AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030588

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030588.t1 MTR_8g094180 98.343 362 1 1 1 357 1 362 0.0 739
MS.gene030588.t1 MTR_8g094180 99.365 315 2 0 1 315 1 315 0.0 655
MS.gene030588.t1 MTR_2g024120 50.392 383 169 6 1 373 6 377 9.35e-134 387
MS.gene030588.t1 MTR_2g037600 39.550 311 150 10 55 356 105 386 3.86e-62 204
MS.gene030588.t1 MTR_4g127550 38.141 312 156 10 53 356 105 387 2.63e-60 199
MS.gene030588.t1 MTR_2g037620 38.782 312 154 7 53 356 95 377 5.89e-59 196
MS.gene030588.t1 MTR_1g016880 38.636 308 142 9 55 358 106 370 2.68e-57 191
MS.gene030588.t1 MTR_5g055480 36.842 304 144 9 55 354 122 381 2.30e-53 181
MS.gene030588.t1 MTR_1g009960 34.505 313 169 8 51 355 107 391 7.76e-52 177
MS.gene030588.t1 MTR_5g006930 37.134 307 145 11 53 354 114 377 2.98e-51 176
MS.gene030588.t1 MTR_1g110290 36.156 307 147 9 55 356 124 386 4.27e-51 176
MS.gene030588.t1 MTR_6g083830 37.540 309 141 11 53 354 147 410 2.22e-50 174
MS.gene030588.t1 MTR_3g108740 34.615 312 168 8 51 354 88 371 4.03e-50 172
MS.gene030588.t1 MTR_2g005350 37.013 308 148 10 55 358 168 433 4.86e-50 174
MS.gene030588.t1 MTR_8g015500 35.714 308 152 8 53 356 141 406 8.87e-49 170
MS.gene030588.t1 MTR_5g006920 36.156 307 148 10 53 354 149 412 2.48e-47 166
MS.gene030588.t1 MTR_1g009960 35.294 272 145 6 51 319 107 350 7.81e-47 164
MS.gene030588.t1 MTR_3g104840 33.546 313 145 10 40 349 127 379 4.80e-44 157
MS.gene030588.t1 MTR_1g031060 29.412 323 161 10 54 356 79 354 6.71e-28 112
MS.gene030588.t1 MTR_3g106930 28.758 306 177 9 56 354 95 366 1.22e-27 112
MS.gene030588.t1 MTR_2g087610 29.874 318 149 10 56 345 78 349 1.55e-24 103
MS.gene030588.t1 MTR_1g048320 27.795 331 170 13 46 356 55 336 9.43e-22 95.5
MS.gene030588.t1 MTR_1g031080 27.778 324 152 12 60 358 20 286 1.33e-20 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030588.t1 AT5G14550 69.811 371 97 4 1 359 1 368 0.0 541
MS.gene030588.t1 AT5G14550 70.219 366 94 4 1 354 1 363 0.0 539
MS.gene030588.t1 AT5G14550 65.229 371 87 5 1 359 1 341 8.03e-174 488
MS.gene030588.t1 AT5G14550 65.538 325 84 5 1 313 1 309 3.27e-154 438
MS.gene030588.t1 AT1G11940 50.552 362 165 5 2 355 16 371 3.04e-124 363
MS.gene030588.t1 AT1G62305 55.305 311 134 5 54 363 67 373 3.28e-120 353
MS.gene030588.t1 AT1G62305 50.482 311 125 6 54 363 67 349 1.70e-101 304
MS.gene030588.t1 AT1G62305 59.716 211 81 4 54 263 67 274 1.79e-81 252
MS.gene030588.t1 AT1G11940 52.101 238 103 3 2 231 16 250 1.34e-78 243
MS.gene030588.t1 AT4G31350 36.508 315 163 7 50 356 83 368 1.04e-58 195
MS.gene030588.t1 AT4G31350 36.508 315 163 7 50 356 83 368 1.04e-58 195
MS.gene030588.t1 AT4G31350 36.508 315 163 7 50 356 83 368 1.04e-58 195
MS.gene030588.t1 AT5G57270 38.095 315 152 10 54 356 96 379 9.95e-58 192
MS.gene030588.t1 AT5G57270 38.095 315 152 10 54 356 96 379 9.95e-58 192
MS.gene030588.t1 AT5G57270 38.095 315 152 10 54 356 96 379 9.95e-58 192
MS.gene030588.t1 AT5G57270 38.095 315 152 10 54 356 96 379 9.95e-58 192
MS.gene030588.t1 AT5G57270 38.095 315 152 10 54 356 96 379 9.95e-58 192
MS.gene030588.t1 AT1G10280 36.570 309 148 9 55 358 142 407 4.14e-55 186
MS.gene030588.t1 AT1G73810 38.816 304 140 10 56 354 147 409 7.49e-55 186
MS.gene030588.t1 AT4G31350 35.556 315 161 7 50 356 83 363 1.09e-54 184
MS.gene030588.t1 AT2G19160 36.246 309 161 8 56 356 106 386 3.08e-53 181
MS.gene030588.t1 AT2G19160 36.246 309 161 8 56 356 106 386 3.08e-53 181
MS.gene030588.t1 AT1G68390 33.657 309 160 7 53 357 135 402 1.14e-52 180
MS.gene030588.t1 AT4G25870 36.102 313 157 11 56 356 99 380 1.95e-51 176
MS.gene030588.t1 AT5G16170 36.601 306 152 8 56 357 136 403 1.95e-50 174
MS.gene030588.t1 AT5G11730 36.039 308 146 10 55 356 117 379 2.23e-50 173
MS.gene030588.t1 AT1G51770 35.948 306 149 8 55 356 123 385 2.55e-50 174
MS.gene030588.t1 AT4G30060 34.304 309 167 8 56 356 109 389 4.05e-49 171
MS.gene030588.t1 AT4G30060 34.304 309 167 8 56 356 109 389 4.05e-49 171
MS.gene030588.t1 AT1G10880 34.354 294 148 7 55 345 117 368 7.44e-48 167
MS.gene030588.t1 AT1G68380 35.948 306 149 10 55 356 123 385 2.51e-45 160
MS.gene030588.t1 AT3G21310 35.505 307 149 10 55 356 114 376 4.39e-45 159
MS.gene030588.t1 AT3G21310 35.505 307 149 10 55 356 114 376 4.39e-45 159
MS.gene030588.t1 AT5G25970 34.314 306 154 9 55 356 118 380 2.83e-44 157
MS.gene030588.t1 AT5G25970 34.314 306 154 9 55 356 118 380 2.83e-44 157
MS.gene030588.t1 AT5G25970 34.314 306 154 9 55 356 118 380 2.83e-44 157
MS.gene030588.t1 AT1G51770 31.788 302 140 8 55 356 123 358 7.12e-36 135
MS.gene030588.t1 AT5G25330 30.547 311 169 8 56 356 81 354 7.91e-34 129
MS.gene030588.t1 AT4G32290 29.904 311 176 9 56 356 93 371 1.41e-28 115
MS.gene030588.t1 AT3G52060 29.236 301 158 10 55 346 74 328 1.73e-28 114
MS.gene030588.t1 AT5G22070 29.794 339 158 14 40 346 54 344 4.79e-26 107
MS.gene030588.t1 AT3G21310 41.135 141 75 4 55 191 114 250 5.41e-24 100

Find 64 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCCGCTACCCGAATTT+TGG 0.189280 4.2:-8698336 MS.gene030588:CDS
GATGCGGTATACTCATGTTT+TGG 0.236011 4.2:-8701982 MS.gene030588:CDS
TGGTTTGGGATGCATTCTTT+AGG 0.289253 4.2:-8701866 MS.gene030588:CDS
CAGTTATTCCAGTTTATAAC+TGG 0.289938 4.2:-8698846 MS.gene030588:CDS
GCTTCCTTTGGAATTGGTTT+GGG 0.305701 4.2:-8701880 MS.gene030588:CDS
GGTTTGGGATGCATTCTTTA+GGG 0.307058 4.2:-8701865 MS.gene030588:intron
TTGGTGGTGGTGCTTTGTTT+TGG 0.307690 4.2:-8702023 MS.gene030588:CDS
GATGCTTATTAAATTTATAA+AGG 0.310256 4.2:-8697656 MS.gene030588:intron
GACTTGATCCCTCCAAAATT+CGG 0.318399 4.2:+8698324 None:intergenic
GGCTTCCTTTGGAATTGGTT+TGG 0.319839 4.2:-8701881 MS.gene030588:CDS
TAGTAAACTTTCTTGCAAAA+AGG 0.331608 4.2:+8697056 None:intergenic
TACAACCTTGGCATGCTTCC+TGG 0.336465 4.2:+8698676 None:intergenic
AGAAAGTGGTTCAGCAGAAA+TGG 0.341229 4.2:-8702070 MS.gene030588:CDS
CAGTTATAAACTGGAATAAC+TGG 0.344271 4.2:+8698847 None:intergenic
ATGAAGAGAAAAGCAATCTT+AGG 0.355547 4.2:+8701915 None:intergenic
TGCAAGGAATAGGCTTCCTT+TGG 0.360242 4.2:-8701892 MS.gene030588:CDS
TCCACGGCGCTCACGATCTC+TGG 0.364508 4.2:+8697717 None:intergenic
GAATAGGCTTCCTTTGGAAT+TGG 0.368624 4.2:-8701886 MS.gene030588:CDS
TTCTCTTCATTGCAAGGAAT+AGG 0.401929 4.2:-8701902 MS.gene030588:CDS
TGCAGTGGGCTGTGCTGACC+AGG 0.406399 4.2:-8698694 MS.gene030588:intron
GTTTGAACATAGTGTTCATC+TGG 0.409473 4.2:+8698038 None:intergenic
AAAACAAAGCGGTCATTTAG+AGG 0.415697 4.2:+8699791 None:intergenic
CCAGTTTATAACTGGAGAAA+AGG 0.418484 4.2:-8698838 MS.gene030588:CDS
TGCTTGTACACCATTCTCTT+CGG 0.432521 4.2:+8697101 None:intergenic
TGGTATACAGTTGTGGATCT+TGG 0.438795 4.2:+8698058 None:intergenic
GTGTAGCTGAAGTTGTATAA+AGG 0.444599 4.2:+8699254 None:intergenic
ACTTGATCCCTCCAAAATTC+GGG 0.445648 4.2:+8698325 None:intergenic
TTACTAGGACTGCTGCTTTG+AGG 0.451390 4.2:-8697039 MS.gene030588:CDS
ACACTATGTTCAAACATTGC+TGG 0.459415 4.2:-8698030 MS.gene030588:CDS
TGCTTTGAGGCTTCTTAACA+TGG 0.485012 4.2:-8697026 MS.gene030588:intron
TTTATAAATTTAATAAGCAT+CGG 0.496105 4.2:+8697658 None:intergenic
TAACTGGAGAAAAGGATCTC+AGG 0.503043 4.2:-8698830 MS.gene030588:intron
TGGATCTTGGACGTGTCAGC+AGG 0.503820 4.2:+8698071 None:intergenic
GCGCTCACGATCTCTGGAGT+TGG 0.504969 4.2:+8697723 None:intergenic
TACAGCTTCGCTGACACAAA+AGG 0.505137 4.2:-8698895 MS.gene030588:intron
ATCGTCCTCCACTACAACCT+TGG 0.509580 4.2:+8698664 None:intergenic
CACCTATCGACAAAACTAGT+TGG 0.511751 4.2:+8699209 None:intergenic
TCCCTCCAAAATTCGGGTAG+CGG 0.515418 4.2:+8698331 None:intergenic
TCTGAGAACTTATAAGTCAC+TGG 0.518003 4.2:+8697688 None:intergenic
GTAGAATATGAAGAAGAAAG+TGG 0.518812 4.2:-8702084 None:intergenic
TCAAGTTAATGATAGCATAC+AGG 0.530790 4.2:-8700720 MS.gene030588:intron
GCCAGGGTTTGTGTTGAATG+AGG 0.535969 4.2:-8700774 MS.gene030588:CDS
GGGTGAAGCAAGCATGATAG+AGG 0.536814 4.2:-8699849 MS.gene030588:CDS
TCAGCAGAAATGGAAGAAGA+AGG 0.538184 4.2:-8702060 MS.gene030588:CDS
AAGAGAATGGTGTACAAGCA+AGG 0.546374 4.2:-8697098 MS.gene030588:CDS
GAAGCATGCCAAGGTTGTAG+TGG 0.562145 4.2:-8698672 MS.gene030588:CDS
TTCAACACAAACCCTGGCCT+AGG 0.569608 4.2:+8700779 None:intergenic
GTTCATCTGGTATACAGTTG+TGG 0.575948 4.2:+8698051 None:intergenic
GCCTCATTCAACACAAACCC+TGG 0.577011 4.2:+8700773 None:intergenic
ATGTCTAAGTAAAATTCGCT+CGG 0.583854 4.2:+8699826 None:intergenic
GATCAGTGACACATACTGCA+TGG 0.596005 4.2:-8697753 MS.gene030588:CDS
GTTTGTTGTTTATGCAGATG+CGG 0.596175 4.2:-8701998 MS.gene030588:CDS
ATCAGTGACACATACTGCAT+GGG 0.597196 4.2:-8697752 MS.gene030588:CDS
AGAGAATGGTGTACAAGCAA+GGG 0.597758 4.2:-8697097 MS.gene030588:CDS
GAGATCGTGAGCGCCGTGGA+TGG 0.599731 4.2:-8697714 MS.gene030588:CDS
GCATGCCAAGGTTGTAGTGG+AGG 0.609985 4.2:-8698669 MS.gene030588:CDS
AGACTGAATACCGAAGAGAA+TGG 0.627600 4.2:-8697111 MS.gene030588:CDS
AAGTCACTGGATGCCATCCA+CGG 0.632825 4.2:+8697701 None:intergenic
GCATCCCAAACCAATTCCAA+AGG 0.633005 4.2:+8701876 None:intergenic
TCCAGAGATCGTGAGCGCCG+TGG 0.637645 4.2:-8697718 MS.gene030588:CDS
TATACCCTCACCTATCTGAG+AGG 0.685286 4.2:+8699768 None:intergenic
AGCTTCGCTGACACAAAAGG+AGG 0.705360 4.2:-8698892 MS.gene030588:CDS
GCTGACCAGGAAGCATGCCA+AGG 0.707493 4.2:-8698681 MS.gene030588:CDS
TATCTGAGAGGAAAACAAAG+CGG 0.756541 4.2:+8699780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATTTAATAAGCAT+CGG + chr4.2:8700774-8700793 None:intergenic 10.0%
!!! AACTATTATTTTTTATAATG+AGG + chr4.2:8702078-8702097 None:intergenic 10.0%
!!! ACTATTATTTTTTATAATGA+GGG + chr4.2:8702077-8702096 None:intergenic 10.0%
!!! TAATTAATATTTTGTTAGAA+TGG - chr4.2:8700909-8700928 MS.gene030588:intron 10.0%
!!! TGATTTATTTTTTTTTTTGT+AGG - chr4.2:8701274-8701293 MS.gene030588:intron 10.0%
!! AAATGAATAATTAACTACAA+AGG + chr4.2:8699475-8699494 None:intergenic 15.0%
!! AGAAAAAAAAAAAAAAAGCA+AGG - chr4.2:8701005-8701024 MS.gene030588:intron 15.0%
!! ATTAAGATTCAGAATTTATT+AGG + chr4.2:8701077-8701096 None:intergenic 15.0%
!! ATTTAACAAAACTAATTGTT+GGG + chr4.2:8699403-8699422 None:intergenic 15.0%
!! GATGCTTATTAAATTTATAA+AGG - chr4.2:8700773-8700792 MS.gene030588:CDS 15.0%
!! TATATAAACTAATAAAAGCA+AGG - chr4.2:8700967-8700986 MS.gene030588:intron 15.0%
!! TATATAATGATTGAAGTTTA+TGG + chr4.2:8698700-8698719 None:intergenic 15.0%
!! TATTTAACAAAACTAATTGT+TGG + chr4.2:8699404-8699423 None:intergenic 15.0%
!!! TAATAGTAGTTTTTACTTTT+TGG - chr4.2:8697123-8697142 MS.gene030588:CDS 15.0%
!!! TTGAAATAATCTCATTTTAT+CGG - chr4.2:8698400-8698419 MS.gene030588:intron 15.0%
!!! TTTTGTTTCTATTTGTTTTT+TGG - chr4.2:8696614-8696633 MS.gene030588:intron 15.0%
!! AAAAATATTAAAGCAAAACC+AGG + chr4.2:8700593-8700612 None:intergenic 20.0%
!! AAAATATTAAAGCAAAACCA+GGG + chr4.2:8700592-8700611 None:intergenic 20.0%
!! AACTATATAGAGAAACTATT+AGG - chr4.2:8697854-8697873 MS.gene030588:intron 20.0%
!! AACTATTTGGTAGAATATTA+TGG - chr4.2:8697914-8697933 MS.gene030588:intron 20.0%
!! AGAAGAATTCATAAAAAGAT+AGG + chr4.2:8699716-8699735 None:intergenic 20.0%
!! AGATTAATGTCGTATATATA+TGG + chr4.2:8699296-8699315 None:intergenic 20.0%
!! ATAAAAAGATAGGTATAAGA+TGG + chr4.2:8699706-8699725 None:intergenic 20.0%
!! ATGGAATAAAAAACACTAAA+TGG + chr4.2:8700005-8700024 None:intergenic 20.0%
!! ATGTTAACTAAATATCATGA+AGG + chr4.2:8698539-8698558 None:intergenic 20.0%
!! CTAAATGTACAATACAATAT+CGG + chr4.2:8701959-8701978 None:intergenic 20.0%
!! GAAATAATAAATGAAGCAAA+AGG + chr4.2:8699914-8699933 None:intergenic 20.0%
!! GATAGAAATAAGAAACTATT+TGG - chr4.2:8697901-8697920 MS.gene030588:intron 20.0%
!! GGTTTCAAAAAAATTTAGTT+TGG + chr4.2:8698888-8698907 None:intergenic 20.0%
!! TTATGTGTTTATTTATCACA+TGG - chr4.2:8698323-8698342 MS.gene030588:CDS 20.0%
!! TTCAATATTTCATTCTGAAT+TGG - chr4.2:8700253-8700272 MS.gene030588:intron 20.0%
!! TTCATTCTGTGATAATAATA+GGG - chr4.2:8700845-8700864 MS.gene030588:intron 20.0%
!! TTGAGTTATTTATCTAAACA+AGG - chr4.2:8701742-8701761 MS.gene030588:intron 20.0%
!! TTGTTTATGGTAAGATAATA+TGG - chr4.2:8697074-8697093 MS.gene030588:CDS 20.0%
!! TTTCATTCTGTGATAATAAT+AGG - chr4.2:8700844-8700863 MS.gene030588:intron 20.0%
!!! AAATGAAATTTGTTAGTAGA+AGG - chr4.2:8696873-8696892 MS.gene030588:intron 20.0%
!!! AATGTTTCAAAAATTTTGCA+AGG - chr4.2:8699799-8699818 MS.gene030588:CDS 20.0%
!!! TTCTTTTGATGTTTTAAACA+TGG + chr4.2:8698468-8698487 None:intergenic 20.0%
!!! TTGCAAAATTTTTGAAACAT+TGG + chr4.2:8699800-8699819 None:intergenic 20.0%
!!! TTGGGTTTTATAACATTTAA+TGG + chr4.2:8699974-8699993 None:intergenic 20.0%
!!! TTTCTCTATATAGTTTTTCT+AGG + chr4.2:8697849-8697868 None:intergenic 20.0%
!!! TTTGACTTTATTTGATCTTT+TGG - chr4.2:8698177-8698196 MS.gene030588:intron 20.0%
! AAAAAAGCTGATAACAACTT+AGG + chr4.2:8698102-8698121 None:intergenic 25.0%
! AAAAAGCTGATAACAACTTA+GGG + chr4.2:8698101-8698120 None:intergenic 25.0%
! AAAGTCAAACTATGTTTCAT+AGG + chr4.2:8701648-8701667 None:intergenic 25.0%
! AAATCATTATTCCAAAGAAG+AGG + chr4.2:8697340-8697359 None:intergenic 25.0%
! AACATATGGTCAATAAGTTA+TGG + chr4.2:8697423-8697442 None:intergenic 25.0%
! AAGCTCTTCTGTATAATTTA+TGG - chr4.2:8698126-8698145 MS.gene030588:intron 25.0%
! AAGTCAAACTTCTTTCATAT+AGG + chr4.2:8698165-8698184 None:intergenic 25.0%
! AATAATAGGGTTATCATACT+AGG - chr4.2:8700858-8700877 MS.gene030588:intron 25.0%
! ACTGAATTGTTCATAAAGTT+TGG - chr4.2:8698776-8698795 MS.gene030588:intron 25.0%
! ACTTTATGAACAATTCAGTT+CGG + chr4.2:8698775-8698794 None:intergenic 25.0%
! ATAAGTGCTTATCATATTAG+TGG + chr4.2:8701707-8701726 None:intergenic 25.0%
! ATCTGGAAAAAGAAACATAT+AGG + chr4.2:8696752-8696771 None:intergenic 25.0%
! ATGGTAAGTTCATATATCAT+AGG - chr4.2:8701422-8701441 MS.gene030588:intron 25.0%
! ATTAATCTGTTTATCCAAAC+AGG - chr4.2:8698232-8698251 MS.gene030588:intron 25.0%
! CAATCAACTGAAATATAGTA+AGG + chr4.2:8699135-8699154 None:intergenic 25.0%
! CAGAAAATAAGTAACAATCT+CGG + chr4.2:8701776-8701795 None:intergenic 25.0%
! CTAACATTTGCCTATAAAAA+AGG + chr4.2:8696834-8696853 None:intergenic 25.0%
! CTTATATTATGTGTCTCAAT+TGG - chr4.2:8699834-8699853 MS.gene030588:CDS 25.0%
! GACATAACTGTGTATTTAAA+AGG + chr4.2:8697198-8697217 None:intergenic 25.0%
! TAGTAAACTTTCTTGCAAAA+AGG + chr4.2:8701376-8701395 None:intergenic 25.0%
! TCCACAATAATTTAGCTAAA+GGG + chr4.2:8697455-8697474 None:intergenic 25.0%
! TGAAACAAAACTGATAACTA+GGG - chr4.2:8699007-8699026 MS.gene030588:intron 25.0%
! TGGTAAGTTCATATATCATA+GGG - chr4.2:8701423-8701442 MS.gene030588:intron 25.0%
! TTAATCTGTTTATCCAAACA+GGG - chr4.2:8698233-8698252 MS.gene030588:intron 25.0%
! TTCCACAATAATTTAGCTAA+AGG + chr4.2:8697456-8697475 None:intergenic 25.0%
! TTGAGACACATAATATAAGA+AGG + chr4.2:8699833-8699852 None:intergenic 25.0%
!! AACAGTTCTAATATTCGATT+TGG + chr4.2:8698958-8698977 None:intergenic 25.0%
!! AACATTTGTATTGCATTTTC+AGG - chr4.2:8697595-8697614 MS.gene030588:intron 25.0%
!! ACATTTGTATTGCATTTTCA+GGG - chr4.2:8697596-8697615 MS.gene030588:intron 25.0%
!! TTTAGTTTCTTCGATTTGAT+TGG - chr4.2:8701502-8701521 MS.gene030588:intron 25.0%
!! TTTTTATAGGCAAATGTTAG+TGG - chr4.2:8696834-8696853 MS.gene030588:intron 25.0%
!! TTTTTGCAAGAAAGTTTACT+AGG - chr4.2:8701375-8701394 MS.gene030588:intron 25.0%
!!! GTTAGTGGTTGTTTTATTAA+GGG - chr4.2:8696849-8696868 MS.gene030588:intron 25.0%
!!! GTTGATGTTACCTTTTTTAT+AGG - chr4.2:8696821-8696840 MS.gene030588:intron 25.0%
!!! TAGTTATCAGTTTTGTTTCA+CGG + chr4.2:8699007-8699026 None:intergenic 25.0%
!!! TGTTAGTGGTTGTTTTATTA+AGG - chr4.2:8696848-8696867 MS.gene030588:intron 25.0%
!!! TTAGTGGTTGTTTTATTAAG+GGG - chr4.2:8696850-8696869 MS.gene030588:intron 25.0%
!!! TTCTAAGTCTTGTTAAATAG+CGG - chr4.2:8701197-8701216 MS.gene030588:intron 25.0%
!!! TTCTAATATTCGATTTGGTT+TGG + chr4.2:8698953-8698972 None:intergenic 25.0%
AAACCAAATGATTCTTTGTG+AGG - chr4.2:8698903-8698922 MS.gene030588:intron 30.0%
AAATACACAGTTATGTCCTT+TGG - chr4.2:8697201-8697220 MS.gene030588:intron 30.0%
AATAAGCTGTTATAGTTGAC+TGG - chr4.2:8697812-8697831 MS.gene030588:intron 30.0%
AATACACAGTTATGTCCTTT+GGG - chr4.2:8697202-8697221 MS.gene030588:intron 30.0%
ACACTAAATGGAAGAAAGAT+TGG + chr4.2:8699993-8700012 None:intergenic 30.0%
AGACACATAATATAAGAAGG+AGG + chr4.2:8699830-8699849 None:intergenic 30.0%
AGACTATAGAACTTCATAGT+TGG + chr4.2:8698298-8698317 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr4.2:8697879-8697898 MS.gene030588:intron 30.0%
ATAAGCTGTTATAGTTGACT+GGG - chr4.2:8697813-8697832 MS.gene030588:intron 30.0%
ATCTTTCATTAGTTGACTGA+CGG + chr4.2:8701108-8701127 None:intergenic 30.0%
ATGAAGAGAAAAGCAATCTT+AGG + chr4.2:8696517-8696536 None:intergenic 30.0%
ATGTCTAAGTAAAATTCGCT+CGG + chr4.2:8698606-8698625 None:intergenic 30.0%
ATTCAGAATTTATTAGGAGC+AGG + chr4.2:8701071-8701090 None:intergenic 30.0%
ATTGGTACATGATGTCAATT+AGG - chr4.2:8700271-8700290 MS.gene030588:intron 30.0%
ATTTCATAGAATGCTAGTTG+TGG - chr4.2:8697543-8697562 MS.gene030588:intron 30.0%
CACTAAATGGAAGAAAGATT+GGG + chr4.2:8699992-8700011 None:intergenic 30.0%
CAGTTATAAACTGGAATAAC+TGG + chr4.2:8699585-8699604 None:intergenic 30.0%
CAGTTATTCCAGTTTATAAC+TGG - chr4.2:8699583-8699602 MS.gene030588:intron 30.0%
CATAAGATAGTAAATGGACA+TGG + chr4.2:8697782-8697801 None:intergenic 30.0%
CCAACACATAAGATAGTAAA+TGG + chr4.2:8697788-8697807 None:intergenic 30.0%
CCACAATAATTTAGCTAAAG+GGG + chr4.2:8697454-8697473 None:intergenic 30.0%
CCATACGTTGCTTAATTATA+TGG - chr4.2:8699064-8699083 MS.gene030588:intron 30.0%
CCATATAATTAAGCAACGTA+TGG + chr4.2:8699067-8699086 None:intergenic 30.0%
CCATTTACTATCTTATGTGT+TGG - chr4.2:8697785-8697804 MS.gene030588:CDS 30.0%
GATTGAGTATTTAAGTGACT+TGG - chr4.2:8697252-8697271 MS.gene030588:intron 30.0%
GTGAAACAAAACTGATAACT+AGG - chr4.2:8699006-8699025 MS.gene030588:intron 30.0%
TAATCTGTTTATCCAAACAG+GGG - chr4.2:8698234-8698253 MS.gene030588:intron 30.0%
TAATGTTACATTCCTTTCCT+TGG - chr4.2:8698259-8698278 MS.gene030588:intron 30.0%
TCAAGTTAATGATAGCATAC+AGG - chr4.2:8697709-8697728 MS.gene030588:CDS 30.0%
TTAAAAGCTAGCTATCAAGA+GGG + chr4.2:8697283-8697302 None:intergenic 30.0%
TTTATGAATTCTTCTGCAGT+GGG - chr4.2:8699721-8699740 MS.gene030588:intron 30.0%
! AAAACCATGAGAGTATATGA+TGG + chr4.2:8699938-8699957 None:intergenic 30.0%
! ATCTTTTTGCAGATAGATTG+GGG - chr4.2:8698560-8698579 MS.gene030588:intron 30.0%
! GATCTTTTTGCAGATAGATT+GGG - chr4.2:8698559-8698578 MS.gene030588:intron 30.0%
! TCAAATAAGTCGATTCAAAC+AGG + chr4.2:8698010-8698029 None:intergenic 30.0%
! TGATCTTTTTGCAGATAGAT+TGG - chr4.2:8698558-8698577 MS.gene030588:intron 30.0%
! TTATTTTCATAAGCTTGCCA+AGG - chr4.2:8701619-8701638 MS.gene030588:intron 30.0%
! TTTTATGAATTCTTCTGCAG+TGG - chr4.2:8699720-8699739 MS.gene030588:intron 30.0%
!! CTTATTTTCTGATTCTCTGT+TGG - chr4.2:8701785-8701804 MS.gene030588:intron 30.0%
!! GAAGGTTTTTGCTTTGATTT+TGG - chr4.2:8696387-8696406 MS.gene030588:CDS 30.0%
!! GAATGGTACTTGATAATGAT+AGG - chr4.2:8700926-8700945 MS.gene030588:intron 30.0%
!!! TTTTACTTTTTGGAGAGCTT+AGG - chr4.2:8697133-8697152 MS.gene030588:CDS 30.0%
AAAACAAAGCGGTCATTTAG+AGG + chr4.2:8698641-8698660 None:intergenic 35.0%
AAATGTTGTTATGACAAGCG+AGG + chr4.2:8697380-8697399 None:intergenic 35.0%
AACAAAATGCTTATTGCCAG+TGG - chr4.2:8701839-8701858 MS.gene030588:intron 35.0%
AAGAGACAAGCACAAATGTA+TGG + chr4.2:8700024-8700043 None:intergenic 35.0%
AAGTACTCTCCACTTACTAT+AGG - chr4.2:8698719-8698738 MS.gene030588:intron 35.0%
AATATTACGAACGAGGATCT+AGG + chr4.2:8696906-8696925 None:intergenic 35.0%
ACACTATGTTCAAACATTGC+TGG - chr4.2:8700399-8700418 MS.gene030588:intron 35.0%
ACTTACTATAGGACTCTTCA+TGG - chr4.2:8698730-8698749 MS.gene030588:intron 35.0%
AGCTCTTTCAAACAGTCTAA+AGG + chr4.2:8701558-8701577 None:intergenic 35.0%
AGGTCGTTACAATCCAAAAA+TGG - chr4.2:8699557-8699576 MS.gene030588:intron 35.0%
AGTCCTCACAAAGAATCATT+TGG + chr4.2:8698909-8698928 None:intergenic 35.0%
AGTGTAGGGACAATTGTTTA+TGG - chr4.2:8697061-8697080 MS.gene030588:CDS 35.0%
ATACACAGTTATGTCCTTTG+GGG - chr4.2:8697203-8697222 MS.gene030588:intron 35.0%
ATACTTGTCATCCTCTTCTT+TGG - chr4.2:8697326-8697345 MS.gene030588:intron 35.0%
ATCAACACATCCTCAAAGAA+GGG + chr4.2:8696939-8696958 None:intergenic 35.0%
ATGAAGAGTCCTATAGTAAG+TGG + chr4.2:8698731-8698750 None:intergenic 35.0%
ATGATGTCAATTAGGTTCGT+AGG - chr4.2:8700279-8700298 MS.gene030588:intron 35.0%
ATTTATTAGGAGCAGGATCA+AGG + chr4.2:8701064-8701083 None:intergenic 35.0%
CCAGTTTATAACTGGAGAAA+AGG - chr4.2:8699591-8699610 MS.gene030588:intron 35.0%
CCCCTTTAGCTAAATTATTG+TGG - chr4.2:8697451-8697470 MS.gene030588:intron 35.0%
CTTAAAAGCTAGCTATCAAG+AGG + chr4.2:8697284-8697303 None:intergenic 35.0%
GAAAAAGCAAAAAACTGAGC+TGG - chr4.2:8698980-8698999 MS.gene030588:intron 35.0%
GAGATTGAATGAGAGAACTT+AGG - chr4.2:8698056-8698075 MS.gene030588:CDS 35.0%
GTGTAGCTGAAGTTGTATAA+AGG + chr4.2:8699178-8699197 None:intergenic 35.0%
GTTTGAACATAGTGTTCATC+TGG + chr4.2:8700394-8700413 None:intergenic 35.0%
TATCTGAGAGGAAAACAAAG+CGG + chr4.2:8698652-8698671 None:intergenic 35.0%
TCTGAGAACTTATAAGTCAC+TGG + chr4.2:8700744-8700763 None:intergenic 35.0%
TGTAACATTAAACCCCTGTT+TGG + chr4.2:8698249-8698268 None:intergenic 35.0%
TTCAATCTCACAAGCGTTTA+TGG + chr4.2:8698045-8698064 None:intergenic 35.0%
TTCTCCATCATATACTCTCA+TGG - chr4.2:8699931-8699950 MS.gene030588:intron 35.0%
TTCTCTTCATTGCAAGGAAT+AGG - chr4.2:8696527-8696546 MS.gene030588:intron 35.0%
! AAAAGCAAGGTGTGAGATTT+TGG - chr4.2:8701018-8701037 MS.gene030588:intron 35.0%
! ATCATTGATTAGTGCAGTGT+AGG - chr4.2:8697046-8697065 MS.gene030588:CDS 35.0%
! ATGACAAGTATCAAAGCACT+TGG + chr4.2:8697317-8697336 None:intergenic 35.0%
! ATGCGGTATACTCATGTTTT+GGG - chr4.2:8696448-8696467 MS.gene030588:intron 35.0%
! CCTTTTCTCCAGTTATAAAC+TGG + chr4.2:8699594-8699613 None:intergenic 35.0%
! GGAATAACTGGATCCATTTT+TGG + chr4.2:8699573-8699592 None:intergenic 35.0%
! GTGTGTACTTGGTGATTAAT+AGG - chr4.2:8696657-8696676 MS.gene030588:intron 35.0%
! GTTGTTGTTGTAGTTGACTT+AGG - chr4.2:8697984-8698003 MS.gene030588:intron 35.0%
! TCAAGAAAGTGATTTTGCAG+TGG + chr4.2:8700818-8700837 None:intergenic 35.0%
! TCATTGATTAGTGCAGTGTA+GGG - chr4.2:8697047-8697066 MS.gene030588:CDS 35.0%
! TCTCAATTTTCGTTCATCCT+AGG - chr4.2:8697633-8697652 MS.gene030588:intron 35.0%
! TGACAAGTATCAAAGCACTT+GGG + chr4.2:8697316-8697335 None:intergenic 35.0%
! TGTACTTGGTGATTAATAGG+AGG - chr4.2:8696660-8696679 MS.gene030588:intron 35.0%
!! AGTGTTACAAGTTCTGAATC+TGG + chr4.2:8696769-8696788 None:intergenic 35.0%
!! CAGTCTAAAGGTGTTTATGT+CGG + chr4.2:8701546-8701565 None:intergenic 35.0%
!! GGTTTTTGCTTTGATTTTGG+TGG - chr4.2:8696390-8696409 MS.gene030588:intron 35.0%
!! GTTTGTTGTTTATGCAGATG+CGG - chr4.2:8696431-8696450 MS.gene030588:intron 35.0%
!! TTCGTGTTAGTTCTTTTTCG+AGG + chr4.2:8700656-8700675 None:intergenic 35.0%
!! TTGCTTTTCTCTTCATTGCA+AGG - chr4.2:8696521-8696540 MS.gene030588:intron 35.0%
!! TTTGTATTGCATTTTCAGGG+AGG - chr4.2:8697599-8697618 MS.gene030588:intron 35.0%
!! TTTTGCTTTGATTTTGGTGG+TGG - chr4.2:8696393-8696412 MS.gene030588:intron 35.0%
!!! GATAGCTAGCTTTTAAGAGA+GGG - chr4.2:8697287-8697306 MS.gene030588:intron 35.0%
!!! TGATAGCTAGCTTTTAAGAG+AGG - chr4.2:8697286-8697305 MS.gene030588:intron 35.0%
AAGAGAATGGTGTACAAGCA+AGG - chr4.2:8701331-8701350 MS.gene030588:intron 40.0%
AAGGGGAGTCTCTTAACATA+TGG + chr4.2:8697437-8697456 None:intergenic 40.0%
ACTTGATCCCTCCAAAATTC+GGG + chr4.2:8700107-8700126 None:intergenic 40.0%
AGAAAGTGGTTCAGCAGAAA+TGG - chr4.2:8696359-8696378 MS.gene030588:CDS 40.0%
AGACTGAATACCGAAGAGAA+TGG - chr4.2:8701318-8701337 MS.gene030588:intron 40.0%
AGAGAATGGTGTACAAGCAA+GGG - chr4.2:8701332-8701351 MS.gene030588:intron 40.0%
ATCAGTGACACATACTGCAT+GGG - chr4.2:8700677-8700696 MS.gene030588:intron 40.0%
ATGCAACAGTGTTCACAGAA+AGG + chr4.2:8700441-8700460 None:intergenic 40.0%
CACCTATCGACAAAACTAGT+TGG + chr4.2:8699223-8699242 None:intergenic 40.0%
CATCAACACATCCTCAAAGA+AGG + chr4.2:8696940-8696959 None:intergenic 40.0%
CTAGAGGAATATTACGAACG+AGG + chr4.2:8696913-8696932 None:intergenic 40.0%
CTATGTTTCATAGGCTACCT+TGG + chr4.2:8701639-8701658 None:intergenic 40.0%
GAAATGTTGAGGTGCAGTAA+TGG - chr4.2:8697565-8697584 MS.gene030588:intron 40.0%
GACTTGATCCCTCCAAAATT+CGG + chr4.2:8700108-8700127 None:intergenic 40.0%
GTCTATGGAGTTCTATCAGA+AGG - chr4.2:8697161-8697180 MS.gene030588:intron 40.0%
GTTCATCTGGTATACAGTTG+TGG + chr4.2:8700381-8700400 None:intergenic 40.0%
GTTTCAAACAACGAGAGAAG+AGG + chr4.2:8697737-8697756 None:intergenic 40.0%
TAACTGGAGAAAAGGATCTC+AGG - chr4.2:8699599-8699618 MS.gene030588:intron 40.0%
TATGTGTGTGTGTGTGTACT+TGG - chr4.2:8696646-8696665 MS.gene030588:intron 40.0%
TCAGCAGAAATGGAAGAAGA+AGG - chr4.2:8696369-8696388 MS.gene030588:CDS 40.0%
TCTTGCAAAAAGGAAGCAAG+TGG + chr4.2:8701366-8701385 None:intergenic 40.0%
TGATTCTTTGTGAGGACTGT+TGG - chr4.2:8698911-8698930 MS.gene030588:intron 40.0%
TGCTAGTTGTGGAAATGTTG+AGG - chr4.2:8697554-8697573 MS.gene030588:intron 40.0%
TGCTTGTACACCATTCTCTT+CGG + chr4.2:8701331-8701350 None:intergenic 40.0%
TGGTATACAGTTGTGGATCT+TGG + chr4.2:8700374-8700393 None:intergenic 40.0%
TGTTATAGTTGACTGGGTAG+AGG - chr4.2:8697819-8697838 MS.gene030588:intron 40.0%
TTGGTACGAAACCACATAAC+CGG + chr4.2:8698869-8698888 None:intergenic 40.0%
! AAGCTTTATCCCACTAAGTG+GGG + chr4.2:8697963-8697982 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG + chr4.2:8697964-8697983 None:intergenic 40.0%
! GATGCGGTATACTCATGTTT+TGG - chr4.2:8696447-8696466 MS.gene030588:intron 40.0%
! GGTTTGGGATGCATTCTTTA+GGG - chr4.2:8696564-8696583 MS.gene030588:intron 40.0%
! TCTGTTGGACAGTCTGTTTT+GGG - chr4.2:8701800-8701819 MS.gene030588:intron 40.0%
! TGCGGTATACTCATGTTTTG+GGG - chr4.2:8696449-8696468 MS.gene030588:intron 40.0%
! TGGTTTGGGATGCATTCTTT+AGG - chr4.2:8696563-8696582 MS.gene030588:intron 40.0%
! TTTTCCTCTCAGATAGGTGA+GGG - chr4.2:8698657-8698676 MS.gene030588:CDS 40.0%
!! AGATTCTAGTTCATCCCCAA+AGG + chr4.2:8697220-8697239 None:intergenic 40.0%
!! ATATTTTTACGCGATCACCC+TGG - chr4.2:8700572-8700591 MS.gene030588:intron 40.0%
!! GAATAGGCTTCCTTTGGAAT+TGG - chr4.2:8696543-8696562 MS.gene030588:intron 40.0%
!! GCTTCCTTTGGAATTGGTTT+GGG - chr4.2:8696549-8696568 MS.gene030588:intron 40.0%
!! TGCTTTGAGGCTTCTTAACA+TGG - chr4.2:8701403-8701422 MS.gene030588:intron 40.0%
!!! CACCAACTAGTTTTGTCGAT+AGG - chr4.2:8699218-8699237 MS.gene030588:CDS 40.0%
!!! GCTTTGTTTTCCTCTCAGAT+AGG - chr4.2:8698651-8698670 MS.gene030588:CDS 40.0%
ACCTACACATCAGCTTGGTT+CGG + chr4.2:8698838-8698857 None:intergenic 45.0%
ACTGAACCTACACATCAGCT+TGG + chr4.2:8698843-8698862 None:intergenic 45.0%
AGAGCTTAGGTGTGTGTCTA+TGG - chr4.2:8697146-8697165 MS.gene030588:intron 45.0%
CCACTTAGTGGGATAAAGCT+TGG - chr4.2:8697962-8697981 MS.gene030588:intron 45.0%
CTTCATGGTTTCGTTCAGGA+AGG - chr4.2:8698745-8698764 MS.gene030588:intron 45.0%
GACTCTTCATGGTTTCGTTC+AGG - chr4.2:8698741-8698760 MS.gene030588:intron 45.0%
GATCAGTGACACATACTGCA+TGG - chr4.2:8700676-8700695 MS.gene030588:intron 45.0%
GATGTGTAGGTTCAGTGTAC+CGG - chr4.2:8698847-8698866 MS.gene030588:CDS 45.0%
GCAAAAAGGAAGCAAGTGGA+CGG + chr4.2:8701362-8701381 None:intergenic 45.0%
GCACACTTCAATCCAAGGAA+AGG + chr4.2:8698274-8698293 None:intergenic 45.0%
GCATCCCAAACCAATTCCAA+AGG + chr4.2:8696556-8696575 None:intergenic 45.0%
GCATTGTCGAGAATAGTGAG+TGG - chr4.2:8696970-8696989 MS.gene030588:intron 45.0%
GGGGCAAACTATTAGTGGTT+TGG + chr4.2:8698812-8698831 None:intergenic 45.0%
GGGTTATCATACTAGGAAGC+TGG - chr4.2:8700865-8700884 MS.gene030588:intron 45.0%
GGTAACATCAACGCACTACT+AGG + chr4.2:8696813-8696832 None:intergenic 45.0%
TACAGCTTCGCTGACACAAA+AGG - chr4.2:8699534-8699553 MS.gene030588:intron 45.0%
TAGAATGAGACTATCGCCGT+CGG + chr4.2:8700052-8700071 None:intergenic 45.0%
TATACCCTCACCTATCTGAG+AGG + chr4.2:8698664-8698683 None:intergenic 45.0%
TGCAAGGAATAGGCTTCCTT+TGG - chr4.2:8696537-8696556 MS.gene030588:intron 45.0%
TTGGAGCACACTTCAATCCA+AGG + chr4.2:8698279-8698298 None:intergenic 45.0%
TTTATCCCACTAAGTGGGGT+CGG + chr4.2:8697959-8697978 None:intergenic 45.0%
! AAAAGCCGCTACCCGAATTT+TGG - chr4.2:8700093-8700112 MS.gene030588:intron 45.0%
! ATTTTCGTTCATCCTAGGCC+AGG - chr4.2:8697638-8697657 MS.gene030588:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + chr4.2:8697965-8697984 None:intergenic 45.0%
! CTCTGTTGGACAGTCTGTTT+TGG - chr4.2:8701799-8701818 MS.gene030588:intron 45.0%
! GAAATGTGCTAGAGAGCGTA+AGG + chr4.2:8699264-8699283 None:intergenic 45.0%
! GCTTGTCTCTTTTATGCCGA+CGG - chr4.2:8700033-8700052 MS.gene030588:intron 45.0%
! GTTTTCCTCTCAGATAGGTG+AGG - chr4.2:8698656-8698675 MS.gene030588:CDS 45.0%
! TTTTCGTTCATCCTAGGCCA+GGG - chr4.2:8697639-8697658 MS.gene030588:intron 45.0%
!! GGCTTCCTTTGGAATTGGTT+TGG - chr4.2:8696548-8696567 MS.gene030588:intron 45.0%
!! TTACTAGGACTGCTGCTTTG+AGG - chr4.2:8701390-8701409 MS.gene030588:intron 45.0%
!!! TGGTGGTGGTGCTTTGTTTT+GGG - chr4.2:8696407-8696426 MS.gene030588:intron 45.0%
!!! TTGGTGGTGGTGCTTTGTTT+TGG - chr4.2:8696406-8696425 MS.gene030588:intron 45.0%
AAGTCACTGGATGCCATCCA+CGG + chr4.2:8700731-8700750 None:intergenic 50.0%
ACCGAACCAAGCTGATGTGT+AGG - chr4.2:8698834-8698853 MS.gene030588:CDS 50.0%
ACTCTGCTTGTATCAGCCAC+TGG + chr4.2:8701858-8701877 None:intergenic 50.0%
AGCTTCGCTGACACAAAAGG+AGG - chr4.2:8699537-8699556 MS.gene030588:intron 50.0%
ATCGTCCTCCACTACAACCT+TGG + chr4.2:8699768-8699787 None:intergenic 50.0%
CCTCAAAGAAGGGATGCTAG+AGG + chr4.2:8696929-8696948 None:intergenic 50.0%
CCTCTAGCATCCCTTCTTTG+AGG - chr4.2:8696926-8696945 MS.gene030588:intron 50.0%
GAAGCATGCCAAGGTTGTAG+TGG - chr4.2:8699757-8699776 MS.gene030588:intron 50.0%
GCCAGGGTTTGTGTTGAATG+AGG - chr4.2:8697655-8697674 MS.gene030588:intron 50.0%
GCCTCATTCAACACAAACCC+TGG + chr4.2:8697659-8697678 None:intergenic 50.0%
GGGTGAAGCAAGCATGATAG+AGG - chr4.2:8698580-8698599 MS.gene030588:intron 50.0%
GGTTCGGGGCAAACTATTAG+TGG + chr4.2:8698817-8698836 None:intergenic 50.0%
TACAACCTTGGCATGCTTCC+TGG + chr4.2:8699756-8699775 None:intergenic 50.0%
TCCCTCCAAAATTCGGGTAG+CGG + chr4.2:8700101-8700120 None:intergenic 50.0%
TTCAACACAAACCCTGGCCT+AGG + chr4.2:8697653-8697672 None:intergenic 50.0%
!! ACATCAGCTTGGTTCGGTTC+GGG + chr4.2:8698832-8698851 None:intergenic 50.0%
!! CACATCAGCTTGGTTCGGTT+CGG + chr4.2:8698833-8698852 None:intergenic 50.0%
!! GGTTCAGTGTACCGGTTATG+TGG - chr4.2:8698855-8698874 MS.gene030588:CDS 50.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4.2:8697951-8697970 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr4.2:8697950-8697969 MS.gene030588:intron 55.0%
GCATGCCAAGGTTGTAGTGG+AGG - chr4.2:8699760-8699779 MS.gene030588:intron 55.0%
TCAGCAGGCTGCGCAAAGAA+AGG + chr4.2:8700346-8700365 None:intergenic 55.0%
TGGATCTTGGACGTGTCAGC+AGG + chr4.2:8700361-8700380 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr4.2:8697951-8697970 MS.gene030588:intron 55.0%
! AGCCGCTACCCGAATTTTGG+AGG - chr4.2:8700096-8700115 MS.gene030588:intron 55.0%
! GCCGCTACCCGAATTTTGGA+GGG - chr4.2:8700097-8700116 MS.gene030588:intron 55.0%
!! CATCAGCTTGGTTCGGTTCG+GGG + chr4.2:8698831-8698850 None:intergenic 55.0%
! GCTGACCAGGAAGCATGCCA+AGG - chr4.2:8699748-8699767 MS.gene030588:intron 60.0%
!! GCGCTCACGATCTCTGGAGT+TGG + chr4.2:8700709-8700728 None:intergenic 60.0%
TCCACGGCGCTCACGATCTC+TGG + chr4.2:8700715-8700734 None:intergenic 65.0%
! GAGATCGTGAGCGCCGTGGA+TGG - chr4.2:8700715-8700734 MS.gene030588:intron 65.0%
! TCCAGAGATCGTGAGCGCCG+TGG - chr4.2:8700711-8700730 MS.gene030588:intron 65.0%
!! TGCAGTGGGCTGTGCTGACC+AGG - chr4.2:8699735-8699754 MS.gene030588:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 8696352 8702099 8696352 ID=MS.gene030588
chr4.2 mRNA 8696352 8702099 8696352 ID=MS.gene030588.t1;Parent=MS.gene030588
chr4.2 exon 8701866 8702099 8701866 ID=MS.gene030588.t1.exon1;Parent=MS.gene030588.t1
chr4.2 CDS 8701866 8702099 8701866 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8700721 8700834 8700721 ID=MS.gene030588.t1.exon2;Parent=MS.gene030588.t1
chr4.2 CDS 8700721 8700834 8700721 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8699779 8699879 8699779 ID=MS.gene030588.t1.exon3;Parent=MS.gene030588.t1
chr4.2 CDS 8699779 8699879 8699779 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8699212 8699283 8699212 ID=MS.gene030588.t1.exon4;Parent=MS.gene030588.t1
chr4.2 CDS 8699212 8699283 8699212 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8698831 8698912 8698831 ID=MS.gene030588.t1.exon5;Parent=MS.gene030588.t1
chr4.2 CDS 8698831 8698912 8698831 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8698631 8698711 8698631 ID=MS.gene030588.t1.exon6;Parent=MS.gene030588.t1
chr4.2 CDS 8698631 8698711 8698631 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8698321 8698359 8698321 ID=MS.gene030588.t1.exon7;Parent=MS.gene030588.t1
chr4.2 CDS 8698321 8698359 8698321 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8698028 8698093 8698028 ID=MS.gene030588.t1.exon8;Parent=MS.gene030588.t1
chr4.2 CDS 8698028 8698093 8698028 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8697657 8697806 8697657 ID=MS.gene030588.t1.exon9;Parent=MS.gene030588.t1
chr4.2 CDS 8697657 8697806 8697657 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8697027 8697155 8697027 ID=MS.gene030588.t1.exon10;Parent=MS.gene030588.t1
chr4.2 CDS 8697027 8697155 8697027 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
chr4.2 exon 8696352 8696408 8696352 ID=MS.gene030588.t1.exon11;Parent=MS.gene030588.t1
chr4.2 CDS 8696352 8696408 8696352 ID=cds.MS.gene030588.t1;Parent=MS.gene030588.t1
Gene Sequence

>MS.gene030588

ATGAAGAAGAAAGTGGTTCAGCAGAAATGGAAGAAGAAGGTTTTTGCTTTGATTTTGGTGGTGGTGCTTTGTTTTGGGAGTTTGTTGTTTATGCAGATGCGGTATACTCATGTTTTGGGGCTTGTTTCATTGCAACATCAACTTGTTTCTCAAGTTCAGAAGCCTAAGATTGCTTTTCTCTTCATTGCAAGGAATAGGCTTCCTTTGGAATTGGTTTGGGATGCATTCTTTAGGGTATACTCTTTTTCTCTTTCAATTATTATTTTGTTTCTATTTGTTTTTTGGAATTTTGTGTATGTGTGTGTGTGTGTACTTGGTGATTAATAGGAGGCTTAATTAGAAACTAAAGTAGAGTGCATCAATTGTGCTTAGTTTCAGCTTTAATGATTAATCAAAGCCTATATGTTTCTTTTTCCAGATTCAGAACTTGTAACACTTTGAGCTATCGTTGCATAGTTCCTAGTAGTGCGTTGATGTTACCTTTTTTATAGGCAAATGTTAGTGGTTGTTTTATTAAGGGGAAATGAAATTTGTTAGTAGAAGGAATCGAACCTAGATCCTCGTTCGTAATATTCCTCTAGCATCCCTTCTTTGAGGATGTGTTGATGTTACTTGAATGCATTGTCGAGAATAGTGAGTGGTGTAAATTTAGTAACTTCAATAATATGTTTTAAATCATGATGTGCATTTAGCAATCATTGATTAGTGCAGTGTAGGGACAATTGTTTATGGTAAGATAATATGGTTCGATACGCTTTACATTGATAAACTTAATAGTAGTTTTTACTTTTTGGAGAGCTTAGGTGTGTGTCTATGGAGTTCTATCAGAAGGAAATTTTGATTCCTTTTAAATACACAGTTATGTCCTTTGGGGATGAACTAGAATCTAGAACATTGCTTGATTGAGTATTTAAGTGACTTGGTTCTTCCCTCTTGATAGCTAGCTTTTAAGAGAGGGTTTCCCAAGTGCTTTGATACTTGTCATCCTCTTCTTTGGAATAATGATTTTGAAAAGAGCAATTTTACCTCGCTTGTCATAACAACATTTCTAATAATTAACGCAAGCTTCCATAACTTATTGACCATATGTTAAGAGACTCCCCTTTAGCTAAATTATTGTGGAAGTGTTCATAATAGATGTGTAGTTGTTGATTCTCATTAATGTTTGTTGCGTAAATGTAAATGTTTGCAATTTCATAGAATGCTAGTTGTGGAAATGTTGAGGTGCAGTAATGGTTACAGAAACATTTGTATTGCATTTTCAGGGAGGCGATAACAATTTCTCAATTTTCGTTCATCCTAGGCCAGGGTTTGTGTTGAATGAGGCAACAACTAGATCATCATATTTTTTGAATCGTCAAGTTAATGATAGCATACAGGTTCCTCTTCTCTCGTTGTTTGAAACATAATTTGTTTTTTGTTATCAACCATGTCCATTTACTATCTTATGTGTTGGAATCAATAAGCTGTTATAGTTGACTGGGTAGAGGAAGACCTAGAAAAACTATATAGAGAAACTATTAGGAAAGATCTAGAGATTAATGAGTTGGATAGAAATAAGAAACTATTTGGTAGAATATTATGGCGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAAGCTTGGTTGTTGTTGTAGTTGACTTAGGCCTGTTTGAATCGACTTATTTGAACTTATCTACTGCCATAAACGCTTGTGAGATTGAATGAGAGAACTTAGGAAAACAGCTTAAGACATGTCCCTAAGTTGTTATCAGCTTTTTTTCATAAGCTCTTCTGTATAATTTATGGAAATAGCTTATAGCCTATATGAAAGAAGTTTGACTTTATTTGATCTTTTGGTATAAAAATAGTTTAGACATAAGCAATGCTTAATTAATCTGTTTATCCAAACAGGGGTTTAATGTTACATTCCTTTCCTTGGATTGAAGTGTGCTCCAACTATGAAGTTCTATAGTCTAATTTTTATGTGTTTATTTATCACATGGAAAACACTGTTAATATAGTTATTTTGACTCAAACACAGTTAATATAGTTACTTATTGAAATAATCTCATTTTATCGGCTGATCTCTATCTTACTCTCATCTATGAACTATTTGCTTATACCATGTTTAAAACATCAAAAGAAAAAGTGTTTCAATTTACTAAACTGTAATATGATTTTGTTATGTTTATACCTTCATGATATTTAGTTAACATGATCTTTTTGCAGATAGATTGGGGTGAAGCAAGCATGATAGAGGCCGAGCGAATTTTACTTAGACATGCTCTTGATGATCCTCTAAATGACCGCTTTGTTTTCCTCTCAGATAGGTGAGGGTATAATTTTGTTAACAACCATAAACTTCAATCATTATATAAGTACTCTCCACTTACTATAGGACTCTTCATGGTTTCGTTCAGGAAGGAAAACCGAACTGAATTGTTCATAAAGTTTGGTAAAATTGAACCAAACCACTAATAGTTTGCCCCGAACCGAACCAAGCTGATGTGTAGGTTCAGTGTACCGGTTATGTGGTTTCGTACCAAACTAAATTTTTTTGAAACCAAATGATTCTTTGTGAGGACTGTTGGAAAAAAAAACGAAAAACCAAACCAAATCGAATATTAGAACTGTTTTGAAAAAGCAAAAAACTGAGCTGGACCGTGAAACAAAACTGATAACTAGGGTTCAATTTTTTATTTTTTTCAACAGTTCTACTTACCATACGTTGCTTAATTATATGGTAGAAGAAAAATGATAACTGATGTTTCTCAAGTTTTGAGCTAGCACCTTACTATATTTCAGTTGATTGATTTTCTTTTCAGCTGTATACCTTTATACAACTTCAGCTACACATATGACTACATCATGTCAACACCAACTAGTTTTGTCGATAGGTGAGTTAATATACACACTTGCCTTACGCTCTCTAGCACATTTCAATAAAGCTCCATATATATACGACATTAATCTTGACACGTTTCAATAACGTATCAGATGATTTTTAGATTTATGTAAAAATTTACAGAGATGATGTATGTTATATAAACTTTCAATCCCAACAATTAGTTTTGTTAAATACATATTGAGTAAAACGTCATCAAAGTTACTTGTTACTATTTATTTATGCCTTTGTAGTTAATTATTCATTTGCAACAATATAATTGTTATGAATTTATCATTAAAATATGTACAGCTTCGCTGACACAAAAGGAGGTCGTTACAATCCAAAAATGGATCCAGTTATTCCAGTTTATAACTGGAGAAAAGGATCTCAGGTAAAAAAATCTAATGTAATGCGTCGTTTACTATAAGTTCATTCTAAATCTTAAAATACAACACATTCATTGTCAAAGATTACCATCTTATACCTATCTTTTTATGAATTCTTCTGCAGTGGGCTGTGCTGACCAGGAAGCATGCCAAGGTTGTAGTGGAGGACGATACTGTCTTTCCAATGTTTCAAAAATTTTGCAAGGTACTTCCTCCTTCTTATATTATGTGTCTCAATTGGAACATGCACATATCTTACGAAAATGATTAATGATACGAATTTTCAATGCAATATCCTTTTGCTTCATTTATTATTTCTCCATCATATACTCTCATGGTTTTCACAAATAATATGCCATTAAATGTTATAAAACCCAATCTTTCTTCCATTTAGTGTTTTTTATTCCATACATTTGTGCTTGTCTCTTTTATGCCGACGGCGATAGTCTCATTCTACTTTTCATCTCTAAATGCAGAAAAAGCCGCTACCCGAATTTTGGAGGGATCAAGTCATTGTAAGTGCTCTATGTAGTATCTACAAACAAAGTTATATAATAATTTATTTATTTTATAACATTAGCTTCAATTAGTCACTTTTCTTAATAAAATCATAAATTCTGCTCAGAAAAATGTCTGATTCAATATTTCATTCTGAATTGGTACATGATGTCAATTAGGTTCGTAGGAATTATATGAACAAATGAAGTAACGATTTTTTAATACATCTCCTTTCTTTGCGCAGCCTGCTGACACGTCCAAGATCCACAACTGTATACCAGATGAACACTATGTTCAAACATTGCTGGCTGTAAGAATCTCTTTCCTTTCTGTGAACACTGTTGCATTTCTTTCAAGTTGAATATAAAACATCTTTTGAAAAACAGACAGTTAAAGAAATCGAAGAAAATACATTGCATCTATTTTAAACTTTATGATGTTGTTGTTTAATTTTACAAATATTTTTACGCGATCACCCTGGTTTTGCTTTAATATTTTTTTTACTGTTTGTGTTTTTCTTCCCAAATCTAGCAAAAAGACCTCGAAAAAGAACTAACACGAAGATCAGTGACACATACTGCATGGGATATTTCCAACTCCAGAGATCGTGAGCGCCGTGGATGGCATCCAGTGACTTATAAGTTCTCAGATGCTACTCCGATGCTTATTAAATTTATAAAGGTTTGACATGTACTGCACTACCACTGCAAAATCACTTTCTTGAATCAACTTTCATTCTGTGATAATAATAGGGTTATCATACTAGGAAGCTGGAGACATTATAGAATATATTAATAATTAATATTTTGTTAGAATGGTACTTGATAATGATAGGAATCAGTACATATCAGCATATATAAACTAATAAAAGCAAGGTGTGAGATTCTGTCGAGAAAAAAAAAAAAAAAGCAAGGTGTGAGATTTTGGTTATTATAGCTAAGAAAATTCCTTGATCCTGCTCCTAATAAATTCTGAATCTTAATTTTGATTTCCGTCAGTCAACTAATGAAAGATACATTAAAAGAGCAATTAGCGTAGCAGAAATTTTAACAAATTGTTATTACTCTGCAATAAGTTGTTTAGTTCTAAGTCTTGTTAAATAGCGGCTATAGTATAAAGTTCATGTATTCTACTTTGATGTAAGAAAATATGTGTAAGTTTGATTTATTTTTTTTTTTGTAGGAAATAGATAATATTTATTACGAGACTGAATACCGAAGAGAATGGTGTACAAGCAAGGGTAAACCGTCCACTTGCTTCCTTTTTGCAAGAAAGTTTACTAGGACTGCTGCTTTGAGGCTTCTTAACATGGTAAGTTCATATATCATAGGGTTTTCTTGATGAGTGATTGTGAGCTTTCAAATATTTTTACGTAAACTAGATCATTTTTTAGTTTCTTCGATTTGATTGGTTTATTTGAGTTTATCGACCGACATAAACACCTTTAGACTGTTTGAAAGAGCTTATGAATAAAGCTTGTGATATGTCAATAATCTTTTTTCAGCTTATTTTCATAAGCTTGCCAAGGTAGCCTATGAAACATAGTTTGACTTTATTTTATCTTTTGTTATAGAAATAGTCAATACATAACCACTAATATGATAAGCACTTATGCTATAAATGCTTAATTGAGTTATTTATCTAAACAAGGTCTCTCTGCCGAGATTGTTACTTATTTTCTGATTCTCTGTTGGACAGTCTGTTTTGGGAGATTTCAGTTAAAAGAACAAAATGCTTATTGCCAGTGGCTGATACAAGCAGAGTAGAACATGTACTTAGTAAAGAAATAAGATCGAGAAAAGAGAATAAAGCAAAAGCAGTTGAAGATTATTGACTGCTACACCGATATTGTATTGTACATTTAGACAGTTAAAATGAGTGCTTGTGTATTGTGATGTATATGTTCTAATTTTTTATTTTATTTTTCAGAATAATTTTGACAACAATCTTGCAAGACAGTCCCTCATTATAAAAAATAATAGTTGA
Protein sequence

>MS.gene030588.t1

MKKKVVQQKWKKKVFALILVVVLCFGSLLFMQMRYTHVLGLVSLQHQLVSQVQKPKIAFLFIARNRLPLELVWDAFFRGGDNNFSIFVHPRPGFVLNEATTRSSYFLNRQVNDSIQIDWGEASMIEAERILLRHALDDPLNDRFVFLSDSCIPLYNFSYTYDYIMSTPTSFVDSFADTKGGRYNPKMDPVIPVYNWRKGSQWAVLTRKHAKVVVEDDTVFPMFQKFCKKKPLPEFWRDQVIPADTSKIHNCIPDEHYVQTLLAQKDLEKELTRRSVTHTAWDISNSRDRERRGWHPVTYKFSDATPMLIKFIKEIDNIYYETEYRREWCTSKGKPSTCFLFARKFTRTAALRLLNMNNFDNNLARQSLIIKNNS