AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034377

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034377.t1 MTR_2g087610 98.370 368 6 0 1 368 1 368 0.0 736
MS.gene034377.t1 MTR_1g048320 50.820 366 146 9 7 368 9 344 5.60e-105 312
MS.gene034377.t1 MTR_1g031080 61.864 236 86 1 133 368 61 292 3.90e-101 301
MS.gene034377.t1 MTR_1g031060 56.757 296 115 4 75 368 78 362 2.41e-98 296
MS.gene034377.t1 MTR_3g106930 47.419 310 117 4 78 368 95 377 9.09e-88 270
MS.gene034377.t1 MTR_1g110290 35.216 301 148 11 78 365 125 391 2.59e-41 150
MS.gene034377.t1 MTR_2g037600 30.915 317 155 11 75 360 103 386 3.21e-39 144
MS.gene034377.t1 MTR_8g015500 34.564 298 155 10 78 365 144 411 4.51e-39 144
MS.gene034377.t1 MTR_3g108740 31.629 313 148 11 78 358 93 371 2.94e-38 141
MS.gene034377.t1 MTR_1g009960 30.650 323 160 11 66 358 102 390 7.92e-38 140
MS.gene034377.t1 MTR_5g055480 34.448 299 152 11 78 365 123 388 9.14e-38 140
MS.gene034377.t1 MTR_1g016880 33.333 300 157 10 78 366 107 374 2.16e-37 139
MS.gene034377.t1 MTR_2g005350 32.194 351 186 11 34 365 119 436 3.35e-37 139
MS.gene034377.t1 MTR_1g009960 32.609 276 145 10 66 334 102 343 7.60e-37 137
MS.gene034377.t1 MTR_4g127550 29.677 310 157 10 78 358 108 385 2.05e-36 136
MS.gene034377.t1 MTR_6g083830 32.886 298 160 10 78 365 150 417 4.32e-36 136
MS.gene034377.t1 MTR_2g037620 30.094 319 156 12 73 360 95 377 7.48e-36 134
MS.gene034377.t1 MTR_5g006930 32.653 294 158 9 78 361 117 380 1.06e-35 134
MS.gene034377.t1 MTR_5g006920 31.987 297 164 9 78 365 152 419 1.77e-33 129
MS.gene034377.t1 MTR_2g024120 31.288 326 153 9 78 359 62 360 1.42e-32 125
MS.gene034377.t1 MTR_3g104840 31.525 295 150 8 74 361 138 387 1.71e-31 123
MS.gene034377.t1 MTR_8g094180 29.721 323 148 10 78 349 56 350 2.99e-24 102
MS.gene034377.t1 MTR_8g094180 30.851 282 139 9 78 331 56 309 5.24e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034377.t1 AT5G22070 62.667 375 120 7 1 368 1 362 2.86e-162 459
MS.gene034377.t1 AT3G52060 54.655 333 127 5 36 368 38 346 1.50e-120 352
MS.gene034377.t1 AT5G25330 48.684 304 121 6 78 368 81 362 9.54e-87 267
MS.gene034377.t1 AT4G32290 43.733 375 141 9 36 368 33 379 7.56e-83 257
MS.gene034377.t1 AT4G31350 33.968 315 151 10 71 358 82 366 5.13e-45 159
MS.gene034377.t1 AT4G31350 33.968 315 151 10 71 358 82 366 5.13e-45 159
MS.gene034377.t1 AT4G31350 33.968 315 151 10 71 358 82 366 5.13e-45 159
MS.gene034377.t1 AT4G31350 33.968 315 146 11 71 358 82 361 4.23e-44 156
MS.gene034377.t1 AT3G21310 33.784 296 159 9 78 365 115 381 7.86e-42 150
MS.gene034377.t1 AT3G21310 33.784 296 159 9 78 365 115 381 7.86e-42 150
MS.gene034377.t1 AT1G51770 35.235 298 152 11 78 365 124 390 1.35e-41 150
MS.gene034377.t1 AT5G25970 36.054 294 147 11 78 361 119 381 6.54e-41 148
MS.gene034377.t1 AT5G25970 36.054 294 147 11 78 361 119 381 6.54e-41 148
MS.gene034377.t1 AT5G25970 36.054 294 147 11 78 361 119 381 6.54e-41 148
MS.gene034377.t1 AT1G10280 33.775 302 152 12 78 365 143 410 7.88e-41 149
MS.gene034377.t1 AT4G25870 32.803 314 148 12 78 360 99 380 7.74e-39 143
MS.gene034377.t1 AT2G19160 32.797 311 147 11 78 358 106 384 1.52e-38 142
MS.gene034377.t1 AT2G19160 32.797 311 147 11 78 358 106 384 1.52e-38 142
MS.gene034377.t1 AT4G30060 30.769 312 156 9 78 360 109 389 2.89e-37 139
MS.gene034377.t1 AT4G30060 30.769 312 156 9 78 360 109 389 2.89e-37 139
MS.gene034377.t1 AT5G57270 33.969 262 132 10 78 331 98 326 5.42e-37 138
MS.gene034377.t1 AT5G57270 33.969 262 132 10 78 331 98 326 5.42e-37 138
MS.gene034377.t1 AT5G57270 33.969 262 132 10 78 331 98 326 5.42e-37 138
MS.gene034377.t1 AT5G57270 33.969 262 132 10 78 331 98 326 5.42e-37 138
MS.gene034377.t1 AT5G57270 33.969 262 132 10 78 331 98 326 5.42e-37 138
MS.gene034377.t1 AT1G68390 33.775 302 153 13 78 365 138 406 1.10e-36 137
MS.gene034377.t1 AT5G11730 32.886 298 159 10 78 365 118 384 2.49e-36 136
MS.gene034377.t1 AT5G16170 31.410 312 168 10 69 365 127 407 2.74e-35 134
MS.gene034377.t1 AT1G10880 30.395 329 175 11 43 361 96 380 5.33e-34 129
MS.gene034377.t1 AT1G68380 33.113 302 155 11 78 366 124 391 1.35e-32 126
MS.gene034377.t1 AT1G11940 31.034 348 168 10 48 352 46 364 1.26e-30 120
MS.gene034377.t1 AT1G62305 31.832 333 154 12 78 365 69 373 5.09e-30 119
MS.gene034377.t1 AT1G51770 31.544 298 136 11 78 365 124 363 1.16e-29 117
MS.gene034377.t1 AT5G14550 31.802 283 154 9 78 347 65 321 4.14e-29 115
MS.gene034377.t1 AT5G14550 30.696 316 149 11 78 349 65 354 3.63e-27 110
MS.gene034377.t1 AT5G14550 30.599 317 150 11 78 350 65 355 4.49e-27 110
MS.gene034377.t1 AT1G73810 31.250 304 163 12 76 365 145 416 4.50e-26 108
MS.gene034377.t1 AT1G62305 34.468 235 108 7 78 294 69 275 2.79e-25 104
MS.gene034377.t1 AT1G11940 32.759 232 125 5 48 277 46 248 9.71e-23 96.7
MS.gene034377.t1 AT5G14550 29.900 301 146 11 78 350 65 328 1.54e-21 94.7
MS.gene034377.t1 AT3G21310 32.099 162 84 5 78 239 115 250 2.40e-15 75.9

Find 114 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAAAGTTAGAAGATA+TGG 0.207439 2.1:-14292928 None:intergenic
GGAAGAGAGATGAAAGAATT+TGG 0.208741 2.1:-14293109 None:intergenic
GACATTGTGGAGGAAGTTTA+AGG 0.229533 2.1:+14293710 MS.gene034377:CDS
ATCTTTGAAAATAACAGATT+TGG 0.276902 2.1:-14293997 None:intergenic
ACATGCTTTGGTTGTTGTTA+AGG 0.308207 2.1:+14293683 MS.gene034377:CDS
TAAACATTGAATAATTTAGA+TGG 0.309104 2.1:-14293222 None:intergenic
GAGGATTCTGATGGTGTTAC+TGG 0.315065 2.1:+14293798 MS.gene034377:CDS
AATTGGACTGGGACTGTTAA+TGG 0.353305 2.1:+14293840 MS.gene034377:CDS
ATTTCAACCGAACACCGAAT+TGG 0.361586 2.1:-14293521 None:intergenic
ATACACTTACCAATGTGAAT+TGG 0.369149 2.1:+14293823 MS.gene034377:CDS
TCAACAATGGTCCTAGGTTA+TGG 0.378887 2.1:+14293565 MS.gene034377:CDS
GAGAGAAAGTTAGAAGATAT+GGG 0.398505 2.1:-14292927 None:intergenic
TTTCAACCGAACACCGAATT+GGG 0.399194 2.1:-14293520 None:intergenic
GAAATTTGTTCCTGATTGCT+TGG 0.406788 2.1:+14293956 MS.gene034377:CDS
GATTCCAGAGAGGGGTGAAA+TGG 0.407050 2.1:-14293182 None:intergenic
CGTTTGAGAAATTTCGTGTT+GGG 0.409497 2.1:+14293634 MS.gene034377:CDS
GGTTGTAACTGTTGCTTAAA+CGG 0.411781 2.1:-14293281 None:intergenic
AATCGACCCAATTCGGTGTT+CGG 0.414363 2.1:+14293514 MS.gene034377:CDS
AACGTTTGATTTAACCGATT+CGG 0.415173 2.1:+14293491 MS.gene034377:CDS
GGAGCGAGAAAGAAGAGAAT+TGG 0.415517 2.1:-14292964 None:intergenic
GATTCGGAATCGACCCAATT+CGG 0.415724 2.1:+14293507 MS.gene034377:CDS
AGTTCATCGGTAGGGGAGAT+TGG 0.417480 2.1:-14293018 None:intergenic
TTTGACAAGAAAACATGCTT+TGG 0.419279 2.1:+14293671 MS.gene034377:CDS
TGATTGCTTGGAACCATTGA+TGG 0.426338 2.1:+14293968 MS.gene034377:CDS
AATTTCTCAAACGGAACTTC+CGG 0.431140 2.1:-14293624 None:intergenic
AGGGGTGTGAAGAGGAAGAA+GGG 0.436253 2.1:-14293086 None:intergenic
ATCTCCATTTCACCCCTCTC+TGG 0.436718 2.1:+14293178 MS.gene034377:CDS
ATCAATGGTTCCAAGCAATC+AGG 0.437224 2.1:-14293966 None:intergenic
GCAATCAGGAACAAATTTCC+TGG 0.437708 2.1:-14293952 None:intergenic
GGATGAGGTGGGAGAATAGC+AGG 0.455239 2.1:-14292985 None:intergenic
GATCGGTGTTGGTGAGGAAA+AGG 0.455897 2.1:-14293158 None:intergenic
AAACATTGAATAATTTAGAT+GGG 0.466588 2.1:-14293221 None:intergenic
GTTGAGAAAGTCGAATAATT+CGG 0.467142 2.1:+14293914 MS.gene034377:CDS
GACGGTACAAATTTGAAGAT+GGG 0.469772 2.1:-14293303 None:intergenic
GAGGGGTGTGAAGAGGAAGA+AGG 0.470582 2.1:-14293087 None:intergenic
AGACGGTACAAATTTGAAGA+TGG 0.472395 2.1:-14293304 None:intergenic
CCGTTTGAGAAATTTCGTGT+TGG 0.473342 2.1:+14293633 MS.gene034377:CDS
GGGTGTGAAGAGGAAGAAGG+GGG 0.474839 2.1:-14293084 None:intergenic
GGGGTGTGAAGAGGAAGAAG+GGG 0.477919 2.1:-14293085 None:intergenic
AAATTATCAACAATGGTCCT+AGG 0.486241 2.1:+14293559 MS.gene034377:CDS
ATTGGAATGGGAGAAGGATG+AGG 0.491453 2.1:-14293000 None:intergenic
CTTACCAATGTGAATTGGAC+TGG 0.493929 2.1:+14293828 MS.gene034377:CDS
AATTATTCGACTTTCTCAAC+CGG 0.502661 2.1:-14293911 None:intergenic
TCGGTAGGGGAGATTGGAAT+GGG 0.511554 2.1:-14293012 None:intergenic
GATTTGGCAATACCCATCAA+TGG 0.512678 2.1:-14293981 None:intergenic
GGATCGCTGAAGCAAGTAAA+CGG 0.513510 2.1:-14293371 None:intergenic
TCCTACGTTGTTGTCTATGG+AGG 0.514638 2.1:+14293779 MS.gene034377:CDS
GTAGGAAAATAATGTTCCTC+AGG 0.514706 2.1:-14293762 None:intergenic
GGGGAGATTGGAATGGGAGA+AGG 0.515428 2.1:-14293006 None:intergenic
AAGAACGATGAAATAAGCAT+TGG 0.522467 2.1:-14293406 None:intergenic
TCCTCCGGCTGATACGTATG+AGG 0.524726 2.1:-14293867 None:intergenic
CTTTGGTTGTTGTTAAGGAT+AGG 0.527282 2.1:+14293688 MS.gene034377:CDS
CGCGTGGCGGAGATTAAAGT+GGG 0.528482 2.1:-14293348 None:intergenic
GGTTAACGCGCGGGTCGGAA+TGG 0.528505 2.1:-14293248 None:intergenic
ATCGGTAGGGGAGATTGGAA+TGG 0.533197 2.1:-14293013 None:intergenic
GAGAGATGAAAGAATTTGGA+GGG 0.534851 2.1:-14293105 None:intergenic
GCGCGTGGCGGAGATTAAAG+TGG 0.534851 2.1:-14293349 None:intergenic
GAATGGGAGAAGGATGAGGT+GGG 0.535379 2.1:-14292996 None:intergenic
AGAGAGATGAAAGAATTTGG+AGG 0.536586 2.1:-14293106 None:intergenic
TTGTTAAGGATAGGACATTG+TGG 0.540935 2.1:+14293697 MS.gene034377:CDS
GAATTTGGAGGGGTGTGAAG+AGG 0.541017 2.1:-14293094 None:intergenic
TTTATTGAAATTATCAACAA+TGG 0.541878 2.1:+14293552 MS.gene034377:CDS
GGTGAAATGGAGATCGGTGT+TGG 0.542512 2.1:-14293169 None:intergenic
CACTCATCATCACGGTAACA+AGG 0.544806 2.1:-14293735 None:intergenic
CCAACACGAAATTTCTCAAA+CGG 0.545393 2.1:-14293633 None:intergenic
TGGACGTTACGCGATGATGC+CGG 0.547095 2.1:+14293605 MS.gene034377:CDS
AGAGAATTGGAAGAGAAAGA+AGG 0.549865 2.1:-14292951 None:intergenic
TATAATCAAACGAATGAAGA+GGG 0.552046 2.1:-14293443 None:intergenic
GGCGCGTGAGGTTAACGCGC+GGG 0.553598 2.1:-14293257 None:intergenic
TGCTTAAACGGAGGCGCGTG+AGG 0.557222 2.1:-14293269 None:intergenic
GAATTGGGTCGATTCCGAAT+CGG 0.559523 2.1:-14293505 None:intergenic
AACATTGAATAATTTAGATG+GGG 0.564738 2.1:-14293220 None:intergenic
GTGAAATAGCGGTGTTGAAG+AGG 0.564970 2.1:-14293053 None:intergenic
GAAAGAAGAGATTCCAGAGA+GGG 0.567482 2.1:-14293191 None:intergenic
TTGTCTATGGAGGATTCTGA+TGG 0.567511 2.1:+14293789 MS.gene034377:CDS
CCATCCTCATACGTATCAGC+CGG 0.571067 2.1:+14293863 MS.gene034377:CDS
ACGGTACAAATTTGAAGATG+GGG 0.571190 2.1:-14293302 None:intergenic
CGTGAGGTTAACGCGCGGGT+CGG 0.572231 2.1:-14293253 None:intergenic
GGAATGGGAGAAGGATGAGG+TGG 0.575287 2.1:-14292997 None:intergenic
TGTCATCGAGTTCATCGGTA+GGG 0.579446 2.1:-14293026 None:intergenic
GTCATCGAGTTCATCGGTAG+GGG 0.584228 2.1:-14293025 None:intergenic
GATTGCTTGGAACCATTGAT+GGG 0.586536 2.1:+14293969 MS.gene034377:CDS
AGAGATGAAAGAATTTGGAG+GGG 0.587496 2.1:-14293104 None:intergenic
TGTAACTGTTGCTTAAACGG+AGG 0.591767 2.1:-14293278 None:intergenic
TGAAGCAAGTAAACGGCGCG+TGG 0.594303 2.1:-14293364 None:intergenic
TGAAAGAAGAGATTCCAGAG+AGG 0.594543 2.1:-14293192 None:intergenic
AGCTCCGGTGACACTTCCTC+CGG 0.595229 2.1:-14293882 None:intergenic
CTCAACCGGAGAATAAGCTC+CGG 0.595442 2.1:-14293897 None:intergenic
TGGAAGCGTTACACGGCGCG+TGG 0.597375 2.1:+14293585 MS.gene034377:CDS
GTTGATGTCATCGAGTTCAT+CGG 0.598042 2.1:-14293031 None:intergenic
CCGGCTGATACGTATGAGGA+TGG 0.599049 2.1:-14293863 None:intergenic
GAGAGGGGTGAAATGGAGAT+CGG 0.601775 2.1:-14293175 None:intergenic
TCAGCCGGAGGAAGTGTCAC+CGG 0.606036 2.1:+14293878 MS.gene034377:CDS
TGTCACCGGAGCTTATTCTC+CGG 0.607381 2.1:+14293892 MS.gene034377:CDS
ATATAATCAAACGAATGAAG+AGG 0.616226 2.1:-14293444 None:intergenic
TTACCAATGTGAATTGGACT+GGG 0.620634 2.1:+14293829 MS.gene034377:CDS
AGCAAGTAAACGGCGCGTGG+CGG 0.624709 2.1:-14293361 None:intergenic
GGGTGTAGAATGTGAAATAG+CGG 0.628873 2.1:-14293064 None:intergenic
ATGTCATCGAGTTCATCGGT+AGG 0.629089 2.1:-14293027 None:intergenic
GAATCGGTTAAATCAAACGT+TGG 0.632414 2.1:-14293489 None:intergenic
AATGGAGATCGGTGTTGGTG+AGG 0.638764 2.1:-14293164 None:intergenic
GTGTAACGCTTCCATAACCT+AGG 0.647995 2.1:-14293576 None:intergenic
TAGGTTATGGAAGCGTTACA+CGG 0.650942 2.1:+14293578 MS.gene034377:CDS
AAAGAAGAGATTCCAGAGAG+GGG 0.653261 2.1:-14293190 None:intergenic
TCCTCATACGTATCAGCCGG+AGG 0.654016 2.1:+14293866 MS.gene034377:CDS
AGGCGCGTGAGGTTAACGCG+CGG 0.654886 2.1:-14293258 None:intergenic
TTAAGGATAGGACATTGTGG+AGG 0.656863 2.1:+14293700 MS.gene034377:CDS
AGTCCCAGTCCAATTCACAT+TGG 0.674151 2.1:-14293832 None:intergenic
CAGGATAACACTCATCATCA+CGG 0.676655 2.1:-14293743 None:intergenic
CGTGGCGGAGATTAAAGTGG+GGG 0.678137 2.1:-14293346 None:intergenic
AAGCATTGGAAGCATCGTCG+AGG 0.706280 2.1:-14293392 None:intergenic
GCGTGGCGGAGATTAAAGTG+GGG 0.740739 2.1:-14293347 None:intergenic
TCCTCCATAGACAACAACGT+AGG 0.744754 2.1:-14293780 None:intergenic
TGATGATGAGTGTTATCCTG+AGG 0.777255 2.1:+14293746 MS.gene034377:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTGAATAATTTAGAT+GGG - chr2.1:14293224-14293243 None:intergenic 15.0%
!! TAAACATTGAATAATTTAGA+TGG - chr2.1:14293225-14293244 None:intergenic 15.0%
!! TTTATTGAAATTATCAACAA+TGG + chr2.1:14293552-14293571 MS.gene034377:CDS 15.0%
!! AACATTGAATAATTTAGATG+GGG - chr2.1:14293223-14293242 None:intergenic 20.0%
!!! ATCTTTGAAAATAACAGATT+TGG - chr2.1:14294000-14294019 None:intergenic 20.0%
! ATATAATCAAACGAATGAAG+AGG - chr2.1:14293447-14293466 None:intergenic 25.0%
! TATAATCAAACGAATGAAGA+GGG - chr2.1:14293446-14293465 None:intergenic 25.0%
AAATTATCAACAATGGTCCT+AGG + chr2.1:14293559-14293578 MS.gene034377:CDS 30.0%
AAGAACGATGAAATAAGCAT+TGG - chr2.1:14293409-14293428 None:intergenic 30.0%
AATTATTCGACTTTCTCAAC+CGG - chr2.1:14293914-14293933 None:intergenic 30.0%
AGAGAGAAAGTTAGAAGATA+TGG - chr2.1:14292931-14292950 None:intergenic 30.0%
ATACACTTACCAATGTGAAT+TGG + chr2.1:14293823-14293842 MS.gene034377:CDS 30.0%
GAGAGAAAGTTAGAAGATAT+GGG - chr2.1:14292930-14292949 None:intergenic 30.0%
GTTGAGAAAGTCGAATAATT+CGG + chr2.1:14293914-14293933 MS.gene034377:CDS 30.0%
TTTGACAAGAAAACATGCTT+TGG + chr2.1:14293671-14293690 MS.gene034377:CDS 30.0%
! AACGTTTGATTTAACCGATT+CGG + chr2.1:14293491-14293510 MS.gene034377:CDS 30.0%
AATTTCTCAAACGGAACTTC+CGG - chr2.1:14293627-14293646 None:intergenic 35.0%
ACGGTACAAATTTGAAGATG+GGG - chr2.1:14293305-14293324 None:intergenic 35.0%
AGACGGTACAAATTTGAAGA+TGG - chr2.1:14293307-14293326 None:intergenic 35.0%
AGAGAATTGGAAGAGAAAGA+AGG - chr2.1:14292954-14292973 None:intergenic 35.0%
AGAGAGATGAAAGAATTTGG+AGG - chr2.1:14293109-14293128 None:intergenic 35.0%
AGAGATGAAAGAATTTGGAG+GGG - chr2.1:14293107-14293126 None:intergenic 35.0%
CCAACACGAAATTTCTCAAA+CGG - chr2.1:14293636-14293655 None:intergenic 35.0%
CGTTTGAGAAATTTCGTGTT+GGG + chr2.1:14293634-14293653 MS.gene034377:CDS 35.0%
GAATCGGTTAAATCAAACGT+TGG - chr2.1:14293492-14293511 None:intergenic 35.0%
GACGGTACAAATTTGAAGAT+GGG - chr2.1:14293306-14293325 None:intergenic 35.0%
GAGAGATGAAAGAATTTGGA+GGG - chr2.1:14293108-14293127 None:intergenic 35.0%
GGAAGAGAGATGAAAGAATT+TGG - chr2.1:14293112-14293131 None:intergenic 35.0%
GTAGGAAAATAATGTTCCTC+AGG - chr2.1:14293765-14293784 None:intergenic 35.0%
TTACCAATGTGAATTGGACT+GGG + chr2.1:14293829-14293848 MS.gene034377:CDS 35.0%
TTGTTAAGGATAGGACATTG+TGG + chr2.1:14293697-14293716 MS.gene034377:CDS 35.0%
! ACATGCTTTGGTTGTTGTTA+AGG + chr2.1:14293683-14293702 MS.gene034377:CDS 35.0%
! CTTTGGTTGTTGTTAAGGAT+AGG + chr2.1:14293688-14293707 MS.gene034377:CDS 35.0%
! GAAAAGGAAAGCGATTTTGA+AGG - chr2.1:14293145-14293164 None:intergenic 35.0%
! GAAATTTGTTCCTGATTGCT+TGG + chr2.1:14293956-14293975 MS.gene034377:CDS 35.0%
! GGTTGTAACTGTTGCTTAAA+CGG - chr2.1:14293284-14293303 None:intergenic 35.0%
! TTTTCCTACGTTGTTGTCTA+TGG + chr2.1:14293776-14293795 MS.gene034377:CDS 35.0%
!! GATTTTGAAGGTAGGGTTTT+TGG - chr2.1:14293133-14293152 None:intergenic 35.0%
AAAGAAGAGATTCCAGAGAG+GGG - chr2.1:14293193-14293212 None:intergenic 40.0%
ATCAATGGTTCCAAGCAATC+AGG - chr2.1:14293969-14293988 None:intergenic 40.0%
ATTTCAACCGAACACCGAAT+TGG - chr2.1:14293524-14293543 None:intergenic 40.0%
CAGGATAACACTCATCATCA+CGG - chr2.1:14293746-14293765 None:intergenic 40.0%
CCGTTTGAGAAATTTCGTGT+TGG + chr2.1:14293633-14293652 MS.gene034377:CDS 40.0%
CTTACCAATGTGAATTGGAC+TGG + chr2.1:14293828-14293847 MS.gene034377:CDS 40.0%
GAAAGAAGAGATTCCAGAGA+GGG - chr2.1:14293194-14293213 None:intergenic 40.0%
GACATTGTGGAGGAAGTTTA+AGG + chr2.1:14293710-14293729 MS.gene034377:CDS 40.0%
GATTGCTTGGAACCATTGAT+GGG + chr2.1:14293969-14293988 MS.gene034377:CDS 40.0%
GATTTGGCAATACCCATCAA+TGG - chr2.1:14293984-14294003 None:intergenic 40.0%
GCAATCAGGAACAAATTTCC+TGG - chr2.1:14293955-14293974 None:intergenic 40.0%
GGGTGTAGAATGTGAAATAG+CGG - chr2.1:14293067-14293086 None:intergenic 40.0%
GTTGATGTCATCGAGTTCAT+CGG - chr2.1:14293034-14293053 None:intergenic 40.0%
TCAACAATGGTCCTAGGTTA+TGG + chr2.1:14293565-14293584 MS.gene034377:CDS 40.0%
TGAAAGAAGAGATTCCAGAG+AGG - chr2.1:14293195-14293214 None:intergenic 40.0%
TGATTGCTTGGAACCATTGA+TGG + chr2.1:14293968-14293987 MS.gene034377:CDS 40.0%
TTAAGGATAGGACATTGTGG+AGG + chr2.1:14293700-14293719 MS.gene034377:CDS 40.0%
TTGTCTATGGAGGATTCTGA+TGG + chr2.1:14293789-14293808 MS.gene034377:CDS 40.0%
TTTCAACCGAACACCGAATT+GGG - chr2.1:14293523-14293542 None:intergenic 40.0%
! AATTGGACTGGGACTGTTAA+TGG + chr2.1:14293840-14293859 MS.gene034377:CDS 40.0%
! TGATGATGAGTGTTATCCTG+AGG + chr2.1:14293746-14293765 MS.gene034377:CDS 40.0%
! TGTAACTGTTGCTTAAACGG+AGG - chr2.1:14293281-14293300 None:intergenic 40.0%
!! AGGAAAGCGATTTTGAAGGT+AGG - chr2.1:14293141-14293160 None:intergenic 40.0%
!! GGAAAGCGATTTTGAAGGTA+GGG - chr2.1:14293140-14293159 None:intergenic 40.0%
!! TAGGTTATGGAAGCGTTACA+CGG + chr2.1:14293578-14293597 MS.gene034377:CDS 40.0%
AGATTAAAGTGGGGGAAGCA+CGG - chr2.1:14293341-14293360 None:intergenic 45.0%
AGTCCCAGTCCAATTCACAT+TGG - chr2.1:14293835-14293854 None:intergenic 45.0%
ATGTCATCGAGTTCATCGGT+AGG - chr2.1:14293030-14293049 None:intergenic 45.0%
ATTGGAATGGGAGAAGGATG+AGG - chr2.1:14293003-14293022 None:intergenic 45.0%
CACTCATCATCACGGTAACA+AGG - chr2.1:14293738-14293757 None:intergenic 45.0%
GATTCGGAATCGACCCAATT+CGG + chr2.1:14293507-14293526 MS.gene034377:CDS 45.0%
GGAGCGAGAAAGAAGAGAAT+TGG - chr2.1:14292967-14292986 None:intergenic 45.0%
GGATCGCTGAAGCAAGTAAA+CGG - chr2.1:14293374-14293393 None:intergenic 45.0%
GTGTAACGCTTCCATAACCT+AGG - chr2.1:14293579-14293598 None:intergenic 45.0%
TCCTACGTTGTTGTCTATGG+AGG + chr2.1:14293779-14293798 MS.gene034377:CDS 45.0%
TCCTCCATAGACAACAACGT+AGG - chr2.1:14293783-14293802 None:intergenic 45.0%
TGTCATCGAGTTCATCGGTA+GGG - chr2.1:14293029-14293048 None:intergenic 45.0%
! GAATTGGGTCGATTCCGAAT+CGG - chr2.1:14293508-14293527 None:intergenic 45.0%
! GCACGGTAGGTTTTCTTAGA+CGG - chr2.1:14293324-14293343 None:intergenic 45.0%
! GTGAAATAGCGGTGTTGAAG+AGG - chr2.1:14293056-14293075 None:intergenic 45.0%
!! AATCGACCCAATTCGGTGTT+CGG + chr2.1:14293514-14293533 MS.gene034377:CDS 45.0%
!! GAGGATTCTGATGGTGTTAC+TGG + chr2.1:14293798-14293817 MS.gene034377:CDS 45.0%
!!! CGGAGAGTTTTTTGTTTGCC+AGG + chr2.1:14293934-14293953 MS.gene034377:CDS 45.0%
AGTTCATCGGTAGGGGAGAT+TGG - chr2.1:14293021-14293040 None:intergenic 50.0%
ATCGGTAGGGGAGATTGGAA+TGG - chr2.1:14293016-14293035 None:intergenic 50.0%
ATCTCCATTTCACCCCTCTC+TGG + chr2.1:14293178-14293197 MS.gene034377:CDS 50.0%
CCATCCTCATACGTATCAGC+CGG + chr2.1:14293863-14293882 MS.gene034377:CDS 50.0%
CTCAACCGGAGAATAAGCTC+CGG - chr2.1:14293900-14293919 None:intergenic 50.0%
GAATGGGAGAAGGATGAGGT+GGG - chr2.1:14292999-14293018 None:intergenic 50.0%
GAGAGGGGTGAAATGGAGAT+CGG - chr2.1:14293178-14293197 None:intergenic 50.0%
GATTCCAGAGAGGGGTGAAA+TGG - chr2.1:14293185-14293204 None:intergenic 50.0%
GGTGAAATGGAGATCGGTGT+TGG - chr2.1:14293172-14293191 None:intergenic 50.0%
GTCATCGAGTTCATCGGTAG+GGG - chr2.1:14293028-14293047 None:intergenic 50.0%
TCGGTAGGGGAGATTGGAAT+GGG - chr2.1:14293015-14293034 None:intergenic 50.0%
TGTCACCGGAGCTTATTCTC+CGG + chr2.1:14293892-14293911 MS.gene034377:CDS 50.0%
! AGGGGTGTGAAGAGGAAGAA+GGG - chr2.1:14293089-14293108 None:intergenic 50.0%
! GAATTTGGAGGGGTGTGAAG+AGG - chr2.1:14293097-14293116 None:intergenic 50.0%
!! AAGCATTGGAAGCATCGTCG+AGG - chr2.1:14293395-14293414 None:intergenic 50.0%
!! AATGGAGATCGGTGTTGGTG+AGG - chr2.1:14293167-14293186 None:intergenic 50.0%
!! GATCGGTGTTGGTGAGGAAA+AGG - chr2.1:14293161-14293180 None:intergenic 50.0%
CCGGCTGATACGTATGAGGA+TGG - chr2.1:14293866-14293885 None:intergenic 55.0%
GGAATGGGAGAAGGATGAGG+TGG - chr2.1:14293000-14293019 None:intergenic 55.0%
GGATGAGGTGGGAGAATAGC+AGG - chr2.1:14292988-14293007 None:intergenic 55.0%
GGGGAGATTGGAATGGGAGA+AGG - chr2.1:14293009-14293028 None:intergenic 55.0%
GGGGTGTGAAGAGGAAGAAG+GGG - chr2.1:14293088-14293107 None:intergenic 55.0%
GGGTGTGAAGAGGAAGAAGG+GGG - chr2.1:14293087-14293106 None:intergenic 55.0%
TCCTCATACGTATCAGCCGG+AGG + chr2.1:14293866-14293885 MS.gene034377:CDS 55.0%
TCCTCCGGCTGATACGTATG+AGG - chr2.1:14293870-14293889 None:intergenic 55.0%
TGAAGCAAGTAAACGGCGCG+TGG - chr2.1:14293367-14293386 None:intergenic 55.0%
TGGACGTTACGCGATGATGC+CGG + chr2.1:14293605-14293624 MS.gene034377:CDS 55.0%
! CGCGTGGCGGAGATTAAAGT+GGG - chr2.1:14293351-14293370 None:intergenic 55.0%
! CGTGGCGGAGATTAAAGTGG+GGG - chr2.1:14293349-14293368 None:intergenic 55.0%
! GAGGGGTGTGAAGAGGAAGA+AGG - chr2.1:14293090-14293109 None:intergenic 55.0%
! GCGTGGCGGAGATTAAAGTG+GGG - chr2.1:14293350-14293369 None:intergenic 55.0%
! TAAAGTGGGGGAAGCACGGT+AGG - chr2.1:14293337-14293356 None:intergenic 55.0%
AGCAAGTAAACGGCGCGTGG+CGG - chr2.1:14293364-14293383 None:intergenic 60.0%
AGCTCCGGTGACACTTCCTC+CGG - chr2.1:14293885-14293904 None:intergenic 60.0%
! GCGCGTGGCGGAGATTAAAG+TGG - chr2.1:14293352-14293371 None:intergenic 60.0%
! TGCTTAAACGGAGGCGCGTG+AGG - chr2.1:14293272-14293291 None:intergenic 60.0%
!! TCAGCCGGAGGAAGTGTCAC+CGG + chr2.1:14293878-14293897 MS.gene034377:CDS 60.0%
AGGCGCGTGAGGTTAACGCG+CGG - chr2.1:14293261-14293280 None:intergenic 65.0%
CGTGAGGTTAACGCGCGGGT+CGG - chr2.1:14293256-14293275 None:intergenic 65.0%
GGTTAACGCGCGGGTCGGAA+TGG - chr2.1:14293251-14293270 None:intergenic 65.0%
!! TGGAAGCGTTACACGGCGCG+TGG + chr2.1:14293585-14293604 MS.gene034377:CDS 65.0%
GGCGCGTGAGGTTAACGCGC+GGG - chr2.1:14293260-14293279 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 14292916 14294022 14292916 ID=MS.gene034377
chr2.1 mRNA 14292916 14294022 14292916 ID=MS.gene034377.t1;Parent=MS.gene034377
chr2.1 exon 14292916 14294022 14292916 ID=MS.gene034377.t1.exon1;Parent=MS.gene034377.t1
chr2.1 CDS 14292916 14294022 14292916 ID=cds.MS.gene034377.t1;Parent=MS.gene034377.t1
Gene Sequence

>MS.gene034377

ATGTTCTCAAACCCATATCTTCTAACTTTCTCTCTCCTTCTTTCTCTTCCAATTCTCTTCTTTCTCGCTCCTGCTATTCTCCCACCTCATCCTTCTCCCATTCCAATCTCCCCTACCGATGAACTCGATGACATCAACCTCTTCAACACCGCTATTTCACATTCTACACCCCCTTCTTCCTCTTCACACCCCTCCAAATTCTTTCATCTCTCTTCCAAAAACCCTACCTTCAAAATCGCTTTCCTTTTCCTCACCAACACCGATCTCCATTTCACCCCTCTCTGGAATCTCTTCTTTCAAACAACCCCATCTAAATTATTCAATGTTTATGTCCATTCCGACCCGCGCGTTAACCTCACGCGCCTCCGTTTAAGCAACAGTTACAACCCCATCTTCAAATTTGTACCGTCTAAGAAAACCTACCGTGCTTCCCCCACTTTAATCTCCGCCACGCGCCGTTTACTTGCTTCAGCGATCCTCGACGATGCTTCCAATGCTTATTTCATCGTTCTTTCGCAATATTGTATCCCTCTTCATTCGTTTGATTATATCTATAAATCACTTTTTCTTTCACCAACGTTTGATTTAACCGATTCGGAATCGACCCAATTCGGTGTTCGGTTGAAATATAAAAGCTTTATTGAAATTATCAACAATGGTCCTAGGTTATGGAAGCGTTACACGGCGCGTGGACGTTACGCGATGATGCCGGAAGTTCCGTTTGAGAAATTTCGTGTTGGGTCGCAGTTTTTTACTTTGACAAGAAAACATGCTTTGGTTGTTGTTAAGGATAGGACATTGTGGAGGAAGTTTAAGGTTCCTTGTTACCGTGATGATGAGTGTTATCCTGAGGAACATTATTTTCCTACGTTGTTGTCTATGGAGGATTCTGATGGTGTTACTGGCTATACACTTACCAATGTGAATTGGACTGGGACTGTTAATGGCCATCCTCATACGTATCAGCCGGAGGAAGTGTCACCGGAGCTTATTCTCCGGTTGAGAAAGTCGAATAATTCGGAGAGTTTTTTGTTTGCCAGGAAATTTGTTCCTGATTGCTTGGAACCATTGATGGGTATTGCCAAATCTGTTATTTTCAAAGATTGA
Protein sequence

>MS.gene034377.t1

MFSNPYLLTFSLLLSLPILFFLAPAILPPHPSPIPISPTDELDDINLFNTAISHSTPPSSSSHPSKFFHLSSKNPTFKIAFLFLTNTDLHFTPLWNLFFQTTPSKLFNVYVHSDPRVNLTRLRLSNSYNPIFKFVPSKKTYRASPTLISATRRLLASAILDDASNAYFIVLSQYCIPLHSFDYIYKSLFLSPTFDLTDSESTQFGVRLKYKSFIEIINNGPRLWKRYTARGRYAMMPEVPFEKFRVGSQFFTLTRKHALVVVKDRTLWRKFKVPCYRDDECYPEEHYFPTLLSMEDSDGVTGYTLTNVNWTGTVNGHPHTYQPEEVSPELILRLRKSNNSESFLFARKFVPDCLEPLMGIAKSVIFKD