | MS.gene95600:intron | 60.0% | |
| GAACTCCCTGAGCCAGCTCT+TGG | - | chr7.4:35066793-35066812 | MS.gene95600:intron | 60.0% | |
| GCCAGCAGAGGAAGTTCCAC+CGG | - | chr7.4:35066771-35066790 | MS.gene95600:intron | 60.0% | |
| GCCCTCAATGCAGCATCAGG+CGG | - | chr7.4:35068638-35068657 | MS.gene95600:CDS | 60.0% | |
| TCCGGTGGAACTTCCTCTGC+TGG | + | chr7.4:35066775-35066794 | None:intergenic | 60.0% | |
| TTGCTTCCACTGTCCGCTGC+TGG | + | chr7.4:35068293-35068312 | None:intergenic | 60.0% | |
| ! | AGAGCTGGCTCAGGGAGTTC+CGG | + | chr7.4:35066793-35066812 | None:intergenic | 60.0% |
| GGCTTCTAGCCCTCGTACCG+TGG | - | chr7.4:35066006-35066025 | MS.gene95600:CDS | 65.0% | |
| ! | GCTGGCTCAGGGAGTTCCGG+TGG | + | chr7.4:35066790-35066809 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 35065998 | 35068672 | 35065998 | ID=MS.gene95600 |
| chr7.4 | mRNA | 35065998 | 35068672 | 35065998 | ID=MS.gene95600.t1;Parent=MS.gene95600 |
| chr7.4 | exon | 35068582 | 35068672 | 35068582 | ID=MS.gene95600.t1.exon1;Parent=MS.gene95600.t1 |
| chr7.4 | CDS | 35068582 | 35068672 | 35068582 | ID=cds.MS.gene95600.t1;Parent=MS.gene95600.t1 |
| chr7.4 | exon | 35068443 | 35068475 | 35068443 | ID=MS.gene95600.t1.exon2;Parent=MS.gene95600.t1 |
| chr7.4 | CDS | 35068443 | 35068475 | 35068443 | ID=cds.MS.gene95600.t1;Parent=MS.gene95600.t1 |
| chr7.4 | exon | 35067732 | 35067954 | 35067732 | ID=MS.gene95600.t1.exon3;Parent=MS.gene95600.t1 |
| chr7.4 | CDS | 35067732 | 35067954 | 35067732 | ID=cds.MS.gene95600.t1;Parent=MS.gene95600.t1 |
| chr7.4 | exon | 35066339 | 35066462 | 35066339 | ID=MS.gene95600.t1.exon4;Parent=MS.gene95600.t1 |
| chr7.4 | CDS | 35066339 | 35066462 | 35066339 | ID=cds.MS.gene95600.t1;Parent=MS.gene95600.t1 |
| chr7.4 | exon | 35065998 | 35066255 | 35065998 | ID=MS.gene95600.t1.exon5;Parent=MS.gene95600.t1 |
| chr7.4 | CDS | 35065998 | 35066255 | 35065998 | ID=cds.MS.gene95600.t1;Parent=MS.gene95600.t1 |
| Gene Sequence |
| Protein sequence |
