Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47822.t1 | XP_013454830.1 | 100 | 240 | 0 | 0 | 1 | 240 | 1 | 240 | 3.70E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47822.t1 | Q9FFF5 | 77.6 | 237 | 51 | 2 | 4 | 239 | 5 | 240 | 2.6e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47822.t1 | A0A072UGM4 | 100.0 | 240 | 0 | 0 | 1 | 240 | 1 | 240 | 2.6e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47822.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene47822 | 0.882116 | 1.36E-70 | -1.69E-46 |
| MS.gene049178 | MS.gene47822 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene04918 | MS.gene47822 | 0.829067 | 6.33E-55 | -1.69E-46 |
| MS.gene049208 | MS.gene47822 | 0.817301 | 3.54E-52 | -1.69E-46 |
| MS.gene04920 | MS.gene47822 | 0.810895 | 9.18E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene47822 | 0.854034 | 1.61E-61 | -1.69E-46 |
| MS.gene049283 | MS.gene47822 | 0.831563 | 1.56E-55 | -1.69E-46 |
| MS.gene049343 | MS.gene47822 | 0.818718 | 1.69E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene47822 | 0.859181 | 4.94E-63 | -1.69E-46 |
| MS.gene049368 | MS.gene47822 | 0.838995 | 2.06E-57 | -1.69E-46 |
| MS.gene049499 | MS.gene47822 | 0.835427 | 1.69E-56 | -1.69E-46 |
| MS.gene049652 | MS.gene47822 | 0.817015 | 4.10E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene47822 | 0.826769 | 2.26E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene47822 | 0.816692 | 4.85E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene47822 | 0.817282 | 3.58E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene47822 | 0.840455 | 8.61E-58 | -1.69E-46 |
| MS.gene050439 | MS.gene47822 | 0.832611 | 8.57E-56 | -1.69E-46 |
| MS.gene050556 | MS.gene47822 | 0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene050559 | MS.gene47822 | 0.807502 | 4.90E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene47822 | 0.812925 | 3.32E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene47822 | 0.805432 | 1.34E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene47822 | 0.819074 | 1.41E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene47822 | 0.80823 | 3.43E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene47822 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene47822 | 0.832449 | 9.39E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene47822 | 0.810124 | 1.35E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene47822 | 0.839846 | 1.24E-57 | -1.69E-46 |
| MS.gene051332 | MS.gene47822 | 0.824212 | 9.12E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene47822 | 0.829116 | 6.16E-55 | -1.69E-46 |
| MS.gene051490 | MS.gene47822 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene051676 | MS.gene47822 | 0.805141 | 1.54E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene47822 | 0.808478 | 3.04E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene47822 | 0.872136 | 4.01E-67 | -1.69E-46 |
| MS.gene051848 | MS.gene47822 | -0.812435 | 4.25E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene47822 | 0.804334 | 2.27E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene47822 | 0.872455 | 3.14E-67 | -1.69E-46 |
| MS.gene052012 | MS.gene47822 | 0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene052052 | MS.gene47822 | 0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene47822 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene47822 | 0.845958 | 2.93E-59 | -1.69E-46 |
| MS.gene052335 | MS.gene47822 | 0.807472 | 4.97E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene47822 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene47822 | 0.868242 | 7.55E-66 | -1.69E-46 |
| MS.gene052493 | MS.gene47822 | 0.814286 | 1.66E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene47822 | 0.820882 | 5.42E-53 | -1.69E-46 |
| MS.gene052518 | MS.gene47822 | 0.810302 | 1.23E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene47822 | 0.835808 | 1.35E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene47822 | 0.800275 | 1.56E-48 | -1.69E-46 |
| MS.gene052584 | MS.gene47822 | 0.807045 | 6.12E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene47822 | 0.845927 | 2.99E-59 | -1.69E-46 |
| MS.gene052773 | MS.gene47822 | 0.846163 | 2.58E-59 | -1.69E-46 |
| MS.gene052775 | MS.gene47822 | 0.827038 | 1.95E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene47822 | 0.80284 | 4.64E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene47822 | 0.80648 | 8.06E-50 | -1.69E-46 |
| MS.gene052889 | MS.gene47822 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene052932 | MS.gene47822 | 0.828453 | 8.92E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene47822 | 0.823728 | 1.18E-53 | -1.69E-46 |
| MS.gene053143 | MS.gene47822 | 0.816593 | 5.11E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene47822 | 0.804414 | 2.19E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene47822 | 0.863309 | 2.73E-64 | -1.69E-46 |
| MS.gene053298 | MS.gene47822 | 0.815529 | 8.82E-52 | -1.69E-46 |
| MS.gene054222 | MS.gene47822 | 0.812953 | 3.27E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene47822 | 0.807993 | 3.85E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene47822 | 0.828885 | 7.01E-55 | -1.69E-46 |
| MS.gene054576 | MS.gene47822 | 0.839223 | 1.80E-57 | -1.69E-46 |
| MS.gene05458 | MS.gene47822 | 0.839685 | 1.37E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene47822 | 0.829453 | 5.10E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene47822 | 0.820228 | 7.66E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene47822 | 0.816951 | 4.24E-52 | -1.69E-46 |
| MS.gene054943 | MS.gene47822 | 0.805209 | 1.49E-49 | -1.69E-46 |
| MS.gene054957 | MS.gene47822 | 0.800707 | 1.27E-48 | -1.69E-46 |
| MS.gene054991 | MS.gene47822 | 0.806265 | 8.95E-50 | -1.69E-46 |
| MS.gene055231 | MS.gene47822 | 0.800229 | 1.59E-48 | -1.69E-46 |
| MS.gene055310 | MS.gene47822 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene47822 | 0.829973 | 3.81E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene47822 | 0.867089 | 1.77E-65 | -1.69E-46 |
| MS.gene055314 | MS.gene47822 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene055386 | MS.gene47822 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene47822 | 0.803878 | 2.83E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene47822 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene47822 | 0.898987 | 3.10E-77 | -1.69E-46 |
| MS.gene055603 | MS.gene47822 | 0.829198 | 5.89E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene47822 | 0.810403 | 1.17E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene47822 | 0.856349 | 3.42E-62 | -1.69E-46 |
| MS.gene056045 | MS.gene47822 | 0.812005 | 5.27E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene47822 | 0.820398 | 7.01E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene47822 | 0.819954 | 8.85E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene47822 | 0.835928 | 1.26E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene47822 | 0.83721 | 5.95E-57 | -1.69E-46 |
| MS.gene056390 | MS.gene47822 | 0.836035 | 1.18E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene47822 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene056509 | MS.gene47822 | 0.801241 | 9.88E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene47822 | 0.824075 | 9.83E-54 | -1.69E-46 |
| MS.gene056638 | MS.gene47822 | 0.803397 | 3.56E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene47822 | 0.903403 | 3.59E-79 | -1.69E-46 |
| MS.gene056776 | MS.gene47822 | 0.808462 | 3.06E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene47822 | 0.812789 | 3.55E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene47822 | 0.831017 | 2.12E-55 | -1.69E-46 |
| MS.gene05690 | MS.gene47822 | 0.82768 | 1.37E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene47822 | 0.856573 | 2.94E-62 | -1.69E-46 |
| MS.gene057034 | MS.gene47822 | 0.873801 | 1.11E-67 | -1.69E-46 |
| MS.gene057102 | MS.gene47822 | 0.861389 | 1.06E-63 | -1.69E-46 |
| MS.gene057155 | MS.gene47822 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene47822 | 0.822368 | 2.46E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene47822 | 0.831355 | 1.75E-55 | -1.69E-46 |
| MS.gene057611 | MS.gene47822 | 0.809155 | 2.18E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene47822 | 0.807419 | 5.10E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene47822 | 0.838861 | 2.24E-57 | -1.69E-46 |
| MS.gene058008 | MS.gene47822 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene47822 | 0.80715 | 5.82E-50 | -1.69E-46 |
| MS.gene058095 | MS.gene47822 | 0.809851 | 1.54E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene47822 | 0.819587 | 1.07E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene47822 | 0.832506 | 9.09E-56 | -1.69E-46 |
| MS.gene058355 | MS.gene47822 | 0.805301 | 1.43E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene47822 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene058668 | MS.gene47822 | 0.835716 | 1.43E-56 | -1.69E-46 |
| MS.gene058758 | MS.gene47822 | 0.801144 | 1.03E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene47822 | 0.800099 | 1.69E-48 | -1.69E-46 |
| MS.gene05897 | MS.gene47822 | 0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene059144 | MS.gene47822 | 0.809022 | 2.32E-50 | -1.69E-46 |
| MS.gene059146 | MS.gene47822 | 0.835701 | 1.44E-56 | -1.69E-46 |
| MS.gene059170 | MS.gene47822 | 0.847967 | 8.27E-60 | -1.69E-46 |
| MS.gene059227 | MS.gene47822 | 0.814172 | 1.76E-51 | -1.69E-46 |
| MS.gene059283 | MS.gene47822 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene059439 | MS.gene47822 | 0.810016 | 1.42E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene47822 | 0.805289 | 1.43E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene47822 | 0.838126 | 3.46E-57 | -1.69E-46 |
| MS.gene059625 | MS.gene47822 | 0.815931 | 7.18E-52 | -1.69E-46 |
| MS.gene059774 | MS.gene47822 | 0.824556 | 7.57E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene47822 | -0.855622 | 5.58E-62 | -1.69E-46 |
| MS.gene059900 | MS.gene47822 | -0.811297 | 7.51E-51 | -1.69E-46 |
| MS.gene059901 | MS.gene47822 | -0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene47822 | 0.857113 | 2.04E-62 | -1.69E-46 |
| MS.gene060365 | MS.gene47822 | 0.816189 | 6.29E-52 | -1.69E-46 |
| MS.gene060697 | MS.gene47822 | 0.822236 | 2.64E-53 | -1.69E-46 |
| MS.gene060777 | MS.gene47822 | 0.840753 | 7.19E-58 | -1.69E-46 |
| MS.gene060840 | MS.gene47822 | 0.828624 | 8.10E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene47822 | 0.832044 | 1.18E-55 | -1.69E-46 |
| MS.gene060933 | MS.gene47822 | 0.831365 | 1.74E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene47822 | 0.849733 | 2.68E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene47822 | 0.86032 | 2.24E-63 | -1.69E-46 |
| MS.gene061100 | MS.gene47822 | 0.840506 | 8.35E-58 | -1.69E-46 |
| MS.gene061160 | MS.gene47822 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene061188 | MS.gene47822 | 0.848896 | 4.58E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47822 | MS.gene84189 | PPI |
| MS.gene47822 | MS.gene94668 | PPI |
| MS.gene77354 | MS.gene47822 | PPI |
| MS.gene95600 | MS.gene47822 | PPI |
| MS.gene47822 | MS.gene77354 | PPI |
| MS.gene037464 | MS.gene47822 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47822.t1 | MTR_4g015830 | 100.000 | 240 | 0 | 0 | 1 | 240 | 1 | 240 | 0.0 | 498 |
| MS.gene47822.t1 | MTR_7g068590 | 92.149 | 242 | 17 | 2 | 1 | 240 | 1 | 242 | 3.66e-146 | 408 |
| MS.gene47822.t1 | MTR_8g019520 | 60.800 | 250 | 83 | 5 | 6 | 240 | 8 | 257 | 1.06e-91 | 270 |
| MS.gene47822.t1 | MTR_4g134510 | 62.948 | 251 | 81 | 6 | 1 | 239 | 4 | 254 | 2.01e-91 | 270 |
| MS.gene47822.t1 | MTR_8g019520 | 60.241 | 249 | 85 | 5 | 6 | 240 | 8 | 256 | 2.53e-91 | 270 |
| MS.gene47822.t1 | MTR_2g099500 | 60.400 | 250 | 86 | 4 | 3 | 239 | 1 | 250 | 1.44e-88 | 262 |
| MS.gene47822.t1 | MTR_2g040990 | 59.055 | 254 | 89 | 6 | 1 | 240 | 1 | 253 | 9.71e-88 | 260 |
| MS.gene47822.t1 | MTR_1g015185 | 59.216 | 255 | 84 | 4 | 6 | 240 | 9 | 263 | 9.19e-86 | 256 |
| MS.gene47822.t1 | MTR_1g015185 | 67.832 | 143 | 42 | 2 | 6 | 144 | 9 | 151 | 2.88e-54 | 173 |
| MS.gene47822.t1 | MTR_8g066480 | 44.928 | 138 | 43 | 6 | 116 | 240 | 29 | 146 | 1.18e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47822.t1 | AT5G05610 | 77.637 | 237 | 51 | 2 | 4 | 239 | 5 | 240 | 4.29e-120 | 342 |
| MS.gene47822.t1 | AT5G05610 | 77.637 | 237 | 51 | 2 | 4 | 239 | 5 | 240 | 4.29e-120 | 342 |
| MS.gene47822.t1 | AT3G11200 | 76.667 | 240 | 53 | 3 | 3 | 239 | 6 | 245 | 1.16e-112 | 323 |
| MS.gene47822.t1 | AT3G11200 | 76.442 | 208 | 46 | 3 | 35 | 239 | 25 | 232 | 6.71e-96 | 280 |
| MS.gene47822.t1 | AT3G42790 | 63.485 | 241 | 81 | 4 | 6 | 239 | 9 | 249 | 2.01e-95 | 280 |
| MS.gene47822.t1 | AT5G20510 | 59.127 | 252 | 86 | 3 | 6 | 240 | 9 | 260 | 2.02e-91 | 270 |
| MS.gene47822.t1 | AT2G02470 | 60.484 | 248 | 84 | 3 | 7 | 240 | 9 | 256 | 1.12e-89 | 265 |
| MS.gene47822.t1 | AT2G02470 | 61.826 | 241 | 83 | 4 | 7 | 240 | 9 | 247 | 4.67e-89 | 263 |
| MS.gene47822.t1 | AT1G14510 | 60.417 | 240 | 86 | 4 | 7 | 237 | 9 | 248 | 3.61e-85 | 254 |
| MS.gene47822.t1 | AT5G26210 | 58.233 | 249 | 91 | 3 | 4 | 239 | 6 | 254 | 5.04e-81 | 243 |
| MS.gene47822.t1 | AT5G20510 | 58.333 | 216 | 73 | 3 | 42 | 240 | 4 | 219 | 2.84e-71 | 217 |
| MS.gene47822.t1 | AT5G20510 | 64.375 | 160 | 51 | 3 | 6 | 159 | 9 | 168 | 5.79e-58 | 182 |
| MS.gene47822.t1 | AT2G02470 | 66.026 | 156 | 50 | 2 | 7 | 159 | 9 | 164 | 1.05e-57 | 184 |
Find 61 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACAACGCAGATGAATTT+TGG | 0.157167 | 4.3:+82756843 | MS.gene47822:CDS |
| ACAGTGGGCTTGTCCTTTAT+TGG | 0.181225 | 4.3:-82756142 | None:intergenic |
| CCCTCTTGATGCTGCATGAT+GGG | 0.346306 | 4.3:-82756955 | None:intergenic |
| AAGGACAATTTGTGTCTCTA+TGG | 0.371740 | 4.3:+82755272 | MS.gene47822:CDS |
| CTTGATCATCTACCAACTTC+GGG | 0.378335 | 4.3:-82756763 | None:intergenic |
| TTGCTGTGCACAGTGATTCA+TGG | 0.385123 | 4.3:+82755420 | MS.gene47822:CDS |
| CCCCTCTTGATGCTGCATGA+TGG | 0.392694 | 4.3:-82756956 | None:intergenic |
| AACTGACAGGAAGCCAATAA+AGG | 0.424689 | 4.3:+82756129 | MS.gene47822:CDS |
| GGTAGATGATCAAGGTTATG+AGG | 0.436700 | 4.3:+82756772 | MS.gene47822:CDS |
| AAATTAGGGTTATATGGAAA+TGG | 0.439714 | 4.3:+82753971 | None:intergenic |
| GAGCTTCCAGAGCCAGCTCT+TGG | 0.447499 | 4.3:+82755347 | MS.gene47822:CDS |
| TTTATGCTCTCAGCTTTAGC+AGG | 0.457037 | 4.3:-82756920 | None:intergenic |
| CCTTGATCATCTACCAACTT+CGG | 0.461321 | 4.3:-82756764 | None:intergenic |
| TTGATTCCAAGAGCTGGCTC+TGG | 0.466290 | 4.3:-82755353 | None:intergenic |
| TCGTAGGGACTGGCTTTCCC+TGG | 0.475159 | 4.3:+82755397 | MS.gene47822:CDS |
| TCCGCCGCAGCTCCCACAAA+GGG | 0.477598 | 4.3:-82756819 | None:intergenic |
| AGAGCTGGCTCTGGAAGCTC+AGG | 0.482117 | 4.3:-82755344 | None:intergenic |
| GCAAAATTGATTCCAAGAGC+TGG | 0.487397 | 4.3:-82755359 | None:intergenic |
| CATGCAGCATCAAGAGGGGC+AGG | 0.494600 | 4.3:+82756960 | MS.gene47822:CDS |
| TAGATAGTGGAAGCAAATCT+CGG | 0.498320 | 4.3:+82756164 | MS.gene47822:CDS |
| TCAGGTGGAACTTCCTCAGC+AGG | 0.498523 | 4.3:-82755326 | None:intergenic |
| GACAAGCCCACTGTAGATAG+TGG | 0.500654 | 4.3:+82756151 | MS.gene47822:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.500780 | 4.3:+82755433 | MS.gene47822:CDS |
| ATGGACATACAAATGAATCA+TGG | 0.502709 | 4.3:+82755291 | MS.gene47822:CDS |
| ATCGTTCGTGCTTTAACTCA+AGG | 0.504242 | 4.3:+82754053 | MS.gene47822:CDS |
| AGATAGTGGAAGCAAATCTC+GGG | 0.517645 | 4.3:+82756165 | MS.gene47822:CDS |
| AGCATAGCGAAACCCTTTGT+GGG | 0.525663 | 4.3:+82756807 | MS.gene47822:CDS |
| ACCCTTTGTGGGAGCTGCGG+CGG | 0.528826 | 4.3:+82756818 | MS.gene47822:CDS |
| GCTGGCTCTGGAAGCTCAGG+TGG | 0.530887 | 4.3:-82755341 | None:intergenic |
| CAAGGGATGGCATGAATCGT+AGG | 0.533281 | 4.3:+82755381 | MS.gene47822:CDS |
| GTTACAACTTCAAACACAGT+TGG | 0.536280 | 4.3:-82756109 | None:intergenic |
| AGTTAAAAGCAACCCGAAGT+TGG | 0.539736 | 4.3:+82756751 | MS.gene47822:CDS |
| GAGCATAGCGAAACCCTTTG+TGG | 0.541036 | 4.3:+82756806 | MS.gene47822:CDS |
| ATTTGTGAGAGGTGGTATCA+TGG | 0.548216 | 4.3:+82756878 | MS.gene47822:CDS |
| GATTTCAGTTCTCGTAGAGA+TGG | 0.549093 | 4.3:+82754029 | MS.gene47822:CDS |
| CCGAAGTTGGTAGATGATCA+AGG | 0.549251 | 4.3:+82756764 | MS.gene47822:CDS |
| ATCTTTGAAGATCTCTTCAA+CGG | 0.554184 | 4.3:-82754009 | None:intergenic |
| AAGATCTCTTCAACGGTGCG+AGG | 0.564958 | 4.3:-82754002 | None:intergenic |
| TTGCTTCCACTATCTACAGT+GGG | 0.566601 | 4.3:-82756157 | None:intergenic |
| TGGACATACAAATGAATCAT+GGG | 0.567578 | 4.3:+82755292 | MS.gene47822:CDS |
| ATGGCATGAATCGTAGGGAC+TGG | 0.570245 | 4.3:+82755387 | MS.gene47822:CDS |
| CCCATCATGCAGCATCAAGA+GGG | 0.580342 | 4.3:+82756955 | MS.gene47822:CDS |
| AATCACTGTGCACAGCAACC+AGG | 0.586711 | 4.3:-82755415 | None:intergenic |
| TGTTTGAAGTTGTAACTGAC+AGG | 0.592105 | 4.3:+82756116 | MS.gene47822:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 4.3:+82755471 | MS.gene47822:CDS |
| AGATGATCAAGGTTATGAGG+AGG | 0.601386 | 4.3:+82756775 | MS.gene47822:CDS |
| CAAATCTCGGGGCAGCACCA+AGG | 0.607568 | 4.3:+82756177 | MS.gene47822:CDS |
| ATCACTGTGCACAGCAACCA+GGG | 0.609018 | 4.3:-82755414 | None:intergenic |
| GGAGGTTACTCTTCCTGCTG+AGG | 0.618100 | 4.3:+82755313 | MS.gene47822:CDS |
| AAGGGATGGCATGAATCGTA+GGG | 0.619740 | 4.3:+82755382 | MS.gene47822:CDS |
| TTCCGCCGCAGCTCCCACAA+AGG | 0.623737 | 4.3:-82756820 | None:intergenic |
| GCCCATCATGCAGCATCAAG+AGG | 0.626783 | 4.3:+82756954 | MS.gene47822:CDS |
| GAAACCCTTTGTGGGAGCTG+CGG | 0.627662 | 4.3:+82756815 | MS.gene47822:CDS |
| GCTGTGATATTTGTGAGAGG+TGG | 0.631217 | 4.3:+82756870 | MS.gene47822:CDS |
| TTTGCTTCCACTATCTACAG+TGG | 0.644126 | 4.3:-82756158 | None:intergenic |
| TTGGCTGTGATATTTGTGAG+AGG | 0.646263 | 4.3:+82756867 | MS.gene47822:CDS |
| CTAGATAGTACCTTTCATTG+CGG | 0.646490 | 4.3:-82755481 | None:intergenic |
| CCATCATGCAGCATCAAGAG+GGG | 0.665722 | 4.3:+82756956 | MS.gene47822:CDS |
| TATTTGAAGAGATCAAGTGA+TGG | 0.665948 | 4.3:+82756725 | MS.gene47822:intron |
| ACATACAAATGAATCATGGG+AGG | 0.708440 | 4.3:+82755295 | MS.gene47822:CDS |
| GATAGTGGAAGCAAATCTCG+GGG | 0.712141 | 4.3:+82756166 | MS.gene47822:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAAAAAAAATTAC+TGG | - | chr4.3:82754149-82754168 | None:intergenic | 10.0% |
| !! | AAAACAAAAAAAAAATTACT+GGG | - | chr4.3:82754148-82754167 | None:intergenic | 10.0% |
| !! | AATAAAAAATAAAAAACACA+TGG | - | chr4.3:82754431-82754450 | None:intergenic | 10.0% |
| !! | ATAAAAAATAAAAAACACAT+GGG | - | chr4.3:82754430-82754449 | None:intergenic | 10.0% |
| !! | CTATGAATTAAAACTTTAAA+AGG | + | chr4.3:82756645-82756664 | MS.gene47822:intron | 15.0% |
| !! | GTTTGTTTGTTTATTTATTT+AGG | + | chr4.3:82754460-82754479 | MS.gene47822:intron | 15.0% |
| !!! | AGGGTTAAATTTTATTTTTT+TGG | + | chr4.3:82754369-82754388 | MS.gene47822:intron | 15.0% |
| !!! | TCATTATCTTTTTTTTGAAT+CGG | + | chr4.3:82754606-82754625 | MS.gene47822:intron | 15.0% |
| !!! | TGTTTTAAAATAGTATGATT+CGG | + | chr4.3:82754675-82754694 | MS.gene47822:intron | 15.0% |
| !! | AGTTTCTTGAATTGTAAATA+TGG | - | chr4.3:82755795-82755814 | None:intergenic | 20.0% |
| !!! | AATTTTGTATATGTATTCCT+TGG | + | chr4.3:82755710-82755729 | MS.gene47822:intron | 20.0% |
| !!! | ATAGTAATTTAAGTACGTTT+TGG | + | chr4.3:82755517-82755536 | MS.gene47822:intron | 20.0% |
| !!! | TAATGATTTTCTCAATTCAA+AGG | - | chr4.3:82754592-82754611 | None:intergenic | 20.0% |
| !!! | TTATTTTTTTGGAGAATTTG+AGG | + | chr4.3:82754380-82754399 | MS.gene47822:intron | 20.0% |
| ! | AAATTGTTAAGAGCTTGAAT+TGG | + | chr4.3:82754887-82754906 | MS.gene47822:intron | 25.0% |
| ! | AATTGTTAAGAGCTTGAATT+GGG | + | chr4.3:82754888-82754907 | MS.gene47822:intron | 25.0% |
| ! | ATTGTAAATATGGATGAGAA+AGG | - | chr4.3:82755785-82755804 | None:intergenic | 25.0% |
| ! | ATTTGAGGAAAAAAAGTCAA+AGG | + | chr4.3:82754395-82754414 | MS.gene47822:intron | 25.0% |
| ! | CTAATAATTCTACATGTTTG+TGG | + | chr4.3:82754849-82754868 | MS.gene47822:intron | 25.0% |
| ! | TTGAGAATCACAATCAAATT+TGG | + | chr4.3:82754971-82754990 | MS.gene47822:intron | 25.0% |
| ! | TTGTAAATATGGATGAGAAA+GGG | - | chr4.3:82755784-82755803 | None:intergenic | 25.0% |
| ! | TTTACAATTCAAGAAACTTG+AGG | + | chr4.3:82755797-82755816 | MS.gene47822:intron | 25.0% |
| !! | AAAACTTTAAAAGGTTTCGT+AGG | + | chr4.3:82756654-82756673 | MS.gene47822:intron | 25.0% |
| !! | AAACTTTAAAAGGTTTCGTA+GGG | + | chr4.3:82756655-82756674 | MS.gene47822:intron | 25.0% |
| !! | AGGAACTATAATAAAGTGTT+TGG | + | chr4.3:82756351-82756370 | MS.gene47822:intron | 25.0% |
| !! | TGTTTGTATTCTTTTAAGCA+AGG | + | chr4.3:82754912-82754931 | MS.gene47822:intron | 25.0% |
| !!! | CTTTTAAGCAAGGTTTTAAA+TGG | + | chr4.3:82754922-82754941 | MS.gene47822:intron | 25.0% |
| !!! | TGCTTTTTGTTTTCAAGATA+AGG | + | chr4.3:82755253-82755272 | MS.gene47822:intron | 25.0% |
| !!! | TTTATTTGTTGTATAGTCTC+TGG | + | chr4.3:82756378-82756397 | MS.gene47822:intron | 25.0% |
| !!! | TTTTTGCTTTGATTTGCAAT+TGG | + | chr4.3:82755851-82755870 | MS.gene47822:intron | 25.0% |
| AATGACAATTACACTAACCT+TGG | - | chr4.3:82756197-82756216 | None:intergenic | 30.0% | |
| ACTATTTGTATGGTAGAATG+TGG | + | chr4.3:82755934-82755953 | MS.gene47822:intron | 30.0% | |
| ATATGTATTCCTTGGATTGA+TGG | + | chr4.3:82755718-82755737 | MS.gene47822:intron | 30.0% | |
| ATGGACATACAAATGAATCA+TGG | + | chr4.3:82755291-82755310 | MS.gene47822:CDS | 30.0% | |
| CAAAGCAGTTGAGAAAAAAA+TGG | - | chr4.3:82756005-82756024 | None:intergenic | 30.0% | |
| CCAAATCAAAATCCAAAAAC+TGG | - | chr4.3:82755102-82755121 | None:intergenic | 30.0% | |
| GGAAATGCTCTTAGTTATTA+TGG | + | chr4.3:82755168-82755187 | MS.gene47822:intron | 30.0% | |
| TATGTATTCCTTGGATTGAT+GGG | + | chr4.3:82755719-82755738 | MS.gene47822:intron | 30.0% | |
| TATTTGAAGAGATCAAGTGA+TGG | + | chr4.3:82756725-82756744 | MS.gene47822:intron | 30.0% | |
| TCTGGGAAATAAAATTGTCT+TGG | - | chr4.3:82755745-82755764 | None:intergenic | 30.0% | |
| TGGAACCATCAATAAAAAGA+GGG | - | chr4.3:82756044-82756063 | None:intergenic | 30.0% | |
| TGGACATACAAATGAATCAT+GGG | + | chr4.3:82755292-82755311 | MS.gene47822:CDS | 30.0% | |
| TTAGTTTAAAAAGACACAGC+TGG | - | chr4.3:82756454-82756473 | None:intergenic | 30.0% | |
| TTTCTCAACTGCTTTGTAAT+GGG | + | chr4.3:82756009-82756028 | MS.gene47822:intron | 30.0% | |
| ! | AAATTGGCCTGTTATTTACT+CGG | + | chr4.3:82756254-82756273 | MS.gene47822:intron | 30.0% |
| ! | ATATTTAAAACCCTGCTTCT+AGG | + | chr4.3:82755070-82755089 | MS.gene47822:intron | 30.0% |
| ! | ATCTTTGAAGATCTCTTCAA+CGG | - | chr4.3:82754012-82754031 | None:intergenic | 30.0% |
| ! | TCTTGGAATCAATTTTGCAA+GGG | + | chr4.3:82755364-82755383 | MS.gene47822:CDS | 30.0% |
| ! | TTTTCTCAACTGCTTTGTAA+TGG | + | chr4.3:82756008-82756027 | MS.gene47822:intron | 30.0% |
| !! | CTTTGAAATGTTGAGAATTG+AGG | + | chr4.3:82755631-82755650 | MS.gene47822:intron | 30.0% |
| !! | TGTTAATTGTTGAGTTGAGA+GGG | + | chr4.3:82754350-82754369 | MS.gene47822:intron | 30.0% |
| !! | TTGTTAATTGTTGAGTTGAG+AGG | + | chr4.3:82754349-82754368 | MS.gene47822:intron | 30.0% |
| !!! | AGAAGCAGGGTTTTAAATAT+AGG | - | chr4.3:82755070-82755089 | None:intergenic | 30.0% |
| !!! | CCAGTTTTTGGATTTTGATT+TGG | + | chr4.3:82755099-82755118 | MS.gene47822:intron | 30.0% |
| !!! | TGAAAGGTACTATCTAGTTT+TGG | + | chr4.3:82755487-82755506 | MS.gene47822:intron | 30.0% |
| !!! | TTAAGCAAGGTTTTAAATGG+AGG | + | chr4.3:82754925-82754944 | MS.gene47822:intron | 30.0% |
| AAAGCAGTAAGCCCTTAAAA+CGG | - | chr4.3:82755980-82755999 | None:intergenic | 35.0% | |
| AAAGTAGTGTGAGAGTAGAA+CGG | - | chr4.3:82756494-82756513 | None:intergenic | 35.0% | |
| AAGGACAATTTGTGTCTCTA+TGG | + | chr4.3:82755272-82755291 | MS.gene47822:CDS | 35.0% | |
| AAGGAGGGCGAAATTATTAA+CGG | - | chr4.3:82755895-82755914 | None:intergenic | 35.0% | |
| ACATACAAATGAATCATGGG+AGG | + | chr4.3:82755295-82755314 | MS.gene47822:CDS | 35.0% | |
| AGATTTAACAGACACCTAAG+TGG | + | chr4.3:82755127-82755146 | MS.gene47822:intron | 35.0% | |
| AGTTCCTTTGTGTTTGATTC+AGG | - | chr4.3:82756338-82756357 | None:intergenic | 35.0% | |
| CGACACAATGTTTATGAAGT+TGG | - | chr4.3:82755025-82755044 | None:intergenic | 35.0% | |
| CTAGATAGTACCTTTCATTG+CGG | - | chr4.3:82755484-82755503 | None:intergenic | 35.0% | |
| GCAAAAAGTTACAACAGAGT+CGG | - | chr4.3:82755838-82755857 | None:intergenic | 35.0% | |
| GTGGAACCATCAATAAAAAG+AGG | - | chr4.3:82756045-82756064 | None:intergenic | 35.0% | |
| GTTACAACTTCAAACACAGT+TGG | - | chr4.3:82756112-82756131 | None:intergenic | 35.0% | |
| TGTTAGGGCAACTATTTGTA+TGG | + | chr4.3:82755924-82755943 | MS.gene47822:intron | 35.0% | |
| TTCTCCTGAATCAAACACAA+AGG | + | chr4.3:82756331-82756350 | MS.gene47822:intron | 35.0% | |
| TTGTATAGTCTCTGGTTACT+TGG | + | chr4.3:82756386-82756405 | MS.gene47822:intron | 35.0% | |
| ! | AACGCAGATGAATTTTGGAT+TGG | + | chr4.3:82756848-82756867 | MS.gene47822:CDS | 35.0% |
| ! | ACTACAACGCAGATGAATTT+TGG | + | chr4.3:82756843-82756862 | MS.gene47822:CDS | 35.0% |
| ! | ATCAAAGTGCTTCTAAATGC+AGG | - | chr4.3:82756571-82756590 | None:intergenic | 35.0% |
| ! | CTCTTGGAATCAATTTTGCA+AGG | + | chr4.3:82755363-82755382 | MS.gene47822:CDS | 35.0% |
| ! | CTTTCTGTGGCTTTTTATCT+TGG | + | chr4.3:82755446-82755465 | MS.gene47822:CDS | 35.0% |
| ! | TAGGTCCCTCTTTTTATTGA+TGG | + | chr4.3:82756036-82756055 | MS.gene47822:intron | 35.0% |
| ! | TGTTTGAAGTTGTAACTGAC+AGG | + | chr4.3:82756116-82756135 | MS.gene47822:CDS | 35.0% |
| !! | TAGATAGTGGAAGCAAATCT+CGG | + | chr4.3:82756164-82756183 | MS.gene47822:CDS | 35.0% |
| !! | TCTAGGACATATCCAGTTTT+TGG | + | chr4.3:82755087-82755106 | MS.gene47822:intron | 35.0% |
| !!! | AGGTACTATCTAGTTTTGGT+TGG | + | chr4.3:82755491-82755510 | MS.gene47822:intron | 35.0% |
| !!! | CTCTGTTATTGCCGTTTTAA+GGG | + | chr4.3:82755966-82755985 | MS.gene47822:intron | 35.0% |
| !!! | GCAGGGTTTTAAATATAGGT+TGG | - | chr4.3:82755066-82755085 | None:intergenic | 35.0% |
| !!! | GGTACTATCTAGTTTTGGTT+GGG | + | chr4.3:82755492-82755511 | MS.gene47822:intron | 35.0% |
| AACTGACAGGAAGCCAATAA+AGG | + | chr4.3:82756129-82756148 | MS.gene47822:CDS | 40.0% | |
| ACACACACACACACACAAAT+TGG | + | chr4.3:82756238-82756257 | MS.gene47822:intron | 40.0% | |
| ACTCTGTGATCCAGGTAAAT+GGG | + | chr4.3:82754196-82754215 | MS.gene47822:intron | 40.0% | |
| AGATGATCAAGGTTATGAGG+AGG | + | chr4.3:82756775-82756794 | MS.gene47822:CDS | 40.0% | |
| AGGAGGGCGAAATTATTAAC+GGG | - | chr4.3:82755894-82755913 | None:intergenic | 40.0% | |
| AGTTAAAAGCAACCCGAAGT+TGG | + | chr4.3:82756751-82756770 | MS.gene47822:CDS | 40.0% | |
| ATCGTTCGTGCTTTAACTCA+AGG | + | chr4.3:82754053-82754072 | MS.gene47822:CDS | 40.0% | |
| ATTTGTGAGAGGTGGTATCA+TGG | + | chr4.3:82756878-82756897 | MS.gene47822:CDS | 40.0% | |
| CCTTGATCATCTACCAACTT+CGG | - | chr4.3:82756767-82756786 | None:intergenic | 40.0% | |
| CTAACACAGTGTGATAAGGA+GGG | - | chr4.3:82755910-82755929 | None:intergenic | 40.0% | |
| CTCCTTATCACACTGTGTTA+GGG | + | chr4.3:82755909-82755928 | MS.gene47822:intron | 40.0% | |
| CTTGATCATCTACCAACTTC+GGG | - | chr4.3:82756766-82756785 | None:intergenic | 40.0% | |
| GAAACTTGAGGTTGTGTGAA+AGG | + | chr4.3:82755809-82755828 | MS.gene47822:intron | 40.0% | |
| GATTTCAGTTCTCGTAGAGA+TGG | + | chr4.3:82754029-82754048 | MS.gene47822:CDS | 40.0% | |
| GGTAGATGATCAAGGTTATG+AGG | + | chr4.3:82756772-82756791 | MS.gene47822:CDS | 40.0% | |
| TCTTGAACTACCCATTTACC+TGG | - | chr4.3:82754209-82754228 | None:intergenic | 40.0% | |
| TGTGATTCTCAACAACGTCA+AGG | - | chr4.3:82754963-82754982 | None:intergenic | 40.0% | |
| TTGCTTCCACTATCTACAGT+GGG | - | chr4.3:82756160-82756179 | None:intergenic | 40.0% | |
| TTGGCTGTGATATTTGTGAG+AGG | + | chr4.3:82756867-82756886 | MS.gene47822:CDS | 40.0% | |
| TTTGCTTCCACTATCTACAG+TGG | - | chr4.3:82756161-82756180 | None:intergenic | 40.0% | |
| ! | ACACAGCTGGTTTAGATATC+TGG | - | chr4.3:82756441-82756460 | None:intergenic | 40.0% |
| ! | ACACCTTCAATCAGAAGTGT+CGG | - | chr4.3:82754723-82754742 | None:intergenic | 40.0% |
| ! | GCAAAATTGATTCCAAGAGC+TGG | - | chr4.3:82755362-82755381 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCAAGGGA+TGG | + | chr4.3:82755368-82755387 | MS.gene47822:CDS | 40.0% |
| ! | TGATTCATGGTTGCTTTCTG+TGG | + | chr4.3:82755433-82755452 | MS.gene47822:CDS | 40.0% |
| ! | TTTATGCTCTCAGCTTTAGC+AGG | - | chr4.3:82756923-82756942 | None:intergenic | 40.0% |
| ! | TTTTATGCACTCTGTGATCC+AGG | + | chr4.3:82754188-82754207 | MS.gene47822:CDS | 40.0% |
| !! | AGATAGTGGAAGCAAATCTC+GGG | + | chr4.3:82756165-82756184 | MS.gene47822:CDS | 40.0% |
| !! | CTGCTTTGTAATGGGCTTAT+AGG | + | chr4.3:82756017-82756036 | MS.gene47822:intron | 40.0% |
| !! | TTGATGGTTCCACTGATTCA+TGG | + | chr4.3:82756052-82756071 | MS.gene47822:intron | 40.0% |
| !!! | GCTCTGTTATTGCCGTTTTA+AGG | + | chr4.3:82755965-82755984 | MS.gene47822:intron | 40.0% |
| AAGGGATGGCATGAATCGTA+GGG | + | chr4.3:82755382-82755401 | MS.gene47822:CDS | 45.0% | |
| ACTGGATATGTCCTAGAAGC+AGG | - | chr4.3:82755084-82755103 | None:intergenic | 45.0% | |
| AGCATAGCGAAACCCTTTGT+GGG | + | chr4.3:82756807-82756826 | MS.gene47822:CDS | 45.0% | |
| CACTCTGTGATCCAGGTAAA+TGG | + | chr4.3:82754195-82754214 | MS.gene47822:intron | 45.0% | |
| CCTAACACAGTGTGATAAGG+AGG | - | chr4.3:82755911-82755930 | None:intergenic | 45.0% | |
| CCTCCTTATCACACTGTGTT+AGG | + | chr4.3:82755908-82755927 | MS.gene47822:intron | 45.0% | |
| CGAGTCTAACTCAACCACTT+AGG | - | chr4.3:82755144-82755163 | None:intergenic | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | + | chr4.3:82755471-82755490 | MS.gene47822:CDS | 45.0% | |
| CTGGATATGTCCTAGAAGCA+GGG | - | chr4.3:82755083-82755102 | None:intergenic | 45.0% | |
| GCTAGCTCCGAGTAAATAAC+AGG | - | chr4.3:82756264-82756283 | None:intergenic | 45.0% | |
| GCTGTGATATTTGTGAGAGG+TGG | + | chr4.3:82756870-82756889 | MS.gene47822:CDS | 45.0% | |
| GGAGGGCGAAATTATTAACG+GGG | - | chr4.3:82755893-82755912 | None:intergenic | 45.0% | |
| TGCCCTAACACAGTGTGATA+AGG | - | chr4.3:82755914-82755933 | None:intergenic | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | + | chr4.3:82755420-82755439 | MS.gene47822:CDS | 45.0% | |
| ! | ACAGTGGGCTTGTCCTTTAT+TGG | - | chr4.3:82756145-82756164 | None:intergenic | 45.0% |
| ! | CAGCTGGTTTAGATATCTGG+CGG | - | chr4.3:82756438-82756457 | None:intergenic | 45.0% |
| ! | CTTCTGATTGAAGGTGTGTC+AGG | + | chr4.3:82754726-82754745 | MS.gene47822:intron | 45.0% |
| !! | CCGAAGTTGGTAGATGATCA+AGG | + | chr4.3:82756764-82756783 | MS.gene47822:CDS | 45.0% |
| !! | GATAGTGGAAGCAAATCTCG+GGG | + | chr4.3:82756166-82756185 | MS.gene47822:CDS | 45.0% |
| !!! | ATTTTAGTTTATAATTTTTT+TGG | + | chr4.3:82754558-82754577 | MS.gene47822:intron | 5.0% |
| AAGATCTCTTCAACGGTGCG+AGG | - | chr4.3:82754005-82754024 | None:intergenic | 50.0% | |
| AATCACTGTGCACAGCAACC+AGG | - | chr4.3:82755418-82755437 | None:intergenic | 50.0% | |
| ATCACTGTGCACAGCAACCA+GGG | - | chr4.3:82755417-82755436 | None:intergenic | 50.0% | |
| ATGGCATGAATCGTAGGGAC+TGG | + | chr4.3:82755387-82755406 | MS.gene47822:CDS | 50.0% | |
| CAAGGGATGGCATGAATCGT+AGG | + | chr4.3:82755381-82755400 | MS.gene47822:CDS | 50.0% | |
| CCATCATGCAGCATCAAGAG+GGG | + | chr4.3:82756956-82756975 | MS.gene47822:CDS | 50.0% | |
| CCCATCATGCAGCATCAAGA+GGG | + | chr4.3:82756955-82756974 | MS.gene47822:CDS | 50.0% | |
| CCCTCTTGATGCTGCATGAT+GGG | - | chr4.3:82756958-82756977 | None:intergenic | 50.0% | |
| CGTTTCCTGCCATGAATCAG+TGG | - | chr4.3:82756064-82756083 | None:intergenic | 50.0% | |
| GACAAGCCCACTGTAGATAG+TGG | + | chr4.3:82756151-82756170 | MS.gene47822:CDS | 50.0% | |
| GAGCATAGCGAAACCCTTTG+TGG | + | chr4.3:82756806-82756825 | MS.gene47822:CDS | 50.0% | |
| TCCCAGAAACCTCAGCACAA+GGG | + | chr4.3:82755758-82755777 | MS.gene47822:intron | 50.0% | |
| TGGTTGAGTTAGACTCGTGC+TGG | + | chr4.3:82755147-82755166 | MS.gene47822:intron | 50.0% | |
| TGTCAGTGTCGTGTCAGTGT+AGG | - | chr4.3:82754766-82754785 | None:intergenic | 50.0% | |
| TGTCTTGGCCCATCAATCCA+AGG | - | chr4.3:82755730-82755749 | None:intergenic | 50.0% | |
| TTCCCAGAAACCTCAGCACA+AGG | + | chr4.3:82755757-82755776 | MS.gene47822:intron | 50.0% | |
| ! | GCACCGACACTTCTGATTGA+AGG | + | chr4.3:82754717-82754736 | MS.gene47822:intron | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+TGG | - | chr4.3:82755356-82755375 | None:intergenic | 50.0% |
| !! | ATAGGTTGGTGACCACGTTC+TGG | - | chr4.3:82755052-82755071 | None:intergenic | 50.0% |
| !! | CAGAAGTGTCGGTGCTACAA+AGG | - | chr4.3:82754712-82754731 | None:intergenic | 50.0% |
| !! | TAGGTTGGTGACCACGTTCT+GGG | - | chr4.3:82755051-82755070 | None:intergenic | 50.0% |
| !! | TGGTTCCACTGATTCATGGC+AGG | + | chr4.3:82756056-82756075 | MS.gene47822:intron | 50.0% |
| CCCCTCTTGATGCTGCATGA+TGG | - | chr4.3:82756959-82756978 | None:intergenic | 55.0% | |
| GAAACCCTTTGTGGGAGCTG+CGG | + | chr4.3:82756815-82756834 | MS.gene47822:CDS | 55.0% | |
| GCCCATCATGCAGCATCAAG+AGG | + | chr4.3:82756954-82756973 | MS.gene47822:CDS | 55.0% | |
| GCCCTTGTGCTGAGGTTTCT+GGG | - | chr4.3:82755762-82755781 | None:intergenic | 55.0% | |
| GGAGGTTACTCTTCCTGCTG+AGG | + | chr4.3:82755313-82755332 | MS.gene47822:CDS | 55.0% | |
| TCAGGTGGAACTTCCTCAGC+AGG | - | chr4.3:82755329-82755348 | None:intergenic | 55.0% | |
| TTGTGTCGCATCCCAGAACG+TGG | + | chr4.3:82755037-82755056 | MS.gene47822:intron | 55.0% | |
| CAAATCTCGGGGCAGCACCA+AGG | + | chr4.3:82756177-82756196 | MS.gene47822:CDS | 60.0% | |
| CATGCAGCATCAAGAGGGGC+AGG | + | chr4.3:82756960-82756979 | MS.gene47822:CDS | 60.0% | |
| GAGAAAGGGCCCTTGTGCTG+AGG | - | chr4.3:82755770-82755789 | None:intergenic | 60.0% | |
| GAGCTTCCAGAGCCAGCTCT+TGG | + | chr4.3:82755347-82755366 | MS.gene47822:CDS | 60.0% | |
| GGCCCTTGTGCTGAGGTTTC+TGG | - | chr4.3:82755763-82755782 | None:intergenic | 60.0% | |
| !! | AGAGCTGGCTCTGGAAGCTC+AGG | - | chr4.3:82755347-82755366 | None:intergenic | 60.0% |
| !! | TCGTAGGGACTGGCTTTCCC+TGG | + | chr4.3:82755397-82755416 | MS.gene47822:CDS | 60.0% |
| ACCCTTTGTGGGAGCTGCGG+CGG | + | chr4.3:82756818-82756837 | MS.gene47822:CDS | 65.0% | |
| TCCGCCGCAGCTCCCACAAA+GGG | - | chr4.3:82756822-82756841 | None:intergenic | 65.0% | |
| TTCCGCCGCAGCTCCCACAA+AGG | - | chr4.3:82756823-82756842 | None:intergenic | 65.0% | |
| !! | GCTGGCTCTGGAAGCTCAGG+TGG | - | chr4.3:82755344-82755363 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 82753984 | 82756988 | 82753984 | ID=MS.gene47822 |
| chr4.3 | mRNA | 82753984 | 82756988 | 82753984 | ID=MS.gene47822.t1;Parent=MS.gene47822 |
| chr4.3 | exon | 82753984 | 82754074 | 82753984 | ID=MS.gene47822.t1.exon1;Parent=MS.gene47822.t1 |
| chr4.3 | CDS | 82753984 | 82754074 | 82753984 | ID=cds.MS.gene47822.t1;Parent=MS.gene47822.t1 |
| chr4.3 | exon | 82754177 | 82754209 | 82754177 | ID=MS.gene47822.t1.exon2;Parent=MS.gene47822.t1 |
| chr4.3 | CDS | 82754177 | 82754209 | 82754177 | ID=cds.MS.gene47822.t1;Parent=MS.gene47822.t1 |
| chr4.3 | exon | 82755270 | 82755492 | 82755270 | ID=MS.gene47822.t1.exon3;Parent=MS.gene47822.t1 |
| chr4.3 | CDS | 82755270 | 82755492 | 82755270 | ID=cds.MS.gene47822.t1;Parent=MS.gene47822.t1 |
| chr4.3 | exon | 82756078 | 82756198 | 82756078 | ID=MS.gene47822.t1.exon4;Parent=MS.gene47822.t1 |
| chr4.3 | CDS | 82756078 | 82756198 | 82756078 | ID=cds.MS.gene47822.t1;Parent=MS.gene47822.t1 |
| chr4.3 | exon | 82756734 | 82756988 | 82756734 | ID=MS.gene47822.t1.exon5;Parent=MS.gene47822.t1 |
| chr4.3 | CDS | 82756734 | 82756988 | 82756734 | ID=cds.MS.gene47822.t1;Parent=MS.gene47822.t1 |
| Gene Sequence |
| Protein sequence |
