Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84189.t1 | XP_013449145.1 | 99.6 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 2.00E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84189.t1 | Q9FFF5 | 74.4 | 238 | 59 | 2 | 4 | 241 | 5 | 240 | 5.1e-104 | 378.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84189.t1 | A0A072U0H4 | 99.6 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 1.4e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84189.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84189 | MS.gene94668 | PPI |
| MS.gene77354 | MS.gene84189 | PPI |
| MS.gene47822 | MS.gene84189 | PPI |
| MS.gene95600 | MS.gene84189 | PPI |
| MS.gene037464 | MS.gene84189 | PPI |
| MS.gene94668 | MS.gene84189 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84189.t1 | MTR_7g068590 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 0.0 | 503 |
| MS.gene84189.t1 | MTR_4g015830 | 91.322 | 242 | 19 | 2 | 1 | 242 | 1 | 240 | 2.20e-146 | 408 |
| MS.gene84189.t1 | MTR_4g134510 | 60.956 | 251 | 88 | 4 | 1 | 241 | 4 | 254 | 2.19e-91 | 270 |
| MS.gene84189.t1 | MTR_8g019520 | 58.800 | 250 | 90 | 5 | 6 | 242 | 8 | 257 | 2.27e-88 | 262 |
| MS.gene84189.t1 | MTR_8g019520 | 57.831 | 249 | 93 | 5 | 6 | 242 | 8 | 256 | 4.62e-88 | 261 |
| MS.gene84189.t1 | MTR_1g015185 | 59.459 | 259 | 79 | 5 | 6 | 242 | 9 | 263 | 8.59e-85 | 253 |
| MS.gene84189.t1 | MTR_2g040990 | 56.538 | 260 | 88 | 6 | 1 | 242 | 1 | 253 | 1.01e-84 | 253 |
| MS.gene84189.t1 | MTR_2g099500 | 56.557 | 244 | 96 | 4 | 3 | 236 | 1 | 244 | 7.05e-82 | 245 |
| MS.gene84189.t1 | MTR_1g015185 | 70.992 | 131 | 36 | 1 | 6 | 134 | 9 | 139 | 1.16e-53 | 172 |
| MS.gene84189.t1 | MTR_8g066480 | 42.336 | 137 | 50 | 5 | 116 | 242 | 29 | 146 | 4.48e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84189.t1 | AT5G05610 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 7.44e-117 | 334 |
| MS.gene84189.t1 | AT5G05610 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 7.44e-117 | 334 |
| MS.gene84189.t1 | AT3G11200 | 77.083 | 240 | 54 | 1 | 3 | 241 | 6 | 245 | 2.29e-115 | 330 |
| MS.gene84189.t1 | AT3G11200 | 75.481 | 208 | 50 | 1 | 35 | 241 | 25 | 232 | 1.10e-97 | 285 |
| MS.gene84189.t1 | AT3G42790 | 62.397 | 242 | 84 | 5 | 6 | 241 | 9 | 249 | 7.25e-93 | 273 |
| MS.gene84189.t1 | AT5G20510 | 59.127 | 252 | 88 | 4 | 6 | 242 | 9 | 260 | 7.24e-88 | 261 |
| MS.gene84189.t1 | AT2G02470 | 60.484 | 248 | 86 | 4 | 7 | 242 | 9 | 256 | 8.34e-88 | 261 |
| MS.gene84189.t1 | AT2G02470 | 59.336 | 241 | 91 | 3 | 7 | 242 | 9 | 247 | 1.89e-85 | 254 |
| MS.gene84189.t1 | AT1G14510 | 58.333 | 240 | 93 | 4 | 7 | 239 | 9 | 248 | 9.82e-83 | 248 |
| MS.gene84189.t1 | AT5G26210 | 57.430 | 249 | 95 | 4 | 4 | 241 | 6 | 254 | 2.62e-77 | 234 |
| MS.gene84189.t1 | AT5G20510 | 59.722 | 216 | 72 | 4 | 42 | 242 | 4 | 219 | 3.81e-69 | 212 |
| MS.gene84189.t1 | AT5G20510 | 61.875 | 160 | 56 | 3 | 6 | 160 | 9 | 168 | 1.66e-55 | 176 |
| MS.gene84189.t1 | AT2G02470 | 62.179 | 156 | 57 | 1 | 7 | 160 | 9 | 164 | 5.69e-55 | 177 |
Find 68 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGCTTGTTGTCCTTAAT+TGG | 0.215056 | 7.1:+33339123 | None:intergenic |
| ATTACAATGCCGACGAGTTT+TGG | 0.256361 | 7.1:-33338868 | MS.gene84189:CDS |
| CTTTCTGTGGCGTTCTATCT+TGG | 0.287893 | 7.1:-33340504 | MS.gene84189:CDS |
| TTGCTGTGCACAGTGATTCA+TGG | 0.330962 | 7.1:-33340530 | MS.gene84189:CDS |
| AAGGATAATTTGTGTCTCTA+TGG | 0.357930 | 7.1:-33340678 | MS.gene84189:CDS |
| CTTGTATTGCTTTATGCTCT+CGG | 0.362549 | 7.1:+33338781 | None:intergenic |
| GACCGACAGGAAACCAATTA+AGG | 0.374595 | 7.1:-33339136 | MS.gene84189:CDS |
| TTGCTTCCACTGTCCGCTGC+TGG | 0.382118 | 7.1:+33339105 | None:intergenic |
| CCGTCATCCACAGGAAACTT+TGG | 0.383878 | 7.1:+33338950 | None:intergenic |
| TCCGCCTGACGCTGCATTGA+GGG | 0.392874 | 7.1:+33338756 | None:intergenic |
| AGAGCTGGCTCAGGGAGTTC+CGG | 0.393745 | 7.1:+33340606 | None:intergenic |
| CACTAACCTTGGTGCTTCCT+CGG | 0.397306 | 7.1:+33339079 | None:intergenic |
| TTGCTTTATGCTCTCGGCCT+TGG | 0.413678 | 7.1:+33338787 | None:intergenic |
| CGTCATCCACAGGAAACTTT+GGG | 0.432337 | 7.1:+33338951 | None:intergenic |
| GAACTCCCTGAGCCAGCTCT+TGG | 0.435136 | 7.1:-33340603 | MS.gene84189:CDS |
| TCTCAACTGGGTTATGGAAA+TGG | 0.439069 | 7.1:-33341411 | None:intergenic |
| TCCTGTGGATGACGGTTATG+AGG | 0.442634 | 7.1:-33338942 | MS.gene84189:CDS |
| AGCACAGTGAAACACTTTGC+GGG | 0.443628 | 7.1:-33338904 | MS.gene84189:CDS |
| AGTGCCCTCAATGCAGCGTC+AGG | 0.445124 | 7.1:-33338760 | MS.gene84189:CDS |
| TTTATGCTCTCGGCCTTGGC+AGG | 0.451134 | 7.1:+33338791 | None:intergenic |
| TTCCGCCTGACGCTGCATTG+AGG | 0.462947 | 7.1:+33338755 | None:intergenic |
| TCCGGTGGAACTTCCTCTGC+TGG | 0.464747 | 7.1:+33340624 | None:intergenic |
| ACTAACCTTGGTGCTTCCTC+GGG | 0.472237 | 7.1:+33339080 | None:intergenic |
| TTGATTCCAAGAGCTGGCTC+AGG | 0.473652 | 7.1:+33340597 | None:intergenic |
| ATGGTCATAATAATGAAAGC+TGG | 0.475692 | 7.1:-33340659 | MS.gene84189:CDS |
| ACGGTATGAACCGTAGAGAT+TGG | 0.485613 | 7.1:-33340563 | MS.gene84189:CDS |
| GTCGGTCACAATTTCGAAAA+CGG | 0.493814 | 7.1:+33339152 | None:intergenic |
| GTCCTTAATTGGTTTCCTGT+CGG | 0.494680 | 7.1:+33339134 | None:intergenic |
| TGACGGTTATGAGGAGGAGG+AGG | 0.514089 | 7.1:-33338933 | MS.gene84189:CDS |
| GCAAAATTGATTCCAAGAGC+TGG | 0.521530 | 7.1:+33340591 | None:intergenic |
| TCCTCATAACCGTCATCCAC+AGG | 0.530396 | 7.1:+33338941 | None:intergenic |
| TGGTCATAATAATGAAAGCT+GGG | 0.544113 | 7.1:-33340658 | MS.gene84189:CDS |
| GTTGTTCGTGCTCTCACTCA+AGG | 0.552840 | 7.1:-33341329 | MS.gene84189:intron |
| CAAGAGAAAGCCAATCTCTA+CGG | 0.553772 | 7.1:+33340553 | None:intergenic |
| ATTCGCAGAGATCCAGTGAC+GGG | 0.560137 | 7.1:-33338988 | MS.gene84189:intron |
| GCCAGCAGAGGAAGTTCCAC+CGG | 0.563034 | 7.1:-33340625 | MS.gene84189:CDS |
| AAGATCTCTTCAACGGTACG+AGG | 0.564667 | 7.1:+33341380 | None:intergenic |
| GAAACACTTTGCGGGAGCTG+TGG | 0.565640 | 7.1:-33338896 | MS.gene84189:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.570084 | 7.1:-33340517 | MS.gene84189:CDS |
| ACACTTTGCGGGAGCTGTGG+CGG | 0.573976 | 7.1:-33338893 | MS.gene84189:CDS |
| ATCTTTGAAGATCTCTTCAA+CGG | 0.581501 | 7.1:+33341373 | None:intergenic |
| GCCCTCAATGCAGCGTCAGG+CGG | 0.582004 | 7.1:-33338757 | MS.gene84189:CDS |
| CCAAAGTTTCCTGTGGATGA+CGG | 0.582757 | 7.1:-33338950 | MS.gene84189:CDS |
| GAGCACAGTGAAACACTTTG+CGG | 0.584136 | 7.1:-33338905 | MS.gene84189:CDS |
| GGATGACGGTTATGAGGAGG+AGG | 0.591224 | 7.1:-33338936 | MS.gene84189:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 7.1:-33340479 | MS.gene84189:intron |
| TATGTGAGAGGTGGTACCAT+GGG | 0.596316 | 7.1:-33338832 | MS.gene84189:CDS |
| GTCACAATTTCGAAAACGGT+GGG | 0.600381 | 7.1:+33339156 | None:intergenic |
| TGTGAAGATCACTCCTGCCA+AGG | 0.609845 | 7.1:-33338804 | MS.gene84189:CDS |
| AACAAGCCAGCAGCGGACAG+TGG | 0.616447 | 7.1:-33339111 | MS.gene84189:CDS |
| GCTGGCTCAGGGAGTTCCGG+TGG | 0.616538 | 7.1:+33340609 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.618512 | 7.1:+33338816 | None:intergenic |
| TGATTCCAAGAGCTGGCTCA+GGG | 0.623716 | 7.1:+33340598 | None:intergenic |
| GGAAGTAACTCTGCCAGCAG+AGG | 0.636663 | 7.1:-33340637 | MS.gene84189:CDS |
| TTGAGTGAGAGCACGAACAA+CGG | 0.655872 | 7.1:+33341331 | None:intergenic |
| GGTCACAATTTCGAAAACGG+TGG | 0.656142 | 7.1:+33339155 | None:intergenic |
| AAGCAACCCAAAGTTTCCTG+TGG | 0.656897 | 7.1:-33338957 | MS.gene84189:CDS |
| TTGGTTGTGATATATGTGAG+AGG | 0.665767 | 7.1:-33338844 | MS.gene84189:CDS |
| TGTGGATGACGGTTATGAGG+AGG | 0.666323 | 7.1:-33338939 | MS.gene84189:CDS |
| ACAACCAATCCAAAACTCGT+CGG | 0.669542 | 7.1:+33338859 | None:intergenic |
| AGATCTCTTCAACGGTACGA+GGG | 0.670323 | 7.1:+33341381 | None:intergenic |
| TATTCGCAGAGATCCAGTGA+CGG | 0.673421 | 7.1:-33338989 | MS.gene84189:intron |
| TAAGGACAACAAGCCAGCAG+CGG | 0.678184 | 7.1:-33339118 | MS.gene84189:CDS |
| ATAGAATGTACCTTTCATTG+CGG | 0.683230 | 7.1:+33340469 | None:intergenic |
| GACAGTGGAAGCAAATCCCG+AGG | 0.687670 | 7.1:-33339096 | MS.gene84189:CDS |
| ATATGTGAGAGGTGGTACCA+TGG | 0.697894 | 7.1:-33338833 | MS.gene84189:CDS |
| CAAATCCCGAGGAAGCACCA+AGG | 0.723813 | 7.1:-33339085 | MS.gene84189:intron |
| GTTGTGATATATGTGAGAGG+TGG | 0.732743 | 7.1:-33338841 | MS.gene84189:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAAAAA+CGG | - | chr7.1:33340306-33340325 | MS.gene84189:intron | 0.0% |
| !!! | TTTTTTTATTTTGACTAAAA+GGG | + | chr7.1:33340295-33340314 | None:intergenic | 10.0% |
| !!! | TTTTTTTTATTTTGACTAAA+AGG | + | chr7.1:33340296-33340315 | None:intergenic | 10.0% |
| !! | AACAAAAACAATTACAAAAA+AGG | + | chr7.1:33338906-33338925 | None:intergenic | 15.0% |
| !!! | AAATGTGAATTATTTTAGAT+TGG | - | chr7.1:33339959-33339978 | MS.gene84189:intron | 15.0% |
| !!! | AATGTAATGTATTTGTTTTA+AGG | - | chr7.1:33339329-33339348 | MS.gene84189:intron | 15.0% |
| !!! | ACATTTAATTTTAGTTTATG+TGG | - | chr7.1:33339192-33339211 | MS.gene84189:intron | 15.0% |
| !!! | ATATATCACTTTTCTTTAAT+CGG | - | chr7.1:33340763-33340782 | MS.gene84189:intron | 15.0% |
| !!! | ATTTTTACTAGTATTATCAA+TGG | - | chr7.1:33340024-33340043 | MS.gene84189:intron | 15.0% |
| !!! | TTTATACTTTTTGTTTGTAT+TGG | - | chr7.1:33339056-33339075 | MS.gene84189:intron | 15.0% |
| !!! | TTTTAAAGAATTTGATTAGA+GGG | - | chr7.1:33339167-33339186 | MS.gene84189:CDS | 15.0% |
| !! | ATACTAGTAAAAATTGAAGT+AGG | + | chr7.1:33340018-33340037 | None:intergenic | 20.0% |
| !! | ATTAGTATTACACAATAGAT+TGG | + | chr7.1:33340416-33340435 | None:intergenic | 20.0% |
| !! | TATCAAAAATCCGAAAAAAA+AGG | + | chr7.1:33338871-33338890 | None:intergenic | 20.0% |
| !!! | AATTATTTTAGATTGGTGAT+GGG | - | chr7.1:33339966-33339985 | MS.gene84189:intron | 20.0% |
| !!! | ACATTGAATTTTAGTTTATC+TGG | - | chr7.1:33339369-33339388 | MS.gene84189:intron | 20.0% |
| !!! | ATTTATGAGTGAATTTTTCA+TGG | - | chr7.1:33339302-33339321 | MS.gene84189:intron | 20.0% |
| !!! | GTTTTAAAGAATTTGATTAG+AGG | - | chr7.1:33339166-33339185 | MS.gene84189:CDS | 20.0% |
| !!! | TTATTATGTTTTTCCTCTTA+AGG | - | chr7.1:33340789-33340808 | MS.gene84189:intron | 20.0% |
| !!! | TTTTATGTTGAATTTGACTA+GGG | - | chr7.1:33339130-33339149 | MS.gene84189:CDS | 20.0% |
| !!! | TTTTTATGTTGAATTTGACT+AGG | - | chr7.1:33339129-33339148 | MS.gene84189:CDS | 20.0% |
| ! | AACAAGTATATCACTAGAAA+AGG | + | chr7.1:33341095-33341114 | None:intergenic | 25.0% |
| ! | AACAATGCAACTCATTAAAT+TGG | - | chr7.1:33340473-33340492 | MS.gene84189:intron | 25.0% |
| ! | AACTCATTAAATTGGTATAG+TGG | - | chr7.1:33340481-33340500 | MS.gene84189:CDS | 25.0% |
| ! | ATAGTTTCTAACACTAAACA+AGG | + | chr7.1:33339773-33339792 | None:intergenic | 25.0% |
| ! | ATCTATCAAAATTCTCATCT+GGG | - | chr7.1:33338844-33338863 | MS.gene84189:CDS | 25.0% |
| ! | GAAATACCAAAATTATATGG+CGG | + | chr7.1:33340080-33340099 | None:intergenic | 25.0% |
| ! | TAGAAACTATGGCTTATAAT+TGG | - | chr7.1:33339783-33339802 | MS.gene84189:intron | 25.0% |
| ! | TATCTATCAAAATTCTCATC+TGG | - | chr7.1:33338843-33338862 | MS.gene84189:CDS | 25.0% |
| ! | TTGTTTAGTGTTAGAAACTA+TGG | - | chr7.1:33339772-33339791 | MS.gene84189:intron | 25.0% |
| !! | GTTTTGTGTTTGTTTAGATA+AGG | - | chr7.1:33339446-33339465 | MS.gene84189:intron | 25.0% |
| !! | TAGTGATATACTTGTTTCTT+TGG | - | chr7.1:33341099-33341118 | MS.gene84189:intron | 25.0% |
| !!! | ATTTGTTAATTTTCCTGACT+TGG | + | chr7.1:33339937-33339956 | None:intergenic | 25.0% |
| !!! | GAATTATTTTAGATTGGTGA+TGG | - | chr7.1:33339965-33339984 | MS.gene84189:intron | 25.0% |
| !!! | GCCATATAATTTTGGTATTT+CGG | - | chr7.1:33340079-33340098 | MS.gene84189:intron | 25.0% |
| !!! | TATCTGGTTTTATGATTGTT+AGG | - | chr7.1:33339385-33339404 | MS.gene84189:intron | 25.0% |
| !!! | TCAGATGTTGATGAATTTTA+CGG | - | chr7.1:33338938-33338957 | MS.gene84189:CDS | 25.0% |
| !!! | TGTTATTTTAAGTCTTGCTT+AGG | + | chr7.1:33340669-33340688 | None:intergenic | 25.0% |
| !!! | TTTTAAGGAGTTTGATTAGA+GGG | - | chr7.1:33339344-33339363 | MS.gene84189:intron | 25.0% |
| AAAAGGAAAAACACTAACCT+TGG | + | chr7.1:33341078-33341097 | None:intergenic | 30.0% | |
| AACTTTCATGCTGCATAAAA+AGG | + | chr7.1:33340205-33340224 | None:intergenic | 30.0% | |
| ATAGAATGTACCTTTCATTG+CGG | + | chr7.1:33339677-33339696 | None:intergenic | 30.0% | |
| ATCCTCAATCTTAATCCATA+TGG | - | chr7.1:33340381-33340400 | MS.gene84189:intron | 30.0% | |
| ATGGTCATAATAATGAAAGC+TGG | - | chr7.1:33339484-33339503 | MS.gene84189:intron | 30.0% | |
| ATTACACAATAGATTGGACA+AGG | + | chr7.1:33340410-33340429 | None:intergenic | 30.0% | |
| CAAATACAAGAACAGTGAAA+AGG | + | chr7.1:33340337-33340356 | None:intergenic | 30.0% | |
| CAATGAATACACTCAATCTA+AGG | + | chr7.1:33340858-33340877 | None:intergenic | 30.0% | |
| GCCGAAATACCAAAATTATA+TGG | + | chr7.1:33340083-33340102 | None:intergenic | 30.0% | |
| GTGTTGTGTTTGTTTAGATA+AGG | - | chr7.1:33339265-33339284 | MS.gene84189:intron | 30.0% | |
| TAGATTGAGTGTATTCATTG+TGG | - | chr7.1:33340858-33340877 | MS.gene84189:intron | 30.0% | |
| TGGTCATAATAATGAAAGCT+GGG | - | chr7.1:33339485-33339504 | MS.gene84189:intron | 30.0% | |
| TTACACAATAGATTGGACAA+GGG | + | chr7.1:33340409-33340428 | None:intergenic | 30.0% | |
| ! | AAGGATAATTTGTGTCTCTA+TGG | - | chr7.1:33339465-33339484 | MS.gene84189:intron | 30.0% |
| ! | ATCTTTGAAGATCTCTTCAA+CGG | + | chr7.1:33338773-33338792 | None:intergenic | 30.0% |
| ! | CATTTTATGGTTGATTACAG+AGG | + | chr7.1:33340157-33340176 | None:intergenic | 30.0% |
| ! | TCAATGACAATGACAGATTT+TGG | - | chr7.1:33340047-33340066 | MS.gene84189:intron | 30.0% |
| !! | AGGTTTTATGATGTTGATTG+TGG | + | chr7.1:33340649-33340668 | None:intergenic | 30.0% |
| !! | TATCACTTTTCTTTAATCGG+TGG | - | chr7.1:33340766-33340785 | MS.gene84189:intron | 30.0% |
| !!! | ACTTGTTTCTTTGGTTCTTT+TGG | - | chr7.1:33341108-33341127 | MS.gene84189:intron | 30.0% |
| !!! | GTTTTAAGGAGTTTGATTAG+AGG | - | chr7.1:33339343-33339362 | MS.gene84189:intron | 30.0% |
| AGGTACATTCTATCTTGCTT+TGG | - | chr7.1:33339684-33339703 | MS.gene84189:intron | 35.0% | |
| ATCCAGGTAAAGTGTATTAG+CGG | - | chr7.1:33338969-33338988 | MS.gene84189:CDS | 35.0% | |
| ATGAAAGTTGTGACTTTGGT+TGG | - | chr7.1:33340216-33340235 | MS.gene84189:intron | 35.0% | |
| ATGGTTTCCCTGATTCTTTA+TGG | - | chr7.1:33340930-33340949 | MS.gene84189:intron | 35.0% | |
| ATTGAAGAGAAAGCCTTAAG+AGG | + | chr7.1:33340805-33340824 | None:intergenic | 35.0% | |
| ATTTCACACTTTAGCAACTG+AGG | + | chr7.1:33340592-33340611 | None:intergenic | 35.0% | |
| CACATTTGAGTGTGAATGTT+TGG | + | chr7.1:33340567-33340586 | None:intergenic | 35.0% | |
| CAGATGGTTCCTTATATTGA+TGG | - | chr7.1:33340911-33340930 | MS.gene84189:intron | 35.0% | |
| CATAGAATGTGACAACTTCT+TGG | + | chr7.1:33340244-33340263 | None:intergenic | 35.0% | |
| CTTGTATTGCTTTATGCTCT+CGG | + | chr7.1:33341365-33341384 | None:intergenic | 35.0% | |
| GTCGTAATTGAAGTTCTTTG+TGG | - | chr7.1:33339725-33339744 | MS.gene84189:intron | 35.0% | |
| TACATTCTATCTTGCTTTGG+TGG | - | chr7.1:33339687-33339706 | MS.gene84189:intron | 35.0% | |
| TATGACAACGACTCTGTTAT+AGG | - | chr7.1:33340528-33340547 | MS.gene84189:CDS | 35.0% | |
| TCAGGGAAACCATCAATATA+AGG | + | chr7.1:33340923-33340942 | None:intergenic | 35.0% | |
| TGAAAGTTGTGACTTTGGTT+GGG | - | chr7.1:33340217-33340236 | MS.gene84189:intron | 35.0% | |
| TGGCTTATAATTGGAGTATG+TGG | - | chr7.1:33339792-33339811 | MS.gene84189:intron | 35.0% | |
| TTGGTGGAGATGTTTGTATA+TGG | - | chr7.1:33339703-33339722 | MS.gene84189:intron | 35.0% | |
| TTGGTTGTGATATATGTGAG+AGG | - | chr7.1:33341299-33341318 | MS.gene84189:intron | 35.0% | |
| TTTCCTGCCATAAAGAATCA+GGG | + | chr7.1:33340940-33340959 | None:intergenic | 35.0% | |
| ! | ACCATAAAATGTGATGACGT+AGG | - | chr7.1:33340166-33340185 | MS.gene84189:intron | 35.0% |
| ! | AGCCATATGGATTAAGATTG+AGG | + | chr7.1:33340386-33340405 | None:intergenic | 35.0% |
| ! | GACAATCCGCCATATAATTT+TGG | - | chr7.1:33340071-33340090 | MS.gene84189:intron | 35.0% |
| ! | TAAAATGTGATGACGTAGGA+AGG | - | chr7.1:33340170-33340189 | MS.gene84189:intron | 35.0% |
| ! | TCCTACGTCATCACATTTTA+TGG | + | chr7.1:33340170-33340189 | None:intergenic | 35.0% |
| !! | CTGGATTGGTACATATGTAT+TGG | - | chr7.1:33339851-33339870 | MS.gene84189:intron | 35.0% |
| !! | GTTTTGTTGATATGTGATGC+TGG | - | chr7.1:33339832-33339851 | MS.gene84189:intron | 35.0% |
| !!! | TCATCTGGGTCCTTTTTTTT+CGG | - | chr7.1:33338858-33338877 | MS.gene84189:CDS | 35.0% |
| ACAACCAATCCAAAACTCGT+CGG | + | chr7.1:33341287-33341306 | None:intergenic | 40.0% | |
| AGGCAGATAAAGTAAGCCAT+CGG | + | chr7.1:33340105-33340124 | None:intergenic | 40.0% | |
| ATCCGCTAATACACTTTACC+TGG | + | chr7.1:33338974-33338993 | None:intergenic | 40.0% | |
| ATGGCTTACTTTATCTGCCT+TGG | - | chr7.1:33340105-33340124 | MS.gene84189:intron | 40.0% | |
| ATTCTCAGAGTCGATGGATA+AGG | + | chr7.1:33340448-33340467 | None:intergenic | 40.0% | |
| CAAGAGAAAGCCAATCTCTA+CGG | + | chr7.1:33339593-33339612 | None:intergenic | 40.0% | |
| CAGCATGAAAGTTGTGACTT+TGG | - | chr7.1:33340212-33340231 | MS.gene84189:intron | 40.0% | |
| GAAAGTTGTGACTTTGGTTG+GGG | - | chr7.1:33340218-33340237 | MS.gene84189:intron | 40.0% | |
| GCTAATGTTGCTCGTAACAT+AGG | + | chr7.1:33339908-33339927 | None:intergenic | 40.0% | |
| GGATACTTGAGACTAAGAGA+AGG | + | chr7.1:33340365-33340384 | None:intergenic | 40.0% | |
| GTCACAATTTCGAAAACGGT+GGG | + | chr7.1:33340990-33341009 | None:intergenic | 40.0% | |
| GTCGGTCACAATTTCGAAAA+CGG | + | chr7.1:33340994-33341013 | None:intergenic | 40.0% | |
| GTTGATATGTGATGCTGGAT+TGG | - | chr7.1:33339837-33339856 | MS.gene84189:intron | 40.0% | |
| GTTGTGATATATGTGAGAGG+TGG | - | chr7.1:33341302-33341321 | MS.gene84189:intron | 40.0% | |
| GTTTCCTGCCATAAAGAATC+AGG | + | chr7.1:33340941-33340960 | None:intergenic | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | + | chr7.1:33341330-33341349 | None:intergenic | 40.0% | |
| TTTCCCTGATTCTTTATGGC+AGG | - | chr7.1:33340934-33340953 | MS.gene84189:intron | 40.0% | |
| ! | ATTACAATGCCGACGAGTTT+TGG | - | chr7.1:33341275-33341294 | MS.gene84189:intron | 40.0% |
| ! | GCAAAATTGATTCCAAGAGC+TGG | + | chr7.1:33339555-33339574 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCTCGAGA+CGG | - | chr7.1:33339561-33339580 | MS.gene84189:intron | 40.0% |
| ! | GTCCTTAATTGGTTTCCTGT+CGG | + | chr7.1:33341012-33341031 | None:intergenic | 40.0% |
| ! | TGATTCATGGTTGCTTTCTG+TGG | - | chr7.1:33339626-33339645 | MS.gene84189:intron | 40.0% |
| ! | TTTTCGAAATTGTGACCGAC+AGG | - | chr7.1:33340994-33341013 | MS.gene84189:intron | 40.0% |
| !! | AATTTTGGTATTTCGGCCGA+TGG | - | chr7.1:33340086-33340105 | MS.gene84189:intron | 40.0% |
| !! | TTATCCATCGACTCTGAGAA+TGG | - | chr7.1:33340447-33340466 | MS.gene84189:intron | 40.0% |
| !!! | TTTGGTTCTTTTGGCTCGTT+AGG | - | chr7.1:33341117-33341136 | MS.gene84189:intron | 40.0% |
| AAGATCTCTTCAACGGTACG+AGG | + | chr7.1:33338766-33338785 | None:intergenic | 45.0% | |
| AAGCAACCCAAAGTTTCCTG+TGG | - | chr7.1:33341186-33341205 | MS.gene84189:intron | 45.0% | |
| ACGGTATGAACCGTAGAGAT+TGG | - | chr7.1:33339580-33339599 | MS.gene84189:intron | 45.0% | |
| AGATCTCTTCAACGGTACGA+GGG | + | chr7.1:33338765-33338784 | None:intergenic | 45.0% | |
| AGCACAGTGAAACACTTTGC+GGG | - | chr7.1:33341239-33341258 | MS.gene84189:intron | 45.0% | |
| ATATGTGAGAGGTGGTACCA+TGG | - | chr7.1:33341310-33341329 | MS.gene84189:intron | 45.0% | |
| ATCTGCTGCAACTTCACAGA+TGG | - | chr7.1:33340895-33340914 | MS.gene84189:intron | 45.0% | |
| CACTGGATCTCTGCGAATAA+AGG | + | chr7.1:33341153-33341172 | None:intergenic | 45.0% | |
| CCAAAGTTTCCTGTGGATGA+CGG | - | chr7.1:33341193-33341212 | MS.gene84189:CDS | 45.0% | |
| CGTCATCCACAGGAAACTTT+GGG | + | chr7.1:33341195-33341214 | None:intergenic | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | - | chr7.1:33339664-33339683 | MS.gene84189:intron | 45.0% | |
| CTTTCTGTGGCGTTCTATCT+TGG | - | chr7.1:33339639-33339658 | MS.gene84189:intron | 45.0% | |
| GACCGACAGGAAACCAATTA+AGG | - | chr7.1:33341007-33341026 | MS.gene84189:intron | 45.0% | |
| GAGCACAGTGAAACACTTTG+CGG | - | chr7.1:33341238-33341257 | MS.gene84189:intron | 45.0% | |
| GGTCACAATTTCGAAAACGG+TGG | + | chr7.1:33340991-33341010 | None:intergenic | 45.0% | |
| GTGTTGTCAAATTGCTGCCA+AGG | + | chr7.1:33340125-33340144 | None:intergenic | 45.0% | |
| GTTACGAGCAACATTAGCTG+AGG | - | chr7.1:33339910-33339929 | MS.gene84189:intron | 45.0% | |
| TATGTGAGAGGTGGTACCAT+GGG | - | chr7.1:33341311-33341330 | MS.gene84189:intron | 45.0% | |
| TATTCGCAGAGATCCAGTGA+CGG | - | chr7.1:33341154-33341173 | MS.gene84189:intron | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | - | chr7.1:33339613-33339632 | MS.gene84189:intron | 45.0% | |
| ! | TTGAGTGAGAGCACGAACAA+CGG | + | chr7.1:33338815-33338834 | None:intergenic | 45.0% |
| ! | TTTTACGGTCTCTGTGATCC+AGG | - | chr7.1:33338953-33338972 | MS.gene84189:CDS | 45.0% |
| !! | GCTGGCTTGTTGTCCTTAAT+TGG | + | chr7.1:33341023-33341042 | None:intergenic | 45.0% |
| !!! | AATGCCGACGAGTTTTGGAT+TGG | - | chr7.1:33341280-33341299 | MS.gene84189:intron | 45.0% |
| !! | TAAAAAAAAAAAAAAAAAAC+GGG | - | chr7.1:33340307-33340326 | MS.gene84189:intron | 5.0% |
| ATTCGCAGAGATCCAGTGAC+GGG | - | chr7.1:33341155-33341174 | MS.gene84189:intron | 50.0% | |
| CATTAGCTGAGGTCCAAGTC+AGG | - | chr7.1:33339921-33339940 | MS.gene84189:intron | 50.0% | |
| CCGTCATCCACAGGAAACTT+TGG | + | chr7.1:33341196-33341215 | None:intergenic | 50.0% | |
| GAGTCGATGGATAAGGTCAG+TGG | + | chr7.1:33340441-33340460 | None:intergenic | 50.0% | |
| GATTGGACAAGGGAGCCATA+TGG | + | chr7.1:33340399-33340418 | None:intergenic | 50.0% | |
| GTGTGAATGTTTGGCAGTGC+AGG | + | chr7.1:33340558-33340577 | None:intergenic | 50.0% | |
| GTTGTCATACCAGCAGACAG+CGG | + | chr7.1:33340517-33340536 | None:intergenic | 50.0% | |
| GTTGTTCGTGCTCTCACTCA+AGG | - | chr7.1:33338814-33338833 | MS.gene84189:CDS | 50.0% | |
| TAAGGACAACAAGCCAGCAG+CGG | - | chr7.1:33341025-33341044 | MS.gene84189:intron | 50.0% | |
| TCCTCATAACCGTCATCCAC+AGG | + | chr7.1:33341205-33341224 | None:intergenic | 50.0% | |
| TGCTCCATTCTCAGAGTCGA+TGG | + | chr7.1:33340454-33340473 | None:intergenic | 50.0% | |
| TGTGAAGATCACTCCTGCCA+AGG | - | chr7.1:33341339-33341358 | MS.gene84189:CDS | 50.0% | |
| TTGCTTTATGCTCTCGGCCT+TGG | + | chr7.1:33341359-33341378 | None:intergenic | 50.0% | |
| ! | TCCTGTGGATGACGGTTATG+AGG | - | chr7.1:33341201-33341220 | MS.gene84189:CDS | 50.0% |
| ! | TGATTCCAAGAGCTGGCTCA+GGG | + | chr7.1:33339548-33339567 | None:intergenic | 50.0% |
| ! | TGTGGATGACGGTTATGAGG+AGG | - | chr7.1:33341204-33341223 | MS.gene84189:CDS | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+AGG | + | chr7.1:33339549-33339568 | None:intergenic | 50.0% |
| !! | ACTAACCTTGGTGCTTCCTC+GGG | + | chr7.1:33341066-33341085 | None:intergenic | 50.0% |
| !! | CACTAACCTTGGTGCTTCCT+CGG | + | chr7.1:33341067-33341086 | None:intergenic | 50.0% |
| GAAACACTTTGCGGGAGCTG+TGG | - | chr7.1:33341247-33341266 | MS.gene84189:intron | 55.0% | |
| GACAGTGGAAGCAAATCCCG+AGG | - | chr7.1:33341047-33341066 | MS.gene84189:intron | 55.0% | |
| GGAAGTAACTCTGCCAGCAG+AGG | - | chr7.1:33339506-33339525 | MS.gene84189:intron | 55.0% | |
| TGACGGTTATGAGGAGGAGG+AGG | - | chr7.1:33341210-33341229 | MS.gene84189:intron | 55.0% | |
| TTGTAGTCACCGCTGTCTGC+TGG | - | chr7.1:33340505-33340524 | MS.gene84189:CDS | 55.0% | |
| TTTATGCTCTCGGCCTTGGC+AGG | + | chr7.1:33341355-33341374 | None:intergenic | 55.0% | |
| ! | GGATGACGGTTATGAGGAGG+AGG | - | chr7.1:33341207-33341226 | MS.gene84189:intron | 55.0% |
| !! | CAAATCCCGAGGAAGCACCA+AGG | - | chr7.1:33341058-33341077 | MS.gene84189:intron | 55.0% |
| !!! | GCTTTTGACTTGCCCGTCAC+TGG | + | chr7.1:33341170-33341189 | None:intergenic | 55.0% |
| AACAAGCCAGCAGCGGACAG+TGG | - | chr7.1:33341032-33341051 | MS.gene84189:intron | 60.0% | |
| ACACTTTGCGGGAGCTGTGG+CGG | - | chr7.1:33341250-33341269 | MS.gene84189:intron | 60.0% | |
| AGTGCCCTCAATGCAGCGTC+AGG | - | chr7.1:33341383-33341402 | MS.gene84189:CDS | 60.0% | |
| GAACTCCCTGAGCCAGCTCT+TGG | - | chr7.1:33339540-33339559 | MS.gene84189:intron | 60.0% | |
| GCCAGCAGAGGAAGTTCCAC+CGG | - | chr7.1:33339518-33339537 | MS.gene84189:intron | 60.0% | |
| TCCGCCTGACGCTGCATTGA+GGG | + | chr7.1:33341390-33341409 | None:intergenic | 60.0% | |
| TCCGGTGGAACTTCCTCTGC+TGG | + | chr7.1:33339522-33339541 | None:intergenic | 60.0% | |
| TTCCGCCTGACGCTGCATTG+AGG | + | chr7.1:33341391-33341410 | None:intergenic | 60.0% | |
| TTGCTTCCACTGTCCGCTGC+TGG | + | chr7.1:33341041-33341060 | None:intergenic | 60.0% | |
| ! | AGAGCTGGCTCAGGGAGTTC+CGG | + | chr7.1:33339540-33339559 | None:intergenic | 60.0% |
| GCCCTCAATGCAGCGTCAGG+CGG | - | chr7.1:33341386-33341405 | MS.gene84189:CDS | 65.0% | |
| ! | GCTGGCTCAGGGAGTTCCGG+TGG | + | chr7.1:33339537-33339556 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 33338745 | 33341420 | 33338745 | ID=MS.gene84189 |
| chr7.1 | mRNA | 33338745 | 33341420 | 33338745 | ID=MS.gene84189.t1;Parent=MS.gene84189 |
| chr7.1 | exon | 33341330 | 33341420 | 33341330 | ID=MS.gene84189.t1.exon1;Parent=MS.gene84189.t1 |
| chr7.1 | CDS | 33341330 | 33341420 | 33341330 | ID=cds.MS.gene84189.t1;Parent=MS.gene84189.t1 |
| chr7.1 | exon | 33341191 | 33341223 | 33341191 | ID=MS.gene84189.t1.exon2;Parent=MS.gene84189.t1 |
| chr7.1 | CDS | 33341191 | 33341223 | 33341191 | ID=cds.MS.gene84189.t1;Parent=MS.gene84189.t1 |
| chr7.1 | exon | 33340480 | 33340702 | 33340480 | ID=MS.gene84189.t1.exon3;Parent=MS.gene84189.t1 |
| chr7.1 | CDS | 33340480 | 33340702 | 33340480 | ID=cds.MS.gene84189.t1;Parent=MS.gene84189.t1 |
| chr7.1 | exon | 33339086 | 33339209 | 33339086 | ID=MS.gene84189.t1.exon4;Parent=MS.gene84189.t1 |
| chr7.1 | CDS | 33339086 | 33339209 | 33339086 | ID=cds.MS.gene84189.t1;Parent=MS.gene84189.t1 |
| chr7.1 | exon | 33338745 | 33339002 | 33338745 | ID=MS.gene84189.t1.exon5;Parent=MS.gene84189.t1 |
| chr7.1 | CDS | 33338745 | 33339002 | 33338745 | ID=cds.MS.gene84189.t1;Parent=MS.gene84189.t1 |
| Gene Sequence |
| Protein sequence |
