Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037826.t1 | XP_003626748.1 | 91.8 | 232 | 19 | 0 | 1 | 232 | 47 | 278 | 5.50E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037826.t1 | O80477 | 41.5 | 236 | 130 | 4 | 2 | 232 | 30 | 262 | 1.4e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037826.t1 | G7LCH3 | 91.8 | 232 | 19 | 0 | 1 | 232 | 47 | 278 | 4.0e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28543 | MS.gene037826 | PPI |
| MS.gene037826 | MS.gene041151 | PPI |
| MS.gene047689 | MS.gene037826 | PPI |
| MS.gene87350 | MS.gene037826 | PPI |
| MS.gene037826 | MS.gene011884 | PPI |
| MS.gene010412 | MS.gene037826 | PPI |
| MS.gene037826 | MS.gene44962 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037826.t1 | MTR_8g008660 | 91.810 | 232 | 19 | 0 | 1 | 232 | 47 | 278 | 1.35e-157 | 438 |
| MS.gene037826.t1 | MTR_3g464040 | 82.759 | 232 | 40 | 0 | 1 | 232 | 39 | 270 | 1.28e-140 | 394 |
| MS.gene037826.t1 | MTR_8g008505 | 77.778 | 234 | 50 | 1 | 1 | 232 | 48 | 281 | 1.74e-128 | 364 |
| MS.gene037826.t1 | MTR_8g008500 | 74.790 | 238 | 54 | 2 | 1 | 232 | 47 | 284 | 1.20e-123 | 352 |
| MS.gene037826.t1 | MTR_8g007675 | 68.511 | 235 | 71 | 1 | 1 | 232 | 52 | 286 | 5.66e-111 | 320 |
| MS.gene037826.t1 | MTR_8g007670 | 58.298 | 235 | 94 | 2 | 2 | 232 | 28 | 262 | 1.42e-93 | 275 |
| MS.gene037826.t1 | MTR_8g007670 | 52.586 | 232 | 68 | 2 | 2 | 232 | 28 | 218 | 5.52e-78 | 234 |
| MS.gene037826.t1 | MTR_5g018300 | 49.153 | 236 | 115 | 3 | 1 | 232 | 28 | 262 | 2.19e-75 | 229 |
| MS.gene037826.t1 | MTR_5g018320 | 48.729 | 236 | 116 | 3 | 1 | 232 | 25 | 259 | 3.70e-74 | 226 |
| MS.gene037826.t1 | MTR_5g018280 | 48.729 | 236 | 115 | 4 | 1 | 232 | 28 | 261 | 7.13e-73 | 223 |
| MS.gene037826.t1 | MTR_5g018365 | 39.149 | 235 | 133 | 5 | 2 | 232 | 33 | 261 | 7.40e-48 | 159 |
| MS.gene037826.t1 | MTR_8g079120 | 37.872 | 235 | 136 | 5 | 2 | 232 | 32 | 260 | 5.54e-45 | 151 |
| MS.gene037826.t1 | MTR_5g018350 | 35.622 | 233 | 144 | 4 | 2 | 232 | 28 | 256 | 9.52e-43 | 145 |
| MS.gene037826.t1 | MTR_5g068100 | 33.480 | 227 | 132 | 4 | 1 | 218 | 50 | 266 | 5.75e-35 | 126 |
| MS.gene037826.t1 | MTR_3g093730 | 32.883 | 222 | 139 | 3 | 1 | 218 | 56 | 271 | 4.02e-32 | 119 |
| MS.gene037826.t1 | MTR_7g015220 | 33.476 | 233 | 146 | 4 | 1 | 229 | 144 | 371 | 4.91e-31 | 117 |
| MS.gene037826.t1 | MTR_3g005410 | 31.915 | 235 | 150 | 6 | 1 | 230 | 114 | 343 | 9.01e-30 | 114 |
| MS.gene037826.t1 | MTR_5g008130 | 63.636 | 77 | 28 | 0 | 156 | 232 | 4 | 80 | 5.15e-28 | 102 |
| MS.gene037826.t1 | MTR_8g079120 | 41.007 | 139 | 77 | 3 | 2 | 137 | 74 | 210 | 4.51e-27 | 103 |
| MS.gene037826.t1 | MTR_3g093730 | 27.523 | 218 | 111 | 4 | 1 | 218 | 56 | 226 | 4.38e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037826.t1 | AT2G23610 | 41.525 | 236 | 130 | 4 | 2 | 232 | 30 | 262 | 6.78e-54 | 174 |
| MS.gene037826.t1 | AT2G23620 | 42.017 | 238 | 128 | 5 | 1 | 232 | 29 | 262 | 5.34e-51 | 167 |
| MS.gene037826.t1 | AT3G50440 | 38.983 | 236 | 136 | 3 | 2 | 232 | 42 | 274 | 9.87e-51 | 166 |
| MS.gene037826.t1 | AT2G23600 | 40.336 | 238 | 132 | 5 | 1 | 232 | 29 | 262 | 2.18e-50 | 165 |
| MS.gene037826.t1 | AT2G23600 | 40.336 | 238 | 132 | 5 | 1 | 232 | 44 | 277 | 3.59e-50 | 165 |
| MS.gene037826.t1 | AT2G23590 | 39.149 | 235 | 130 | 7 | 1 | 232 | 47 | 271 | 4.34e-48 | 159 |
| MS.gene037826.t1 | AT2G23580 | 39.331 | 239 | 132 | 7 | 2 | 232 | 29 | 262 | 9.56e-48 | 158 |
| MS.gene037826.t1 | AT2G23550 | 37.238 | 239 | 137 | 6 | 2 | 232 | 36 | 269 | 6.49e-43 | 146 |
| MS.gene037826.t1 | AT2G23550 | 37.238 | 239 | 137 | 6 | 2 | 232 | 29 | 262 | 6.78e-43 | 146 |
| MS.gene037826.t1 | AT4G37150 | 36.975 | 238 | 139 | 7 | 1 | 232 | 23 | 255 | 2.23e-41 | 142 |
| MS.gene037826.t1 | AT2G23560 | 34.468 | 235 | 146 | 5 | 2 | 232 | 29 | 259 | 6.93e-40 | 138 |
| MS.gene037826.t1 | AT5G10300 | 37.712 | 236 | 139 | 5 | 1 | 232 | 26 | 257 | 1.54e-39 | 137 |
| MS.gene037826.t1 | AT1G33990 | 33.761 | 234 | 145 | 5 | 2 | 230 | 118 | 346 | 1.76e-38 | 137 |
| MS.gene037826.t1 | AT2G23610 | 36.638 | 232 | 102 | 6 | 2 | 232 | 30 | 217 | 3.77e-38 | 132 |
| MS.gene037826.t1 | AT3G29770 | 37.179 | 234 | 138 | 4 | 1 | 230 | 158 | 386 | 1.81e-37 | 135 |
| MS.gene037826.t1 | AT4G09900 | 32.906 | 234 | 147 | 5 | 2 | 230 | 119 | 347 | 1.93e-35 | 129 |
| MS.gene037826.t1 | AT1G26360 | 33.333 | 234 | 147 | 4 | 1 | 230 | 209 | 437 | 6.18e-34 | 126 |
| MS.gene037826.t1 | AT1G69240 | 32.203 | 236 | 149 | 6 | 1 | 230 | 207 | 437 | 4.08e-32 | 121 |
| MS.gene037826.t1 | AT5G58310 | 31.513 | 238 | 148 | 5 | 2 | 229 | 26 | 258 | 2.09e-31 | 116 |
| MS.gene037826.t1 | AT3G10870 | 32.189 | 233 | 152 | 2 | 1 | 229 | 40 | 270 | 3.63e-31 | 115 |
| MS.gene037826.t1 | AT4G16690 | 32.900 | 231 | 142 | 6 | 1 | 226 | 32 | 254 | 4.14e-30 | 112 |
| MS.gene037826.t1 | AT2G23550 | 32.353 | 238 | 121 | 6 | 2 | 232 | 29 | 233 | 9.80e-29 | 108 |
| MS.gene037826.t1 | AT2G23570 | 37.017 | 181 | 104 | 4 | 58 | 232 | 2 | 178 | 3.12e-28 | 105 |
| MS.gene037826.t1 | AT2G23600 | 41.259 | 143 | 77 | 3 | 1 | 137 | 44 | 185 | 5.50e-28 | 105 |
| MS.gene037826.t1 | AT2G23580 | 39.716 | 141 | 77 | 4 | 2 | 135 | 29 | 168 | 4.44e-26 | 100 |
| MS.gene037826.t1 | AT2G23550 | 37.589 | 141 | 80 | 3 | 2 | 135 | 36 | 175 | 1.76e-22 | 91.7 |
| MS.gene037826.t1 | AT5G10300 | 39.161 | 143 | 82 | 3 | 1 | 139 | 26 | 167 | 2.51e-22 | 90.9 |
| MS.gene037826.t1 | AT4G37140 | 46.988 | 83 | 44 | 0 | 1 | 83 | 23 | 105 | 3.06e-22 | 89.0 |
| MS.gene037826.t1 | AT4G37140 | 42.857 | 70 | 40 | 0 | 1 | 70 | 23 | 92 | 1.57e-16 | 72.8 |
Find 45 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTTTCATGACATTTA+TGG | 0.081031 | 8.3:+80263342 | MS.gene037826:CDS |
| TAGATTAGATGACATGATTT+TGG | 0.151203 | 8.3:-80263810 | None:intergenic |
| TCCCATTTGAGAAGAATAAT+TGG | 0.207905 | 8.3:-80263754 | None:intergenic |
| ATTCTTGTGGGTCATAGTTT+TGG | 0.257233 | 8.3:+80263391 | MS.gene037826:CDS |
| TTTGACACTTGGATTATCTT+TGG | 0.299103 | 8.3:+80264269 | MS.gene037826:CDS |
| TCCCAATTATTCTTCTCAAA+TGG | 0.322968 | 8.3:+80263752 | MS.gene037826:CDS |
| ATCACTTTCACCTTAACATA+TGG | 0.333062 | 8.3:-80264450 | None:intergenic |
| CCCAATTATTCTTCTCAAAT+GGG | 0.384721 | 8.3:+80263753 | MS.gene037826:CDS |
| CACCCTTCCATTCCTCTCCT+TGG | 0.397125 | 8.3:-80264349 | None:intergenic |
| CCCATTTGAGAAGAATAATT+GGG | 0.417231 | 8.3:-80263753 | None:intergenic |
| CAAGCGCAGGATTTGACACT+TGG | 0.426425 | 8.3:+80264258 | MS.gene037826:intron |
| CACAAGAATCACCTTCTCCT+TGG | 0.435596 | 8.3:-80263377 | None:intergenic |
| CGCATAGAATTCCACTCGAC+AGG | 0.437272 | 8.3:+80263724 | MS.gene037826:intron |
| TTGCTGATGATGAAGACTTT+AGG | 0.448268 | 8.3:-80264372 | None:intergenic |
| ACAAGAATCACCTTCTCCTT+GGG | 0.467997 | 8.3:-80263376 | None:intergenic |
| TGAATCTCTTGAACCTGTGT+TGG | 0.477571 | 8.3:-80263301 | None:intergenic |
| GAGTACTCGTCCATATGTTA+AGG | 0.484652 | 8.3:+80264440 | MS.gene037826:CDS |
| GATACCCTTATCTGTTGCTA+TGG | 0.489986 | 8.3:+80263417 | MS.gene037826:CDS |
| AAGGAGAAGGTGATTCTTGT+GGG | 0.501737 | 8.3:+80263379 | MS.gene037826:CDS |
| TCCTCCAACTGCCTCACTGT+GGG | 0.502459 | 8.3:+80263784 | MS.gene037826:CDS |
| TAATGTTACAACTATTGACT+TGG | 0.521866 | 8.3:+80263261 | MS.gene037826:CDS |
| GGTCCCCACAGTGAGGCAGT+TGG | 0.530212 | 8.3:-80263788 | None:intergenic |
| TATGGAATCTCTTCGTCCCA+AGG | 0.537531 | 8.3:+80263360 | MS.gene037826:CDS |
| ATCTCTTCGTCCCAAGGAGA+AGG | 0.541417 | 8.3:+80263366 | MS.gene037826:CDS |
| GCAACTATGCTGAAATCAGC+TGG | 0.546791 | 8.3:+80263235 | None:intergenic |
| AGAGTTACCAAGGAGAGGAA+TGG | 0.547036 | 8.3:+80264342 | MS.gene037826:CDS |
| CAAGGAGAAGGTGATTCTTG+TGG | 0.551500 | 8.3:+80263378 | MS.gene037826:CDS |
| CCCCACAGTGAGGCAGTTGG+AGG | 0.558116 | 8.3:-80263785 | None:intergenic |
| TTACCAAGGAGAGGAATGGA+AGG | 0.564907 | 8.3:+80264346 | MS.gene037826:CDS |
| CACTTGGATTATCTTTGGTG+AGG | 0.571116 | 8.3:+80264274 | MS.gene037826:CDS |
| ACTATTGACTTGGCTGCTTG+TGG | 0.574234 | 8.3:+80263271 | MS.gene037826:CDS |
| GTTAAGGTGAAAGTGATAAG+TGG | 0.578209 | 8.3:+80264456 | MS.gene037826:CDS |
| GATTCCATAAATGTCATGAA+AGG | 0.596705 | 8.3:-80263346 | None:intergenic |
| ACAAGACAATTTGTTGACAG+AGG | 0.600544 | 8.3:+80264395 | MS.gene037826:CDS |
| AAACAAGAGTTACCAAGGAG+AGG | 0.608738 | 8.3:+80264337 | MS.gene037826:CDS |
| TTGGGATTCTCCCTGTCGAG+TGG | 0.612439 | 8.3:-80263735 | None:intergenic |
| GAAAGAAACAAGAGTTACCA+AGG | 0.616024 | 8.3:+80264332 | MS.gene037826:CDS |
| GATAAGTGGTTCAGATCACA+TGG | 0.632899 | 8.3:+80264470 | MS.gene037826:CDS |
| ATCCTCCAACTGCCTCACTG+TGG | 0.644239 | 8.3:+80263783 | MS.gene037826:CDS |
| GCATAGAATTCCACTCGACA+GGG | 0.646394 | 8.3:+80263725 | MS.gene037826:intron |
| ATATCAATTATCTCCTCATG+AGG | 0.650480 | 8.3:+80263832 | MS.gene037826:CDS |
| AGCAATATTTAGAATGTGTG+AGG | 0.667904 | 8.3:-80264520 | None:intergenic |
| CCTCCAACTGCCTCACTGTG+GGG | 0.674526 | 8.3:+80263785 | MS.gene037826:CDS |
| TACCAAGGAGAGGAATGGAA+GGG | 0.683422 | 8.3:+80264347 | MS.gene037826:CDS |
| TTGTGGTATCAATCCAACAC+AGG | 0.690414 | 8.3:+80263288 | MS.gene037826:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAATTTATTTATGTTTTTT+TGG | - | chr8.3:80264089-80264108 | None:intergenic | 10.0% |
| !!! | AGTTTTTTGTCATTAAAAAT+AGG | - | chr8.3:80264306-80264325 | None:intergenic | 15.0% |
| !!! | TTGAGTTTTAATTTTAATTG+TGG | + | chr8.3:80263652-80263671 | MS.gene037826:intron | 15.0% |
| !! | ATCATGGTTATATATGTTTA+TGG | + | chr8.3:80263615-80263634 | MS.gene037826:intron | 20.0% |
| !! | GTTAAGTGATAAAAATTTAG+AGG | + | chr8.3:80264001-80264020 | MS.gene037826:intron | 20.0% |
| !! | TTAATATACACAGTATATGA+TGG | + | chr8.3:80263556-80263575 | MS.gene037826:intron | 20.0% |
| !!! | ACCATGTTATATTTTTGTTT+AGG | + | chr8.3:80264179-80264198 | MS.gene037826:intron | 20.0% |
| !!! | AGTATATGATGGATTAATAA+GGG | + | chr8.3:80263567-80263586 | MS.gene037826:intron | 20.0% |
| !!! | CATGTTATATTTTTGTTTAG+GGG | + | chr8.3:80264181-80264200 | MS.gene037826:intron | 20.0% |
| !!! | CCATGTTATATTTTTGTTTA+GGG | + | chr8.3:80264180-80264199 | MS.gene037826:intron | 20.0% |
| !!! | TAATATTTTGTATTCCATCT+AGG | - | chr8.3:80264035-80264054 | None:intergenic | 20.0% |
| ! | CCCTAAACAAAAATATAACA+TGG | - | chr8.3:80264183-80264202 | None:intergenic | 25.0% |
| ! | TTGTCATTAAAAATAGGATG+TGG | - | chr8.3:80264300-80264319 | None:intergenic | 25.0% |
| !! | AGATTAGATGACATGATTTT+GGG | - | chr8.3:80263812-80263831 | None:intergenic | 25.0% |
| !! | TAATGTTACAACTATTGACT+TGG | + | chr8.3:80263261-80263280 | MS.gene037826:CDS | 25.0% |
| !! | TAGATTAGATGACATGATTT+TGG | - | chr8.3:80263813-80263832 | None:intergenic | 25.0% |
| !!! | CAGTATATGATGGATTAATA+AGG | + | chr8.3:80263566-80263585 | MS.gene037826:intron | 25.0% |
| !!! | TTTCACAAGTTTTAATCAAG+AGG | + | chr8.3:80263507-80263526 | MS.gene037826:CDS | 25.0% |
| ACATTGAAGCCATATATTGA+TGG | + | chr8.3:80264232-80264251 | MS.gene037826:intron | 30.0% | |
| ACGAAAAAAATTACCTCATG+AGG | - | chr8.3:80263848-80263867 | None:intergenic | 30.0% | |
| ATATCAATTATCTCCTCATG+AGG | + | chr8.3:80263832-80263851 | MS.gene037826:CDS | 30.0% | |
| ATCACTTTCACCTTAACATA+TGG | - | chr8.3:80264453-80264472 | None:intergenic | 30.0% | |
| CCCAATTATTCTTCTCAAAT+GGG | + | chr8.3:80263753-80263772 | MS.gene037826:CDS | 30.0% | |
| CCCATTTGAGAAGAATAATT+GGG | - | chr8.3:80263756-80263775 | None:intergenic | 30.0% | |
| GATTCCATAAATGTCATGAA+AGG | - | chr8.3:80263349-80263368 | None:intergenic | 30.0% | |
| GTTAAAAAGTAGAAGATGCA+TGG | - | chr8.3:80263925-80263944 | None:intergenic | 30.0% | |
| TCCCAATTATTCTTCTCAAA+TGG | + | chr8.3:80263752-80263771 | MS.gene037826:CDS | 30.0% | |
| TCCCATTTGAGAAGAATAAT+TGG | - | chr8.3:80263757-80263776 | None:intergenic | 30.0% | |
| TGAACCTTTCATGACATTTA+TGG | + | chr8.3:80263342-80263361 | MS.gene037826:CDS | 30.0% | |
| TTAGAATACAGTCTTGATCA+TGG | + | chr8.3:80263599-80263618 | MS.gene037826:intron | 30.0% | |
| TTTGACACTTGGATTATCTT+TGG | + | chr8.3:80264269-80264288 | MS.gene037826:CDS | 30.0% | |
| ! | ACTGCAACAGAAATTTTGTT+AGG | - | chr8.3:80263451-80263470 | None:intergenic | 30.0% |
| ! | AGCAATATTTAGAATGTGTG+AGG | - | chr8.3:80264523-80264542 | None:intergenic | 30.0% |
| ! | CTGCAACAGAAATTTTGTTA+GGG | - | chr8.3:80263450-80263469 | None:intergenic | 30.0% |
| ! | TAGAGGTTTTTAAACCTAGA+TGG | + | chr8.3:80264018-80264037 | MS.gene037826:intron | 30.0% |
| ! | TTTTCCATAGCAACAGATAA+GGG | - | chr8.3:80263424-80263443 | None:intergenic | 30.0% |
| ! | TTTTTCCATAGCAACAGATA+AGG | - | chr8.3:80263425-80263444 | None:intergenic | 30.0% |
| !! | GTCAAGAGAAAGTATCAAAA+CGG | - | chr8.3:80264116-80264135 | None:intergenic | 30.0% |
| !! | TCAAGAGAAAGTATCAAAAC+GGG | - | chr8.3:80264115-80264134 | None:intergenic | 30.0% |
| !!! | CATCTTCTACTTTTTAACCA+AGG | + | chr8.3:80263927-80263946 | MS.gene037826:intron | 30.0% |
| AAAGAAGACCACTAATAGAG+AGG | + | chr8.3:80263956-80263975 | MS.gene037826:intron | 35.0% | |
| GAAAGAAACAAGAGTTACCA+AGG | + | chr8.3:80264332-80264351 | MS.gene037826:CDS | 35.0% | |
| GGTATCATGTTAAGCTAACT+TGG | - | chr8.3:80264162-80264181 | None:intergenic | 35.0% | |
| GTTAAGGTGAAAGTGATAAG+TGG | + | chr8.3:80264456-80264475 | MS.gene037826:CDS | 35.0% | |
| TATTAGTGGTCTTCTTTGAC+CGG | - | chr8.3:80263953-80263972 | None:intergenic | 35.0% | |
| ! | ATTCTTGTGGGTCATAGTTT+TGG | + | chr8.3:80263391-80263410 | MS.gene037826:CDS | 35.0% |
| ! | CGCTTGTTACCATCAATATA+TGG | - | chr8.3:80264244-80264263 | None:intergenic | 35.0% |
| ! | TGACAGAGGATTTTCAAATG+AGG | + | chr8.3:80264409-80264428 | MS.gene037826:CDS | 35.0% |
| ! | TGCAGTTTTTATCACTGCAT+TGG | + | chr8.3:80263465-80263484 | MS.gene037826:CDS | 35.0% |
| ! | TTGCTGATGATGAAGACTTT+AGG | - | chr8.3:80264375-80264394 | None:intergenic | 35.0% |
| !! | ACAAGACAATTTGTTGACAG+AGG | + | chr8.3:80264395-80264414 | MS.gene037826:CDS | 35.0% |
| !!! | TTCTACTTTTTAACCAAGGC+CGG | + | chr8.3:80263931-80263950 | MS.gene037826:intron | 35.0% |
| AAACAAGAGTTACCAAGGAG+AGG | + | chr8.3:80264337-80264356 | MS.gene037826:CDS | 40.0% | |
| AAGGAGAAGGTGATTCTTGT+GGG | + | chr8.3:80263379-80263398 | MS.gene037826:CDS | 40.0% | |
| ACAAGAATCACCTTCTCCTT+GGG | - | chr8.3:80263379-80263398 | None:intergenic | 40.0% | |
| AGACCACTAATAGAGAGGTT+TGG | + | chr8.3:80263961-80263980 | MS.gene037826:intron | 40.0% | |
| CACTTGGATTATCTTTGGTG+AGG | + | chr8.3:80264274-80264293 | MS.gene037826:CDS | 40.0% | |
| CTACCAAACCTCTCTATTAG+TGG | - | chr8.3:80263967-80263986 | None:intergenic | 40.0% | |
| GAGTACTCGTCCATATGTTA+AGG | + | chr8.3:80264440-80264459 | MS.gene037826:CDS | 40.0% | |
| GATAAGTGGTTCAGATCACA+TGG | + | chr8.3:80264470-80264489 | MS.gene037826:CDS | 40.0% | |
| GATACCCTTATCTGTTGCTA+TGG | + | chr8.3:80263417-80263436 | MS.gene037826:CDS | 40.0% | |
| TGAATCTCTTGAACCTGTGT+TGG | - | chr8.3:80263304-80263323 | None:intergenic | 40.0% | |
| TTGTGGTATCAATCCAACAC+AGG | + | chr8.3:80263288-80263307 | MS.gene037826:CDS | 40.0% | |
| ! | ATATTGATGGTAACAAGCGC+AGG | + | chr8.3:80264245-80264264 | MS.gene037826:intron | 40.0% |
| !! | GCTAACTTGGTGTACACATT+TGG | - | chr8.3:80264149-80264168 | None:intergenic | 40.0% |
| !!! | ATGTGTGAGGTGAGCTTTTT+TGG | - | chr8.3:80264510-80264529 | None:intergenic | 40.0% |
| !!! | TGAGGTGAGCTTTTTTGGTT+TGG | - | chr8.3:80264505-80264524 | None:intergenic | 40.0% |
| !!! | TTGTGGGTCATAGTTTTGGA+GGG | + | chr8.3:80263395-80263414 | MS.gene037826:CDS | 40.0% |
| AGAGTTACCAAGGAGAGGAA+TGG | + | chr8.3:80264342-80264361 | MS.gene037826:CDS | 45.0% | |
| CAAGGAGAAGGTGATTCTTG+TGG | + | chr8.3:80263378-80263397 | MS.gene037826:CDS | 45.0% | |
| CACAAGAATCACCTTCTCCT+TGG | - | chr8.3:80263380-80263399 | None:intergenic | 45.0% | |
| CTGTCGAGTGGAATTCTATG+CGG | - | chr8.3:80263726-80263745 | None:intergenic | 45.0% | |
| GCATAGAATTCCACTCGACA+GGG | + | chr8.3:80263725-80263744 | MS.gene037826:intron | 45.0% | |
| TACCAAGGAGAGGAATGGAA+GGG | + | chr8.3:80264347-80264366 | MS.gene037826:CDS | 45.0% | |
| TATGGAATCTCTTCGTCCCA+AGG | + | chr8.3:80263360-80263379 | MS.gene037826:CDS | 45.0% | |
| TTACCAAGGAGAGGAATGGA+AGG | + | chr8.3:80264346-80264365 | MS.gene037826:CDS | 45.0% | |
| !! | ACTATTGACTTGGCTGCTTG+TGG | + | chr8.3:80263271-80263290 | MS.gene037826:CDS | 45.0% |
| !!! | CTTGTGGGTCATAGTTTTGG+AGG | + | chr8.3:80263394-80263413 | MS.gene037826:CDS | 45.0% |
| ATCTCTTCGTCCCAAGGAGA+AGG | + | chr8.3:80263366-80263385 | MS.gene037826:CDS | 50.0% | |
| CAAGCGCAGGATTTGACACT+TGG | + | chr8.3:80264258-80264277 | MS.gene037826:intron | 50.0% | |
| CGCATAGAATTCCACTCGAC+AGG | + | chr8.3:80263724-80263743 | MS.gene037826:intron | 50.0% | |
| ATCCTCCAACTGCCTCACTG+TGG | + | chr8.3:80263783-80263802 | MS.gene037826:CDS | 55.0% | |
| CACCCTTCCATTCCTCTCCT+TGG | - | chr8.3:80264352-80264371 | None:intergenic | 55.0% | |
| TCCTCCAACTGCCTCACTGT+GGG | + | chr8.3:80263784-80263803 | MS.gene037826:CDS | 55.0% | |
| TGGTCTTCTTTGACCGGCCT+TGG | - | chr8.3:80263947-80263966 | None:intergenic | 55.0% | |
| TTGGGATTCTCCCTGTCGAG+TGG | - | chr8.3:80263738-80263757 | None:intergenic | 55.0% | |
| !! | GATTTTGGGTCCCCACAGTG+AGG | - | chr8.3:80263798-80263817 | None:intergenic | 55.0% |
| CCTCCAACTGCCTCACTGTG+GGG | + | chr8.3:80263785-80263804 | MS.gene037826:CDS | 60.0% | |
| CCCCACAGTGAGGCAGTTGG+AGG | - | chr8.3:80263788-80263807 | None:intergenic | 65.0% | |
| GGTCCCCACAGTGAGGCAGT+TGG | - | chr8.3:80263791-80263810 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 80263241 | 80264554 | 80263241 | ID=MS.gene037826 |
| chr8.3 | mRNA | 80263241 | 80264554 | 80263241 | ID=MS.gene037826.t1;Parent=MS.gene037826 |
| chr8.3 | exon | 80263241 | 80263528 | 80263241 | ID=MS.gene037826.t1.exon1;Parent=MS.gene037826.t1 |
| chr8.3 | CDS | 80263241 | 80263528 | 80263241 | ID=cds.MS.gene037826.t1;Parent=MS.gene037826.t1 |
| chr8.3 | exon | 80263731 | 80263853 | 80263731 | ID=MS.gene037826.t1.exon2;Parent=MS.gene037826.t1 |
| chr8.3 | CDS | 80263731 | 80263853 | 80263731 | ID=cds.MS.gene037826.t1;Parent=MS.gene037826.t1 |
| chr8.3 | exon | 80264267 | 80264554 | 80264267 | ID=MS.gene037826.t1.exon3;Parent=MS.gene037826.t1 |
| chr8.3 | CDS | 80264267 | 80264554 | 80264267 | ID=cds.MS.gene037826.t1;Parent=MS.gene037826.t1 |
| Gene Sequence |
| Protein sequence |
