AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037917

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037917.t1 MTR_1g048320 91.279 344 25 2 1 339 1 344 0.0 613
MS.gene037917.t1 MTR_1g031060 71.651 321 83 5 24 339 45 362 1.29e-148 423
MS.gene037917.t1 MTR_1g031080 60.870 345 72 6 2 339 4 292 5.25e-134 383
MS.gene037917.t1 MTR_2g087610 56.757 296 116 4 56 339 73 368 1.56e-108 321
MS.gene037917.t1 MTR_3g106930 48.475 295 124 6 61 339 95 377 3.60e-80 249
MS.gene037917.t1 MTR_2g005350 39.024 287 147 9 60 336 168 436 2.42e-51 176
MS.gene037917.t1 MTR_1g110290 35.806 310 174 6 35 336 99 391 3.80e-50 172
MS.gene037917.t1 MTR_2g037600 34.098 305 149 8 58 331 103 386 1.68e-48 167
MS.gene037917.t1 MTR_4g127550 34.539 304 146 8 59 331 106 387 2.19e-48 167
MS.gene037917.t1 MTR_5g055480 38.328 287 147 8 60 336 122 388 6.79e-48 166
MS.gene037917.t1 MTR_8g015500 35.315 286 159 7 60 336 143 411 1.23e-47 166
MS.gene037917.t1 MTR_1g009960 34.098 305 155 6 53 329 104 390 1.23e-45 160
MS.gene037917.t1 MTR_2g037620 33.993 303 147 8 60 331 97 377 1.54e-45 159
MS.gene037917.t1 MTR_3g108740 36.156 307 142 9 55 329 87 371 1.57e-45 159
MS.gene037917.t1 MTR_1g009960 35.338 266 149 5 53 313 104 351 1.25e-44 157
MS.gene037917.t1 MTR_5g006930 36.620 284 150 9 60 332 116 380 1.33e-44 157
MS.gene037917.t1 MTR_1g016880 34.520 281 157 8 60 331 106 368 7.54e-44 155
MS.gene037917.t1 MTR_6g083830 35.689 283 154 7 60 332 149 413 8.93e-44 155
MS.gene037917.t1 MTR_5g006920 36.268 284 151 9 60 332 151 415 5.54e-42 151
MS.gene037917.t1 MTR_3g104840 34.202 307 158 7 35 332 116 387 1.13e-41 149
MS.gene037917.t1 MTR_2g024120 29.167 336 165 13 39 321 36 351 1.71e-27 111
MS.gene037917.t1 MTR_8g094180 27.217 327 167 9 59 332 54 362 3.49e-25 104
MS.gene037917.t1 MTR_8g094180 29.091 275 147 8 59 303 54 310 3.66e-25 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037917.t1 AT3G52060 57.325 314 115 6 35 339 43 346 1.40e-122 356
MS.gene037917.t1 AT5G22070 51.253 359 144 9 9 339 7 362 1.29e-115 339
MS.gene037917.t1 AT5G25330 44.648 327 142 10 33 339 55 362 6.60e-79 246
MS.gene037917.t1 AT4G32290 46.130 323 140 7 37 339 71 379 3.84e-77 241
MS.gene037917.t1 AT4G31350 38.538 301 135 8 56 329 84 361 1.44e-58 193
MS.gene037917.t1 AT4G31350 38.538 301 140 8 56 329 84 366 1.61e-57 191
MS.gene037917.t1 AT4G31350 38.538 301 140 8 56 329 84 366 1.61e-57 191
MS.gene037917.t1 AT4G31350 38.538 301 140 8 56 329 84 366 1.61e-57 191
MS.gene037917.t1 AT5G25970 38.596 285 148 9 57 332 115 381 1.40e-51 176
MS.gene037917.t1 AT5G25970 38.596 285 148 9 57 332 115 381 1.40e-51 176
MS.gene037917.t1 AT5G25970 38.596 285 148 9 57 332 115 381 1.40e-51 176
MS.gene037917.t1 AT3G21310 36.713 286 154 7 60 336 114 381 3.91e-50 172
MS.gene037917.t1 AT3G21310 36.713 286 154 7 60 336 114 381 3.91e-50 172
MS.gene037917.t1 AT1G51770 35.664 286 157 7 60 336 123 390 1.18e-47 166
MS.gene037917.t1 AT5G11730 34.965 286 159 7 60 336 117 384 2.56e-47 164
MS.gene037917.t1 AT1G10280 35.192 287 158 8 60 336 142 410 6.37e-46 161
MS.gene037917.t1 AT1G10880 34.520 281 159 6 60 332 117 380 2.91e-45 159
MS.gene037917.t1 AT4G25870 34.835 333 156 11 33 331 75 380 3.60e-45 159
MS.gene037917.t1 AT1G68390 33.866 313 178 7 35 336 112 406 3.10e-44 157
MS.gene037917.t1 AT1G68380 34.877 324 174 9 28 337 91 391 1.05e-43 155
MS.gene037917.t1 AT2G19160 34.323 303 145 9 61 331 106 386 3.36e-43 154
MS.gene037917.t1 AT2G19160 34.323 303 145 9 61 331 106 386 3.36e-43 154
MS.gene037917.t1 AT4G30060 34.323 303 145 8 61 331 109 389 7.24e-43 153
MS.gene037917.t1 AT4G30060 34.323 303 145 8 61 331 109 389 7.24e-43 153
MS.gene037917.t1 AT5G57270 35.252 278 149 6 59 327 96 351 1.70e-42 152
MS.gene037917.t1 AT5G57270 35.252 278 149 6 59 327 96 351 1.70e-42 152
MS.gene037917.t1 AT5G57270 35.252 278 149 6 59 327 96 351 1.70e-42 152
MS.gene037917.t1 AT5G57270 35.252 278 149 6 59 327 96 351 1.70e-42 152
MS.gene037917.t1 AT5G57270 35.252 278 149 6 59 327 96 351 1.70e-42 152
MS.gene037917.t1 AT5G16170 34.495 287 154 8 61 332 136 403 3.41e-40 146
MS.gene037917.t1 AT1G73810 36.644 292 147 11 61 336 147 416 1.90e-39 144
MS.gene037917.t1 AT1G51770 31.469 286 142 7 60 336 123 363 4.83e-35 131
MS.gene037917.t1 AT5G14550 29.392 296 170 8 44 318 44 321 1.35e-30 119
MS.gene037917.t1 AT5G14550 27.988 343 176 10 44 333 44 368 5.85e-29 115
MS.gene037917.t1 AT5G14550 27.900 319 177 9 44 327 44 344 1.08e-28 114
MS.gene037917.t1 AT1G11940 28.528 326 169 9 45 324 58 365 1.70e-28 114
MS.gene037917.t1 AT1G62305 29.003 331 154 14 45 321 53 356 1.17e-26 108
MS.gene037917.t1 AT1G62305 31.200 250 119 10 45 267 53 276 2.01e-23 99.0
MS.gene037917.t1 AT5G14550 27.356 329 169 12 44 333 44 341 1.83e-21 94.0
MS.gene037917.t1 AT1G11940 33.173 208 115 8 45 247 58 246 2.60e-20 89.4
MS.gene037917.t1 AT3G21310 45.133 113 59 3 60 171 114 224 4.65e-20 88.6

Find 109 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCACCTTTGCTCCTTTA+TGG 0.074069 1.1:+31620397 MS.gene037917:CDS
TTGAATCTTGTACTTGTTTA+AGG 0.108034 1.1:-31620706 None:intergenic
TAGGAAGAGGAAGGCGATTT+TGG 0.185523 1.1:-31620364 None:intergenic
GTTGAAGAGGTGGTTGTTTC+CGG 0.217030 1.1:-31620433 None:intergenic
GTTGGAAAGTAATGCTCTTC+TGG 0.233444 1.1:-31620948 None:intergenic
CCTCACCTTTGCTCCTTTAT+GGG 0.265226 1.1:+31620398 MS.gene037917:CDS
CCTTTGCATGGTTCCGGTTC+AGG 0.283118 1.1:-31620857 None:intergenic
AGGTCCTCCGCGTCGGGGTC+AGG 0.290705 1.1:-31620279 None:intergenic
AAGGGATGAAGTGGCTTTGA+TGG 0.297513 1.1:-31620509 None:intergenic
AAAAGTTGTGGAAGAAGTTT+CGG 0.336219 1.1:+31620895 MS.gene037917:CDS
TTACTCTTACGAGAGTTAAC+TGG 0.341127 1.1:+31621009 MS.gene037917:CDS
AGGTGAGGTTGGTATTTGTT+AGG 0.341432 1.1:-31620383 None:intergenic
GAACAACCTTTGCATGGTTC+CGG 0.347319 1.1:-31620863 None:intergenic
GTAATGCTCTTCTGGGTAAC+AGG 0.352431 1.1:-31620940 None:intergenic
TTATGGGAAATATTCTTTGC+CGG 0.354403 1.1:+31620414 MS.gene037917:CDS
ATCAACGGTGCTAGTGTTTC+CGG 0.362374 1.1:-31621149 None:intergenic
CGCAGTTCTTTATCCTGAAC+CGG 0.364355 1.1:+31620844 MS.gene037917:CDS
CGGGGTCAGGGTTGGAAAAC+GGG 0.368387 1.1:-31620266 None:intergenic
TCTCTTAGCCACTGCTATAT+TGG 0.370952 1.1:+31620581 MS.gene037917:CDS
GGGTGAGACAACAGAGGAAA+TGG 0.381450 1.1:-31620475 None:intergenic
AGAGCAAGGTCCTCCGCGTC+GGG 0.395834 1.1:-31620285 None:intergenic
TGTACGCCAGCTTAGGAAAT+CGG 0.400199 1.1:+31621088 MS.gene037917:CDS
GCAAAGAATATTTCCCATAA+AGG 0.406338 1.1:-31620411 None:intergenic
GTTCTTTAGGTTAAATAAGT+GGG 0.421988 1.1:-31620334 None:intergenic
TCGGGGTCAGGGTTGGAAAA+CGG 0.425351 1.1:-31620267 None:intergenic
GGAAACACTAGCACCGTTGA+TGG 0.436751 1.1:+31621151 MS.gene037917:CDS
CGGAGCTTGTACGCCAGCTT+AGG 0.440581 1.1:+31621081 MS.gene037917:CDS
GGTCCTCCGCGTCGGGGTCA+GGG 0.440712 1.1:-31620278 None:intergenic
GCTTTGATGGAAGACGCCTC+CGG 0.443380 1.1:-31620496 None:intergenic
GGTTGGTATTTGTTAGGAAG+AGG 0.449439 1.1:-31620377 None:intergenic
GTAAAACCAGTGCAGCCATC+CGG 0.456279 1.1:-31620990 None:intergenic
TCTTCTATCGATGGAGGACC+CGG 0.458996 1.1:+31620971 MS.gene037917:CDS
CTCTCTTCCGCCGCGCCACA+AGG 0.462891 1.1:+31620304 MS.gene037917:CDS
CTCCGCGTCGGGGTCAGGGT+TGG 0.467120 1.1:-31620274 None:intergenic
AATACAATGTTGGGAGAGTA+AGG 0.471648 1.1:-31620628 None:intergenic
TTGGAAAGTAATGCTCTTCT+GGG 0.472293 1.1:-31620947 None:intergenic
GATGCCGGAGGTTTCATTCA+AGG 0.472977 1.1:+31620806 MS.gene037917:CDS
GGTTCTTTAGGTTAAATAAG+TGG 0.477319 1.1:-31620335 None:intergenic
ATTTCCTCTGTTGTCTCACC+CGG 0.480740 1.1:+31620477 MS.gene037917:CDS
AAGTGACGGAGAGGCACGTT+GGG 0.481033 1.1:-31620541 None:intergenic
AAGTCAATCTCAATGAAGCT+AGG 0.484069 1.1:-31620732 None:intergenic
GAGGACCCGGATGGCTGCAC+TGG 0.486529 1.1:+31620984 MS.gene037917:CDS
GAAGAGTGGAATACAATGTT+GGG 0.491853 1.1:-31620637 None:intergenic
GAATTTCCTTGCAAACAGAT+AGG 0.494280 1.1:-31621123 None:intergenic
CTTTCCAACTCTTCTATCGA+TGG 0.497559 1.1:+31620962 MS.gene037917:CDS
CTAAGCTGGCGTACAAGCTC+CGG 0.504844 1.1:-31621080 None:intergenic
CTTTGATGGAAGACGCCTCC+GGG 0.508919 1.1:-31620495 None:intergenic
CAGGAACTCTTATCTATACA+TGG 0.509702 1.1:-31620921 None:intergenic
TAAAATCCGATTTCCTAAGC+TGG 0.511119 1.1:-31621094 None:intergenic
GTTATTCCTATCTGTTTGCA+AGG 0.511432 1.1:+31621117 MS.gene037917:CDS
TTATAGCGCTGGTAGAGATT+CGG 0.513272 1.1:-31620762 None:intergenic
TTCCACGAGCATTATAGCGC+TGG 0.514680 1.1:-31620773 None:intergenic
TACTCGAGAGGAGGTGTCGC+CGG 0.514897 1.1:+31621061 MS.gene037917:CDS
AGAAGAGTGGAATACAATGT+TGG 0.514911 1.1:-31620638 None:intergenic
TGCAGTACAAGTTTCAATCT+CGG 0.523348 1.1:-31621196 None:intergenic
AGTTAACTGGACTGGTTGTA+CGG 0.524550 1.1:+31621022 MS.gene037917:CDS
TCCTCCATCGATAGAAGAGT+TGG 0.526190 1.1:-31620966 None:intergenic
GGGAGAGTAAGGCAAAGTAT+TGG 0.537563 1.1:-31620617 None:intergenic
AAATCCTTGAATGAAACCTC+CGG 0.545006 1.1:-31620810 None:intergenic
GGTGAGACAACAGAGGAAAT+GGG 0.547850 1.1:-31620474 None:intergenic
CTTACGAGAGTTAACTGGAC+TGG 0.548736 1.1:+31621014 MS.gene037917:CDS
GGTATTTGTTAGGAAGAGGA+AGG 0.549687 1.1:-31620373 None:intergenic
TTCTTTAGGTTAAATAAGTG+GGG 0.550325 1.1:-31620333 None:intergenic
TAAAACCAGTGCAGCCATCC+GGG 0.551737 1.1:-31620989 None:intergenic
AGTCAATCTCAATGAAGCTA+GGG 0.551844 1.1:-31620731 None:intergenic
GGCTAAGAGACGGCGAGCAG+CGG 0.557898 1.1:-31620568 None:intergenic
GCGCTATAATGCTCGTGGAA+AGG 0.565767 1.1:+31620776 MS.gene037917:CDS
AGGCAAAGTATTGGTTATGC+GGG 0.566058 1.1:-31620608 None:intergenic
TGGAAAGGATGTAATGATGC+CGG 0.568418 1.1:+31620791 MS.gene037917:CDS
GAAAACGGGAAGTAAGATTG+AGG 0.570111 1.1:-31620252 None:intergenic
TAAAGGAGCAAAGGTGAGGT+TGG 0.572056 1.1:-31620394 None:intergenic
TTCTGCGAGATCAAAAGTTG+TGG 0.575067 1.1:+31620883 MS.gene037917:CDS
GAGAGCAAGGTCCTCCGCGT+CGG 0.575874 1.1:-31620286 None:intergenic
AAAACGGGAAGTAAGATTGA+GGG 0.576076 1.1:-31620251 None:intergenic
TCCTCTCGAGTATAAAGATG+CGG 0.582936 1.1:-31621050 None:intergenic
TCCTCTGTTGTCTCACCCGG+AGG 0.583294 1.1:+31620480 MS.gene037917:CDS
TACCAGCGCTATAATGCTCG+TGG 0.583876 1.1:+31620771 MS.gene037917:CDS
CTCGCAGAACAACCTTTGCA+TGG 0.585317 1.1:-31620869 None:intergenic
GTTTGCAAGGAAATTCTCAC+CGG 0.585980 1.1:+31621130 MS.gene037917:CDS
CCCATAAAGGAGCAAAGGTG+AGG 0.594602 1.1:-31620398 None:intergenic
TGGCGCGGCGGAAGAGAGCA+AGG 0.594820 1.1:-31620299 None:intergenic
CCTCTCGAGTATAAAGATGC+GGG 0.597296 1.1:-31621049 None:intergenic
AAGGCAAAGTATTGGTTATG+CGG 0.608135 1.1:-31620609 None:intergenic
TATTTCCCATAAAGGAGCAA+AGG 0.610784 1.1:-31620403 None:intergenic
ACAAATCGAAACGAGAAGAG+TGG 0.612100 1.1:-31620651 None:intergenic
CGAGCAGCGGCTATAAGTGA+CGG 0.620401 1.1:-31620555 None:intergenic
CTATCGATGGAGGACCCGGA+TGG 0.620435 1.1:+31620975 MS.gene037917:CDS
AAACGGGAAGTAAGATTGAG+GGG 0.627961 1.1:-31620250 None:intergenic
ATATAGCAGTGGCTAAGAGA+CGG 0.629423 1.1:-31620578 None:intergenic
TCCAACTCTTCTATCGATGG+AGG 0.630039 1.1:+31620965 MS.gene037917:CDS
CAACCCTGACCCCGACGCGG+AGG 0.630344 1.1:+31620275 MS.gene037917:CDS
GGATGTAGATGTTGAAGAGG+TGG 0.641305 1.1:-31620443 None:intergenic
TTCCAACCCTGACCCCGACG+CGG 0.643455 1.1:+31620272 MS.gene037917:CDS
TCATAAGCTATATCCATCAA+CGG 0.653143 1.1:-31621164 None:intergenic
CGGGTCATCCAATATAGCAG+TGG 0.653653 1.1:-31620589 None:intergenic
CGTGGATGTAGATGTTGAAG+AGG 0.655044 1.1:-31620446 None:intergenic
GGGGTGTTGTCCTTGTGGCG+CGG 0.655134 1.1:-31620314 None:intergenic
GAGCAAGGTCCTCCGCGTCG+GGG 0.655727 1.1:-31620284 None:intergenic
TAAGTGACGGAGAGGCACGT+TGG 0.660309 1.1:-31620542 None:intergenic
CCTGAACCGGAACCATGCAA+AGG 0.664001 1.1:+31620857 MS.gene037917:CDS
AGCGGCTATAAGTGACGGAG+AGG 0.667766 1.1:-31620550 None:intergenic
CCCGCATCTTTATACTCGAG+AGG 0.669713 1.1:+31621049 MS.gene037917:CDS
CTCGAGTATAAAGATGCGGG+TGG 0.683495 1.1:-31621046 None:intergenic
TAAGTGGGGTGTTGTCCTTG+TGG 0.684395 1.1:-31620319 None:intergenic
GCATCTTTATACTCGAGAGG+AGG 0.684710 1.1:+31621052 MS.gene037917:CDS
GTGTTGTCCTTGTGGCGCGG+CGG 0.702688 1.1:-31620311 None:intergenic
CAGAGGAAATGGGATCTGCG+TGG 0.703706 1.1:-31620464 None:intergenic
AAAGGATGTAATGATGCCGG+AGG 0.717780 1.1:+31620794 MS.gene037917:CDS
GCCTCCGGGTGAGACAACAG+AGG 0.763777 1.1:-31620481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATCCCTTTTTGAAAAT+CGG + chr1.1:31620676-31620695 MS.gene037917:CDS 20.0%
! TTGAATCTTGTACTTGTTTA+AGG - chr1.1:31620709-31620728 None:intergenic 25.0%
!! GTTCTTTAGGTTAAATAAGT+GGG - chr1.1:31620337-31620356 None:intergenic 25.0%
!! TTCTTTAGGTTAAATAAGTG+GGG - chr1.1:31620336-31620355 None:intergenic 25.0%
!!! TAAATCCCTTTTTGAAAATC+GGG + chr1.1:31620677-31620696 MS.gene037917:CDS 25.0%
AAAAGTTGTGGAAGAAGTTT+CGG + chr1.1:31620895-31620914 MS.gene037917:CDS 30.0%
GCAAAGAATATTTCCCATAA+AGG - chr1.1:31620414-31620433 None:intergenic 30.0%
TCATAAGCTATATCCATCAA+CGG - chr1.1:31621167-31621186 None:intergenic 30.0%
TTATGGGAAATATTCTTTGC+CGG + chr1.1:31620414-31620433 MS.gene037917:CDS 30.0%
! GGTTCTTTAGGTTAAATAAG+TGG - chr1.1:31620338-31620357 None:intergenic 30.0%
AAAACGGGAAGTAAGATTGA+GGG - chr1.1:31620254-31620273 None:intergenic 35.0%
AAATCCTTGAATGAAACCTC+CGG - chr1.1:31620813-31620832 None:intergenic 35.0%
AAGTCAATCTCAATGAAGCT+AGG - chr1.1:31620735-31620754 None:intergenic 35.0%
AATACAATGTTGGGAGAGTA+AGG - chr1.1:31620631-31620650 None:intergenic 35.0%
AGAAGAGTGGAATACAATGT+TGG - chr1.1:31620641-31620660 None:intergenic 35.0%
AGTCAATCTCAATGAAGCTA+GGG - chr1.1:31620734-31620753 None:intergenic 35.0%
CAGGAACTCTTATCTATACA+TGG - chr1.1:31620924-31620943 None:intergenic 35.0%
GAAGAGTGGAATACAATGTT+GGG - chr1.1:31620640-31620659 None:intergenic 35.0%
GAATTTCCTTGCAAACAGAT+AGG - chr1.1:31621126-31621145 None:intergenic 35.0%
GTTATTCCTATCTGTTTGCA+AGG + chr1.1:31621117-31621136 MS.gene037917:CDS 35.0%
TAAAATCCGATTTCCTAAGC+TGG - chr1.1:31621097-31621116 None:intergenic 35.0%
TATTTCCCATAAAGGAGCAA+AGG - chr1.1:31620406-31620425 None:intergenic 35.0%
TTACTCTTACGAGAGTTAAC+TGG + chr1.1:31621009-31621028 MS.gene037917:CDS 35.0%
TTGGAAAGTAATGCTCTTCT+GGG - chr1.1:31620950-31620969 None:intergenic 35.0%
! ACTCTACCCGATTTTCAAAA+AGG - chr1.1:31620686-31620705 None:intergenic 35.0%
! CTCTACCCGATTTTCAAAAA+GGG - chr1.1:31620685-31620704 None:intergenic 35.0%
! TCATTCAAGGATTTTCGCAA+AGG + chr1.1:31620819-31620838 MS.gene037917:CDS 35.0%
!! AAGGCAAAGTATTGGTTATG+CGG - chr1.1:31620612-31620631 None:intergenic 35.0%
!!! TTGTTTTAGAAGGGATGAAG+TGG - chr1.1:31620521-31620540 None:intergenic 35.0%
!!! TTTTGGGTTTAGGGTTCTTT+AGG - chr1.1:31620350-31620369 None:intergenic 35.0%
AAACGGGAAGTAAGATTGAG+GGG - chr1.1:31620253-31620272 None:intergenic 40.0%
ACAAATCGAAACGAGAAGAG+TGG - chr1.1:31620654-31620673 None:intergenic 40.0%
ATATAGCAGTGGCTAAGAGA+CGG - chr1.1:31620581-31620600 None:intergenic 40.0%
CTTTCCAACTCTTCTATCGA+TGG + chr1.1:31620962-31620981 MS.gene037917:CDS 40.0%
GAAAACGGGAAGTAAGATTG+AGG - chr1.1:31620255-31620274 None:intergenic 40.0%
GTTGGAAAGTAATGCTCTTC+TGG - chr1.1:31620951-31620970 None:intergenic 40.0%
GTTTGCAAGGAAATTCTCAC+CGG + chr1.1:31621130-31621149 MS.gene037917:CDS 40.0%
TCCTCTCGAGTATAAAGATG+CGG - chr1.1:31621053-31621072 None:intergenic 40.0%
TCTCTTAGCCACTGCTATAT+TGG + chr1.1:31620581-31620600 MS.gene037917:CDS 40.0%
TGGAAAGGATGTAATGATGC+CGG + chr1.1:31620791-31620810 MS.gene037917:CDS 40.0%
TTCTGCGAGATCAAAAGTTG+TGG + chr1.1:31620883-31620902 MS.gene037917:CDS 40.0%
! GGTATTTGTTAGGAAGAGGA+AGG - chr1.1:31620376-31620395 None:intergenic 40.0%
! GGTTGGTATTTGTTAGGAAG+AGG - chr1.1:31620380-31620399 None:intergenic 40.0%
!! AGGCAAAGTATTGGTTATGC+GGG - chr1.1:31620611-31620630 None:intergenic 40.0%
!! AGGTGAGGTTGGTATTTGTT+AGG - chr1.1:31620386-31620405 None:intergenic 40.0%
!! AGTTAACTGGACTGGTTGTA+CGG + chr1.1:31621022-31621041 MS.gene037917:CDS 40.0%
!! TTATAGCGCTGGTAGAGATT+CGG - chr1.1:31620765-31620784 None:intergenic 40.0%
!!! CACGTTGGGTTGTTTTAGAA+GGG - chr1.1:31620530-31620549 None:intergenic 40.0%
AAAGGATGTAATGATGCCGG+AGG + chr1.1:31620794-31620813 MS.gene037917:CDS 45.0%
ACCTCACCTTTGCTCCTTTA+TGG + chr1.1:31620397-31620416 MS.gene037917:CDS 45.0%
ATTTCCTCTGTTGTCTCACC+CGG + chr1.1:31620477-31620496 MS.gene037917:CDS 45.0%
CCTCACCTTTGCTCCTTTAT+GGG + chr1.1:31620398-31620417 MS.gene037917:CDS 45.0%
CCTCTCGAGTATAAAGATGC+GGG - chr1.1:31621052-31621071 None:intergenic 45.0%
CGCAGTTCTTTATCCTGAAC+CGG + chr1.1:31620844-31620863 MS.gene037917:CDS 45.0%
CGTGGATGTAGATGTTGAAG+AGG - chr1.1:31620449-31620468 None:intergenic 45.0%
CTTACGAGAGTTAACTGGAC+TGG + chr1.1:31621014-31621033 MS.gene037917:CDS 45.0%
GAACAACCTTTGCATGGTTC+CGG - chr1.1:31620866-31620885 None:intergenic 45.0%
GCATCTTTATACTCGAGAGG+AGG + chr1.1:31621052-31621071 MS.gene037917:CDS 45.0%
GGATGTAGATGTTGAAGAGG+TGG - chr1.1:31620446-31620465 None:intergenic 45.0%
GGGAGAGTAAGGCAAAGTAT+TGG - chr1.1:31620620-31620639 None:intergenic 45.0%
GGTGAGACAACAGAGGAAAT+GGG - chr1.1:31620477-31620496 None:intergenic 45.0%
GTAATGCTCTTCTGGGTAAC+AGG - chr1.1:31620943-31620962 None:intergenic 45.0%
TAAAGGAGCAAAGGTGAGGT+TGG - chr1.1:31620397-31620416 None:intergenic 45.0%
TCCAACTCTTCTATCGATGG+AGG + chr1.1:31620965-31620984 MS.gene037917:CDS 45.0%
TCCTCCATCGATAGAAGAGT+TGG - chr1.1:31620969-31620988 None:intergenic 45.0%
TGTACGCCAGCTTAGGAAAT+CGG + chr1.1:31621088-31621107 MS.gene037917:CDS 45.0%
! AGGAAGAGGAAGGCGATTTT+GGG - chr1.1:31620366-31620385 None:intergenic 45.0%
! ATCAACGGTGCTAGTGTTTC+CGG - chr1.1:31621152-31621171 None:intergenic 45.0%
! GTTGAAGAGGTGGTTGTTTC+CGG - chr1.1:31620436-31620455 None:intergenic 45.0%
! TAGGAAGAGGAAGGCGATTT+TGG - chr1.1:31620367-31620386 None:intergenic 45.0%
!! AAGGGATGAAGTGGCTTTGA+TGG - chr1.1:31620512-31620531 None:intergenic 45.0%
!!! AGGAAGGCGATTTTGGGTTT+AGG - chr1.1:31620360-31620379 None:intergenic 45.0%
!!! GCACGTTGGGTTGTTTTAGA+AGG - chr1.1:31620531-31620550 None:intergenic 45.0%
!!! GGAAGGCGATTTTGGGTTTA+GGG - chr1.1:31620359-31620378 None:intergenic 45.0%
CCCATAAAGGAGCAAAGGTG+AGG - chr1.1:31620401-31620420 None:intergenic 50.0%
CCCGCATCTTTATACTCGAG+AGG + chr1.1:31621049-31621068 MS.gene037917:CDS 50.0%
CGGGTCATCCAATATAGCAG+TGG - chr1.1:31620592-31620611 None:intergenic 50.0%
CTCGAGTATAAAGATGCGGG+TGG - chr1.1:31621049-31621068 None:intergenic 50.0%
CTCGCAGAACAACCTTTGCA+TGG - chr1.1:31620872-31620891 None:intergenic 50.0%
GATGCCGGAGGTTTCATTCA+AGG + chr1.1:31620806-31620825 MS.gene037917:CDS 50.0%
GCGCTATAATGCTCGTGGAA+AGG + chr1.1:31620776-31620795 MS.gene037917:CDS 50.0%
GGAAACACTAGCACCGTTGA+TGG + chr1.1:31621151-31621170 MS.gene037917:CDS 50.0%
GGGTGAGACAACAGAGGAAA+TGG - chr1.1:31620478-31620497 None:intergenic 50.0%
GTAAAACCAGTGCAGCCATC+CGG - chr1.1:31620993-31621012 None:intergenic 50.0%
TAAAACCAGTGCAGCCATCC+GGG - chr1.1:31620992-31621011 None:intergenic 50.0%
TACCAGCGCTATAATGCTCG+TGG + chr1.1:31620771-31620790 MS.gene037917:CDS 50.0%
TCTTCTATCGATGGAGGACC+CGG + chr1.1:31620971-31620990 MS.gene037917:CDS 50.0%
TTCCACGAGCATTATAGCGC+TGG - chr1.1:31620776-31620795 None:intergenic 50.0%
!! TAAGTGGGGTGTTGTCCTTG+TGG - chr1.1:31620322-31620341 None:intergenic 50.0%
CAGAGGAAATGGGATCTGCG+TGG - chr1.1:31620467-31620486 None:intergenic 55.0%
CCTGAACCGGAACCATGCAA+AGG + chr1.1:31620857-31620876 MS.gene037917:CDS 55.0%
CCTTTGCATGGTTCCGGTTC+AGG - chr1.1:31620860-31620879 None:intergenic 55.0%
CGAGCAGCGGCTATAAGTGA+CGG - chr1.1:31620558-31620577 None:intergenic 55.0%
CTAAGCTGGCGTACAAGCTC+CGG - chr1.1:31621083-31621102 None:intergenic 55.0%
CTTTGATGGAAGACGCCTCC+GGG - chr1.1:31620498-31620517 None:intergenic 55.0%
GCTTTGATGGAAGACGCCTC+CGG - chr1.1:31620499-31620518 None:intergenic 55.0%
TCGGGGTCAGGGTTGGAAAA+CGG - chr1.1:31620270-31620289 None:intergenic 55.0%
! AAGTGACGGAGAGGCACGTT+GGG - chr1.1:31620544-31620563 None:intergenic 55.0%
! AGCGGCTATAAGTGACGGAG+AGG - chr1.1:31620553-31620572 None:intergenic 55.0%
! TAAGTGACGGAGAGGCACGT+TGG - chr1.1:31620545-31620564 None:intergenic 55.0%
CGGAGCTTGTACGCCAGCTT+AGG + chr1.1:31621081-31621100 MS.gene037917:CDS 60.0%
CGGGGTCAGGGTTGGAAAAC+GGG - chr1.1:31620269-31620288 None:intergenic 60.0%
CTATCGATGGAGGACCCGGA+TGG + chr1.1:31620975-31620994 MS.gene037917:CDS 60.0%
TCCTCTGTTGTCTCACCCGG+AGG + chr1.1:31620480-31620499 MS.gene037917:CDS 60.0%
!! TACTCGAGAGGAGGTGTCGC+CGG + chr1.1:31621061-31621080 MS.gene037917:CDS 60.0%
AGAGCAAGGTCCTCCGCGTC+GGG - chr1.1:31620288-31620307 None:intergenic 65.0%
GAGAGCAAGGTCCTCCGCGT+CGG - chr1.1:31620289-31620308 None:intergenic 65.0%
GCCTCCGGGTGAGACAACAG+AGG - chr1.1:31620484-31620503 None:intergenic 65.0%
GGCTAAGAGACGGCGAGCAG+CGG - chr1.1:31620571-31620590 None:intergenic 65.0%
GTGTTGTCCTTGTGGCGCGG+CGG - chr1.1:31620314-31620333 None:intergenic 65.0%
TTCCAACCCTGACCCCGACG+CGG + chr1.1:31620272-31620291 MS.gene037917:CDS 65.0%
!! GGGGTGTTGTCCTTGTGGCG+CGG - chr1.1:31620317-31620336 None:intergenic 65.0%
CTCTCTTCCGCCGCGCCACA+AGG + chr1.1:31620304-31620323 MS.gene037917:CDS 70.0%
GAGCAAGGTCCTCCGCGTCG+GGG - chr1.1:31620287-31620306 None:intergenic 70.0%
GAGGACCCGGATGGCTGCAC+TGG + chr1.1:31620984-31621003 MS.gene037917:CDS 70.0%
TGGCGCGGCGGAAGAGAGCA+AGG - chr1.1:31620302-31620321 None:intergenic 70.0%
AGGTCCTCCGCGTCGGGGTC+AGG - chr1.1:31620282-31620301 None:intergenic 75.0%
CAACCCTGACCCCGACGCGG+AGG + chr1.1:31620275-31620294 MS.gene037917:CDS 75.0%
CTCCGCGTCGGGGTCAGGGT+TGG - chr1.1:31620277-31620296 None:intergenic 75.0%
GGTCCTCCGCGTCGGGGTCA+GGG - chr1.1:31620281-31620300 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 31620186 31621205 31620186 ID=MS.gene037917
chr1.1 mRNA 31620186 31621205 31620186 ID=MS.gene037917.t1;Parent=MS.gene037917
chr1.1 exon 31620186 31621205 31620186 ID=MS.gene037917.t1.exon1;Parent=MS.gene037917.t1
chr1.1 CDS 31620186 31621205 31620186 ID=cds.MS.gene037917.t1;Parent=MS.gene037917.t1
Gene Sequence

>MS.gene037917

ATGTCGAAATTACGCGTTCTGATAGTCTTGTTATTTTCTCTCTTAATCACTCTCTTCTTTTTCTCCCCTCAATCTTACTTCCCGTTTTCCAACCCTGACCCCGACGCGGAGGACCTTGCTCTCTTCCGCCGCGCCACAAGGACAACACCCCACTTATTTAACCTAAAGAACCCTAAACCCAAAATCGCCTTCCTCTTCCTAACAAATACCAACCTCACCTTTGCTCCTTTATGGGAAATATTCTTTGCCGGAAACAACCACCTCTTCAACATCTACATCCACGCAGATCCCATTTCCTCTGTTGTCTCACCCGGAGGCGTCTTCCATCAAAGCCACTTCATCCCTTCTAAAACAACCCAACGTGCCTCTCCGTCACTTATAGCCGCTGCTCGCCGTCTCTTAGCCACTGCTATATTGGATGACCCGCATAACCAATACTTTGCCTTACTCTCCCAACATTGTATTCCACTCTTCTCGTTTCGATTTGTTTATAAATCCCTTTTTGAAAATCGGGTAGAGTCCTTAAACAAGTACAAGATTCAACACCCTAGCTTCATTGAGATTGACTTTAAACATCCGAATCTCTACCAGCGCTATAATGCTCGTGGAAAGGATGTAATGATGCCGGAGGTTTCATTCAAGGATTTTCGCAAAGGCTCGCAGTTCTTTATCCTGAACCGGAACCATGCAAAGGTTGTTCTGCGAGATCAAAAGTTGTGGAAGAAGTTTCGGATTCCATGTATAGATAAGAGTTCCTGTTACCCAGAAGAGCATTACTTTCCAACTCTTCTATCGATGGAGGACCCGGATGGCTGCACTGGTTTTACTCTTACGAGAGTTAACTGGACTGGTTGTACGGACCACCCGCATCTTTATACTCGAGAGGAGGTGTCGCCGGAGCTTGTACGCCAGCTTAGGAAATCGGATTTTAGTTATTCCTATCTGTTTGCAAGGAAATTCTCACCGGAAACACTAGCACCGTTGATGGATATAGCTTATGATGTCATTTTCCGAGATTGA
Protein sequence

>MS.gene037917.t1

MSKLRVLIVLLFSLLITLFFFSPQSYFPFSNPDPDAEDLALFRRATRTTPHLFNLKNPKPKIAFLFLTNTNLTFAPLWEIFFAGNNHLFNIYIHADPISSVVSPGGVFHQSHFIPSKTTQRASPSLIAAARRLLATAILDDPHNQYFALLSQHCIPLFSFRFVYKSLFENRVESLNKYKIQHPSFIEIDFKHPNLYQRYNARGKDVMMPEVSFKDFRKGSQFFILNRNHAKVVLRDQKLWKKFRIPCIDKSSCYPEEHYFPTLLSMEDPDGCTGFTLTRVNWTGCTDHPHLYTREEVSPELVRQLRKSDFSYSYLFARKFSPETLAPLMDIAYDVIFRD