Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037828.t1 | RHN38735.1 | 92.8 | 235 | 16 | 1 | 1 | 235 | 48 | 281 | 3.50E-117 | 431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037828.t1 | Q6RYA0 | 43.3 | 238 | 128 | 5 | 1 | 235 | 26 | 259 | 9.2e-42 | 171.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037828.t1 | A0A072TM99 | 92.8 | 235 | 16 | 1 | 1 | 235 | 48 | 281 | 2.5e-117 | 431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037828 | MS.gene041151 | PPI |
| MS.gene037828 | MS.gene44962 | PPI |
| MS.gene28543 | MS.gene037828 | PPI |
| MS.gene037828 | MS.gene011884 | PPI |
| MS.gene037828 | MS.gene047689 | PPI |
| MS.gene037828 | MS.gene010412 | PPI |
| MS.gene87350 | MS.gene037828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037828.t1 | MTR_8g008505 | 92.766 | 235 | 16 | 1 | 1 | 235 | 48 | 281 | 3.27e-160 | 444 |
| MS.gene037828.t1 | MTR_8g008500 | 85.294 | 238 | 32 | 1 | 1 | 235 | 47 | 284 | 2.87e-148 | 414 |
| MS.gene037828.t1 | MTR_8g008660 | 77.447 | 235 | 50 | 2 | 1 | 235 | 47 | 278 | 3.06e-129 | 366 |
| MS.gene037828.t1 | MTR_3g464040 | 76.596 | 235 | 52 | 2 | 1 | 235 | 39 | 270 | 4.59e-127 | 360 |
| MS.gene037828.t1 | MTR_8g007675 | 67.373 | 236 | 75 | 2 | 1 | 235 | 52 | 286 | 1.77e-111 | 322 |
| MS.gene037828.t1 | MTR_8g007670 | 54.167 | 240 | 99 | 4 | 2 | 235 | 28 | 262 | 4.72e-87 | 259 |
| MS.gene037828.t1 | MTR_5g018320 | 50.211 | 237 | 114 | 4 | 1 | 235 | 25 | 259 | 1.49e-75 | 229 |
| MS.gene037828.t1 | MTR_5g018300 | 49.367 | 237 | 116 | 4 | 1 | 235 | 28 | 262 | 1.90e-74 | 226 |
| MS.gene037828.t1 | MTR_5g018280 | 48.536 | 239 | 114 | 6 | 1 | 235 | 28 | 261 | 1.07e-71 | 219 |
| MS.gene037828.t1 | MTR_8g007670 | 47.660 | 235 | 78 | 3 | 2 | 235 | 28 | 218 | 2.05e-70 | 215 |
| MS.gene037828.t1 | MTR_8g079120 | 39.076 | 238 | 132 | 6 | 2 | 235 | 32 | 260 | 1.93e-48 | 160 |
| MS.gene037828.t1 | MTR_5g018365 | 39.407 | 236 | 134 | 6 | 2 | 235 | 33 | 261 | 9.53e-47 | 156 |
| MS.gene037828.t1 | MTR_5g018350 | 36.709 | 237 | 139 | 5 | 2 | 235 | 28 | 256 | 1.49e-42 | 145 |
| MS.gene037828.t1 | MTR_5g008130 | 76.623 | 77 | 18 | 0 | 159 | 235 | 4 | 80 | 1.41e-36 | 124 |
| MS.gene037828.t1 | MTR_5g068100 | 34.855 | 241 | 141 | 6 | 1 | 235 | 50 | 280 | 4.02e-35 | 126 |
| MS.gene037828.t1 | MTR_7g015220 | 34.615 | 234 | 145 | 4 | 1 | 232 | 144 | 371 | 2.07e-33 | 124 |
| MS.gene037828.t1 | MTR_3g093730 | 33.333 | 237 | 143 | 5 | 1 | 232 | 56 | 282 | 9.62e-31 | 115 |
| MS.gene037828.t1 | MTR_3g005410 | 29.661 | 236 | 157 | 4 | 1 | 233 | 114 | 343 | 1.18e-27 | 108 |
| MS.gene037828.t1 | MTR_8g079120 | 41.259 | 143 | 74 | 4 | 2 | 140 | 74 | 210 | 4.53e-27 | 103 |
| MS.gene037828.t1 | MTR_3g093730 | 30.544 | 239 | 102 | 7 | 1 | 232 | 56 | 237 | 1.17e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037828.t1 | AT3G50440 | 40.084 | 237 | 135 | 4 | 2 | 235 | 42 | 274 | 4.49e-53 | 172 |
| MS.gene037828.t1 | AT2G23600 | 39.916 | 238 | 136 | 4 | 1 | 235 | 29 | 262 | 6.63e-50 | 164 |
| MS.gene037828.t1 | AT2G23600 | 39.916 | 238 | 136 | 4 | 1 | 235 | 44 | 277 | 1.09e-49 | 164 |
| MS.gene037828.t1 | AT2G23610 | 40.506 | 237 | 134 | 5 | 2 | 235 | 30 | 262 | 2.02e-49 | 163 |
| MS.gene037828.t1 | AT2G23620 | 40.083 | 242 | 130 | 5 | 1 | 235 | 29 | 262 | 2.88e-49 | 162 |
| MS.gene037828.t1 | AT2G23590 | 38.983 | 236 | 132 | 8 | 1 | 235 | 47 | 271 | 3.63e-46 | 155 |
| MS.gene037828.t1 | AT2G23580 | 39.918 | 243 | 128 | 9 | 2 | 235 | 29 | 262 | 5.93e-46 | 154 |
| MS.gene037828.t1 | AT2G23550 | 37.860 | 243 | 133 | 8 | 2 | 235 | 29 | 262 | 5.37e-42 | 144 |
| MS.gene037828.t1 | AT2G23550 | 37.860 | 243 | 133 | 8 | 2 | 235 | 36 | 269 | 5.90e-42 | 144 |
| MS.gene037828.t1 | AT4G37150 | 37.849 | 251 | 122 | 8 | 1 | 235 | 23 | 255 | 1.22e-41 | 142 |
| MS.gene037828.t1 | AT2G23560 | 36.170 | 235 | 145 | 4 | 2 | 235 | 29 | 259 | 2.06e-39 | 137 |
| MS.gene037828.t1 | AT5G10300 | 35.593 | 236 | 147 | 4 | 1 | 235 | 26 | 257 | 2.91e-36 | 129 |
| MS.gene037828.t1 | AT2G23610 | 35.043 | 234 | 106 | 4 | 2 | 235 | 30 | 217 | 3.30e-36 | 127 |
| MS.gene037828.t1 | AT1G33990 | 33.191 | 235 | 148 | 4 | 2 | 233 | 118 | 346 | 3.61e-36 | 130 |
| MS.gene037828.t1 | AT4G09900 | 32.766 | 235 | 149 | 5 | 2 | 233 | 119 | 347 | 1.31e-34 | 127 |
| MS.gene037828.t1 | AT1G26360 | 35.021 | 237 | 142 | 6 | 1 | 233 | 209 | 437 | 2.94e-34 | 127 |
| MS.gene037828.t1 | AT3G29770 | 37.238 | 239 | 134 | 7 | 1 | 233 | 158 | 386 | 5.75e-33 | 123 |
| MS.gene037828.t1 | AT1G69240 | 32.068 | 237 | 151 | 5 | 1 | 233 | 207 | 437 | 6.13e-33 | 124 |
| MS.gene037828.t1 | AT3G10870 | 32.479 | 234 | 153 | 4 | 1 | 232 | 40 | 270 | 5.47e-32 | 118 |
| MS.gene037828.t1 | AT5G58310 | 30.769 | 247 | 141 | 7 | 2 | 232 | 26 | 258 | 8.21e-31 | 114 |
| MS.gene037828.t1 | AT2G23570 | 39.011 | 182 | 101 | 5 | 59 | 235 | 2 | 178 | 7.38e-30 | 110 |
| MS.gene037828.t1 | AT2G23550 | 33.058 | 242 | 117 | 7 | 2 | 235 | 29 | 233 | 1.87e-29 | 110 |
| MS.gene037828.t1 | AT4G16690 | 31.466 | 232 | 149 | 5 | 1 | 230 | 32 | 255 | 2.82e-29 | 110 |
| MS.gene037828.t1 | AT2G23600 | 40.559 | 143 | 81 | 2 | 1 | 140 | 44 | 185 | 1.94e-27 | 103 |
| MS.gene037828.t1 | AT2G23580 | 40.000 | 145 | 74 | 6 | 2 | 138 | 29 | 168 | 1.72e-22 | 91.7 |
| MS.gene037828.t1 | AT2G23550 | 38.621 | 145 | 76 | 5 | 2 | 138 | 36 | 175 | 9.40e-21 | 87.0 |
| MS.gene037828.t1 | AT5G10300 | 37.762 | 143 | 87 | 2 | 1 | 142 | 26 | 167 | 1.40e-19 | 84.0 |
| MS.gene037828.t1 | AT4G37140 | 45.238 | 84 | 45 | 1 | 1 | 84 | 23 | 105 | 1.53e-19 | 82.0 |
| MS.gene037828.t1 | AT4G37140 | 42.254 | 71 | 40 | 1 | 1 | 71 | 23 | 92 | 1.99e-14 | 67.4 |
Find 48 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTTTGATATCATTTA+TGG | 0.078023 | 8.3:+80273532 | MS.gene037828:CDS |
| CCACAGTTATTGTTCTTAAA+TGG | 0.151463 | 8.3:+80274262 | MS.gene037828:CDS |
| GAATTACAGTTGTGAAATTA+AGG | 0.203942 | 8.3:-80273691 | None:intergenic |
| CCTCCAACTGCCTTGTTGTT+TGG | 0.223716 | 8.3:+80274295 | MS.gene037828:CDS |
| ATTCTTGTGGGTCATAGTTT+TGG | 0.257233 | 8.3:+80273581 | MS.gene037828:CDS |
| TAATGTTAGCACAATTGATT+TGG | 0.307926 | 8.3:+80273448 | MS.gene037828:CDS |
| TGCTGAGGTGAAAGTGATAA+AGG | 0.318232 | 8.3:+80275439 | MS.gene037828:CDS |
| TTGCTGATAATGAAGACTTT+TGG | 0.340901 | 8.3:-80275356 | None:intergenic |
| TGAATCTCTTGGACCTGTAT+TGG | 0.346355 | 8.3:-80273488 | None:intergenic |
| TACTCTTCCATTCCTTTGCT+TGG | 0.354752 | 8.3:-80275333 | None:intergenic |
| CAGATGAGATGCCAAGAGTT+TGG | 0.357433 | 8.3:-80274320 | None:intergenic |
| ACAAGAATCACCTTCTCCTT+TGG | 0.362247 | 8.3:-80273566 | None:intergenic |
| ACAATTGATTTGGCTGCTTC+AGG | 0.377565 | 8.3:+80273458 | MS.gene037828:CDS |
| AATTACAGTTGTGAAATTAA+GGG | 0.385824 | 8.3:-80273690 | None:intergenic |
| AAGGCAGTTGGAGGACTGTT+TGG | 0.392141 | 8.3:-80274286 | None:intergenic |
| ATCACTTTCACCTCAGCATA+AGG | 0.395471 | 8.3:-80275434 | None:intergenic |
| AAATATTTGAATGAATCTCT+TGG | 0.405238 | 8.3:-80273499 | None:intergenic |
| TTTGACACTTGGATCATCAT+TGG | 0.411517 | 8.3:+80275253 | MS.gene037828:CDS |
| GTTGTTTGGATCCAAACTCT+TGG | 0.434228 | 8.3:+80274309 | MS.gene037828:CDS |
| GATAAAGGGTTCAGATCATA+TGG | 0.444154 | 8.3:+80275454 | MS.gene037828:CDS |
| CATGCGTAGGATTTGACACT+TGG | 0.451930 | 8.3:+80275242 | MS.gene037828:intron |
| AGAATCACCTTCTCCTTTGG+AGG | 0.473413 | 8.3:-80273563 | None:intergenic |
| GATACCCTTATCTGTTGCTA+TGG | 0.489986 | 8.3:+80273607 | MS.gene037828:CDS |
| GCTGAGGTGAAAGTGATAAA+GGG | 0.493443 | 8.3:+80275440 | MS.gene037828:CDS |
| AAGGAGAAGGTGATTCTTGT+GGG | 0.501737 | 8.3:+80273569 | MS.gene037828:CDS |
| TTAGAGAGGATATGCAGTTA+TGG | 0.507529 | 8.3:+80275393 | MS.gene037828:CDS |
| TTATGGATAATTGAGAGAAC+TGG | 0.510143 | 8.3:+80275410 | MS.gene037828:CDS |
| GCAACTATGCTTAAATCAGC+TGG | 0.513884 | 8.3:+80273422 | None:intergenic |
| TTCAGGTATCAATCCAATAC+AGG | 0.517321 | 8.3:+80273475 | MS.gene037828:CDS |
| TATGGATTCTCTTCCTCCAA+AGG | 0.520377 | 8.3:+80273550 | MS.gene037828:CDS |
| GATCCAAACAACAAGGCAGT+TGG | 0.527636 | 8.3:-80274298 | None:intergenic |
| TTGTCATTAAAGATAGGATG+TGG | 0.530621 | 8.3:-80275281 | None:intergenic |
| AAAGGAGAAGGTGATTCTTG+TGG | 0.544745 | 8.3:+80273568 | MS.gene037828:CDS |
| TTTCACAACTGTAATTCAAG+AGG | 0.547572 | 8.3:+80273697 | MS.gene037828:CDS |
| GTATCAATTATCGCCTAATG+AGG | 0.552044 | 8.3:+80274342 | MS.gene037828:CDS |
| TTTAAGAACAATAACTGTGG+TGG | 0.553701 | 8.3:-80274259 | None:intergenic |
| TTCTCTTCCTCCAAAGGAGA+AGG | 0.557078 | 8.3:+80273556 | MS.gene037828:CDS |
| AGAGTTACCAAGCAAAGGAA+TGG | 0.559662 | 8.3:+80275326 | MS.gene037828:CDS |
| AAAGTCTTCATTATCAGCAA+AGG | 0.566673 | 8.3:+80275359 | MS.gene037828:CDS |
| CCAAACAACAAGGCAGTTGG+AGG | 0.578597 | 8.3:-80274295 | None:intergenic |
| AAACGAGAGTTACCAAGCAA+AGG | 0.598148 | 8.3:+80275321 | MS.gene037828:CDS |
| CACTTGGATCATCATTGGTG+AGG | 0.609021 | 8.3:+80275258 | MS.gene037828:CDS |
| GAATCCATAAATGATATCAA+AGG | 0.609540 | 8.3:-80273536 | None:intergenic |
| AGGAGACAATATCATTAGAG+AGG | 0.640958 | 8.3:+80275379 | MS.gene037828:CDS |
| GAGTTTGGATCCAAACAACA+AGG | 0.680669 | 8.3:-80274305 | None:intergenic |
| AGCAATCTTTAGTATGTGAG+AGG | 0.702231 | 8.3:-80275504 | None:intergenic |
| CCATTTAAGAACAATAACTG+TGG | 0.713087 | 8.3:-80274262 | None:intergenic |
| GAGAACTGGTCCTTATGCTG+AGG | 0.742670 | 8.3:+80275424 | MS.gene037828:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr8.3:80275195-80275176 | None:intergenic | 0.0% |
| !! | TATTTATATTAATAAAAATT+AGG | + | chr8.3:80273917-80273936 | MS.gene037828:intron | 0.0% |
| !! | AAAATAATAATCAAATTCAA+AGG | - | chr8.3:80273959-80273978 | None:intergenic | 10.0% |
| !! | AAAATTCATACATATATATA+TGG | + | chr8.3:80275029-80275048 | MS.gene037828:intron | 10.0% |
| !! | AAATTCATACATATATATAT+GGG | + | chr8.3:80275030-80275049 | MS.gene037828:intron | 10.0% |
| !! | AATATAAATATATATAACCA+TGG | - | chr8.3:80273907-80273926 | None:intergenic | 10.0% |
| !! | AATGCAAAATTAAAATTATT+AGG | + | chr8.3:80274113-80274132 | MS.gene037828:intron | 10.0% |
| !! | ATGCAAAATTAAAATTATTA+GGG | + | chr8.3:80274114-80274133 | MS.gene037828:intron | 10.0% |
| !!! | TTATAATTTGAAGTTTAATT+TGG | - | chr8.3:80274662-80274681 | None:intergenic | 10.0% |
| !! | ATTAAACTTCAAATTATAAG+AGG | + | chr8.3:80274663-80274682 | MS.gene037828:intron | 15.0% |
| !! | CAAATAAGTTTATAGATTAT+TGG | - | chr8.3:80274717-80274736 | None:intergenic | 15.0% |
| !! | GTAAGAAAACAAAATTATAA+AGG | - | chr8.3:80273991-80274010 | None:intergenic | 15.0% |
| !!! | AAAGGAATAAATTTTAATTG+TGG | + | chr8.3:80274176-80274195 | MS.gene037828:intron | 15.0% |
| !!! | GCATTTTAATTTCTAATAAA+AGG | - | chr8.3:80274098-80274117 | None:intergenic | 15.0% |
| !!! | TGATTGAAAATTTGAAATAA+AGG | + | chr8.3:80274381-80274400 | MS.gene037828:intron | 15.0% |
| !!! | TGTTGTTGTTAATTTTTAAA+GGG | + | chr8.3:80274505-80274524 | MS.gene037828:intron | 15.0% |
| !!! | TTGTTGTTGTTAATTTTTAA+AGG | + | chr8.3:80274504-80274523 | MS.gene037828:intron | 15.0% |
| !! | AAATATTTGAATGAATCTCT+TGG | - | chr8.3:80273502-80273521 | None:intergenic | 20.0% |
| !! | AATTACAGTTGTGAAATTAA+GGG | - | chr8.3:80273693-80273712 | None:intergenic | 20.0% |
| !! | ATCAAGAGAAAATATCATAA+TGG | - | chr8.3:80274772-80274791 | None:intergenic | 20.0% |
| !! | TCAAGAGAAAATATCATAAT+GGG | - | chr8.3:80274771-80274790 | None:intergenic | 20.0% |
| !! | TCTATTATTCAAGAAAAAGA+GGG | - | chr8.3:80273814-80273833 | None:intergenic | 20.0% |
| !! | TTACAATCAATATATAGCTT+CGG | - | chr8.3:80275222-80275241 | None:intergenic | 20.0% |
| !! | TTCTATTATTCAAGAAAAAG+AGG | - | chr8.3:80273815-80273834 | None:intergenic | 20.0% |
| !!! | AAATATGTGATGGATTAATA+AGG | + | chr8.3:80273785-80273804 | MS.gene037828:intron | 20.0% |
| !!! | AGTTTTTTGTCATTAAAGAT+AGG | - | chr8.3:80275290-80275309 | None:intergenic | 20.0% |
| ! | AATAGAATAAAGTCTTGATC+TGG | + | chr8.3:80273828-80273847 | MS.gene037828:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | - | chr8.3:80274924-80274943 | None:intergenic | 25.0% |
| ! | ATATGTTAAAGTACGTAACT+TGG | - | chr8.3:80274818-80274837 | None:intergenic | 25.0% |
| ! | CCACATTTATATATTAGAAG+GGG | + | chr8.3:80273740-80273759 | MS.gene037828:intron | 25.0% |
| ! | CCCACATTTATATATTAGAA+GGG | + | chr8.3:80273739-80273758 | MS.gene037828:intron | 25.0% |
| ! | CCCTTCTAATATATAAATGT+GGG | - | chr8.3:80273742-80273761 | None:intergenic | 25.0% |
| ! | GAATCCATAAATGATATCAA+AGG | - | chr8.3:80273539-80273558 | None:intergenic | 25.0% |
| ! | GAATTACAGTTGTGAAATTA+AGG | - | chr8.3:80273694-80273713 | None:intergenic | 25.0% |
| ! | GATTACTTCAACAAATCTAA+AGG | - | chr8.3:80274553-80274572 | None:intergenic | 25.0% |
| ! | GCAAAGTTATAACTAAAAAG+TGG | - | chr8.3:80275116-80275135 | None:intergenic | 25.0% |
| ! | TAATGTTAGCACAATTGATT+TGG | + | chr8.3:80273448-80273467 | MS.gene037828:CDS | 25.0% |
| ! | TCCCACATTTATATATTAGA+AGG | + | chr8.3:80273738-80273757 | MS.gene037828:intron | 25.0% |
| ! | TGAACCTTTGATATCATTTA+TGG | + | chr8.3:80273532-80273551 | MS.gene037828:CDS | 25.0% |
| ! | TTAAGACTCAAAATATGTGA+TGG | + | chr8.3:80273775-80273794 | MS.gene037828:intron | 25.0% |
| ! | TTCATCAACTCAGAATTTAA+AGG | + | chr8.3:80274158-80274177 | MS.gene037828:intron | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | + | chr8.3:80274918-80274937 | MS.gene037828:intron | 25.0% |
| !! | ATATTTTCTCTTGATATCAC+TGG | + | chr8.3:80274777-80274796 | MS.gene037828:intron | 25.0% |
| !! | TTAAAGGGTTATTTCAAAGT+TGG | + | chr8.3:80274520-80274539 | MS.gene037828:intron | 25.0% |
| !! | TTAGAAGACACATTTTATGA+AGG | + | chr8.3:80274856-80274875 | MS.gene037828:intron | 25.0% |
| !!! | TATATATTAGAAGGGGTATT+CGG | + | chr8.3:80273747-80273766 | MS.gene037828:intron | 25.0% |
| AAAGTCTTCATTATCAGCAA+AGG | + | chr8.3:80275359-80275378 | MS.gene037828:CDS | 30.0% | |
| ATGGTTACTAACATCTGAAA+TGG | - | chr8.3:80273888-80273907 | None:intergenic | 30.0% | |
| ATTTCAGATGTTAGTAACCA+TGG | + | chr8.3:80273887-80273906 | MS.gene037828:intron | 30.0% | |
| CCACAGTTATTGTTCTTAAA+TGG | + | chr8.3:80274262-80274281 | MS.gene037828:CDS | 30.0% | |
| CCATTTAAGAACAATAACTG+TGG | - | chr8.3:80274265-80274284 | None:intergenic | 30.0% | |
| CCCCTTCTAATATATAAATG+TGG | - | chr8.3:80273743-80273762 | None:intergenic | 30.0% | |
| GCAAAAAAGTTTACCTCATT+AGG | - | chr8.3:80274358-80274377 | None:intergenic | 30.0% | |
| TCTTAACCTCCTCATTTATA+GGG | - | chr8.3:80274694-80274713 | None:intergenic | 30.0% | |
| TTATGGATAATTGAGAGAAC+TGG | + | chr8.3:80275410-80275429 | MS.gene037828:CDS | 30.0% | |
| TTGCTAAAAGACACTTTCAT+CGG | + | chr8.3:80274995-80275014 | MS.gene037828:intron | 30.0% | |
| TTGTCATTAAAGATAGGATG+TGG | - | chr8.3:80275284-80275303 | None:intergenic | 30.0% | |
| TTTAAGAACAATAACTGTGG+TGG | - | chr8.3:80274262-80274281 | None:intergenic | 30.0% | |
| TTTCACAACTGTAATTCAAG+AGG | + | chr8.3:80273697-80273716 | MS.gene037828:CDS | 30.0% | |
| ! | ACTGCAACAGAAATTTTCTT+AGG | - | chr8.3:80273641-80273660 | None:intergenic | 30.0% |
| ! | ATATTGATTGTAACATGCGT+AGG | + | chr8.3:80275229-80275248 | MS.gene037828:intron | 30.0% |
| ! | CTAGAAGACAGTTTTTATGA+AGG | - | chr8.3:80275148-80275167 | None:intergenic | 30.0% |
| ! | CTGCAACAGAAATTTTCTTA+GGG | - | chr8.3:80273640-80273659 | None:intergenic | 30.0% |
| ! | TTTTCCATAGCAACAGATAA+GGG | - | chr8.3:80273614-80273633 | None:intergenic | 30.0% |
| !! | TTGCTGATAATGAAGACTTT+TGG | - | chr8.3:80275359-80275378 | None:intergenic | 30.0% |
| AAAGTGAAAATCACACCTTG+AGG | + | chr8.3:80274966-80274985 | MS.gene037828:intron | 35.0% | |
| AAAGTGGAAATCACACCTTA+AGG | - | chr8.3:80275100-80275119 | None:intergenic | 35.0% | |
| AGAATAAAGTCTTGATCTGG+TGG | + | chr8.3:80273831-80273850 | MS.gene037828:intron | 35.0% | |
| AGCAATCTTTAGTATGTGAG+AGG | - | chr8.3:80275507-80275526 | None:intergenic | 35.0% | |
| AGGAGACAATATCATTAGAG+AGG | + | chr8.3:80275379-80275398 | MS.gene037828:CDS | 35.0% | |
| AGTTCTTCTCTCATTCTATG+AGG | - | chr8.3:80274230-80274249 | None:intergenic | 35.0% | |
| GATAAAGGGTTCAGATCATA+TGG | + | chr8.3:80275454-80275473 | MS.gene037828:CDS | 35.0% | |
| GTATCAATTATCGCCTAATG+AGG | + | chr8.3:80274342-80274361 | MS.gene037828:CDS | 35.0% | |
| GTCTTAACCTCCTCATTTAT+AGG | - | chr8.3:80274695-80274714 | None:intergenic | 35.0% | |
| TTAGAGAGGATATGCAGTTA+TGG | + | chr8.3:80275393-80275412 | MS.gene037828:CDS | 35.0% | |
| TTCAGGTATCAATCCAATAC+AGG | + | chr8.3:80273475-80273494 | MS.gene037828:CDS | 35.0% | |
| TTTGACACTTGGATCATCAT+TGG | + | chr8.3:80275253-80275272 | MS.gene037828:CDS | 35.0% | |
| ! | ATTCTTGTGGGTCATAGTTT+TGG | + | chr8.3:80273581-80273600 | MS.gene037828:CDS | 35.0% |
| ! | CTTTTCCATAGCAACAGATA+AGG | - | chr8.3:80273615-80273634 | None:intergenic | 35.0% |
| !! | CGTAACTTGGTGTATACATT+TGG | - | chr8.3:80274805-80274824 | None:intergenic | 35.0% |
| !!! | AGAGGTGAGTTTTTTAGGTT+TGG | - | chr8.3:80275489-80275508 | None:intergenic | 35.0% |
| !!! | ATGTGAGAGGTGAGTTTTTT+AGG | - | chr8.3:80275494-80275513 | None:intergenic | 35.0% |
| AAACGAGAGTTACCAAGCAA+AGG | + | chr8.3:80275321-80275340 | MS.gene037828:CDS | 40.0% | |
| AAAGGAGAAGGTGATTCTTG+TGG | + | chr8.3:80273568-80273587 | MS.gene037828:CDS | 40.0% | |
| AAGGAGAAGGTGATTCTTGT+GGG | + | chr8.3:80273569-80273588 | MS.gene037828:CDS | 40.0% | |
| ACAAGAATCACCTTCTCCTT+TGG | - | chr8.3:80273569-80273588 | None:intergenic | 40.0% | |
| AGAGTTACCAAGCAAAGGAA+TGG | + | chr8.3:80275326-80275345 | MS.gene037828:CDS | 40.0% | |
| ATCACTTTCACCTCAGCATA+AGG | - | chr8.3:80275437-80275456 | None:intergenic | 40.0% | |
| CTAAAAGACACCTTCATGGA+TGG | - | chr8.3:80275068-80275087 | None:intergenic | 40.0% | |
| CTAAAAGACACTTTCATCGG+TGG | + | chr8.3:80274998-80275017 | MS.gene037828:intron | 40.0% | |
| GAAATCACACCTTAAGGTGT+GGG | - | chr8.3:80275094-80275113 | None:intergenic | 40.0% | |
| GACTTTCCCTATAAATGAGG+AGG | + | chr8.3:80274685-80274704 | MS.gene037828:intron | 40.0% | |
| GAGGACTTTCCCTATAAATG+AGG | + | chr8.3:80274682-80274701 | MS.gene037828:intron | 40.0% | |
| GAGTTTGGATCCAAACAACA+AGG | - | chr8.3:80274308-80274327 | None:intergenic | 40.0% | |
| GATACCCTTATCTGTTGCTA+TGG | + | chr8.3:80273607-80273626 | MS.gene037828:CDS | 40.0% | |
| GCTGAGGTGAAAGTGATAAA+GGG | + | chr8.3:80275440-80275459 | MS.gene037828:CDS | 40.0% | |
| GTTGCTAAAAGACACCTTCA+TGG | - | chr8.3:80275072-80275091 | None:intergenic | 40.0% | |
| GTTGTTTGGATCCAAACTCT+TGG | + | chr8.3:80274309-80274328 | MS.gene037828:CDS | 40.0% | |
| TACTCTTCCATTCCTTTGCT+TGG | - | chr8.3:80275336-80275355 | None:intergenic | 40.0% | |
| TATGGATTCTCTTCCTCCAA+AGG | + | chr8.3:80273550-80273569 | MS.gene037828:CDS | 40.0% | |
| TGAATCTCTTGGACCTGTAT+TGG | - | chr8.3:80273491-80273510 | None:intergenic | 40.0% | |
| TGCTGAGGTGAAAGTGATAA+AGG | + | chr8.3:80275439-80275458 | MS.gene037828:CDS | 40.0% | |
| ! | TTTTAGCAACCCACACCTTA+AGG | + | chr8.3:80275082-80275101 | MS.gene037828:intron | 40.0% |
| ! | TTTTAGCAATCCACACCTCA+AGG | - | chr8.3:80274984-80275003 | None:intergenic | 40.0% |
| !! | ACAATTGATTTGGCTGCTTC+AGG | + | chr8.3:80273458-80273477 | MS.gene037828:CDS | 40.0% |
| !!! | TTGTGGGTCATAGTTTTGGA+GGG | + | chr8.3:80273585-80273604 | MS.gene037828:CDS | 40.0% |
| AGAATCACCTTCTCCTTTGG+AGG | - | chr8.3:80273566-80273585 | None:intergenic | 45.0% | |
| CACTTGGATCATCATTGGTG+AGG | + | chr8.3:80275258-80275277 | MS.gene037828:CDS | 45.0% | |
| CAGATGAGATGCCAAGAGTT+TGG | - | chr8.3:80274323-80274342 | None:intergenic | 45.0% | |
| CATGCGTAGGATTTGACACT+TGG | + | chr8.3:80275242-80275261 | MS.gene037828:intron | 45.0% | |
| GAAAATCACACCTTGAGGTG+TGG | + | chr8.3:80274971-80274990 | MS.gene037828:intron | 45.0% | |
| GATCCAAACAACAAGGCAGT+TGG | - | chr8.3:80274301-80274320 | None:intergenic | 45.0% | |
| GGAAATCACACCTTAAGGTG+TGG | - | chr8.3:80275095-80275114 | None:intergenic | 45.0% | |
| TTCTCTTCCTCCAAAGGAGA+AGG | + | chr8.3:80273556-80273575 | MS.gene037828:CDS | 45.0% | |
| TTGCTAGAAGCCATCCATGA+AGG | + | chr8.3:80275055-80275074 | MS.gene037828:intron | 45.0% | |
| !!! | CTTGTGGGTCATAGTTTTGG+AGG | + | chr8.3:80273584-80273603 | MS.gene037828:CDS | 45.0% |
| !! | TTTAACATATTATATATATA+TGG | + | chr8.3:80274828-80274847 | MS.gene037828:intron | 5.0% |
| AAGGCAGTTGGAGGACTGTT+TGG | - | chr8.3:80274289-80274308 | None:intergenic | 50.0% | |
| CCAAACAACAAGGCAGTTGG+AGG | - | chr8.3:80274298-80274317 | None:intergenic | 50.0% | |
| GAGAACTGGTCCTTATGCTG+AGG | + | chr8.3:80275424-80275443 | MS.gene037828:CDS | 50.0% | |
| !! | CCTCCAACTGCCTTGTTGTT+TGG | + | chr8.3:80274295-80274314 | MS.gene037828:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 80273428 | 80275538 | 80273428 | ID=MS.gene037828 |
| chr8.3 | mRNA | 80273428 | 80275538 | 80273428 | ID=MS.gene037828.t1;Parent=MS.gene037828 |
| chr8.3 | exon | 80273428 | 80273718 | 80273428 | ID=MS.gene037828.t1.exon1;Parent=MS.gene037828.t1 |
| chr8.3 | CDS | 80273428 | 80273718 | 80273428 | ID=cds.MS.gene037828.t1;Parent=MS.gene037828.t1 |
| chr8.3 | exon | 80274235 | 80274363 | 80274235 | ID=MS.gene037828.t1.exon2;Parent=MS.gene037828.t1 |
| chr8.3 | CDS | 80274235 | 80274363 | 80274235 | ID=cds.MS.gene037828.t1;Parent=MS.gene037828.t1 |
| chr8.3 | exon | 80275251 | 80275538 | 80275251 | ID=MS.gene037828.t1.exon3;Parent=MS.gene037828.t1 |
| chr8.3 | CDS | 80275251 | 80275538 | 80275251 | ID=cds.MS.gene037828.t1;Parent=MS.gene037828.t1 |
| Gene Sequence |
| Protein sequence |
