AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059286

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059286.t1 MTR_2g087610 98.098 368 7 0 1 368 1 368 0.0 734
MS.gene059286.t1 MTR_1g048320 50.546 366 147 9 7 368 9 344 2.30e-104 311
MS.gene059286.t1 MTR_1g031080 61.864 236 86 1 133 368 61 292 4.11e-101 301
MS.gene059286.t1 MTR_1g031060 56.757 296 115 4 75 368 78 362 3.93e-98 296
MS.gene059286.t1 MTR_3g106930 47.419 310 117 4 78 368 95 377 6.02e-88 270
MS.gene059286.t1 MTR_1g110290 35.216 301 148 11 78 365 125 391 2.54e-41 150
MS.gene059286.t1 MTR_2g037600 30.915 317 155 11 75 360 103 386 4.38e-39 143
MS.gene059286.t1 MTR_8g015500 34.564 298 155 10 78 365 144 411 4.90e-39 144
MS.gene059286.t1 MTR_3g108740 31.629 313 148 11 78 358 93 371 4.18e-38 140
MS.gene059286.t1 MTR_1g009960 30.650 323 160 11 66 358 102 390 1.15e-37 140
MS.gene059286.t1 MTR_5g055480 34.448 299 152 11 78 365 123 388 1.35e-37 139
MS.gene059286.t1 MTR_1g016880 33.333 300 157 10 78 366 107 374 3.19e-37 138
MS.gene059286.t1 MTR_2g005350 32.194 351 186 11 34 365 119 436 5.14e-37 139
MS.gene059286.t1 MTR_1g009960 32.609 276 145 10 66 334 102 343 1.03e-36 137
MS.gene059286.t1 MTR_4g127550 29.677 310 157 10 78 358 108 385 3.22e-36 135
MS.gene059286.t1 MTR_6g083830 32.886 298 160 10 78 365 150 417 5.93e-36 135
MS.gene059286.t1 MTR_2g037620 30.094 319 156 12 73 360 95 377 1.02e-35 134
MS.gene059286.t1 MTR_5g006930 32.653 294 158 9 78 361 117 380 1.49e-35 134
MS.gene059286.t1 MTR_5g006920 31.987 297 164 9 78 365 152 419 2.63e-33 128
MS.gene059286.t1 MTR_2g024120 31.288 326 153 9 78 359 62 360 2.01e-32 125
MS.gene059286.t1 MTR_3g104840 31.525 295 150 8 74 361 138 387 2.20e-31 122
MS.gene059286.t1 MTR_8g094180 30.031 323 147 10 78 349 56 350 2.29e-24 102
MS.gene059286.t1 MTR_8g094180 31.206 282 138 9 78 331 56 309 3.96e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059286.t1 AT5G22070 62.667 375 120 7 1 368 1 362 3.85e-162 458
MS.gene059286.t1 AT3G52060 54.655 333 127 5 36 368 38 346 2.45e-120 352
MS.gene059286.t1 AT5G25330 48.684 304 121 6 78 368 81 362 4.62e-87 268
MS.gene059286.t1 AT4G32290 43.733 375 141 9 36 368 33 379 1.35e-82 256
MS.gene059286.t1 AT4G31350 33.968 315 151 10 71 358 82 366 7.33e-45 158
MS.gene059286.t1 AT4G31350 33.968 315 151 10 71 358 82 366 7.33e-45 158
MS.gene059286.t1 AT4G31350 33.968 315 151 10 71 358 82 366 7.33e-45 158
MS.gene059286.t1 AT4G31350 33.968 315 146 11 71 358 82 361 6.04e-44 156
MS.gene059286.t1 AT3G21310 33.784 296 159 9 78 365 115 381 1.05e-41 150
MS.gene059286.t1 AT3G21310 33.784 296 159 9 78 365 115 381 1.05e-41 150
MS.gene059286.t1 AT1G51770 35.235 298 152 11 78 365 124 390 1.57e-41 150
MS.gene059286.t1 AT5G25970 36.054 294 147 11 78 361 119 381 5.78e-41 148
MS.gene059286.t1 AT5G25970 36.054 294 147 11 78 361 119 381 5.78e-41 148
MS.gene059286.t1 AT5G25970 36.054 294 147 11 78 361 119 381 5.78e-41 148
MS.gene059286.t1 AT1G10280 33.775 302 152 12 78 365 143 410 1.23e-40 148
MS.gene059286.t1 AT4G25870 32.803 314 148 12 78 360 99 380 1.00e-38 142
MS.gene059286.t1 AT2G19160 32.797 311 147 11 78 358 106 384 2.13e-38 142
MS.gene059286.t1 AT2G19160 32.797 311 147 11 78 358 106 384 2.13e-38 142
MS.gene059286.t1 AT1G68390 34.106 302 152 13 78 365 138 406 3.63e-37 139
MS.gene059286.t1 AT4G30060 30.769 312 156 9 78 360 109 389 4.55e-37 138
MS.gene059286.t1 AT4G30060 30.769 312 156 9 78 360 109 389 4.55e-37 138
MS.gene059286.t1 AT5G57270 33.969 262 132 10 78 331 98 326 9.35e-37 137
MS.gene059286.t1 AT5G57270 33.969 262 132 10 78 331 98 326 9.35e-37 137
MS.gene059286.t1 AT5G57270 33.969 262 132 10 78 331 98 326 9.35e-37 137
MS.gene059286.t1 AT5G57270 33.969 262 132 10 78 331 98 326 9.35e-37 137
MS.gene059286.t1 AT5G57270 33.969 262 132 10 78 331 98 326 9.35e-37 137
MS.gene059286.t1 AT5G11730 32.886 298 159 10 78 365 118 384 2.97e-36 135
MS.gene059286.t1 AT5G16170 31.410 312 168 10 69 365 127 407 3.36e-35 133
MS.gene059286.t1 AT1G10880 30.395 329 175 11 43 361 96 380 7.62e-34 129
MS.gene059286.t1 AT1G68380 33.444 302 154 11 78 366 124 391 4.95e-33 127
MS.gene059286.t1 AT1G11940 31.034 348 168 10 48 352 46 364 2.29e-30 120
MS.gene059286.t1 AT1G62305 31.832 333 154 12 78 365 69 373 1.38e-29 117
MS.gene059286.t1 AT1G51770 31.544 298 136 11 78 365 124 363 1.49e-29 117
MS.gene059286.t1 AT5G14550 31.802 283 154 9 78 347 65 321 7.84e-29 115
MS.gene059286.t1 AT5G14550 30.599 317 150 11 78 350 65 355 6.89e-27 110
MS.gene059286.t1 AT5G14550 30.284 317 151 10 78 350 65 355 7.16e-27 110
MS.gene059286.t1 AT1G73810 31.250 304 163 12 76 365 145 416 4.54e-26 108
MS.gene059286.t1 AT1G62305 34.468 235 108 7 78 294 69 275 7.08e-25 103
MS.gene059286.t1 AT1G11940 32.759 232 125 5 48 277 46 248 1.46e-22 96.3
MS.gene059286.t1 AT5G14550 29.900 301 146 11 78 350 65 328 2.77e-21 94.0
MS.gene059286.t1 AT3G21310 32.099 162 84 5 78 239 115 250 3.14e-15 75.5

Find 115 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAAAGTTAGAAGATA+TGG 0.207439 2.2:-11514798 None:intergenic
GGAAGAGAGATGAAAGAATT+TGG 0.208741 2.2:-11514979 None:intergenic
GACATTGTGGAGGAAGTTTA+AGG 0.229533 2.2:+11515580 MS.gene059286:CDS
ATCTTTGAAAATAACAGATT+TGG 0.276902 2.2:-11515867 None:intergenic
ACATGCTTTGGTTGTTGTTA+AGG 0.308207 2.2:+11515553 MS.gene059286:CDS
TAAACATTGAATAATTTAGA+TGG 0.309104 2.2:-11515092 None:intergenic
GAGGATTCTGATGGTGTTAC+TGG 0.315065 2.2:+11515668 MS.gene059286:CDS
ATAATTTAGATGGGGTTCTT+TGG 0.332419 2.2:-11515082 None:intergenic
TTGCGAAAGAACGATGAAAT+AGG 0.342037 2.2:-11515282 None:intergenic
AATTGGACTGGGACTGTTAA+TGG 0.353305 2.2:+11515710 MS.gene059286:CDS
ATTTCAACCGAACACCGAAT+TGG 0.361586 2.2:-11515391 None:intergenic
ATACACTTACCAATGTGAAT+TGG 0.369149 2.2:+11515693 MS.gene059286:CDS
GAGAGAAAGTTAGAAGATAT+GGG 0.398505 2.2:-11514797 None:intergenic
TTTCAACCGAACACCGAATT+GGG 0.399194 2.2:-11515390 None:intergenic
GAAATTTGTTCCTGATTGCT+TGG 0.406788 2.2:+11515826 MS.gene059286:CDS
TACGTTTGATTTAACCGATT+CGG 0.406838 2.2:+11515361 MS.gene059286:CDS
CGTTTGAGAAATTTCGTGTT+GGG 0.409497 2.2:+11515504 MS.gene059286:CDS
GGTTGTAACTGTTGCTTAAA+CGG 0.411781 2.2:-11515151 None:intergenic
TCAACAATGGACCTAGGTTA+TGG 0.412678 2.2:+11515435 MS.gene059286:CDS
AATCGACCCAATTCGGTGTT+CGG 0.414363 2.2:+11515384 MS.gene059286:CDS
GGAGCGAGAAAGAAGAGAAT+TGG 0.415517 2.2:-11514834 None:intergenic
GATTCGGAATCGACCCAATT+CGG 0.415724 2.2:+11515377 MS.gene059286:CDS
AGTTCATCGGTAGGGGAGAT+TGG 0.417480 2.2:-11514888 None:intergenic
TTTGACAAGAAAACATGCTT+TGG 0.419279 2.2:+11515541 MS.gene059286:CDS
TGATTGCTTGGAACCATTGA+TGG 0.426338 2.2:+11515838 MS.gene059286:CDS
AATTTCTCAAACGGAACTTC+CGG 0.431140 2.2:-11515494 None:intergenic
AGGGGTGTGAAGAGGAAGAA+GGG 0.436253 2.2:-11514956 None:intergenic
ATCAATGGTTCCAAGCAATC+AGG 0.437224 2.2:-11515836 None:intergenic
GCAATCAGGAACAAATTTCC+TGG 0.437708 2.2:-11515822 None:intergenic
GGATGAGGTGGGAGAATAGC+AGG 0.455239 2.2:-11514855 None:intergenic
GATTCCAGAGAGGAGTGAAA+TGG 0.458491 2.2:-11515052 None:intergenic
AAACATTGAATAATTTAGAT+GGG 0.466588 2.2:-11515091 None:intergenic
GTTGAGAAAGTCGAATAATT+CGG 0.467142 2.2:+11515784 MS.gene059286:CDS
GACGGTACAAATTTGAAGAT+GGG 0.469772 2.2:-11515173 None:intergenic
GAGGGGTGTGAAGAGGAAGA+AGG 0.470582 2.2:-11514957 None:intergenic
AGACGGTACAAATTTGAAGA+TGG 0.472395 2.2:-11515174 None:intergenic
CCGTTTGAGAAATTTCGTGT+TGG 0.473342 2.2:+11515503 MS.gene059286:CDS
GGGTGTGAAGAGGAAGAAGG+GGG 0.474839 2.2:-11514954 None:intergenic
ATCTCCATTTCACTCCTCTC+TGG 0.475406 2.2:+11515048 MS.gene059286:CDS
GGGGTGTGAAGAGGAAGAAG+GGG 0.477919 2.2:-11514955 None:intergenic
ATTGGAATGGGAGAAGGATG+AGG 0.491453 2.2:-11514870 None:intergenic
CTTACCAATGTGAATTGGAC+TGG 0.493929 2.2:+11515698 MS.gene059286:CDS
AGAGAATTGGAAGGGAGAGA+AGG 0.496455 2.2:-11514821 None:intergenic
GGCGCGTGAGGTTCACGCGC+GGG 0.500181 2.2:-11515127 None:intergenic
AATTATTCGACTTTCTCAAC+CGG 0.502661 2.2:-11515781 None:intergenic
CGTGAGGTTCACGCGCGGGT+CGG 0.504342 2.2:-11515123 None:intergenic
GATCGGTGTTTGTGAGGAAA+AGG 0.508484 2.2:-11515028 None:intergenic
TCGGTAGGGGAGATTGGAAT+GGG 0.511554 2.2:-11514882 None:intergenic
TATAATCAAATGAATGAAGA+GGG 0.512645 2.2:-11515313 None:intergenic
GATTTGGCAATACCCATCAA+TGG 0.512678 2.2:-11515851 None:intergenic
GGATCGCAGAAGCAAGTAAA+CGG 0.513510 2.2:-11515241 None:intergenic
TCCTACGTTGTTGTCTATGG+AGG 0.514638 2.2:+11515649 MS.gene059286:CDS
GTAGGAAAATAATGTTCCTC+AGG 0.514706 2.2:-11515632 None:intergenic
GGGGAGATTGGAATGGGAGA+AGG 0.515428 2.2:-11514876 None:intergenic
TGCTTAAACGGAGGCGCGTG+AGG 0.518064 2.2:-11515139 None:intergenic
TCCTCCGGCTGATACGTATG+AGG 0.524726 2.2:-11515737 None:intergenic
GGTTCACGCGCGGGTCGGAA+TGG 0.525568 2.2:-11515118 None:intergenic
CTTTGGTTGTTGTTAAGGAT+AGG 0.527282 2.2:+11515558 MS.gene059286:CDS
CGCGTGGCGGAGATTAAAGT+GGG 0.528482 2.2:-11515218 None:intergenic
ATCGGTAGGGGAGATTGGAA+TGG 0.533197 2.2:-11514883 None:intergenic
GAGAGATGAAAGAATTTGGA+GGG 0.534851 2.2:-11514975 None:intergenic
GCGCGTGGCGGAGATTAAAG+TGG 0.534851 2.2:-11515219 None:intergenic
GAATGGGAGAAGGATGAGGT+GGG 0.535379 2.2:-11514866 None:intergenic
AGAGAGATGAAAGAATTTGG+AGG 0.536586 2.2:-11514976 None:intergenic
CGAGAAAGAAGAGAATTGGA+AGG 0.537558 2.2:-11514830 None:intergenic
TTGTTAAGGATAGGACATTG+TGG 0.540935 2.2:+11515567 MS.gene059286:CDS
GAATTTGGAGGGGTGTGAAG+AGG 0.541017 2.2:-11514964 None:intergenic
CACTCATCATCACGGTAACA+AGG 0.544806 2.2:-11515605 None:intergenic
AAGAACGATGAAATAGGCAT+TGG 0.544970 2.2:-11515276 None:intergenic
CCAACACGAAATTTCTCAAA+CGG 0.545393 2.2:-11515503 None:intergenic
TGGACGTTACGCGATGATGC+CGG 0.547095 2.2:+11515475 MS.gene059286:CDS
TTTATTGAAATTATCAACAA+TGG 0.555157 2.2:+11515422 MS.gene059286:CDS
GAATTGGGTCGATTCCGAAT+CGG 0.559523 2.2:-11515375 None:intergenic
GTGAAATAGCGGTGTTGAAG+AGG 0.564970 2.2:-11514923 None:intergenic
AACATTGAATAATTTAGATG+GGG 0.567177 2.2:-11515090 None:intergenic
TTGTCTATGGAGGATTCTGA+TGG 0.567511 2.2:+11515659 MS.gene059286:CDS
CCATCCTCATACGTATCAGC+CGG 0.571067 2.2:+11515733 MS.gene059286:CDS
ACGGTACAAATTTGAAGATG+GGG 0.571190 2.2:-11515172 None:intergenic
GGAATGGGAGAAGGATGAGG+TGG 0.575287 2.2:-11514867 None:intergenic
TGTCATCGAGTTCATCGGTA+GGG 0.579446 2.2:-11514896 None:intergenic
GTCATCGAGTTCATCGGTAG+GGG 0.584228 2.2:-11514895 None:intergenic
ATATAATCAAATGAATGAAG+AGG 0.585845 2.2:-11515314 None:intergenic
GATTGCTTGGAACCATTGAT+GGG 0.586536 2.2:+11515839 MS.gene059286:CDS
AGAGATGAAAGAATTTGGAG+GGG 0.587496 2.2:-11514974 None:intergenic
TGTAACTGTTGCTTAAACGG+AGG 0.591767 2.2:-11515148 None:intergenic
GAGAGGAGTGAAATGGAGAT+CGG 0.592145 2.2:-11515045 None:intergenic
AGAAGCAAGTAAACGGCGCG+TGG 0.594303 2.2:-11515234 None:intergenic
AGCTCCGGTGACACTTCCTC+CGG 0.595229 2.2:-11515752 None:intergenic
CTCAACCGGAGAATAAGCTC+CGG 0.595442 2.2:-11515767 None:intergenic
TGGAAGCGTTACACGGCGCG+TGG 0.597375 2.2:+11515455 MS.gene059286:CDS
GTTGATGTCATCGAGTTCAT+CGG 0.598042 2.2:-11514901 None:intergenic
CCGGCTGATACGTATGAGGA+TGG 0.599049 2.2:-11515733 None:intergenic
AAATTATCAACAATGGACCT+AGG 0.602503 2.2:+11515429 MS.gene059286:CDS
TCAGCCGGAGGAAGTGTCAC+CGG 0.606036 2.2:+11515748 MS.gene059286:CDS
TGTCACCGGAGCTTATTCTC+CGG 0.607381 2.2:+11515762 MS.gene059286:CDS
AGCAAGTAAACGGCGCGTGG+CGG 0.613336 2.2:-11515231 None:intergenic
TTACCAATGTGAATTGGACT+GGG 0.620634 2.2:+11515699 MS.gene059286:CDS
AATGGAGATCGGTGTTTGTG+AGG 0.622749 2.2:-11515034 None:intergenic
GAGAAAGAAGAGAATTGGAA+GGG 0.624337 2.2:-11514829 None:intergenic
GGGTGTAGAATGTGAAATAG+CGG 0.628873 2.2:-11514934 None:intergenic
ATGTCATCGAGTTCATCGGT+AGG 0.629089 2.2:-11514897 None:intergenic
GTGTAACGCTTCCATAACCT+AGG 0.638855 2.2:-11515446 None:intergenic
TAGGTTATGGAAGCGTTACA+CGG 0.639248 2.2:+11515448 MS.gene059286:CDS
AGGCGCGTGAGGTTCACGCG+CGG 0.644011 2.2:-11515128 None:intergenic
TCCTCATACGTATCAGCCGG+AGG 0.654016 2.2:+11515736 MS.gene059286:CDS
TTAAGGATAGGACATTGTGG+AGG 0.656863 2.2:+11515570 MS.gene059286:CDS
AGTCCCAGTCCAATTCACAT+TGG 0.674151 2.2:-11515702 None:intergenic
CAGGATAACACTCATCATCA+CGG 0.676655 2.2:-11515613 None:intergenic
CGTGGCGGAGATTAAAGTGG+GGG 0.678137 2.2:-11515216 None:intergenic
GAATCGGTTAAATCAAACGT+AGG 0.693798 2.2:-11515359 None:intergenic
AGGCATTGGAAGCATCGTCG+AGG 0.706280 2.2:-11515262 None:intergenic
TGGAAGAAGAGATTCCAGAG+AGG 0.707955 2.2:-11515062 None:intergenic
GCGTGGCGGAGATTAAAGTG+GGG 0.740739 2.2:-11515217 None:intergenic
TCCTCCATAGACAACAACGT+AGG 0.744754 2.2:-11515650 None:intergenic
TGATGATGAGTGTTATCCTG+AGG 0.777255 2.2:+11515616 MS.gene059286:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTGAATAATTTAGAT+GGG - chr2.2:11515094-11515113 None:intergenic 15.0%
!! TAAACATTGAATAATTTAGA+TGG - chr2.2:11515095-11515114 None:intergenic 15.0%
!! TTTATTGAAATTATCAACAA+TGG + chr2.2:11515422-11515441 MS.gene059286:CDS 15.0%
!! AACATTGAATAATTTAGATG+GGG - chr2.2:11515093-11515112 None:intergenic 20.0%
!! ATATAATCAAATGAATGAAG+AGG - chr2.2:11515317-11515336 None:intergenic 20.0%
!! TATAATCAAATGAATGAAGA+GGG - chr2.2:11515316-11515335 None:intergenic 20.0%
!!! ATCTTTGAAAATAACAGATT+TGG - chr2.2:11515870-11515889 None:intergenic 20.0%
AAATTATCAACAATGGACCT+AGG + chr2.2:11515429-11515448 MS.gene059286:CDS 30.0%
AATTATTCGACTTTCTCAAC+CGG - chr2.2:11515784-11515803 None:intergenic 30.0%
AGAGAGAAAGTTAGAAGATA+TGG - chr2.2:11514801-11514820 None:intergenic 30.0%
ATAATTTAGATGGGGTTCTT+TGG - chr2.2:11515085-11515104 None:intergenic 30.0%
ATACACTTACCAATGTGAAT+TGG + chr2.2:11515693-11515712 MS.gene059286:CDS 30.0%
GAGAGAAAGTTAGAAGATAT+GGG - chr2.2:11514800-11514819 None:intergenic 30.0%
GTTGAGAAAGTCGAATAATT+CGG + chr2.2:11515784-11515803 MS.gene059286:CDS 30.0%
TTTGACAAGAAAACATGCTT+TGG + chr2.2:11515541-11515560 MS.gene059286:CDS 30.0%
! TACGTTTGATTTAACCGATT+CGG + chr2.2:11515361-11515380 MS.gene059286:CDS 30.0%
AAGAACGATGAAATAGGCAT+TGG - chr2.2:11515279-11515298 None:intergenic 35.0%
AATTTCTCAAACGGAACTTC+CGG - chr2.2:11515497-11515516 None:intergenic 35.0%
ACGGTACAAATTTGAAGATG+GGG - chr2.2:11515175-11515194 None:intergenic 35.0%
AGACGGTACAAATTTGAAGA+TGG - chr2.2:11515177-11515196 None:intergenic 35.0%
AGAGAGATGAAAGAATTTGG+AGG - chr2.2:11514979-11514998 None:intergenic 35.0%
AGAGATGAAAGAATTTGGAG+GGG - chr2.2:11514977-11514996 None:intergenic 35.0%
CCAACACGAAATTTCTCAAA+CGG - chr2.2:11515506-11515525 None:intergenic 35.0%
CGTTTGAGAAATTTCGTGTT+GGG + chr2.2:11515504-11515523 MS.gene059286:CDS 35.0%
GAATCGGTTAAATCAAACGT+AGG - chr2.2:11515362-11515381 None:intergenic 35.0%
GACGGTACAAATTTGAAGAT+GGG - chr2.2:11515176-11515195 None:intergenic 35.0%
GAGAAAGAAGAGAATTGGAA+GGG - chr2.2:11514832-11514851 None:intergenic 35.0%
GAGAGATGAAAGAATTTGGA+GGG - chr2.2:11514978-11514997 None:intergenic 35.0%
GGAAGAGAGATGAAAGAATT+TGG - chr2.2:11514982-11515001 None:intergenic 35.0%
GTAGGAAAATAATGTTCCTC+AGG - chr2.2:11515635-11515654 None:intergenic 35.0%
TTACCAATGTGAATTGGACT+GGG + chr2.2:11515699-11515718 MS.gene059286:CDS 35.0%
TTGCGAAAGAACGATGAAAT+AGG - chr2.2:11515285-11515304 None:intergenic 35.0%
TTGTTAAGGATAGGACATTG+TGG + chr2.2:11515567-11515586 MS.gene059286:CDS 35.0%
! ACATGCTTTGGTTGTTGTTA+AGG + chr2.2:11515553-11515572 MS.gene059286:CDS 35.0%
! CTTTGGTTGTTGTTAAGGAT+AGG + chr2.2:11515558-11515577 MS.gene059286:CDS 35.0%
! GAAAAGGAAAGCGATTTTGA+AGG - chr2.2:11515015-11515034 None:intergenic 35.0%
! GAAATTTGTTCCTGATTGCT+TGG + chr2.2:11515826-11515845 MS.gene059286:CDS 35.0%
! GGTTGTAACTGTTGCTTAAA+CGG - chr2.2:11515154-11515173 None:intergenic 35.0%
! TTTTCCTACGTTGTTGTCTA+TGG + chr2.2:11515646-11515665 MS.gene059286:CDS 35.0%
!! GATTTTGAAGGTAGGGTTTT+TGG - chr2.2:11515003-11515022 None:intergenic 35.0%
ATCAATGGTTCCAAGCAATC+AGG - chr2.2:11515839-11515858 None:intergenic 40.0%
ATTTCAACCGAACACCGAAT+TGG - chr2.2:11515394-11515413 None:intergenic 40.0%
CAGGATAACACTCATCATCA+CGG - chr2.2:11515616-11515635 None:intergenic 40.0%
CCGTTTGAGAAATTTCGTGT+TGG + chr2.2:11515503-11515522 MS.gene059286:CDS 40.0%
CGAGAAAGAAGAGAATTGGA+AGG - chr2.2:11514833-11514852 None:intergenic 40.0%
CTTACCAATGTGAATTGGAC+TGG + chr2.2:11515698-11515717 MS.gene059286:CDS 40.0%
GACATTGTGGAGGAAGTTTA+AGG + chr2.2:11515580-11515599 MS.gene059286:CDS 40.0%
GATTGCTTGGAACCATTGAT+GGG + chr2.2:11515839-11515858 MS.gene059286:CDS 40.0%
GATTTGGCAATACCCATCAA+TGG - chr2.2:11515854-11515873 None:intergenic 40.0%
GCAATCAGGAACAAATTTCC+TGG - chr2.2:11515825-11515844 None:intergenic 40.0%
GGGTGTAGAATGTGAAATAG+CGG - chr2.2:11514937-11514956 None:intergenic 40.0%
GTTGATGTCATCGAGTTCAT+CGG - chr2.2:11514904-11514923 None:intergenic 40.0%
TCAACAATGGACCTAGGTTA+TGG + chr2.2:11515435-11515454 MS.gene059286:CDS 40.0%
TGATTGCTTGGAACCATTGA+TGG + chr2.2:11515838-11515857 MS.gene059286:CDS 40.0%
TTAAGGATAGGACATTGTGG+AGG + chr2.2:11515570-11515589 MS.gene059286:CDS 40.0%
TTGTCTATGGAGGATTCTGA+TGG + chr2.2:11515659-11515678 MS.gene059286:CDS 40.0%
TTTCAACCGAACACCGAATT+GGG - chr2.2:11515393-11515412 None:intergenic 40.0%
! AATTGGACTGGGACTGTTAA+TGG + chr2.2:11515710-11515729 MS.gene059286:CDS 40.0%
! TGATGATGAGTGTTATCCTG+AGG + chr2.2:11515616-11515635 MS.gene059286:CDS 40.0%
! TGTAACTGTTGCTTAAACGG+AGG - chr2.2:11515151-11515170 None:intergenic 40.0%
!! AGGAAAGCGATTTTGAAGGT+AGG - chr2.2:11515011-11515030 None:intergenic 40.0%
!! GGAAAGCGATTTTGAAGGTA+GGG - chr2.2:11515010-11515029 None:intergenic 40.0%
!! TAGGTTATGGAAGCGTTACA+CGG + chr2.2:11515448-11515467 MS.gene059286:CDS 40.0%
AGAGAATTGGAAGGGAGAGA+AGG - chr2.2:11514824-11514843 None:intergenic 45.0%
AGATTAAAGTGGGGGAAGCA+CGG - chr2.2:11515211-11515230 None:intergenic 45.0%
AGTCCCAGTCCAATTCACAT+TGG - chr2.2:11515705-11515724 None:intergenic 45.0%
ATCTCCATTTCACTCCTCTC+TGG + chr2.2:11515048-11515067 MS.gene059286:CDS 45.0%
ATGTCATCGAGTTCATCGGT+AGG - chr2.2:11514900-11514919 None:intergenic 45.0%
ATTGGAATGGGAGAAGGATG+AGG - chr2.2:11514873-11514892 None:intergenic 45.0%
CACTCATCATCACGGTAACA+AGG - chr2.2:11515608-11515627 None:intergenic 45.0%
GAGAGGAGTGAAATGGAGAT+CGG - chr2.2:11515048-11515067 None:intergenic 45.0%
GATTCCAGAGAGGAGTGAAA+TGG - chr2.2:11515055-11515074 None:intergenic 45.0%
GATTCGGAATCGACCCAATT+CGG + chr2.2:11515377-11515396 MS.gene059286:CDS 45.0%
GGAGCGAGAAAGAAGAGAAT+TGG - chr2.2:11514837-11514856 None:intergenic 45.0%
GGATCGCAGAAGCAAGTAAA+CGG - chr2.2:11515244-11515263 None:intergenic 45.0%
GTGTAACGCTTCCATAACCT+AGG - chr2.2:11515449-11515468 None:intergenic 45.0%
TCCTACGTTGTTGTCTATGG+AGG + chr2.2:11515649-11515668 MS.gene059286:CDS 45.0%
TCCTCCATAGACAACAACGT+AGG - chr2.2:11515653-11515672 None:intergenic 45.0%
TGGAAGAAGAGATTCCAGAG+AGG - chr2.2:11515065-11515084 None:intergenic 45.0%
TGTCATCGAGTTCATCGGTA+GGG - chr2.2:11514899-11514918 None:intergenic 45.0%
! AATGGAGATCGGTGTTTGTG+AGG - chr2.2:11515037-11515056 None:intergenic 45.0%
! GAATTGGGTCGATTCCGAAT+CGG - chr2.2:11515378-11515397 None:intergenic 45.0%
! GATCGGTGTTTGTGAGGAAA+AGG - chr2.2:11515031-11515050 None:intergenic 45.0%
! GCACGGTAGGTTTTCTTAGA+CGG - chr2.2:11515194-11515213 None:intergenic 45.0%
! GTGAAATAGCGGTGTTGAAG+AGG - chr2.2:11514926-11514945 None:intergenic 45.0%
!! AATCGACCCAATTCGGTGTT+CGG + chr2.2:11515384-11515403 MS.gene059286:CDS 45.0%
!! GAGGATTCTGATGGTGTTAC+TGG + chr2.2:11515668-11515687 MS.gene059286:CDS 45.0%
!!! CGGAGAGTTTTTTGTTTGCC+AGG + chr2.2:11515804-11515823 MS.gene059286:CDS 45.0%
AGTTCATCGGTAGGGGAGAT+TGG - chr2.2:11514891-11514910 None:intergenic 50.0%
ATCGGTAGGGGAGATTGGAA+TGG - chr2.2:11514886-11514905 None:intergenic 50.0%
CCATCCTCATACGTATCAGC+CGG + chr2.2:11515733-11515752 MS.gene059286:CDS 50.0%
CTCAACCGGAGAATAAGCTC+CGG - chr2.2:11515770-11515789 None:intergenic 50.0%
GAATGGGAGAAGGATGAGGT+GGG - chr2.2:11514869-11514888 None:intergenic 50.0%
GTCATCGAGTTCATCGGTAG+GGG - chr2.2:11514898-11514917 None:intergenic 50.0%
TCGGTAGGGGAGATTGGAAT+GGG - chr2.2:11514885-11514904 None:intergenic 50.0%
TGTCACCGGAGCTTATTCTC+CGG + chr2.2:11515762-11515781 MS.gene059286:CDS 50.0%
! AGGGGTGTGAAGAGGAAGAA+GGG - chr2.2:11514959-11514978 None:intergenic 50.0%
! GAATTTGGAGGGGTGTGAAG+AGG - chr2.2:11514967-11514986 None:intergenic 50.0%
AGAAGCAAGTAAACGGCGCG+TGG - chr2.2:11515237-11515256 None:intergenic 55.0%
CCGGCTGATACGTATGAGGA+TGG - chr2.2:11515736-11515755 None:intergenic 55.0%
GGAATGGGAGAAGGATGAGG+TGG - chr2.2:11514870-11514889 None:intergenic 55.0%
GGATGAGGTGGGAGAATAGC+AGG - chr2.2:11514858-11514877 None:intergenic 55.0%
GGGGAGATTGGAATGGGAGA+AGG - chr2.2:11514879-11514898 None:intergenic 55.0%
GGGGTGTGAAGAGGAAGAAG+GGG - chr2.2:11514958-11514977 None:intergenic 55.0%
GGGTGTGAAGAGGAAGAAGG+GGG - chr2.2:11514957-11514976 None:intergenic 55.0%
TCCTCATACGTATCAGCCGG+AGG + chr2.2:11515736-11515755 MS.gene059286:CDS 55.0%
TCCTCCGGCTGATACGTATG+AGG - chr2.2:11515740-11515759 None:intergenic 55.0%
TGGACGTTACGCGATGATGC+CGG + chr2.2:11515475-11515494 MS.gene059286:CDS 55.0%
! CGCGTGGCGGAGATTAAAGT+GGG - chr2.2:11515221-11515240 None:intergenic 55.0%
! CGTGGCGGAGATTAAAGTGG+GGG - chr2.2:11515219-11515238 None:intergenic 55.0%
! GAGGGGTGTGAAGAGGAAGA+AGG - chr2.2:11514960-11514979 None:intergenic 55.0%
! GCGTGGCGGAGATTAAAGTG+GGG - chr2.2:11515220-11515239 None:intergenic 55.0%
! TAAAGTGGGGGAAGCACGGT+AGG - chr2.2:11515207-11515226 None:intergenic 55.0%
!! AGGCATTGGAAGCATCGTCG+AGG - chr2.2:11515265-11515284 None:intergenic 55.0%
AGCAAGTAAACGGCGCGTGG+CGG - chr2.2:11515234-11515253 None:intergenic 60.0%
AGCTCCGGTGACACTTCCTC+CGG - chr2.2:11515755-11515774 None:intergenic 60.0%
! GCGCGTGGCGGAGATTAAAG+TGG - chr2.2:11515222-11515241 None:intergenic 60.0%
! TGCTTAAACGGAGGCGCGTG+AGG - chr2.2:11515142-11515161 None:intergenic 60.0%
!! TCAGCCGGAGGAAGTGTCAC+CGG + chr2.2:11515748-11515767 MS.gene059286:CDS 60.0%
!! TGGAAGCGTTACACGGCGCG+TGG + chr2.2:11515455-11515474 MS.gene059286:CDS 65.0%
AGGCGCGTGAGGTTCACGCG+CGG - chr2.2:11515131-11515150 None:intergenic 70.0%
CGTGAGGTTCACGCGCGGGT+CGG - chr2.2:11515126-11515145 None:intergenic 70.0%
GGTTCACGCGCGGGTCGGAA+TGG - chr2.2:11515121-11515140 None:intergenic 70.0%
GGCGCGTGAGGTTCACGCGC+GGG - chr2.2:11515130-11515149 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11514786 11515892 11514786 ID=MS.gene059286
chr2.2 mRNA 11514786 11515892 11514786 ID=MS.gene059286.t1;Parent=MS.gene059286
chr2.2 exon 11514786 11515892 11514786 ID=MS.gene059286.t1.exon1;Parent=MS.gene059286.t1
chr2.2 CDS 11514786 11515892 11514786 ID=cds.MS.gene059286.t1;Parent=MS.gene059286.t1
Gene Sequence

>MS.gene059286

ATGTTCTCAAACCCATATCTTCTAACTTTCTCTCTCCTTCTCTCCCTTCCAATTCTCTTCTTTCTCGCTCCTGCTATTCTCCCACCTCATCCTTCTCCCATTCCAATCTCCCCTACCGATGAACTCGATGACATCAACCTCTTCAACACCGCTATTTCACATTCTACACCCCCTTCTTCCTCTTCACACCCCTCCAAATTCTTTCATCTCTCTTCCAAAAACCCTACCTTCAAAATCGCTTTCCTTTTCCTCACAAACACCGATCTCCATTTCACTCCTCTCTGGAATCTCTTCTTCCAAAGAACCCCATCTAAATTATTCAATGTTTATGTCCATTCCGACCCGCGCGTGAACCTCACGCGCCTCCGTTTAAGCAACAGTTACAACCCCATCTTCAAATTTGTACCGTCTAAGAAAACCTACCGTGCTTCCCCCACTTTAATCTCCGCCACGCGCCGTTTACTTGCTTCTGCGATCCTCGACGATGCTTCCAATGCCTATTTCATCGTTCTTTCGCAATATTGTATCCCTCTTCATTCATTTGATTATATCTATAAATCACTTTTTCTTTCACCTACGTTTGATTTAACCGATTCGGAATCGACCCAATTCGGTGTTCGGTTGAAATATAAAAGCTTTATTGAAATTATCAACAATGGACCTAGGTTATGGAAGCGTTACACGGCGCGTGGACGTTACGCGATGATGCCGGAAGTTCCGTTTGAGAAATTTCGTGTTGGGTCGCAGTTTTTTACTTTGACAAGAAAACATGCTTTGGTTGTTGTTAAGGATAGGACATTGTGGAGGAAGTTTAAGGTTCCTTGTTACCGTGATGATGAGTGTTATCCTGAGGAACATTATTTTCCTACGTTGTTGTCTATGGAGGATTCTGATGGTGTTACTGGCTATACACTTACCAATGTGAATTGGACTGGGACTGTTAATGGCCATCCTCATACGTATCAGCCGGAGGAAGTGTCACCGGAGCTTATTCTCCGGTTGAGAAAGTCGAATAATTCGGAGAGTTTTTTGTTTGCCAGGAAATTTGTTCCTGATTGCTTGGAACCATTGATGGGTATTGCCAAATCTGTTATTTTCAAAGATTGA
Protein sequence

>MS.gene059286.t1

MFSNPYLLTFSLLLSLPILFFLAPAILPPHPSPIPISPTDELDDINLFNTAISHSTPPSSSSHPSKFFHLSSKNPTFKIAFLFLTNTDLHFTPLWNLFFQRTPSKLFNVYVHSDPRVNLTRLRLSNSYNPIFKFVPSKKTYRASPTLISATRRLLASAILDDASNAYFIVLSQYCIPLHSFDYIYKSLFLSPTFDLTDSESTQFGVRLKYKSFIEIINNGPRLWKRYTARGRYAMMPEVPFEKFRVGSQFFTLTRKHALVVVKDRTLWRKFKVPCYRDDECYPEEHYFPTLLSMEDSDGVTGYTLTNVNWTGTVNGHPHTYQPEEVSPELILRLRKSNNSESFLFARKFVPDCLEPLMGIAKSVIFKD