Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94668.t1 | XP_013449145.1 | 100 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 1.10E-139 | 505.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94668.t1 | Q9FFF5 | 74.4 | 238 | 59 | 2 | 4 | 241 | 5 | 240 | 5.1e-104 | 378.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94668.t1 | A0A072U0H4 | 100.0 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 8.3e-140 | 505.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene94668.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84189 | MS.gene94668 | PPI |
| MS.gene77354 | MS.gene94668 | PPI |
| MS.gene47822 | MS.gene94668 | PPI |
| MS.gene95600 | MS.gene94668 | PPI |
| MS.gene94668 | MS.gene84189 | PPI |
| MS.gene037464 | MS.gene94668 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94668.t1 | MTR_7g068590 | 100.000 | 242 | 0 | 0 | 1 | 242 | 1 | 242 | 0.0 | 503 |
| MS.gene94668.t1 | MTR_4g015830 | 91.736 | 242 | 18 | 2 | 1 | 242 | 1 | 240 | 1.27e-146 | 409 |
| MS.gene94668.t1 | MTR_4g134510 | 61.355 | 251 | 87 | 4 | 1 | 241 | 4 | 254 | 1.31e-91 | 270 |
| MS.gene94668.t1 | MTR_8g019520 | 58.800 | 250 | 90 | 5 | 6 | 242 | 8 | 257 | 2.79e-88 | 262 |
| MS.gene94668.t1 | MTR_8g019520 | 57.831 | 249 | 93 | 5 | 6 | 242 | 8 | 256 | 5.20e-88 | 261 |
| MS.gene94668.t1 | MTR_1g015185 | 59.459 | 259 | 79 | 5 | 6 | 242 | 9 | 263 | 9.58e-85 | 253 |
| MS.gene94668.t1 | MTR_2g040990 | 56.538 | 260 | 88 | 6 | 1 | 242 | 1 | 253 | 1.23e-84 | 253 |
| MS.gene94668.t1 | MTR_2g099500 | 56.557 | 244 | 96 | 4 | 3 | 236 | 1 | 244 | 7.37e-82 | 245 |
| MS.gene94668.t1 | MTR_1g015185 | 70.992 | 131 | 36 | 1 | 6 | 134 | 9 | 139 | 1.24e-53 | 172 |
| MS.gene94668.t1 | MTR_8g066480 | 42.336 | 137 | 50 | 5 | 116 | 242 | 29 | 146 | 4.72e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94668.t1 | AT5G05610 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.29e-116 | 333 |
| MS.gene94668.t1 | AT5G05610 | 73.950 | 238 | 60 | 1 | 4 | 241 | 5 | 240 | 1.29e-116 | 333 |
| MS.gene94668.t1 | AT3G11200 | 77.083 | 240 | 54 | 1 | 3 | 241 | 6 | 245 | 3.28e-115 | 330 |
| MS.gene94668.t1 | AT3G11200 | 75.481 | 208 | 50 | 1 | 35 | 241 | 25 | 232 | 1.76e-97 | 284 |
| MS.gene94668.t1 | AT3G42790 | 62.397 | 242 | 84 | 5 | 6 | 241 | 9 | 249 | 7.66e-93 | 273 |
| MS.gene94668.t1 | AT5G20510 | 59.127 | 252 | 88 | 4 | 6 | 242 | 9 | 260 | 7.48e-88 | 261 |
| MS.gene94668.t1 | AT2G02470 | 60.484 | 248 | 86 | 4 | 7 | 242 | 9 | 256 | 8.07e-88 | 261 |
| MS.gene94668.t1 | AT2G02470 | 59.336 | 241 | 91 | 3 | 7 | 242 | 9 | 247 | 2.13e-85 | 254 |
| MS.gene94668.t1 | AT1G14510 | 58.333 | 240 | 93 | 4 | 7 | 239 | 9 | 248 | 1.30e-82 | 247 |
| MS.gene94668.t1 | AT5G26210 | 57.430 | 249 | 95 | 4 | 4 | 241 | 6 | 254 | 2.92e-77 | 234 |
| MS.gene94668.t1 | AT5G20510 | 59.722 | 216 | 72 | 4 | 42 | 242 | 4 | 219 | 4.21e-69 | 212 |
| MS.gene94668.t1 | AT5G20510 | 61.875 | 160 | 56 | 3 | 6 | 160 | 9 | 168 | 1.67e-55 | 176 |
| MS.gene94668.t1 | AT2G02470 | 62.179 | 156 | 57 | 1 | 7 | 160 | 9 | 164 | 5.57e-55 | 177 |
Find 67 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGCTTGTTGTCCTTAAT+TGG | 0.215056 | 7.3:+36684806 | None:intergenic |
| ATTACAATGCCGACGAGTTT+TGG | 0.256361 | 7.3:-36684551 | MS.gene94668:CDS |
| CTTTCTGTGGCGTTCTATCT+TGG | 0.287893 | 7.3:-36686149 | MS.gene94668:CDS |
| TTGCTGTGCACAGTGATTCA+TGG | 0.330962 | 7.3:-36686175 | MS.gene94668:CDS |
| AAGGATAATTTGTGTCTCTA+TGG | 0.357930 | 7.3:-36686323 | MS.gene94668:CDS |
| CTTGTATTGCTTTATGCTCT+CGG | 0.362549 | 7.3:+36684464 | None:intergenic |
| GACCGACAGGAAACCAATTA+AGG | 0.374595 | 7.3:-36684819 | MS.gene94668:CDS |
| CACTAACTTTGGTGCTTCCT+CGG | 0.381914 | 7.3:+36684762 | None:intergenic |
| TTGCTTCCACTGTCCGCTGC+TGG | 0.382118 | 7.3:+36684788 | None:intergenic |
| CCGTCATCCACAGGAAACTT+TGG | 0.383878 | 7.3:+36684633 | None:intergenic |
| AGAGCTGGCTCAGGGAGTTC+CGG | 0.393745 | 7.3:+36686251 | None:intergenic |
| TCTCAATTGGGTTATGGAAA+TGG | 0.397199 | 7.3:-36687084 | None:intergenic |
| TTGCTTTATGCTCTCGGCCT+TGG | 0.413678 | 7.3:+36684470 | None:intergenic |
| CGTCATCCACAGGAAACTTT+GGG | 0.432337 | 7.3:+36684634 | None:intergenic |
| GAACTCCCTGAGCCAGCTCT+TGG | 0.435136 | 7.3:-36686248 | MS.gene94668:CDS |
| TCCTGTGGATGACGGTTATG+AGG | 0.442634 | 7.3:-36684625 | MS.gene94668:CDS |
| AGCACAGTGAAACACTTTGC+GGG | 0.443628 | 7.3:-36684587 | MS.gene94668:CDS |
| TCCGCCTGATGCTGCATTGA+GGG | 0.446153 | 7.3:+36684439 | None:intergenic |
| TTTATGCTCTCGGCCTTGGC+AGG | 0.451134 | 7.3:+36684474 | None:intergenic |
| ACTAACTTTGGTGCTTCCTC+GGG | 0.462866 | 7.3:+36684763 | None:intergenic |
| TCCGGTGGAACTTCCTCTGC+TGG | 0.464747 | 7.3:+36686269 | None:intergenic |
| AGTGCCCTCAATGCAGCATC+AGG | 0.465718 | 7.3:-36684443 | MS.gene94668:CDS |
| TTGATTCCAAGAGCTGGCTC+AGG | 0.473652 | 7.3:+36686242 | None:intergenic |
| ATGGTCATAATAATGAAAGC+TGG | 0.475692 | 7.3:-36686304 | MS.gene94668:CDS |
| ACGGTATGAACCGTAGAGAT+TGG | 0.485613 | 7.3:-36686208 | MS.gene94668:CDS |
| GTCGGTCACAATTTCGAAAA+CGG | 0.493814 | 7.3:+36684835 | None:intergenic |
| GTCCTTAATTGGTTTCCTGT+CGG | 0.494680 | 7.3:+36684817 | None:intergenic |
| TTCCGCCTGATGCTGCATTG+AGG | 0.510891 | 7.3:+36684438 | None:intergenic |
| TGACGGTTATGAGGAGGAGG+AGG | 0.514089 | 7.3:-36684616 | MS.gene94668:CDS |
| GCAAAATTGATTCCAAGAGC+TGG | 0.521530 | 7.3:+36686236 | None:intergenic |
| TCCTCATAACCGTCATCCAC+AGG | 0.530396 | 7.3:+36684624 | None:intergenic |
| TGGTCATAATAATGAAAGCT+GGG | 0.544113 | 7.3:-36686303 | MS.gene94668:CDS |
| GTTGTTCGTGCTCTCACTCA+AGG | 0.552840 | 7.3:-36687002 | MS.gene94668:intron |
| CAAGAGAAAGCCAATCTCTA+CGG | 0.553772 | 7.3:+36686198 | None:intergenic |
| ATTCGCAGAGATCCAGTGAC+GGG | 0.560137 | 7.3:-36684671 | MS.gene94668:intron |
| GCCAGCAGAGGAAGTTCCAC+CGG | 0.563034 | 7.3:-36686270 | MS.gene94668:CDS |
| AAGATCTCTTCAACGGTACG+AGG | 0.564667 | 7.3:+36687053 | None:intergenic |
| GAAACACTTTGCGGGAGCTG+TGG | 0.565640 | 7.3:-36684579 | MS.gene94668:CDS |
| TGATTCATGGTTGCTTTCTG+TGG | 0.570084 | 7.3:-36686162 | MS.gene94668:CDS |
| ACACTTTGCGGGAGCTGTGG+CGG | 0.573976 | 7.3:-36684576 | MS.gene94668:CDS |
| ATCTTTGAAGATCTCTTCAA+CGG | 0.581501 | 7.3:+36687046 | None:intergenic |
| CCAAAGTTTCCTGTGGATGA+CGG | 0.582757 | 7.3:-36684633 | MS.gene94668:CDS |
| GAGCACAGTGAAACACTTTG+CGG | 0.584136 | 7.3:-36684588 | MS.gene94668:CDS |
| GGATGACGGTTATGAGGAGG+AGG | 0.591224 | 7.3:-36684619 | MS.gene94668:CDS |
| CTCGTCTTAACCGCAATGAA+AGG | 0.595014 | 7.3:-36686124 | MS.gene94668:intron |
| TATGTGAGAGGTGGTACCAT+GGG | 0.596316 | 7.3:-36684515 | MS.gene94668:CDS |
| GTCACAATTTCGAAAACGGT+GGG | 0.600381 | 7.3:+36684839 | None:intergenic |
| TGTGAAGATCACTCCTGCCA+AGG | 0.609845 | 7.3:-36684487 | MS.gene94668:CDS |
| AAGCAACCCAAAGTTTCCTG+TGG | 0.613678 | 7.3:-36684640 | MS.gene94668:CDS |
| AACAAGCCAGCAGCGGACAG+TGG | 0.616447 | 7.3:-36684794 | MS.gene94668:CDS |
| GCTGGCTCAGGGAGTTCCGG+TGG | 0.616538 | 7.3:+36686254 | None:intergenic |
| TGATCTTCACACATTTCCCA+TGG | 0.618512 | 7.3:+36684499 | None:intergenic |
| TGATTCCAAGAGCTGGCTCA+GGG | 0.623716 | 7.3:+36686243 | None:intergenic |
| GGAAGTAACTCTGCCAGCAG+AGG | 0.636663 | 7.3:-36686282 | MS.gene94668:CDS |
| GCCCTCAATGCAGCATCAGG+CGG | 0.644933 | 7.3:-36684440 | MS.gene94668:CDS |
| TTGAGTGAGAGCACGAACAA+CGG | 0.655872 | 7.3:+36687004 | None:intergenic |
| GGTCACAATTTCGAAAACGG+TGG | 0.656142 | 7.3:+36684838 | None:intergenic |
| TTGGTTGTGATATATGTGAG+AGG | 0.665767 | 7.3:-36684527 | MS.gene94668:CDS |
| TGTGGATGACGGTTATGAGG+AGG | 0.666323 | 7.3:-36684622 | MS.gene94668:CDS |
| ACAACCAATCCAAAACTCGT+CGG | 0.669542 | 7.3:+36684542 | None:intergenic |
| AGATCTCTTCAACGGTACGA+GGG | 0.670323 | 7.3:+36687054 | None:intergenic |
| TATTCGCAGAGATCCAGTGA+CGG | 0.673421 | 7.3:-36684672 | MS.gene94668:intron |
| TAAGGACAACAAGCCAGCAG+CGG | 0.678184 | 7.3:-36684801 | MS.gene94668:CDS |
| ATAGAATGTACCTTTCATTG+CGG | 0.683230 | 7.3:+36686114 | None:intergenic |
| GACAGTGGAAGCAAATCCCG+AGG | 0.687670 | 7.3:-36684779 | MS.gene94668:CDS |
| ATATGTGAGAGGTGGTACCA+TGG | 0.697894 | 7.3:-36684516 | MS.gene94668:CDS |
| GTTGTGATATATGTGAGAGG+TGG | 0.732743 | 7.3:-36684524 | MS.gene94668:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAAAAAAAAAAAT+TGG | - | chr7.3:36686016-36686035 | MS.gene94668:intron | 0.0% |
| !! | AAATAAAAAAAAAAAAAATT+GGG | - | chr7.3:36686017-36686036 | MS.gene94668:intron | 0.0% |
| !!! | TTTATACTTTTTGTTTTTAT+TGG | - | chr7.3:36684745-36684764 | MS.gene94668:intron | 10.0% |
| !!! | TTTTTTTTATTTTGACTAAA+AGG | + | chr7.3:36686009-36686028 | None:intergenic | 10.0% |
| !! | AACAAAAACAATTACAAAAA+AGG | + | chr7.3:36684589-36684608 | None:intergenic | 15.0% |
| !!! | AAATGTGAATTATTTTAGAT+TGG | - | chr7.3:36685672-36685691 | MS.gene94668:intron | 15.0% |
| !!! | AATGTAATGTATTTGTTTTA+AGG | - | chr7.3:36685040-36685059 | MS.gene94668:intron | 15.0% |
| !!! | ACATTTAATTTTAGTTTATG+TGG | - | chr7.3:36684880-36684899 | MS.gene94668:intron | 15.0% |
| !!! | ATATATCACTTTTCTTTAAT+CGG | - | chr7.3:36686436-36686455 | MS.gene94668:intron | 15.0% |
| !!! | ATTTTTACTAGTATTATCAA+TGG | - | chr7.3:36685737-36685756 | MS.gene94668:intron | 15.0% |
| !!! | TTTTAAAGAATTTGATTAGA+GGG | - | chr7.3:36684855-36684874 | MS.gene94668:CDS | 15.0% |
| !! | ATACTAGTAAAAATTGAAGT+AGG | + | chr7.3:36685731-36685750 | None:intergenic | 20.0% |
| !! | TATCAAAAATCCGAAAAAAA+AGG | + | chr7.3:36684554-36684573 | None:intergenic | 20.0% |
| !!! | AATTATTTTAGATTGGTGAT+GGG | - | chr7.3:36685679-36685698 | MS.gene94668:intron | 20.0% |
| !!! | ACATTGAATTTTAGTTTATC+TGG | - | chr7.3:36685080-36685099 | MS.gene94668:intron | 20.0% |
| !!! | GTTTTAAAGAATTTGATTAG+AGG | - | chr7.3:36684854-36684873 | MS.gene94668:CDS | 20.0% |
| !!! | TTATTATGTTTTTCCTCTTA+AGG | - | chr7.3:36686462-36686481 | MS.gene94668:intron | 20.0% |
| !!! | TTTTAAGGAATTTGATTAGA+GGG | - | chr7.3:36685055-36685074 | MS.gene94668:intron | 20.0% |
| ! | AACAAGTATATCACTAGAAA+AGG | + | chr7.3:36686768-36686787 | None:intergenic | 25.0% |
| ! | ACAAGTATATCACTAGAAAA+GGG | + | chr7.3:36686767-36686786 | None:intergenic | 25.0% |
| ! | ATAGTTTCTAACACTAAACA+AGG | + | chr7.3:36685484-36685503 | None:intergenic | 25.0% |
| ! | ATCTATCAAAATTCTCATCT+GGG | - | chr7.3:36684527-36684546 | MS.gene94668:CDS | 25.0% |
| ! | GAAATACCAAAATTATATGG+CGG | + | chr7.3:36685793-36685812 | None:intergenic | 25.0% |
| ! | TAGAAACTATGGCTTATAAT+TGG | - | chr7.3:36685494-36685513 | MS.gene94668:intron | 25.0% |
| ! | TATCTATCAAAATTCTCATC+TGG | - | chr7.3:36684526-36684545 | MS.gene94668:CDS | 25.0% |
| ! | TGGAATGTTAAATTTGACTA+GGG | - | chr7.3:36685013-36685032 | MS.gene94668:intron | 25.0% |
| ! | TTGGAATGTTAAATTTGACT+AGG | - | chr7.3:36685012-36685031 | MS.gene94668:intron | 25.0% |
| ! | TTGTTTAGTGTTAGAAACTA+TGG | - | chr7.3:36685483-36685502 | MS.gene94668:intron | 25.0% |
| ! | TTTCTTGTTGAATTTGACTA+GGG | - | chr7.3:36684818-36684837 | MS.gene94668:CDS | 25.0% |
| !! | GTTTTGTGTTTGTTTAGATA+AGG | - | chr7.3:36685157-36685176 | MS.gene94668:intron | 25.0% |
| !! | TAGTGATATACTTGTTTCTT+TGG | - | chr7.3:36686772-36686791 | MS.gene94668:intron | 25.0% |
| !! | TTTTCTTGTTGAATTTGACT+AGG | - | chr7.3:36684817-36684836 | MS.gene94668:CDS | 25.0% |
| !!! | ATTTGTTAATTTTCCTGACT+TGG | + | chr7.3:36685650-36685669 | None:intergenic | 25.0% |
| !!! | GAATTATTTTAGATTGGTGA+TGG | - | chr7.3:36685678-36685697 | MS.gene94668:intron | 25.0% |
| !!! | GCCATATAATTTTGGTATTT+CGG | - | chr7.3:36685792-36685811 | MS.gene94668:intron | 25.0% |
| !!! | GTTTTAAGGAATTTGATTAG+AGG | - | chr7.3:36685054-36685073 | MS.gene94668:intron | 25.0% |
| !!! | TATCTGGTTTTATGATTGTT+AGG | - | chr7.3:36685096-36685115 | MS.gene94668:intron | 25.0% |
| !!! | TCAGATGTTGATGAATTTTA+CGG | - | chr7.3:36684621-36684640 | MS.gene94668:CDS | 25.0% |
| !!! | TGTTATTTTAAGTCTTGCTT+AGG | + | chr7.3:36686338-36686357 | None:intergenic | 25.0% |
| AAAAGGGAAAACACTAACTT+TGG | + | chr7.3:36686751-36686770 | None:intergenic | 30.0% | |
| AACAATGCAACTCATTAGAT+TGG | - | chr7.3:36686158-36686177 | MS.gene94668:CDS | 30.0% | |
| AACTCATTAGATTGGTATAG+TGG | - | chr7.3:36686166-36686185 | MS.gene94668:CDS | 30.0% | |
| AACTTTCATGCTGCATAAAA+AGG | + | chr7.3:36685918-36685937 | None:intergenic | 30.0% | |
| ATAGAATGTACCTTTCATTG+CGG | + | chr7.3:36685388-36685407 | None:intergenic | 30.0% | |
| ATGGTCATAATAATGAAAGC+TGG | - | chr7.3:36685195-36685214 | MS.gene94668:intron | 30.0% | |
| ATTACACAATAGATTGGACA+AGG | + | chr7.3:36686101-36686120 | None:intergenic | 30.0% | |
| CAATGAATACACTCAATCTA+AGG | + | chr7.3:36686531-36686550 | None:intergenic | 30.0% | |
| GCCGAAATACCAAAATTATA+TGG | + | chr7.3:36685796-36685815 | None:intergenic | 30.0% | |
| GTCGTTATTACACAATAGAT+TGG | + | chr7.3:36686107-36686126 | None:intergenic | 30.0% | |
| TAGATTGAGTGTATTCATTG+TGG | - | chr7.3:36686531-36686550 | MS.gene94668:intron | 30.0% | |
| TGGTCATAATAATGAAAGCT+GGG | - | chr7.3:36685196-36685215 | MS.gene94668:intron | 30.0% | |
| TTACACAATAGATTGGACAA+GGG | + | chr7.3:36686100-36686119 | None:intergenic | 30.0% | |
| ! | AAGGATAATTTGTGTCTCTA+TGG | - | chr7.3:36685176-36685195 | MS.gene94668:intron | 30.0% |
| ! | ATCTTTGAAGATCTCTTCAA+CGG | + | chr7.3:36684456-36684475 | None:intergenic | 30.0% |
| ! | CATTTTATGGTTGATTACAG+AGG | + | chr7.3:36685870-36685889 | None:intergenic | 30.0% |
| ! | TCAATGACAATGACAGATTT+TGG | - | chr7.3:36685760-36685779 | MS.gene94668:intron | 30.0% |
| ! | TGTTATGTGTGAATTTTGCA+TGG | - | chr7.3:36684790-36684809 | MS.gene94668:CDS | 30.0% |
| !! | AGGTTTTATGATGTTGATTG+TGG | + | chr7.3:36686318-36686337 | None:intergenic | 30.0% |
| !! | TATCACTTTTCTTTAATCGG+TGG | - | chr7.3:36686439-36686458 | MS.gene94668:intron | 30.0% |
| !!! | ACTTGTTTCTTTGGTTCTTT+TGG | - | chr7.3:36686781-36686800 | MS.gene94668:intron | 30.0% |
| AGGTACATTCTATCTTGCTT+TGG | - | chr7.3:36685395-36685414 | MS.gene94668:intron | 35.0% | |
| ATCCAGGTAAAGTGTATTAG+CGG | - | chr7.3:36684652-36684671 | MS.gene94668:CDS | 35.0% | |
| ATGAAAGTTGTGACTTTGGT+TGG | - | chr7.3:36685929-36685948 | MS.gene94668:intron | 35.0% | |
| ATGGTTTCCCTGATTCTTTA+TGG | - | chr7.3:36686603-36686622 | MS.gene94668:intron | 35.0% | |
| ATTGAAGAGAAAGCCTTAAG+AGG | + | chr7.3:36686478-36686497 | None:intergenic | 35.0% | |
| ATTTCACACTTTAGCAACTG+AGG | + | chr7.3:36686277-36686296 | None:intergenic | 35.0% | |
| CACATTTGAGTGTGAATGTT+TGG | + | chr7.3:36686252-36686271 | None:intergenic | 35.0% | |
| CAGATGGTTCCTTATATTGA+TGG | - | chr7.3:36686584-36686603 | MS.gene94668:intron | 35.0% | |
| CATAGAATGTGACAACTTCT+TGG | + | chr7.3:36685957-36685976 | None:intergenic | 35.0% | |
| CTTGTATTGCTTTATGCTCT+CGG | + | chr7.3:36687038-36687057 | None:intergenic | 35.0% | |
| GTCGTAATTGAAGTTCTTTG+CGG | - | chr7.3:36685436-36685455 | MS.gene94668:intron | 35.0% | |
| GTGTTGTGTTTGTTTCGATA+AGG | - | chr7.3:36684940-36684959 | MS.gene94668:intron | 35.0% | |
| TACATTCTATCTTGCTTTGG+TGG | - | chr7.3:36685398-36685417 | MS.gene94668:intron | 35.0% | |
| TATGACAACGACTCTGTTAT+AGG | - | chr7.3:36686213-36686232 | MS.gene94668:CDS | 35.0% | |
| TCAGGGAAACCATCAATATA+AGG | + | chr7.3:36686596-36686615 | None:intergenic | 35.0% | |
| TGAAAGTTGTGACTTTGGTT+GGG | - | chr7.3:36685930-36685949 | MS.gene94668:intron | 35.0% | |
| TGGCTTATAATTGGAGTATG+TGG | - | chr7.3:36685503-36685522 | MS.gene94668:intron | 35.0% | |
| TTGGTGGAGATGTTTGTATA+TGG | - | chr7.3:36685414-36685433 | MS.gene94668:intron | 35.0% | |
| TTGGTTGTGATATATGTGAG+AGG | - | chr7.3:36686972-36686991 | MS.gene94668:intron | 35.0% | |
| TTTCCTGCCATAAAGAATCA+GGG | + | chr7.3:36686613-36686632 | None:intergenic | 35.0% | |
| ! | ACCATAAAATGTGATGACGT+AGG | - | chr7.3:36685879-36685898 | MS.gene94668:intron | 35.0% |
| ! | GACAATCCGCCATATAATTT+TGG | - | chr7.3:36685784-36685803 | MS.gene94668:intron | 35.0% |
| ! | TAAAATGTGATGACGTAGGA+AGG | - | chr7.3:36685883-36685902 | MS.gene94668:intron | 35.0% |
| ! | TCCTACGTCATCACATTTTA+TGG | + | chr7.3:36685883-36685902 | None:intergenic | 35.0% |
| ! | TGCATCATTCTTCGTTTTGT+TGG | - | chr7.3:36684993-36685012 | MS.gene94668:intron | 35.0% |
| ! | TTATCCATCAACTCTGAGAA+TGG | - | chr7.3:36686132-36686151 | MS.gene94668:CDS | 35.0% |
| !! | ATTCTCAGAGTTGATGGATA+AGG | + | chr7.3:36686133-36686152 | None:intergenic | 35.0% |
| !! | GTTTTGTTGATATGTGATGC+TGG | - | chr7.3:36685543-36685562 | MS.gene94668:intron | 35.0% |
| !!! | TCATCTGGGTCCTTTTTTTT+CGG | - | chr7.3:36684541-36684560 | MS.gene94668:CDS | 35.0% |
| ACAACCAATCCAAAACTCGT+CGG | + | chr7.3:36686960-36686979 | None:intergenic | 40.0% | |
| ACTAAGAGAAGACTGCGAAA+AGG | + | chr7.3:36686047-36686066 | None:intergenic | 40.0% | |
| AGGCAGATAAAGTAAGCCAT+CGG | + | chr7.3:36685818-36685837 | None:intergenic | 40.0% | |
| ATCCGCTAATACACTTTACC+TGG | + | chr7.3:36684657-36684676 | None:intergenic | 40.0% | |
| ATGGCTTACTTTATCTGCCT+TGG | - | chr7.3:36685818-36685837 | MS.gene94668:intron | 40.0% | |
| CAAGAGAAAGCCAATCTCTA+CGG | + | chr7.3:36685304-36685323 | None:intergenic | 40.0% | |
| CAGCATGAAAGTTGTGACTT+TGG | - | chr7.3:36685925-36685944 | MS.gene94668:intron | 40.0% | |
| GAAAGTTGTGACTTTGGTTG+GGG | - | chr7.3:36685931-36685950 | MS.gene94668:intron | 40.0% | |
| GCTAATGTTGCTCGTAACAT+AGG | + | chr7.3:36685621-36685640 | None:intergenic | 40.0% | |
| GTCACAATTTCGAAAACGGT+GGG | + | chr7.3:36686663-36686682 | None:intergenic | 40.0% | |
| GTCGGTCACAATTTCGAAAA+CGG | + | chr7.3:36686667-36686686 | None:intergenic | 40.0% | |
| GTCTCCTCAATCTTAATCCA+TGG | - | chr7.3:36686072-36686091 | MS.gene94668:intron | 40.0% | |
| GTTGATATGTGATGCTGGAT+TGG | - | chr7.3:36685548-36685567 | MS.gene94668:intron | 40.0% | |
| GTTGTGATATATGTGAGAGG+TGG | - | chr7.3:36686975-36686994 | MS.gene94668:intron | 40.0% | |
| GTTTCCTGCCATAAAGAATC+AGG | + | chr7.3:36686614-36686633 | None:intergenic | 40.0% | |
| TGATCTTCACACATTTCCCA+TGG | + | chr7.3:36687003-36687022 | None:intergenic | 40.0% | |
| TTTCCCTGATTCTTTATGGC+AGG | - | chr7.3:36686607-36686626 | MS.gene94668:intron | 40.0% | |
| ! | ATTACAATGCCGACGAGTTT+TGG | - | chr7.3:36686948-36686967 | MS.gene94668:intron | 40.0% |
| ! | GCAAAATTGATTCCAAGAGC+TGG | + | chr7.3:36685266-36685285 | None:intergenic | 40.0% |
| ! | GGAACCATGGATTAAGATTG+AGG | + | chr7.3:36686079-36686098 | None:intergenic | 40.0% |
| ! | GGAATCAATTTTGCTCGAGA+CGG | - | chr7.3:36685272-36685291 | MS.gene94668:intron | 40.0% |
| ! | GGATTGGTACATACATGCAT+TGG | - | chr7.3:36685564-36685583 | MS.gene94668:intron | 40.0% |
| ! | GTCCTTAATTGGTTTCCTGT+CGG | + | chr7.3:36686685-36686704 | None:intergenic | 40.0% |
| ! | TGATTCATGGTTGCTTTCTG+TGG | - | chr7.3:36685337-36685356 | MS.gene94668:intron | 40.0% |
| ! | TTTTCGAAATTGTGACCGAC+AGG | - | chr7.3:36686667-36686686 | MS.gene94668:intron | 40.0% |
| !! | AATTTTGGTATTTCGGCCGA+TGG | - | chr7.3:36685799-36685818 | MS.gene94668:intron | 40.0% |
| !!! | TTTGGTTCTTTTGGCTCGTT+AGG | - | chr7.3:36686790-36686809 | MS.gene94668:intron | 40.0% |
| AAGATCTCTTCAACGGTACG+AGG | + | chr7.3:36684449-36684468 | None:intergenic | 45.0% | |
| AAGCAACCCAAAGTTTCCTG+TGG | - | chr7.3:36686859-36686878 | MS.gene94668:intron | 45.0% | |
| ACGGTATGAACCGTAGAGAT+TGG | - | chr7.3:36685291-36685310 | MS.gene94668:intron | 45.0% | |
| AGATCTCTTCAACGGTACGA+GGG | + | chr7.3:36684448-36684467 | None:intergenic | 45.0% | |
| AGCACAGTGAAACACTTTGC+GGG | - | chr7.3:36686912-36686931 | MS.gene94668:intron | 45.0% | |
| ATATGTGAGAGGTGGTACCA+TGG | - | chr7.3:36686983-36687002 | MS.gene94668:intron | 45.0% | |
| ATCTGCTGCAACTTCACAGA+TGG | - | chr7.3:36686568-36686587 | MS.gene94668:intron | 45.0% | |
| CACTGGATCTCTGCGAATAA+AGG | + | chr7.3:36686826-36686845 | None:intergenic | 45.0% | |
| CCAAAGTTTCCTGTGGATGA+CGG | - | chr7.3:36686866-36686885 | MS.gene94668:CDS | 45.0% | |
| CGTCATCCACAGGAAACTTT+GGG | + | chr7.3:36686868-36686887 | None:intergenic | 45.0% | |
| CTCGTCTTAACCGCAATGAA+AGG | - | chr7.3:36685375-36685394 | MS.gene94668:intron | 45.0% | |
| CTTTCTGTGGCGTTCTATCT+TGG | - | chr7.3:36685350-36685369 | MS.gene94668:intron | 45.0% | |
| GACCGACAGGAAACCAATTA+AGG | - | chr7.3:36686680-36686699 | MS.gene94668:intron | 45.0% | |
| GAGCACAGTGAAACACTTTG+CGG | - | chr7.3:36686911-36686930 | MS.gene94668:intron | 45.0% | |
| GGTCACAATTTCGAAAACGG+TGG | + | chr7.3:36686664-36686683 | None:intergenic | 45.0% | |
| GTGTTGTCAAATTGCTGCCA+AGG | + | chr7.3:36685838-36685857 | None:intergenic | 45.0% | |
| GTTACGAGCAACATTAGCTG+AGG | - | chr7.3:36685623-36685642 | MS.gene94668:intron | 45.0% | |
| TAGATTGGACAAGGGAACCA+TGG | + | chr7.3:36686092-36686111 | None:intergenic | 45.0% | |
| TATGTGAGAGGTGGTACCAT+GGG | - | chr7.3:36686984-36687003 | MS.gene94668:intron | 45.0% | |
| TATTCGCAGAGATCCAGTGA+CGG | - | chr7.3:36686827-36686846 | MS.gene94668:intron | 45.0% | |
| TGCTCCATTCTCAGAGTTGA+TGG | + | chr7.3:36686139-36686158 | None:intergenic | 45.0% | |
| TTGCTGTGCACAGTGATTCA+TGG | - | chr7.3:36685324-36685343 | MS.gene94668:intron | 45.0% | |
| ! | TTGAGTGAGAGCACGAACAA+CGG | + | chr7.3:36684498-36684517 | None:intergenic | 45.0% |
| ! | TTTTACGGTCTCTGTGATCC+AGG | - | chr7.3:36684636-36684655 | MS.gene94668:CDS | 45.0% |
| !! | ACTAACTTTGGTGCTTCCTC+GGG | + | chr7.3:36686739-36686758 | None:intergenic | 45.0% |
| !! | CACTAACTTTGGTGCTTCCT+CGG | + | chr7.3:36686740-36686759 | None:intergenic | 45.0% |
| !! | GCTGGCTTGTTGTCCTTAAT+TGG | + | chr7.3:36686696-36686715 | None:intergenic | 45.0% |
| !!! | AATGCCGACGAGTTTTGGAT+TGG | - | chr7.3:36686953-36686972 | MS.gene94668:intron | 45.0% |
| ATTCGCAGAGATCCAGTGAC+GGG | - | chr7.3:36686828-36686847 | MS.gene94668:intron | 50.0% | |
| CATTAGCTGAGGTCCAAGTC+AGG | - | chr7.3:36685634-36685653 | MS.gene94668:intron | 50.0% | |
| CCGTCATCCACAGGAAACTT+TGG | + | chr7.3:36686869-36686888 | None:intergenic | 50.0% | |
| GTGTGAATGTTTGGCAGTGC+AGG | + | chr7.3:36686243-36686262 | None:intergenic | 50.0% | |
| GTTGTCATACCAGCAGACAG+CGG | + | chr7.3:36686202-36686221 | None:intergenic | 50.0% | |
| GTTGTTCGTGCTCTCACTCA+AGG | - | chr7.3:36684497-36684516 | MS.gene94668:CDS | 50.0% | |
| TAAGGACAACAAGCCAGCAG+CGG | - | chr7.3:36686698-36686717 | MS.gene94668:intron | 50.0% | |
| TCCTCATAACCGTCATCCAC+AGG | + | chr7.3:36686878-36686897 | None:intergenic | 50.0% | |
| TGTGAAGATCACTCCTGCCA+AGG | - | chr7.3:36687012-36687031 | MS.gene94668:CDS | 50.0% | |
| TTGCTTTATGCTCTCGGCCT+TGG | + | chr7.3:36687032-36687051 | None:intergenic | 50.0% | |
| ! | TCCTGTGGATGACGGTTATG+AGG | - | chr7.3:36686874-36686893 | MS.gene94668:CDS | 50.0% |
| ! | TGATTCCAAGAGCTGGCTCA+GGG | + | chr7.3:36685259-36685278 | None:intergenic | 50.0% |
| ! | TGTGGATGACGGTTATGAGG+AGG | - | chr7.3:36686877-36686896 | MS.gene94668:CDS | 50.0% |
| ! | TTGATTCCAAGAGCTGGCTC+AGG | + | chr7.3:36685260-36685279 | None:intergenic | 50.0% |
| !!! | GCTTTTAACTTGCCCGTCAC+TGG | + | chr7.3:36686843-36686862 | None:intergenic | 50.0% |
| AGTGCCCTCAATGCAGCATC+AGG | - | chr7.3:36687056-36687075 | MS.gene94668:CDS | 55.0% | |
| GAAACACTTTGCGGGAGCTG+TGG | - | chr7.3:36686920-36686939 | MS.gene94668:intron | 55.0% | |
| GACAGTGGAAGCAAATCCCG+AGG | - | chr7.3:36686720-36686739 | MS.gene94668:intron | 55.0% | |
| GGAAGTAACTCTGCCAGCAG+AGG | - | chr7.3:36685217-36685236 | MS.gene94668:intron | 55.0% | |
| TCCGCCTGATGCTGCATTGA+GGG | + | chr7.3:36687063-36687082 | None:intergenic | 55.0% | |
| TGACGGTTATGAGGAGGAGG+AGG | - | chr7.3:36686883-36686902 | MS.gene94668:intron | 55.0% | |
| TTCCGCCTGATGCTGCATTG+AGG | + | chr7.3:36687064-36687083 | None:intergenic | 55.0% | |
| TTGTAGTCACCGCTGTCTGC+TGG | - | chr7.3:36686190-36686209 | MS.gene94668:CDS | 55.0% | |
| TTTATGCTCTCGGCCTTGGC+AGG | + | chr7.3:36687028-36687047 | None:intergenic | 55.0% | |
| ! | GGATGACGGTTATGAGGAGG+AGG | - | chr7.3:36686880-36686899 | MS.gene94668:intron | 55.0% |
| AACAAGCCAGCAGCGGACAG+TGG | - | chr7.3:36686705-36686724 | MS.gene94668:intron | 60.0% | |
| ACACTTTGCGGGAGCTGTGG+CGG | - | chr7.3:36686923-36686942 | MS.gene94668:intron | 60.0% | |
| GAACTCCCTGAGCCAGCTCT+TGG | - | chr7.3:36685251-36685270 | MS.gene94668:intron | 60.0% | |
| GCCAGCAGAGGAAGTTCCAC+CGG | - | chr7.3:36685229-36685248 | MS.gene94668:intron | 60.0% | |
| GCCCTCAATGCAGCATCAGG+CGG | - | chr7.3:36687059-36687078 | MS.gene94668:CDS | 60.0% | |
| TCCGGTGGAACTTCCTCTGC+TGG | + | chr7.3:36685233-36685252 | None:intergenic | 60.0% | |
| TTGCTTCCACTGTCCGCTGC+TGG | + | chr7.3:36686714-36686733 | None:intergenic | 60.0% | |
| ! | AGAGCTGGCTCAGGGAGTTC+CGG | + | chr7.3:36685251-36685270 | None:intergenic | 60.0% |
| ! | GCTGGCTCAGGGAGTTCCGG+TGG | + | chr7.3:36685248-36685267 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 36684428 | 36687093 | 36684428 | ID=MS.gene94668 |
| chr7.3 | mRNA | 36684428 | 36687093 | 36684428 | ID=MS.gene94668.t1;Parent=MS.gene94668 |
| chr7.3 | exon | 36687003 | 36687093 | 36687003 | ID=MS.gene94668.t1.exon1;Parent=MS.gene94668.t1 |
| chr7.3 | CDS | 36687003 | 36687093 | 36687003 | ID=cds.MS.gene94668.t1;Parent=MS.gene94668.t1 |
| chr7.3 | exon | 36686864 | 36686896 | 36686864 | ID=MS.gene94668.t1.exon2;Parent=MS.gene94668.t1 |
| chr7.3 | CDS | 36686864 | 36686896 | 36686864 | ID=cds.MS.gene94668.t1;Parent=MS.gene94668.t1 |
| chr7.3 | exon | 36686125 | 36686347 | 36686125 | ID=MS.gene94668.t1.exon3;Parent=MS.gene94668.t1 |
| chr7.3 | CDS | 36686125 | 36686347 | 36686125 | ID=cds.MS.gene94668.t1;Parent=MS.gene94668.t1 |
| chr7.3 | exon | 36684769 | 36684892 | 36684769 | ID=MS.gene94668.t1.exon4;Parent=MS.gene94668.t1 |
| chr7.3 | CDS | 36684769 | 36684892 | 36684769 | ID=cds.MS.gene94668.t1;Parent=MS.gene94668.t1 |
| chr7.3 | exon | 36684428 | 36684685 | 36684428 | ID=MS.gene94668.t1.exon5;Parent=MS.gene94668.t1 |
| chr7.3 | CDS | 36684428 | 36684685 | 36684428 | ID=cds.MS.gene94668.t1;Parent=MS.gene94668.t1 |
| Gene Sequence |
| Protein sequence |
