Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77354.t1 | XP_013449145.1 | 99.6 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 2.00E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77354.t1 | Q9FFF5 | 73.9 | 238 | 60 | 2 | 4 | 241 | 5 | 240 | 6.7e-104 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77354.t1 | A0A072U0H4 | 99.6 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 1.4e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene77354.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95600 | MS.gene77354 | PPI |
| MS.gene77354 | MS.gene84189 | PPI |
| MS.gene77354 | MS.gene94668 | PPI |
| MS.gene037464 | MS.gene77354 | PPI |
| MS.gene77354 | MS.gene47822 | PPI |
| MS.gene47822 | MS.gene77354 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77354.t1 | MTR_7g068590 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 0.0 | 501 |
| MS.gene77354.t1 | MTR_4g015830 | 91.322 | 242 | 19 | 2 | 1 | 242 | 1 | 240 | 1.00e-145 | 407 |
| MS.gene77354.t1 | MTR_4g134510 | 59.761 | 251 | 91 | 4 | 1 | 241 | 4 | 254 | 1.41e-91 | 270 |
| MS.gene77354.t1 | MTR_8g019520 | 58.800 | 250 | 90 | 5 | 6 | 242 | 8 | 257 | 7.30e-88 | 261 |
| MS.gene77354.t1 | MTR_8g019520 | 57.831 | 249 | 93 | 5 | 6 | 242 | 8 | 256 | 1.36e-87 | 260 |
| MS.gene77354.t1 | MTR_1g015185 | 59.608 | 255 | 85 | 3 | 6 | 242 | 9 | 263 | 7.78e-85 | 253 |
| MS.gene77354.t1 | MTR_2g040990 | 56.538 | 260 | 88 | 6 | 1 | 242 | 1 | 253 | 2.65e-84 | 251 |
| MS.gene77354.t1 | MTR_2g099500 | 57.551 | 245 | 92 | 4 | 3 | 236 | 1 | 244 | 2.17e-82 | 246 |
| MS.gene77354.t1 | MTR_1g015185 | 70.992 | 131 | 36 | 1 | 6 | 134 | 9 | 139 | 1.33e-53 | 172 |
| MS.gene77354.t1 | MTR_8g066480 | 42.336 | 137 | 50 | 5 | 116 | 242 | 29 | 146 | 1.15e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77354.t1 | AT5G05610 | 73.529 | 238 | 61 | 1 | 4 | 241 | 5 | 240 | 1.04e-115 | 331 |
| MS.gene77354.t1 | AT5G05610 | 73.529 | 238 | 61 | 1 | 4 | 241 | 5 | 240 | 1.04e-115 | 331 |
| MS.gene77354.t1 | AT3G11200 | 76.667 | 240 | 55 | 1 | 3 | 241 | 6 | 245 | 2.46e-114 | 327 |
| MS.gene77354.t1 | AT3G11200 | 75.000 | 208 | 51 | 1 | 35 | 241 | 25 | 232 | 1.42e-96 | 282 |
| MS.gene77354.t1 | AT3G42790 | 61.826 | 241 | 87 | 4 | 6 | 241 | 9 | 249 | 1.52e-92 | 272 |
| MS.gene77354.t1 | AT5G20510 | 59.127 | 252 | 88 | 4 | 6 | 242 | 9 | 260 | 1.12e-87 | 260 |
| MS.gene77354.t1 | AT2G02470 | 60.081 | 248 | 87 | 4 | 7 | 242 | 9 | 256 | 9.11e-87 | 258 |
| MS.gene77354.t1 | AT2G02470 | 59.414 | 239 | 94 | 2 | 7 | 242 | 9 | 247 | 6.42e-85 | 253 |
| MS.gene77354.t1 | AT1G14510 | 58.333 | 240 | 93 | 4 | 7 | 239 | 9 | 248 | 2.54e-82 | 246 |
| MS.gene77354.t1 | AT5G26210 | 57.430 | 249 | 95 | 4 | 4 | 241 | 6 | 254 | 5.67e-77 | 233 |
| MS.gene77354.t1 | AT5G20510 | 59.722 | 216 | 72 | 4 | 42 | 242 | 4 | 219 | 5.18e-69 | 211 |
| MS.gene77354.t1 | AT5G20510 | 61.875 | 160 | 56 | 3 | 6 | 160 | 9 | 168 | 1.87e-55 | 176 |
| MS.gene77354.t1 | AT2G02470 | 62.179 | 156 | 57 | 1 | 7 | 160 | 9 | 164 | 5.63e-55 | 177 |
Find 70 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGCTTGTTGTCCTTAAT+TGG | 0.215056 | 7.2:+35230538 | None:intergenic |
| ATTACAATGCCGACGAGTTT+TGG | 0.256361 | 7.2:-35230283 | MS.gene77354:CDS |
| TTGCTGTGCACAGTGATTCA+TGG | 0.330962 | 7.2:-35231950 | MS.gene77354:CDS |
| CTTTCTGTGGCGTTCTATCT+AGG | 0.339729 | 7.2:-35231924 | MS.gene77354:CDS |
| AAGGATAATTTGTGTCTCTA+TGG | 0.357930 | 7.2:-35232098 | MS.gene77354:CDS |
| CTTGTATTGCTTTATGCTCT+CGG | 0.362549 | 7.2:+35230196 | None:intergenic |
| GACCGACAGGAAACCAATTA+AGG | 0.374595 | 7.2:-35230551 | MS.gene77354:CDS |
| TTGCTTCCACTGTCCGCTGC+TGG | 0.382118 | 7.2:+35230520 | None:intergenic |
| CCGTCATCCACAGGAAACTT+TGG | 0.383878 | 7.2:+35230365 | None:intergenic |
| AGAGCTGGCTCAGGGAGTTC+CGG | 0.393745 | 7.2:+35232026 | None:intergenic |
| TCTCAATTGGGTTATGGAAA+TGG | 0.397199 | 7.2:-35232849 | None:intergenic |
| CACTAACCTTGGTGCTTCCT+CGG | 0.397306 | 7.2:+35230494 | None:intergenic |
| TTGCTTTATGCTCTCGGCCT+TGG | 0.413678 | 7.2:+35230202 | None:intergenic |
| CGTCATCCACAGGAAACTTT+GGG | 0.432337 | 7.2:+35230366 | None:intergenic |
| GAACTCCCTGAGCCAGCTCT+TGG | 0.435136 | 7.2:-35232023 | MS.gene77354:CDS |
| TCCTGTGGATGACGGTTATG+AGG | 0.442634 | 7.2:-35230357 | MS.gene77354:CDS |
| AGCACAGTGAAACACTTTGC+GGG | 0.443628 | 7.2:-35230319 | MS.gene77354:CDS |
| TCCGCCTGATGCTGCATTGA+GGG | 0.446153 | 7.2:+35230171 | None:intergenic |
| TTTATGCTCTCGGCCTTGGC+AGG | 0.451134 | 7.2:+35230206 | None:intergenic |
| TCCGGTGGAACTTCCTCTGC+TGG | 0.464747 | 7.2:+35232044 | None:intergenic |
| AGTGCCCTCAATGCAGCATC+AGG | 0.465718 | 7.2:-35230175 | MS.gene77354:CDS |
| ACTAACCTTGGTGCTTCCTC+GGG | 0.472237 | 7.2:+35230495 | None:intergenic |
| TTGATTCCAAGAGCTGGCTC+AGG | 0.473652 | 7.2:+35232017 | None:intergenic |
| ATGGTCATAATAATGAAAGC+TGG | 0.475692 | 7.2:-35232079 | MS.gene77354:CDS |
| TTCTACGGTCTCTGTGATCC+AGG | 0.480894 | 7.2:-35232628 | MS.gene77354:intron |
| ACGGTATGAACCGTAGAGAT+TGG | 0.485613 | 7.2:-35231983 | MS.gene77354:CDS |
| GTCGGTCACAATTTCGAAAA+CGG | 0.493814 | 7.2:+35230567 | None:intergenic |
| GTCCTTAATTGGTTTCCTGT+CGG | 0.494680 | 7.2:+35230549 | None:intergenic |
| TCAGATGTTGATGAATTCTA+CGG | 0.501917 | 7.2:-35232643 | MS.gene77354:intron |
| TTCCGCCTGATGCTGCATTG+AGG | 0.510891 | 7.2:+35230170 | None:intergenic |
| TGACGGTTATGAGGAGGAGG+AGG | 0.514089 | 7.2:-35230348 | MS.gene77354:CDS |
| GCAAAATTGATTCCAAGAGC+TGG | 0.521530 | 7.2:+35232011 | None:intergenic |
| TCCTCATAACCGTCATCCAC+AGG | 0.530396 | 7.2:+35230356 | None:intergenic |
| TGGTCATAATAATGAAAGCT+GGG | 0.544113 | 7.2:-35232078 | MS.gene77354:CDS |
| GTTGTTCGTGCTCTCACTCA+AGG | 0.552840 | 7.2:-35232767 | MS.gene77354:intron |
| CAAGAGAAAGCCAATCTCTA+CGG | 0.553772 | 7.2:+35231973 | None:intergenic |
| ATTCGCAGAGATCCAGTGAC+GGG | 0.560137 | 7.2:-35230403 | MS.gene77354:intron |
| GCCAGCAGAGGAAGTTCCAC+CGG | 0.563034 | 7.2:-35232045 | MS.gene77354:CDS |
| AAGATCTCTTCAACGGTACG+AGG | 0.564667 | 7.2:+35232818 | None:intergenic |
| GAAACACTTTGCGGGAGCTG+TGG | 0.565640 | 7.2:-35230311 | MS.gene77354:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.570084 | 7.2:-35231937 | MS.gene77354:CDS |
| ACACTTTGCGGGAGCTGTGG+CGG | 0.573976 | 7.2:-35230308 | MS.gene77354:CDS |
| ATCTTTGAAGATCTCTTCAA+CGG | 0.581501 | 7.2:+35232811 | None:intergenic |
| CCAAAGTTTCCTGTGGATGA+CGG | 0.582757 | 7.2:-35230365 | MS.gene77354:CDS |
| GAGCACAGTGAAACACTTTG+CGG | 0.584136 | 7.2:-35230320 | MS.gene77354:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.587702 | 7.2:-35231899 | MS.gene77354:intron |
| GGATGACGGTTATGAGGAGG+AGG | 0.591224 | 7.2:-35230351 | MS.gene77354:CDS |
| TATGTGAGAGGTGGTACCAT+GGG | 0.596316 | 7.2:-35230247 | MS.gene77354:CDS |
| GTCACAATTTCGAAAACGGT+GGG | 0.600381 | 7.2:+35230571 | None:intergenic |
| TGTGAAGATCACTCCTGCCA+AGG | 0.609845 | 7.2:-35230219 | MS.gene77354:CDS |
| AACAAGCCAGCAGCGGACAG+TGG | 0.616447 | 7.2:-35230526 | MS.gene77354:CDS |
| GCTGGCTCAGGGAGTTCCGG+TGG | 0.616538 | 7.2:+35232029 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.618512 | 7.2:+35230231 | None:intergenic |
| TGATTCCAAGAGCTGGCTCA+GGG | 0.623716 | 7.2:+35232018 | None:intergenic |
| GGAAGTAACTCTGCCAGCAG+AGG | 0.636663 | 7.2:-35232057 | MS.gene77354:CDS |
| AATCAACCCAAAGTTTCCTG+TGG | 0.636882 | 7.2:-35230372 | MS.gene77354:CDS |
| GCCCTCAATGCAGCATCAGG+CGG | 0.644933 | 7.2:-35230172 | MS.gene77354:CDS |
| TTGAGTGAGAGCACGAACAA+CGG | 0.655872 | 7.2:+35232769 | None:intergenic |
| GGTCACAATTTCGAAAACGG+TGG | 0.656142 | 7.2:+35230570 | None:intergenic |
| TTGGTTGTGATATATGTGAG+AGG | 0.665767 | 7.2:-35230259 | MS.gene77354:CDS |
| TGTGGATGACGGTTATGAGG+AGG | 0.666323 | 7.2:-35230354 | MS.gene77354:CDS |
| ACAACCAATCCAAAACTCGT+CGG | 0.669542 | 7.2:+35230274 | None:intergenic |
| AGATCTCTTCAACGGTACGA+GGG | 0.670323 | 7.2:+35232819 | None:intergenic |
| TATTCGCAGAGATCCAGTGA+CGG | 0.673421 | 7.2:-35230404 | MS.gene77354:intron |
| AAGCTAGATACCTTTCATTG+CGG | 0.673560 | 7.2:+35231889 | None:intergenic |
| TAAGGACAACAAGCCAGCAG+CGG | 0.678184 | 7.2:-35230533 | MS.gene77354:CDS |
| GACAGTGGAAGCAAATCCCG+AGG | 0.687670 | 7.2:-35230511 | MS.gene77354:CDS |
| ATATGTGAGAGGTGGTACCA+TGG | 0.697894 | 7.2:-35230248 | MS.gene77354:CDS |
| CAAATCCCGAGGAAGCACCA+AGG | 0.723813 | 7.2:-35230500 | MS.gene77354:intron |
| GTTGTGATATATGTGAGAGG+TGG | 0.732743 | 7.2:-35230256 | MS.gene77354:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATAAAAAAAAAAA+CGG | - | chr7.2:35231750-35231769 | MS.gene77354:intron | 0.0% |
| !!! | ATTTTTTTATTTTGACTAAA+AGG | + | chr7.2:35231739-35231758 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTTTGACTAAAA+GGG | + | chr7.2:35231738-35231757 | None:intergenic | 10.0% |
| !! | AACAAAAACAATTACAAAAA+AGG | + | chr7.2:35230321-35230340 | None:intergenic | 15.0% |
| !!! | AAATGTGAATTATTTTAGAT+TGG | - | chr7.2:35231401-35231420 | MS.gene77354:intron | 15.0% |
| !!! | AATGTAATGTATTTGTTTTA+AGG | - | chr7.2:35230753-35230772 | MS.gene77354:intron | 15.0% |
| !!! | ACATTAAATTTTAGTTTATC+TGG | - | chr7.2:35230793-35230812 | MS.gene77354:intron | 15.0% |
| !!! | ACATTTAATTTTAGTTTATG+TGG | - | chr7.2:35230616-35230635 | MS.gene77354:intron | 15.0% |
| !!! | ATATATCACTTTTCTTTAAT+CGG | - | chr7.2:35232201-35232220 | MS.gene77354:intron | 15.0% |
| !!! | ATTTTTACTAGTATTATCAA+TGG | - | chr7.2:35231466-35231485 | MS.gene77354:intron | 15.0% |
| !!! | TTTATACTTTTTGTTTGTAT+TGG | - | chr7.2:35230477-35230496 | MS.gene77354:intron | 15.0% |
| !!! | TTTTAAAGAATTTGATTAGA+GGG | - | chr7.2:35230591-35230610 | MS.gene77354:CDS | 15.0% |
| !! | ATACTAGTAAAAATTGAAGT+AGG | + | chr7.2:35231460-35231479 | None:intergenic | 20.0% |
| !! | ATTAGTATTACACAATAGAT+TGG | + | chr7.2:35231858-35231877 | None:intergenic | 20.0% |
| !!! | AATTATTTTAGATTGGTGAT+GGG | - | chr7.2:35231408-35231427 | MS.gene77354:intron | 20.0% |
| !!! | GTTTTAAAGAATTTGATTAG+AGG | - | chr7.2:35230590-35230609 | MS.gene77354:CDS | 20.0% |
| !!! | TTATTATGTTTTTCCTCTTA+AGG | - | chr7.2:35232227-35232246 | MS.gene77354:intron | 20.0% |
| ! | AACAAGTATATCACTAGAAA+AGG | + | chr7.2:35232533-35232552 | None:intergenic | 25.0% |
| ! | AACAATGCAACTCATTAAAT+TGG | - | chr7.2:35231915-35231934 | MS.gene77354:CDS | 25.0% |
| ! | AACTCATTAAATTGGTATAG+TGG | - | chr7.2:35231923-35231942 | MS.gene77354:CDS | 25.0% |
| ! | ACAAGTATATCACTAGAAAA+GGG | + | chr7.2:35232532-35232551 | None:intergenic | 25.0% |
| ! | ATAGTTTCTAACACTAAACA+AGG | + | chr7.2:35231213-35231232 | None:intergenic | 25.0% |
| ! | ATCTATCAAAATTCTCATCT+GGG | - | chr7.2:35230259-35230278 | MS.gene77354:CDS | 25.0% |
| ! | CAATTATGACCATATATGTA+AGG | + | chr7.2:35231155-35231174 | None:intergenic | 25.0% |
| ! | GAAATACCAAAATTATATGG+CGG | + | chr7.2:35231522-35231541 | None:intergenic | 25.0% |
| ! | TAGAAACTATGGCTTATAAT+TGG | - | chr7.2:35231223-35231242 | MS.gene77354:intron | 25.0% |
| ! | TATCTATCAAAATTCTCATC+TGG | - | chr7.2:35230258-35230277 | MS.gene77354:CDS | 25.0% |
| ! | TTGTTTAGTGTTAGAAACTA+TGG | - | chr7.2:35231212-35231231 | MS.gene77354:intron | 25.0% |
| !! | ATTTATGAGTGAATTTTGCA+TGG | - | chr7.2:35230726-35230745 | MS.gene77354:intron | 25.0% |
| !! | GTTTTGTGTTTGTTTAGATA+AGG | - | chr7.2:35230879-35230898 | MS.gene77354:intron | 25.0% |
| !! | TAGTGATATACTTGTTTCTT+TGG | - | chr7.2:35232537-35232556 | MS.gene77354:intron | 25.0% |
| !!! | ATTTGTTAATTTTCCTGACT+TGG | + | chr7.2:35231379-35231398 | None:intergenic | 25.0% |
| !!! | GAATTATTTTAGATTGGTGA+TGG | - | chr7.2:35231407-35231426 | MS.gene77354:intron | 25.0% |
| !!! | GCCATATAATTTTGGTATTT+CGG | - | chr7.2:35231521-35231540 | MS.gene77354:intron | 25.0% |
| !!! | TATCTGGTTTTATGATTGTT+AGG | - | chr7.2:35230809-35230828 | MS.gene77354:intron | 25.0% |
| !!! | TGTTATTTTAAGTCTTGCTT+AGG | + | chr7.2:35232111-35232130 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTGAATTTGACTA+GGG | - | chr7.2:35230554-35230573 | MS.gene77354:CDS | 25.0% |
| !!! | TTGTTTTGTTGAATTTGACT+AGG | - | chr7.2:35230553-35230572 | MS.gene77354:CDS | 25.0% |
| AACTTTCATGCTGCATAAAA+AGG | + | chr7.2:35231647-35231666 | None:intergenic | 30.0% | |
| ATGGTCATAATAATGAAAGC+TGG | - | chr7.2:35230917-35230936 | MS.gene77354:intron | 30.0% | |
| ATTACACAATAGATTGGACA+AGG | + | chr7.2:35231852-35231871 | None:intergenic | 30.0% | |
| CAAATACAAGAACAGTGAAA+AGG | + | chr7.2:35231781-35231800 | None:intergenic | 30.0% | |
| CAATGAATACACTCAATCTA+AGG | + | chr7.2:35232296-35232315 | None:intergenic | 30.0% | |
| GCCGAAATACCAAAATTATA+TGG | + | chr7.2:35231525-35231544 | None:intergenic | 30.0% | |
| GTCATAATTGAAGTTCATTG+TGG | - | chr7.2:35231165-35231184 | MS.gene77354:intron | 30.0% | |
| GTGTTGTGTTTGTTTAGATA+AGG | - | chr7.2:35230689-35230708 | MS.gene77354:intron | 30.0% | |
| TAGATTGAGTGTATTCATTG+TGG | - | chr7.2:35232296-35232315 | MS.gene77354:intron | 30.0% | |
| TGGTCATAATAATGAAAGCT+GGG | - | chr7.2:35230918-35230937 | MS.gene77354:intron | 30.0% | |
| TTACACAATAGATTGGACAA+GGG | + | chr7.2:35231851-35231870 | None:intergenic | 30.0% | |
| ! | AAGGATAATTTGTGTCTCTA+TGG | - | chr7.2:35230898-35230917 | MS.gene77354:intron | 30.0% |
| ! | ATCTTTGAAGATCTCTTCAA+CGG | + | chr7.2:35230188-35230207 | None:intergenic | 30.0% |
| ! | CATTTTATGGTTGATTACAG+AGG | + | chr7.2:35231599-35231618 | None:intergenic | 30.0% |
| ! | TCAATGACAATGACAGATTT+TGG | - | chr7.2:35231489-35231508 | MS.gene77354:intron | 30.0% |
| ! | TCAGATGTTGATGAATTCTA+CGG | - | chr7.2:35230353-35230372 | MS.gene77354:CDS | 30.0% |
| ! | TGTTATGTGTGAATTTTGCA+TGG | - | chr7.2:35230524-35230543 | MS.gene77354:CDS | 30.0% |
| !! | AGGTTTTATGATGTTGATTG+TGG | + | chr7.2:35232091-35232110 | None:intergenic | 30.0% |
| !! | TATCACTTTTCTTTAATCGG+TGG | - | chr7.2:35232204-35232223 | MS.gene77354:intron | 30.0% |
| !!! | ACTTGTTTCTTTGGTTCTTT+TGG | - | chr7.2:35232546-35232565 | MS.gene77354:intron | 30.0% |
| !!! | GTTTTAAGGAGTTTGATTAG+AGG | - | chr7.2:35230767-35230786 | MS.gene77354:intron | 30.0% |
| !!! | TCATCTGGGTCTTTTTTTTT+CGG | - | chr7.2:35230273-35230292 | MS.gene77354:CDS | 30.0% |
| !!! | TGGTTTTATGATTGTTAGGT+AGG | - | chr7.2:35230813-35230832 | MS.gene77354:intron | 30.0% |
| AAAAGGGAAAACACTAACCT+TGG | + | chr7.2:35232516-35232535 | None:intergenic | 35.0% | |
| AAGCTAGATACCTTTCATTG+CGG | + | chr7.2:35231110-35231129 | None:intergenic | 35.0% | |
| ATCCAGGTAAAGTGTATTAG+CGG | - | chr7.2:35230384-35230403 | MS.gene77354:CDS | 35.0% | |
| ATGAAAGTTGTGACTTTGGT+TGG | - | chr7.2:35231658-35231677 | MS.gene77354:intron | 35.0% | |
| ATGGTTTCCCTGATTCTTTA+TGG | - | chr7.2:35232368-35232387 | MS.gene77354:intron | 35.0% | |
| ATTGAAGAGAAAGCCTTAAG+AGG | + | chr7.2:35232243-35232262 | None:intergenic | 35.0% | |
| ATTTCACACTTTAGCAACTG+AGG | + | chr7.2:35232034-35232053 | None:intergenic | 35.0% | |
| CACATTTGAGTGTGAATGTT+TGG | + | chr7.2:35232009-35232028 | None:intergenic | 35.0% | |
| CAGATGGTTCCTTATATTGA+TGG | - | chr7.2:35232349-35232368 | MS.gene77354:intron | 35.0% | |
| CATAGAATGTGACAACTTCT+TGG | + | chr7.2:35231686-35231705 | None:intergenic | 35.0% | |
| CTTGTATTGCTTTATGCTCT+CGG | + | chr7.2:35232803-35232822 | None:intergenic | 35.0% | |
| GTATCCTCAATCTTAATCCA+TGG | - | chr7.2:35231823-35231842 | MS.gene77354:intron | 35.0% | |
| TATGACAACGACTCTGTTAT+AGG | - | chr7.2:35231970-35231989 | MS.gene77354:CDS | 35.0% | |
| TCAGGGAAACCATCAATATA+AGG | + | chr7.2:35232361-35232380 | None:intergenic | 35.0% | |
| TGAAAGTTGTGACTTTGGTT+GGG | - | chr7.2:35231659-35231678 | MS.gene77354:intron | 35.0% | |
| TGGCTTATAATTGGAGTATG+TGG | - | chr7.2:35231232-35231251 | MS.gene77354:intron | 35.0% | |
| TTGGTTGTGATATATGTGAG+AGG | - | chr7.2:35232737-35232756 | MS.gene77354:intron | 35.0% | |
| TTTCCTGCCATAAAGAATCA+GGG | + | chr7.2:35232378-35232397 | None:intergenic | 35.0% | |
| ! | ACCATAAAATGTGATGACGT+AGG | - | chr7.2:35231608-35231627 | MS.gene77354:intron | 35.0% |
| ! | GACAATCCGCCATATAATTT+TGG | - | chr7.2:35231513-35231532 | MS.gene77354:intron | 35.0% |
| ! | TAAAATGTGATGACGTAGGA+AGG | - | chr7.2:35231612-35231631 | MS.gene77354:intron | 35.0% |
| ! | TCCTACGTCATCACATTTTA+TGG | + | chr7.2:35231612-35231631 | None:intergenic | 35.0% |
| !! | GTTTTGTTGATATGTGATGC+TGG | - | chr7.2:35231272-35231291 | MS.gene77354:intron | 35.0% |
| AATCAACCCAAAGTTTCCTG+TGG | - | chr7.2:35232624-35232643 | MS.gene77354:intron | 40.0% | |
| ACAACCAATCCAAAACTCGT+CGG | + | chr7.2:35232725-35232744 | None:intergenic | 40.0% | |
| AGGCAGATAAAGTAAGCCAT+CGG | + | chr7.2:35231547-35231566 | None:intergenic | 40.0% | |
| ATCCGCTAATACACTTTACC+TGG | + | chr7.2:35230389-35230408 | None:intergenic | 40.0% | |
| ATGGCTTACTTTATCTGCCT+TGG | - | chr7.2:35231547-35231566 | MS.gene77354:intron | 40.0% | |
| ATTCTCAGAGTCGATGGATA+AGG | + | chr7.2:35231890-35231909 | None:intergenic | 40.0% | |
| CAAGAGAAAGCCAATCTCTA+CGG | + | chr7.2:35231026-35231045 | None:intergenic | 40.0% | |
| CAGCATGAAAGTTGTGACTT+TGG | - | chr7.2:35231654-35231673 | MS.gene77354:intron | 40.0% | |
| GAAAGTTGTGACTTTGGTTG+GGG | - | chr7.2:35231660-35231679 | MS.gene77354:intron | 40.0% | |
| GCTAATGTTGCTCGTAACAT+AGG | + | chr7.2:35231350-35231369 | None:intergenic | 40.0% | |
| GGATACTTGAGACTAAGAGA+AGG | + | chr7.2:35231809-35231828 | None:intergenic | 40.0% | |
| GTCACAATTTCGAAAACGGT+GGG | + | chr7.2:35232428-35232447 | None:intergenic | 40.0% | |
| GTCGGTCACAATTTCGAAAA+CGG | + | chr7.2:35232432-35232451 | None:intergenic | 40.0% | |
| GTTGATATGTGATGCTGGAT+TGG | - | chr7.2:35231277-35231296 | MS.gene77354:intron | 40.0% | |
| GTTGTGATATATGTGAGAGG+TGG | - | chr7.2:35232740-35232759 | MS.gene77354:intron | 40.0% | |
| GTTTCCTGCCATAAAGAATC+AGG | + | chr7.2:35232379-35232398 | None:intergenic | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | + | chr7.2:35232768-35232787 | None:intergenic | 40.0% | |
| TGCAGTGCACCTTACATATA+TGG | - | chr7.2:35231143-35231162 | MS.gene77354:intron | 40.0% | |
| TTTCCCTGATTCTTTATGGC+AGG | - | chr7.2:35232372-35232391 | MS.gene77354:intron | 40.0% | |
| ! | ATTACAATGCCGACGAGTTT+TGG | - | chr7.2:35232713-35232732 | MS.gene77354:intron | 40.0% |
| ! | GCAAAATTGATTCCAAGAGC+TGG | + | chr7.2:35230988-35231007 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCTCGAGA+CGG | - | chr7.2:35230994-35231013 | MS.gene77354:intron | 40.0% |
| ! | GGATTGGTACATACATGCAT+TGG | - | chr7.2:35231293-35231312 | MS.gene77354:intron | 40.0% |
| ! | GTCCTTAATTGGTTTCCTGT+CGG | + | chr7.2:35232450-35232469 | None:intergenic | 40.0% |
| ! | TGATTCATGGTTGCTTTCTG+TGG | - | chr7.2:35231059-35231078 | MS.gene77354:intron | 40.0% |
| ! | TTTTCGAAATTGTGACCGAC+AGG | - | chr7.2:35232432-35232451 | MS.gene77354:intron | 40.0% |
| !! | AATTTTGGTATTTCGGCCGA+TGG | - | chr7.2:35231528-35231547 | MS.gene77354:intron | 40.0% |
| !! | TTATCCATCGACTCTGAGAA+TGG | - | chr7.2:35231889-35231908 | MS.gene77354:intron | 40.0% |
| !!! | TTTGGTTCTTTTGGCTCGTT+AGG | - | chr7.2:35232555-35232574 | MS.gene77354:intron | 40.0% |
| AAGATCTCTTCAACGGTACG+AGG | + | chr7.2:35230181-35230200 | None:intergenic | 45.0% | |
| ACGGTATGAACCGTAGAGAT+TGG | - | chr7.2:35231013-35231032 | MS.gene77354:intron | 45.0% | |
| AGATCTCTTCAACGGTACGA+GGG | + | chr7.2:35230180-35230199 | None:intergenic | 45.0% | |
| AGCACAGTGAAACACTTTGC+GGG | - | chr7.2:35232677-35232696 | MS.gene77354:intron | 45.0% | |
| ATATGTGAGAGGTGGTACCA+TGG | - | chr7.2:35232748-35232767 | MS.gene77354:intron | 45.0% | |
| ATCTGCTGCAACTTCACAGA+TGG | - | chr7.2:35232333-35232352 | MS.gene77354:intron | 45.0% | |
| CACTGGATCTCTGCGAATAA+AGG | + | chr7.2:35232591-35232610 | None:intergenic | 45.0% | |
| CCAAAGTTTCCTGTGGATGA+CGG | - | chr7.2:35232631-35232650 | MS.gene77354:CDS | 45.0% | |
| CGTCATCCACAGGAAACTTT+GGG | + | chr7.2:35232633-35232652 | None:intergenic | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | - | chr7.2:35231097-35231116 | MS.gene77354:intron | 45.0% | |
| CTTTCTGTGGCGTTCTATCT+AGG | - | chr7.2:35231072-35231091 | MS.gene77354:intron | 45.0% | |
| GACCGACAGGAAACCAATTA+AGG | - | chr7.2:35232445-35232464 | MS.gene77354:intron | 45.0% | |
| GAGCACAGTGAAACACTTTG+CGG | - | chr7.2:35232676-35232695 | MS.gene77354:intron | 45.0% | |
| GGTCACAATTTCGAAAACGG+TGG | + | chr7.2:35232429-35232448 | None:intergenic | 45.0% | |
| GTGTTGTCAAATTGCTGCCA+AGG | + | chr7.2:35231567-35231586 | None:intergenic | 45.0% | |
| GTTACGAGCAACATTAGCTG+AGG | - | chr7.2:35231352-35231371 | MS.gene77354:intron | 45.0% | |
| TATGTGAGAGGTGGTACCAT+GGG | - | chr7.2:35232749-35232768 | MS.gene77354:intron | 45.0% | |
| TATTCGCAGAGATCCAGTGA+CGG | - | chr7.2:35232592-35232611 | MS.gene77354:intron | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | - | chr7.2:35231046-35231065 | MS.gene77354:intron | 45.0% | |
| ! | GGAGCCATGGATTAAGATTG+AGG | + | chr7.2:35231830-35231849 | None:intergenic | 45.0% |
| ! | TTGAGTGAGAGCACGAACAA+CGG | + | chr7.2:35230230-35230249 | None:intergenic | 45.0% |
| !! | GCTGGCTTGTTGTCCTTAAT+TGG | + | chr7.2:35232461-35232480 | None:intergenic | 45.0% |
| !!! | AATGCCGACGAGTTTTGGAT+TGG | - | chr7.2:35232718-35232737 | MS.gene77354:intron | 45.0% |
| !! | AAAAAAATAAAAAAAAAAAC+GGG | - | chr7.2:35231751-35231770 | MS.gene77354:intron | 5.0% |
| ATTCGCAGAGATCCAGTGAC+GGG | - | chr7.2:35232593-35232612 | MS.gene77354:intron | 50.0% | |
| CATTAGCTGAGGTCCAAGTC+AGG | - | chr7.2:35231363-35231382 | MS.gene77354:intron | 50.0% | |
| CCGTCATCCACAGGAAACTT+TGG | + | chr7.2:35232634-35232653 | None:intergenic | 50.0% | |
| GAGTCGATGGATAAGGTCAG+TGG | + | chr7.2:35231883-35231902 | None:intergenic | 50.0% | |
| GTGTGAATGTTTGGCAGTGC+AGG | + | chr7.2:35232000-35232019 | None:intergenic | 50.0% | |
| GTTGTCATACCAGCAGACAG+CGG | + | chr7.2:35231959-35231978 | None:intergenic | 50.0% | |
| GTTGTTCGTGCTCTCACTCA+AGG | - | chr7.2:35230229-35230248 | MS.gene77354:CDS | 50.0% | |
| TAAGGACAACAAGCCAGCAG+CGG | - | chr7.2:35232463-35232482 | MS.gene77354:intron | 50.0% | |
| TAGATTGGACAAGGGAGCCA+TGG | + | chr7.2:35231843-35231862 | None:intergenic | 50.0% | |
| TCCTCATAACCGTCATCCAC+AGG | + | chr7.2:35232643-35232662 | None:intergenic | 50.0% | |
| TGCTCCATTCTCAGAGTCGA+TGG | + | chr7.2:35231896-35231915 | None:intergenic | 50.0% | |
| TGTGAAGATCACTCCTGCCA+AGG | - | chr7.2:35232777-35232796 | MS.gene77354:CDS | 50.0% | |
| TTCTACGGTCTCTGTGATCC+AGG | - | chr7.2:35230368-35230387 | MS.gene77354:CDS | 50.0% | |
| TTGCTTTATGCTCTCGGCCT+TGG | + | chr7.2:35232797-35232816 | None:intergenic | 50.0% | |
| ! | TCCTGTGGATGACGGTTATG+AGG | - | chr7.2:35232639-35232658 | MS.gene77354:CDS | 50.0% |
| ! | TGATTCCAAGAGCTGGCTCA+GGG | + | chr7.2:35230981-35231000 | None:intergenic | 50.0% |
| ! | TGTGGATGACGGTTATGAGG+AGG | - | chr7.2:35232642-35232661 | MS.gene77354:CDS | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+AGG | + | chr7.2:35230982-35231001 | None:intergenic | 50.0% |
| !! | ACTAACCTTGGTGCTTCCTC+GGG | + | chr7.2:35232504-35232523 | None:intergenic | 50.0% |
| !! | CACTAACCTTGGTGCTTCCT+CGG | + | chr7.2:35232505-35232524 | None:intergenic | 50.0% |
| !!! | GATTTTGACTTGCCCGTCAC+TGG | + | chr7.2:35232608-35232627 | None:intergenic | 50.0% |
| AGTGCCCTCAATGCAGCATC+AGG | - | chr7.2:35232821-35232840 | MS.gene77354:CDS | 55.0% | |
| GAAACACTTTGCGGGAGCTG+TGG | - | chr7.2:35232685-35232704 | MS.gene77354:intron | 55.0% | |
| GACAGTGGAAGCAAATCCCG+AGG | - | chr7.2:35232485-35232504 | MS.gene77354:intron | 55.0% | |
| GGAAGTAACTCTGCCAGCAG+AGG | - | chr7.2:35230939-35230958 | MS.gene77354:intron | 55.0% | |
| TCCGCCTGATGCTGCATTGA+GGG | + | chr7.2:35232828-35232847 | None:intergenic | 55.0% | |
| TGACGGTTATGAGGAGGAGG+AGG | - | chr7.2:35232648-35232667 | MS.gene77354:intron | 55.0% | |
| TTCCGCCTGATGCTGCATTG+AGG | + | chr7.2:35232829-35232848 | None:intergenic | 55.0% | |
| TTGTAGTCACCGCTGTCTGC+TGG | - | chr7.2:35231947-35231966 | MS.gene77354:CDS | 55.0% | |
| TTTATGCTCTCGGCCTTGGC+AGG | + | chr7.2:35232793-35232812 | None:intergenic | 55.0% | |
| ! | GGATGACGGTTATGAGGAGG+AGG | - | chr7.2:35232645-35232664 | MS.gene77354:intron | 55.0% |
| !! | CAAATCCCGAGGAAGCACCA+AGG | - | chr7.2:35232496-35232515 | MS.gene77354:intron | 55.0% |
| AACAAGCCAGCAGCGGACAG+TGG | - | chr7.2:35232470-35232489 | MS.gene77354:intron | 60.0% | |
| ACACTTTGCGGGAGCTGTGG+CGG | - | chr7.2:35232688-35232707 | MS.gene77354:intron | 60.0% | |
| GAACTCCCTGAGCCAGCTCT+TGG | - | chr7.2:35230973-35230992 | MS.gene77354:intron | 60.0% | |
| GCCAGCAGAGGAAGTTCCAC+CGG | - | chr7.2:35230951-35230970 | MS.gene77354:intron | 60.0% | |
| GCCCTCAATGCAGCATCAGG+CGG | - | chr7.2:35232824-35232843 | MS.gene77354:CDS | 60.0% | |
| TCCGGTGGAACTTCCTCTGC+TGG | + | chr7.2:35230955-35230974 | None:intergenic | 60.0% | |
| TTGCTTCCACTGTCCGCTGC+TGG | + | chr7.2:35232479-35232498 | None:intergenic | 60.0% | |
| ! | AGAGCTGGCTCAGGGAGTTC+CGG | + | chr7.2:35230973-35230992 | None:intergenic | 60.0% |
| ! | GCTGGCTCAGGGAGTTCCGG+TGG | + | chr7.2:35230970-35230989 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 35230160 | 35232858 | 35230160 | ID=MS.gene77354 |
| chr7.2 | mRNA | 35230160 | 35232858 | 35230160 | ID=MS.gene77354.t1;Parent=MS.gene77354 |
| chr7.2 | exon | 35232768 | 35232858 | 35232768 | ID=MS.gene77354.t1.exon1;Parent=MS.gene77354.t1 |
| chr7.2 | CDS | 35232768 | 35232858 | 35232768 | ID=cds.MS.gene77354.t1;Parent=MS.gene77354.t1 |
| chr7.2 | exon | 35232629 | 35232661 | 35232629 | ID=MS.gene77354.t1.exon2;Parent=MS.gene77354.t1 |
| chr7.2 | CDS | 35232629 | 35232661 | 35232629 | ID=cds.MS.gene77354.t1;Parent=MS.gene77354.t1 |
| chr7.2 | exon | 35231900 | 35232122 | 35231900 | ID=MS.gene77354.t1.exon3;Parent=MS.gene77354.t1 |
| chr7.2 | CDS | 35231900 | 35232122 | 35231900 | ID=cds.MS.gene77354.t1;Parent=MS.gene77354.t1 |
| chr7.2 | exon | 35230501 | 35230624 | 35230501 | ID=MS.gene77354.t1.exon4;Parent=MS.gene77354.t1 |
| chr7.2 | CDS | 35230501 | 35230624 | 35230501 | ID=cds.MS.gene77354.t1;Parent=MS.gene77354.t1 |
| chr7.2 | exon | 35230160 | 35230417 | 35230160 | ID=MS.gene77354.t1.exon5;Parent=MS.gene77354.t1 |
| chr7.2 | CDS | 35230160 | 35230417 | 35230160 | ID=cds.MS.gene77354.t1;Parent=MS.gene77354.t1 |
| Gene Sequence |
| Protein sequence |
