AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037928

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037928.t1 MTR_1g031080 83.768 345 3 1 1 345 1 292 0.0 567
MS.gene037928.t1 MTR_1g031060 81.792 346 62 1 1 345 17 362 0.0 516
MS.gene037928.t1 MTR_1g048320 74.640 347 79 5 4 345 2 344 2.44e-175 490
MS.gene037928.t1 MTR_2g087610 52.830 371 146 7 1 345 1 368 1.32e-116 342
MS.gene037928.t1 MTR_3g106930 52.189 297 113 4 64 345 95 377 1.75e-94 286
MS.gene037928.t1 MTR_1g110290 35.312 320 174 10 33 342 95 391 2.78e-48 167
MS.gene037928.t1 MTR_2g005350 37.241 290 151 7 63 342 168 436 2.83e-48 168
MS.gene037928.t1 MTR_1g009960 38.783 263 133 11 63 319 111 351 8.66e-47 163
MS.gene037928.t1 MTR_3g108740 34.848 330 166 10 34 335 63 371 1.68e-46 162
MS.gene037928.t1 MTR_8g015500 34.602 289 160 7 63 342 143 411 2.54e-46 162
MS.gene037928.t1 MTR_1g009960 37.874 301 138 13 63 335 111 390 3.36e-46 162
MS.gene037928.t1 MTR_1g016880 34.256 289 160 7 63 342 106 373 5.14e-46 160
MS.gene037928.t1 MTR_2g037600 34.237 295 149 6 61 329 103 378 6.78e-46 161
MS.gene037928.t1 MTR_4g127550 33.333 306 158 8 58 337 102 387 1.44e-45 160
MS.gene037928.t1 MTR_5g006930 33.861 316 177 9 37 342 91 384 3.44e-45 159
MS.gene037928.t1 MTR_5g055480 36.770 291 149 9 63 342 122 388 1.06e-44 157
MS.gene037928.t1 MTR_5g006920 34.494 316 175 10 37 342 126 419 1.45e-44 158
MS.gene037928.t1 MTR_2g037620 32.320 362 195 9 6 337 36 377 2.34e-44 157
MS.gene037928.t1 MTR_6g083830 33.123 317 178 9 37 342 124 417 8.93e-43 153
MS.gene037928.t1 MTR_3g104840 33.016 315 163 7 37 342 116 391 2.96e-41 149
MS.gene037928.t1 MTR_2g024120 31.902 326 154 12 63 342 61 364 2.20e-31 122
MS.gene037928.t1 MTR_8g094180 31.228 285 137 10 62 312 54 313 2.33e-29 115
MS.gene037928.t1 MTR_8g094180 29.341 334 154 12 62 338 54 362 2.78e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037928.t1 AT3G52060 58.044 317 112 4 37 345 43 346 2.80e-132 381
MS.gene037928.t1 AT5G22070 52.486 362 155 8 1 345 1 362 1.41e-129 375
MS.gene037928.t1 AT5G25330 48.852 305 122 7 60 345 73 362 1.09e-87 268
MS.gene037928.t1 AT4G32290 49.169 301 120 4 64 345 93 379 6.00e-86 265
MS.gene037928.t1 AT4G31350 35.905 337 168 9 26 335 51 366 9.75e-54 181
MS.gene037928.t1 AT4G31350 35.905 337 168 9 26 335 51 366 9.75e-54 181
MS.gene037928.t1 AT4G31350 35.905 337 168 9 26 335 51 366 9.75e-54 181
MS.gene037928.t1 AT4G31350 35.905 337 163 10 26 335 51 361 4.24e-52 177
MS.gene037928.t1 AT5G25970 35.959 292 157 8 60 342 115 385 6.81e-50 171
MS.gene037928.t1 AT5G25970 35.959 292 157 8 60 342 115 385 6.81e-50 171
MS.gene037928.t1 AT5G25970 35.959 292 157 8 60 342 115 385 6.81e-50 171
MS.gene037928.t1 AT1G51770 35.294 289 157 7 63 342 123 390 4.77e-48 167
MS.gene037928.t1 AT5G11730 34.948 289 158 7 63 342 117 384 1.78e-47 165
MS.gene037928.t1 AT4G30060 35.548 301 147 8 64 337 109 389 1.23e-46 163
MS.gene037928.t1 AT4G30060 35.548 301 147 8 64 337 109 389 1.23e-46 163
MS.gene037928.t1 AT2G19160 36.213 301 145 9 64 337 106 386 4.29e-46 161
MS.gene037928.t1 AT2G19160 36.213 301 145 9 64 337 106 386 4.29e-46 161
MS.gene037928.t1 AT1G10280 36.897 290 152 9 63 342 142 410 5.19e-46 162
MS.gene037928.t1 AT3G21310 35.640 289 156 8 63 342 114 381 7.67e-46 160
MS.gene037928.t1 AT3G21310 35.640 289 156 8 63 342 114 381 7.67e-46 160
MS.gene037928.t1 AT1G10880 33.442 308 173 9 40 338 96 380 2.02e-41 149
MS.gene037928.t1 AT4G25870 33.993 303 150 9 64 337 99 380 3.21e-41 148
MS.gene037928.t1 AT5G16170 33.220 295 158 8 64 342 136 407 5.64e-41 148
MS.gene037928.t1 AT5G57270 35.000 280 150 8 62 333 96 351 7.17e-41 147
MS.gene037928.t1 AT5G57270 35.000 280 150 8 62 333 96 351 7.17e-41 147
MS.gene037928.t1 AT5G57270 35.000 280 150 8 62 333 96 351 7.17e-41 147
MS.gene037928.t1 AT5G57270 35.000 280 150 8 62 333 96 351 7.17e-41 147
MS.gene037928.t1 AT5G57270 35.000 280 150 8 62 333 96 351 7.17e-41 147
MS.gene037928.t1 AT1G68390 32.302 291 165 7 63 342 137 406 1.58e-38 142
MS.gene037928.t1 AT1G68380 33.851 322 170 11 37 343 98 391 2.00e-38 141
MS.gene037928.t1 AT1G51770 32.872 289 137 8 63 342 123 363 4.22e-36 134
MS.gene037928.t1 AT1G73810 34.915 295 151 10 64 342 147 416 1.67e-34 131
MS.gene037928.t1 AT5G14550 29.373 303 170 8 42 324 43 321 7.00e-33 125
MS.gene037928.t1 AT5G14550 27.299 348 177 12 42 337 43 366 1.45e-29 117
MS.gene037928.t1 AT5G14550 26.994 326 180 10 42 333 43 344 3.54e-29 115
MS.gene037928.t1 AT1G11940 30.233 344 167 15 47 342 57 375 6.16e-29 115
MS.gene037928.t1 AT1G62305 30.312 320 153 12 55 327 60 356 2.34e-27 110
MS.gene037928.t1 AT1G62305 32.068 237 120 8 55 271 60 275 5.65e-23 97.8
MS.gene037928.t1 AT5G14550 26.946 334 169 13 42 337 43 339 1.85e-22 97.1
MS.gene037928.t1 AT3G21310 41.322 121 69 2 63 182 114 233 3.19e-22 94.7
MS.gene037928.t1 AT1G11940 33.649 211 114 8 47 252 57 246 1.35e-21 93.2

Find 108 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCACCTTTGCTCCTTTA+TGG 0.074069 1.1:-31878468 MS.gene037928:CDS
TCGGATTCCTTGTGTAAATT+TGG 0.194070 1.1:-31877945 MS.gene037928:CDS
TTACACTGACCAGAGTTAAT+TGG 0.263169 1.1:-31877850 MS.gene037928:CDS
CCTCACCTTTGCTCCTTTAT+GGG 0.265226 1.1:-31878467 MS.gene037928:CDS
TGGATAAGTGGGTGGTGGTG+TGG 0.269984 1.1:+31878542 None:intergenic
GTCGGAAAATAATGCTCTTC+TGG 0.272832 1.1:+31877911 None:intergenic
GTTGAAGAGATGGTTGTTTC+CGG 0.278745 1.1:+31878432 None:intergenic
AGGGGATACGACGGAGGTGG+TGG 0.323021 1.1:+31878390 None:intergenic
GGATAAGTGGGTGGTGGTGT+GGG 0.332097 1.1:+31878543 None:intergenic
ATAAGCTCTGGAAGAAGTTT+CGG 0.354353 1.1:-31877964 MS.gene037928:CDS
GGAGTTGTTGGGAGAGGAAG+AGG 0.356101 1.1:+31878632 None:intergenic
TAAGTGGGTGGTGGTGTGGG+TGG 0.365938 1.1:+31878546 None:intergenic
TGGAAGAGATGAAACGGTTA+TGG 0.369541 1.1:+31878356 None:intergenic
AGGGCCAGGTCATCGGCGTC+GGG 0.373907 1.1:+31878583 None:intergenic
GTGGGTGGTGGTGTGGGTGG+TGG 0.377134 1.1:+31878549 None:intergenic
GAGAAAGGGAAGGTGAATTG+TGG 0.388358 1.1:+31878607 None:intergenic
GGGTGGTGGCACGGTGGAAG+AGG 0.389635 1.1:+31878563 None:intergenic
AGAGCTAGAGAGACAAGAAT+TGG 0.401007 1.1:+31878676 None:intergenic
AGGTTTAGGGTTTGTGAGGG+TGG 0.408760 1.1:+31878522 None:intergenic
TGAATTGTGGGAGGAGTTGT+TGG 0.411962 1.1:+31878620 None:intergenic
CTCAGCTGTCGAATTAGCTC+TGG 0.413754 1.1:+31877776 None:intergenic
GGAGTGTCTTGCTCCGTTGA+TGG 0.414094 1.1:-31877705 MS.gene037928:CDS
GGTTTGTGAGGGTGGATAAG+TGG 0.419000 1.1:+31878530 None:intergenic
TGGAGAGAATGTTATGTTGC+CGG 0.421375 1.1:-31878068 MS.gene037928:CDS
GTTTGTGAGGGTGGATAAGT+GGG 0.436623 1.1:+31878531 None:intergenic
GTTGCCGGAGGTTCCGTTTG+AGG 0.437713 1.1:-31878053 MS.gene037928:CDS
GAGGGCCAGGTCATCGGCGT+CGG 0.438937 1.1:+31878582 None:intergenic
GAGTTAATTGGACTGGTTGT+TGG 0.445489 1.1:-31877838 MS.gene037928:CDS
AGTTAATTGGACTGGTTGTT+GGG 0.450706 1.1:-31877837 MS.gene037928:CDS
GGGATACGACGGAGGTGGTG+GGG 0.452133 1.1:+31878392 None:intergenic
AAAGCAAAGTATTGGTTAAG+TGG 0.453008 1.1:+31878259 None:intergenic
GAGAGAATCTCTATATAGCT+AGG 0.459879 1.1:+31878127 None:intergenic
TGGTGGTGTGGGTGGTGGCA+CGG 0.462193 1.1:+31878554 None:intergenic
TCAGATCCTCCATTGACAAA+AGG 0.467314 1.1:+31877888 None:intergenic
TGGCACGGTGGAAGAGGGCC+AGG 0.471718 1.1:+31878569 None:intergenic
GAGAAACTAAAGCAAAGTAT+TGG 0.471858 1.1:+31878251 None:intergenic
GTGGGAGGAGTTGTTGGGAG+AGG 0.472374 1.1:+31878626 None:intergenic
CGGAGGTGGTGGGGTCTGCA+TGG 0.475322 1.1:+31878401 None:intergenic
ACCACCTCCGTCGTATCCCC+TGG 0.479754 1.1:-31878388 MS.gene037928:CDS
CAGATCCTCCATTGACAAAA+GGG 0.483609 1.1:+31877889 None:intergenic
GGGAGAGGAAGAGGACGAGT+GGG 0.485804 1.1:+31878641 None:intergenic
TGGTTAGAGATTATAAGCTC+TGG 0.488573 1.1:-31877976 MS.gene037928:CDS
GGGGATACGACGGAGGTGGT+GGG 0.489281 1.1:+31878391 None:intergenic
TGAAGCACGTTGGGTTGGTT+TGG 0.493655 1.1:+31878336 None:intergenic
CGGTTATGGAAGACACCGCC+AGG 0.500731 1.1:+31878370 None:intergenic
AGAAAGGGAAGGTGAATTGT+GGG 0.501893 1.1:+31878608 None:intergenic
GGTGGTGGCACGGTGGAAGA+GGG 0.504324 1.1:+31878564 None:intergenic
GTGGAAGAGGGCCAGGTCAT+CGG 0.508067 1.1:+31878576 None:intergenic
GAGTGATGGTGAAGCACGTT+GGG 0.516508 1.1:+31878327 None:intergenic
AGCTCTGGGGAAACCTCCTC+CGG 0.519410 1.1:+31877791 None:intergenic
GGCCAGGTCATCGGCGTCGG+GGG 0.519778 1.1:+31878585 None:intergenic
GAATTGTGGGAGGAGTTGTT+GGG 0.524774 1.1:+31878621 None:intergenic
AGAATTGGAGATGACAACAT+TGG 0.529193 1.1:+31878691 None:intergenic
GGTTGGTGTTTGTGAGGAAG+AGG 0.529965 1.1:+31878488 None:intergenic
TGGGAGAGGAAGAGGACGAG+TGG 0.530108 1.1:+31878640 None:intergenic
TTGTCAATGGAGGATCTGAA+TGG 0.532445 1.1:-31877884 MS.gene037928:CDS
TCATCTTTATACTCCGGAGG+AGG 0.535041 1.1:-31877804 MS.gene037928:CDS
GGACGAGTGGGAGAGAGATG+AGG 0.537328 1.1:+31878653 None:intergenic
TTATAACGCTCGTAGAGGTT+CGG 0.537913 1.1:+31878097 None:intergenic
AAATCCTCAAACGGAACCTC+CGG 0.539492 1.1:+31878049 None:intergenic
GAGGGTGGATAAGTGGGTGG+TGG 0.541141 1.1:+31878537 None:intergenic
TCAGCTGTCGAATTAGCTCT+GGG 0.541928 1.1:+31877777 None:intergenic
TTGGTTTGGAAGAGATGAAA+CGG 0.547600 1.1:+31878350 None:intergenic
CTGACCAGAGTTAATTGGAC+TGG 0.559122 1.1:-31877845 MS.gene037928:CDS
TGTCAATGGAGGATCTGAAT+GGG 0.561186 1.1:-31877883 MS.gene037928:CDS
CACCGAGCAAGCTTCAATCC+CGG 0.562100 1.1:+31877660 None:intergenic
GGGCCAGGTCATCGGCGTCG+GGG 0.567095 1.1:+31878584 None:intergenic
GAGGATCTGAATGGGTGTAC+TGG 0.569583 1.1:-31877875 MS.gene037928:CDS
TAAAGGAGCAAAGGTGAGGT+TGG 0.569617 1.1:+31878471 None:intergenic
AATTGGACTGGTTGTTGGGA+TGG 0.570319 1.1:-31877833 MS.gene037928:CDS
CCAACCCGAAAATCCTCAAA+CGG 0.573571 1.1:+31878040 None:intergenic
TTTAGGTTTAGGGTTTGTGA+GGG 0.574889 1.1:+31878519 None:intergenic
CCCATAAAGGAGCAAAGGTG+AGG 0.577787 1.1:+31878467 None:intergenic
GACACCGCCAGGGGATACGA+CGG 0.582306 1.1:+31878381 None:intergenic
GATGGTGAAGCACGTTGGGT+TGG 0.582509 1.1:+31878331 None:intergenic
AGAGAATCTCTATATAGCTA+GGG 0.585181 1.1:+31878128 None:intergenic
GCCAGGGGATACGACGGAGG+TGG 0.585534 1.1:+31878387 None:intergenic
TCCTCCATTGACAAAAGGGT+CGG 0.587143 1.1:+31877893 None:intergenic
TGTGAGGGTGGATAAGTGGG+TGG 0.589818 1.1:+31878534 None:intergenic
GTTATTCGTATTTATTTGCG+AGG 0.596149 1.1:-31877739 MS.gene037928:CDS
GAGCGTTATAACGCTCGTAG+AGG 0.596935 1.1:+31878092 None:intergenic
TGCTATGAGACGTCGTGCAG+CGG 0.599661 1.1:+31878300 None:intergenic
GGATGTATATGTTGAAGAGA+TGG 0.601004 1.1:+31878422 None:intergenic
CAGGAAGCATGCAAAAGTTG+TGG 0.601537 1.1:-31877996 MS.gene037928:CDS
AAGGGAAGGTGAATTGTGGG+AGG 0.602260 1.1:+31878611 None:intergenic
AGAGCTAATTCGACAGCTGA+GGG 0.603699 1.1:-31877774 MS.gene037928:CDS
TACGAGCGTTATAACGCTCG+TGG 0.604840 1.1:-31878088 MS.gene037928:CDS
CAGAGCTAATTCGACAGCTG+AGG 0.608825 1.1:-31877775 MS.gene037928:CDS
ACAACCAGTCCAATTAACTC+TGG 0.617135 1.1:+31877841 None:intergenic
AGGTGAGGTTGGTGTTTGTG+AGG 0.617458 1.1:+31878482 None:intergenic
TCCTCATCTTTATACTCCGG+AGG 0.625612 1.1:-31877807 MS.gene037928:CDS
ATCAACGGAGCAAGACACTC+CGG 0.628501 1.1:+31877707 None:intergenic
ATTTGCGAGGAAATTCTCGC+CGG 0.634389 1.1:-31877726 MS.gene037928:CDS
ACATCCTCATCTTTATACTC+CGG 0.635430 1.1:-31877810 MS.gene037928:CDS
ACGAATCGAAACGACAAAAG+CGG 0.640910 1.1:+31878217 None:intergenic
CAAGAATCCAAATTTACACA+AGG 0.644692 1.1:+31877938 None:intergenic
CTATATAGAGATTCTCTCTG+AGG 0.645639 1.1:-31878122 MS.gene037928:CDS
TGGTGTGGGTGGTGGCACGG+TGG 0.645982 1.1:+31878557 None:intergenic
TCATCAGCTATATCCATCAA+CGG 0.652852 1.1:+31877692 None:intergenic
TCCTCCGGAGTATAAAGATG+AGG 0.657124 1.1:+31877806 None:intergenic
AGAGAATGTTATGTTGCCGG+AGG 0.659698 1.1:-31878065 MS.gene037928:CDS
GGTTATGGAAGACACCGCCA+GGG 0.669186 1.1:+31878371 None:intergenic
TGAGTGATGGTGAAGCACGT+TGG 0.676915 1.1:+31878326 None:intergenic
ACCTCCGTCGTATCCCCTGG+CGG 0.701974 1.1:-31878385 MS.gene037928:CDS
ACCGCCAGGGGATACGACGG+AGG 0.706931 1.1:+31878384 None:intergenic
CGTGCAGCGGAGATGAGTGA+TGG 0.712720 1.1:+31878313 None:intergenic
CAGCTGTCGAATTAGCTCTG+GGG 0.753044 1.1:+31877778 None:intergenic
GTTATGGAAGACACCGCCAG+GGG 0.770600 1.1:+31878372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTAACTGATTTTTAAAA+AGG + chr1.1:31878179-31878198 None:intergenic 15.0%
AGAGAATCTCTATATAGCTA+GGG + chr1.1:31878236-31878255 None:intergenic 30.0%
CAAGAATCCAAATTTACACA+AGG + chr1.1:31878426-31878445 None:intergenic 30.0%
GAGAAACTAAAGCAAAGTAT+TGG + chr1.1:31878113-31878132 None:intergenic 30.0%
GTTATTCGTATTTATTTGCG+AGG - chr1.1:31878622-31878641 MS.gene037928:CDS 30.0%
!! AAAGCAAAGTATTGGTTAAG+TGG + chr1.1:31878105-31878124 None:intergenic 30.0%
ACATCCTCATCTTTATACTC+CGG - chr1.1:31878551-31878570 MS.gene037928:CDS 35.0%
CTATATAGAGATTCTCTCTG+AGG - chr1.1:31878239-31878258 MS.gene037928:CDS 35.0%
GAGAGAATCTCTATATAGCT+AGG + chr1.1:31878237-31878256 None:intergenic 35.0%
GGATGTATATGTTGAAGAGA+TGG + chr1.1:31877942-31877961 None:intergenic 35.0%
TCATCAGCTATATCCATCAA+CGG + chr1.1:31878672-31878691 None:intergenic 35.0%
TCGGATTCCTTGTGTAAATT+TGG - chr1.1:31878416-31878435 MS.gene037928:CDS 35.0%
TGGTTAGAGATTATAAGCTC+TGG - chr1.1:31878385-31878404 MS.gene037928:CDS 35.0%
TTACACTGACCAGAGTTAAT+TGG - chr1.1:31878511-31878530 MS.gene037928:CDS 35.0%
TTATGGGAAAAATTCTTCGC+CGG - chr1.1:31877910-31877929 MS.gene037928:CDS 35.0%
! GCGAAGAATTTTTCCCATAA+AGG + chr1.1:31877910-31877929 None:intergenic 35.0%
! TTTAGGTTTAGGGTTTGTGA+GGG + chr1.1:31877845-31877864 None:intergenic 35.0%
! TTTTTCCCATAAAGGAGCAA+AGG + chr1.1:31877902-31877921 None:intergenic 35.0%
!! AGTTAATTGGACTGGTTGTT+GGG - chr1.1:31878524-31878543 MS.gene037928:CDS 35.0%
!! ATAAGCTCTGGAAGAAGTTT+CGG - chr1.1:31878397-31878416 MS.gene037928:CDS 35.0%
!! TTGGTTTGGAAGAGATGAAA+CGG + chr1.1:31878014-31878033 None:intergenic 35.0%
!!! AGGAAAGCGATTTTAGGTTT+AGG + chr1.1:31877856-31877875 None:intergenic 35.0%
!!! CGCAGTTTTTTATCTTGAAC+AGG - chr1.1:31878346-31878365 MS.gene037928:CDS 35.0%
!!! GGAAAGCGATTTTAGGTTTA+GGG + chr1.1:31877855-31877874 None:intergenic 35.0%
!!! TAGCTGATGATGTCATTTTC+CGG - chr1.1:31878682-31878701 MS.gene037928:CDS 35.0%
!!! TTTTAGGTTTAGGGTTTGTG+AGG + chr1.1:31877846-31877865 None:intergenic 35.0%
ACAACCAGTCCAATTAACTC+TGG + chr1.1:31878523-31878542 None:intergenic 40.0%
ACGAATCGAAACGACAAAAG+CGG + chr1.1:31878147-31878166 None:intergenic 40.0%
AGAAAGGGAAGGTGAATTGT+GGG + chr1.1:31877756-31877775 None:intergenic 40.0%
AGAGCTAGAGAGACAAGAAT+TGG + chr1.1:31877688-31877707 None:intergenic 40.0%
CAGATCCTCCATTGACAAAA+GGG + chr1.1:31878475-31878494 None:intergenic 40.0%
GTCGGAAAATAATGCTCTTC+TGG + chr1.1:31878453-31878472 None:intergenic 40.0%
TCAGATCCTCCATTGACAAA+AGG + chr1.1:31878476-31878495 None:intergenic 40.0%
TGGAAGAGATGAAACGGTTA+TGG + chr1.1:31878008-31878027 None:intergenic 40.0%
TGGAGAGAATGTTATGTTGC+CGG - chr1.1:31878293-31878312 MS.gene037928:CDS 40.0%
TGTCAATGGAGGATCTGAAT+GGG - chr1.1:31878478-31878497 MS.gene037928:CDS 40.0%
TTATAACGCTCGTAGAGGTT+CGG + chr1.1:31878267-31878286 None:intergenic 40.0%
TTGTCAATGGAGGATCTGAA+TGG - chr1.1:31878477-31878496 MS.gene037928:CDS 40.0%
! AGGAAGAGGAAAGCGATTTT+AGG + chr1.1:31877862-31877881 None:intergenic 40.0%
! AGGTTCCGTTTGAGGATTTT+CGG - chr1.1:31878316-31878335 MS.gene037928:CDS 40.0%
! GTTGAAGAGATGGTTGTTTC+CGG + chr1.1:31877932-31877951 None:intergenic 40.0%
! TTTTCCGACCCTTTTGTCAA+TGG - chr1.1:31878464-31878483 MS.gene037928:CDS 40.0%
!! GAGTTAATTGGACTGGTTGT+TGG - chr1.1:31878523-31878542 MS.gene037928:CDS 40.0%
!!! AGCTGATGATGTCATTTTCC+GGG - chr1.1:31878683-31878702 MS.gene037928:CDS 40.0%
AAATCCTCAAACGGAACCTC+CGG + chr1.1:31878315-31878334 None:intergenic 45.0%
ACCTCACCTTTGCTCCTTTA+TGG - chr1.1:31877893-31877912 MS.gene037928:CDS 45.0%
AGAGAATGTTATGTTGCCGG+AGG - chr1.1:31878296-31878315 MS.gene037928:CDS 45.0%
AGAGCTAATTCGACAGCTGA+GGG - chr1.1:31878587-31878606 MS.gene037928:CDS 45.0%
ATTTGCGAGGAAATTCTCGC+CGG - chr1.1:31878635-31878654 MS.gene037928:CDS 45.0%
CCAACCCGAAAATCCTCAAA+CGG + chr1.1:31878324-31878343 None:intergenic 45.0%
CCTCACCTTTGCTCCTTTAT+GGG - chr1.1:31877894-31877913 MS.gene037928:CDS 45.0%
CTGACCAGAGTTAATTGGAC+TGG - chr1.1:31878516-31878535 MS.gene037928:CDS 45.0%
GAATTGTGGGAGGAGTTGTT+GGG + chr1.1:31877743-31877762 None:intergenic 45.0%
GAGAAAGGGAAGGTGAATTG+TGG + chr1.1:31877757-31877776 None:intergenic 45.0%
GTTTGTGAGGGTGGATAAGT+GGG + chr1.1:31877833-31877852 None:intergenic 45.0%
TAAAGGAGCAAAGGTGAGGT+TGG + chr1.1:31877893-31877912 None:intergenic 45.0%
TCATCTTTATACTCCGGAGG+AGG - chr1.1:31878557-31878576 MS.gene037928:CDS 45.0%
TCCTCATCTTTATACTCCGG+AGG - chr1.1:31878554-31878573 MS.gene037928:CDS 45.0%
TCCTCCATTGACAAAAGGGT+CGG + chr1.1:31878471-31878490 None:intergenic 45.0%
TCCTCCGGAGTATAAAGATG+AGG + chr1.1:31878558-31878577 None:intergenic 45.0%
TGAATTGTGGGAGGAGTTGT+TGG + chr1.1:31877744-31877763 None:intergenic 45.0%
! CAGGAAGCATGCAAAAGTTG+TGG - chr1.1:31878365-31878384 MS.gene037928:CDS 45.0%
! GGTTCCGTTTGAGGATTTTC+GGG - chr1.1:31878317-31878336 MS.gene037928:CDS 45.0%
! TCAGCTGTCGAATTAGCTCT+GGG + chr1.1:31878587-31878606 None:intergenic 45.0%
!! AATTGGACTGGTTGTTGGGA+TGG - chr1.1:31878528-31878547 MS.gene037928:CDS 45.0%
AAGGGAAGGTGAATTGTGGG+AGG + chr1.1:31877753-31877772 None:intergenic 50.0%
ATCAACGGAGCAAGACACTC+CGG + chr1.1:31878657-31878676 None:intergenic 50.0%
CAGAGCTAATTCGACAGCTG+AGG - chr1.1:31878586-31878605 MS.gene037928:CDS 50.0%
CCCATAAAGGAGCAAAGGTG+AGG + chr1.1:31877897-31877916 None:intergenic 50.0%
CTCAGCTGTCGAATTAGCTC+TGG + chr1.1:31878588-31878607 None:intergenic 50.0%
GAGCGTTATAACGCTCGTAG+AGG + chr1.1:31878272-31878291 None:intergenic 50.0%
GAGGATCTGAATGGGTGTAC+TGG - chr1.1:31878486-31878505 MS.gene037928:CDS 50.0%
GGTTTGTGAGGGTGGATAAG+TGG + chr1.1:31877834-31877853 None:intergenic 50.0%
TACGAGCGTTATAACGCTCG+TGG - chr1.1:31878273-31878292 MS.gene037928:CDS 50.0%
! AGGTTTAGGGTTTGTGAGGG+TGG + chr1.1:31877842-31877861 None:intergenic 50.0%
! GAGTGATGGTGAAGCACGTT+GGG + chr1.1:31878037-31878056 None:intergenic 50.0%
! GGTTGGTGTTTGTGAGGAAG+AGG + chr1.1:31877876-31877895 None:intergenic 50.0%
! TCCGACCCTTTTGTCAATGG+AGG - chr1.1:31878467-31878486 MS.gene037928:CDS 50.0%
! TGAGTGATGGTGAAGCACGT+TGG + chr1.1:31878038-31878057 None:intergenic 50.0%
!! AGGTGAGGTTGGTGTTTGTG+AGG + chr1.1:31877882-31877901 None:intergenic 50.0%
!! CAGCTGTCGAATTAGCTCTG+GGG + chr1.1:31878586-31878605 None:intergenic 50.0%
!! TGAAGCACGTTGGGTTGGTT+TGG + chr1.1:31878028-31878047 None:intergenic 50.0%
!!! CCGTTTGAGGATTTTCGGGT+TGG - chr1.1:31878321-31878340 MS.gene037928:CDS 50.0%
GATGGTGAAGCACGTTGGGT+TGG + chr1.1:31878033-31878052 None:intergenic 55.0%
GGAGTTGTTGGGAGAGGAAG+AGG + chr1.1:31877732-31877751 None:intergenic 55.0%
GGTTATGGAAGACACCGCCA+GGG + chr1.1:31877993-31878012 None:intergenic 55.0%
GTTATGGAAGACACCGCCAG+GGG + chr1.1:31877992-31878011 None:intergenic 55.0%
TGCTATGAGACGTCGTGCAG+CGG + chr1.1:31878064-31878083 None:intergenic 55.0%
TGTGAGGGTGGATAAGTGGG+TGG + chr1.1:31877830-31877849 None:intergenic 55.0%
! GGAGTGTCTTGCTCCGTTGA+TGG - chr1.1:31878656-31878675 MS.gene037928:CDS 55.0%
! GGATAAGTGGGTGGTGGTGT+GGG + chr1.1:31877821-31877840 None:intergenic 55.0%
! TGGATAAGTGGGTGGTGGTG+TGG + chr1.1:31877822-31877841 None:intergenic 55.0%
CGGTTATGGAAGACACCGCC+AGG + chr1.1:31877994-31878013 None:intergenic 60.0%
CGTGCAGCGGAGATGAGTGA+TGG + chr1.1:31878051-31878070 None:intergenic 60.0%
GAGGGTGGATAAGTGGGTGG+TGG + chr1.1:31877827-31877846 None:intergenic 60.0%
GGACGAGTGGGAGAGAGATG+AGG + chr1.1:31877711-31877730 None:intergenic 60.0%
GGGAGAGGAAGAGGACGAGT+GGG + chr1.1:31877723-31877742 None:intergenic 60.0%
GTGGAAGAGGGCCAGGTCAT+CGG + chr1.1:31877788-31877807 None:intergenic 60.0%
GTGGGAGGAGTTGTTGGGAG+AGG + chr1.1:31877738-31877757 None:intergenic 60.0%
GTTGCCGGAGGTTCCGTTTG+AGG - chr1.1:31878308-31878327 MS.gene037928:CDS 60.0%
TGGGAGAGGAAGAGGACGAG+TGG + chr1.1:31877724-31877743 None:intergenic 60.0%
! TAAGTGGGTGGTGGTGTGGG+TGG + chr1.1:31877818-31877837 None:intergenic 60.0%
!! AGCTCTGGGGAAACCTCCTC+CGG + chr1.1:31878573-31878592 None:intergenic 60.0%
ACCACCTCCGTCGTATCCCC+TGG - chr1.1:31877973-31877992 MS.gene037928:CDS 65.0%
ACCTCCGTCGTATCCCCTGG+CGG - chr1.1:31877976-31877995 MS.gene037928:CDS 65.0%
AGGGGATACGACGGAGGTGG+TGG + chr1.1:31877974-31877993 None:intergenic 65.0%
GACACCGCCAGGGGATACGA+CGG + chr1.1:31877983-31878002 None:intergenic 65.0%
GGGATACGACGGAGGTGGTG+GGG + chr1.1:31877972-31877991 None:intergenic 65.0%
GGGGATACGACGGAGGTGGT+GGG + chr1.1:31877973-31877992 None:intergenic 65.0%
! CATCGGCGTCGGGGGAGAAA+GGG + chr1.1:31877771-31877790 None:intergenic 65.0%
! GGTGGTGGCACGGTGGAAGA+GGG + chr1.1:31877800-31877819 None:intergenic 65.0%
! TCATCGGCGTCGGGGGAGAA+AGG + chr1.1:31877772-31877791 None:intergenic 65.0%
! TGGTGGTGTGGGTGGTGGCA+CGG + chr1.1:31877810-31877829 None:intergenic 65.0%
ACCGCCAGGGGATACGACGG+AGG + chr1.1:31877980-31877999 None:intergenic 70.0%
AGGGCCAGGTCATCGGCGTC+GGG + chr1.1:31877781-31877800 None:intergenic 70.0%
GAGGGCCAGGTCATCGGCGT+CGG + chr1.1:31877782-31877801 None:intergenic 70.0%
GCCAGGGGATACGACGGAGG+TGG + chr1.1:31877977-31877996 None:intergenic 70.0%
TGGCACGGTGGAAGAGGGCC+AGG + chr1.1:31877795-31877814 None:intergenic 70.0%
! GGCGTCGGGGGAGAAAGGGA+AGG + chr1.1:31877767-31877786 None:intergenic 70.0%
! GGGTGGTGGCACGGTGGAAG+AGG + chr1.1:31877801-31877820 None:intergenic 70.0%
! GTGGGTGGTGGTGTGGGTGG+TGG + chr1.1:31877815-31877834 None:intergenic 70.0%
! TGGTGTGGGTGGTGGCACGG+TGG + chr1.1:31877807-31877826 None:intergenic 70.0%
!! CGGAGGTGGTGGGGTCTGCA+TGG + chr1.1:31877963-31877982 None:intergenic 70.0%
CTCCCCCGACGCCGATGACC+TGG - chr1.1:31877774-31877793 MS.gene037928:CDS 75.0%
GGGCCAGGTCATCGGCGTCG+GGG + chr1.1:31877780-31877799 None:intergenic 75.0%
! GGCCAGGTCATCGGCGTCGG+GGG + chr1.1:31877779-31877798 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 31877673 31878710 31877673 ID=MS.gene037928
chr1.1 mRNA 31877673 31878710 31877673 ID=MS.gene037928.t1;Parent=MS.gene037928
chr1.1 exon 31877673 31878710 31877673 ID=MS.gene037928.t1.exon1;Parent=MS.gene037928.t1
chr1.1 CDS 31877673 31878710 31877673 ID=cds.MS.gene037928.t1;Parent=MS.gene037928.t1
Gene Sequence

>MS.gene037928

ATGTTGTCATCTCCAATTCTTGTCTCTCTAGCTCTCCTCATCTCTCTCCCACTCGTCCTCTTCCTCTCCCAACAACTCCTCCCACAATTCACCTTCCCTTTCTCCCCCGACGCCGATGACCTGGCCCTCTTCCACCGTGCCACCACCCACACCACCACCCACTTATCCACCCTCACAAACCCTAAACCTAAAATCGCTTTCCTCTTCCTCACAAACACCAACCTCACCTTTGCTCCTTTATGGGAAAAATTCTTCGCCGGAAACAACCATCTCTTCAACATATACATCCATGCAGACCCCACCACCTCCGTCGTATCCCCTGGCGGTGTCTTCCATAACCGTTTCATCTCTTCCAAACCAACCCAACGTGCTTCACCATCACTCATCTCCGCTGCACGACGTCTCATAGCATCTGCTCTATTAGATGATCCACTTAACCAATACTTTGCTTTAGTTTCTCAACACTGTGTTCCGCTTTTGTCGTTTCGATTCGTTTATAACTACCTTTTTAAAAATCAGTTAATGTCGTTAGCGAGTTTTTCTGACTTTAACTTACTGTACCCTAGCTATATAGAGATTCTCTCTGAGGATCCGAACCTCTACGAGCGTTATAACGCTCGTGGAGAGAATGTTATGTTGCCGGAGGTTCCGTTTGAGGATTTTCGGGTTGGTTCGCAGTTTTTTATCTTGAACAGGAAGCATGCAAAAGTTGTGGTTAGAGATTATAAGCTCTGGAAGAAGTTTCGGATTCCTTGTGTAAATTTGGATTCTTGTTATCCAGAAGAGCATTATTTTCCGACCCTTTTGTCAATGGAGGATCTGAATGGGTGTACTGGTTTTACACTGACCAGAGTTAATTGGACTGGTTGTTGGGATGGACATCCTCATCTTTATACTCCGGAGGAGGTTTCCCCAGAGCTAATTCGACAGCTGAGGGTGTCGAATTCGAGTTATTCGTATTTATTTGCGAGGAAATTCTCGCCGGAGTGTCTTGCTCCGTTGATGGATATAGCTGATGATGTCATTTTCCGGGATTGA
Protein sequence

>MS.gene037928.t1

MLSSPILVSLALLISLPLVLFLSQQLLPQFTFPFSPDADDLALFHRATTHTTTHLSTLTNPKPKIAFLFLTNTNLTFAPLWEKFFAGNNHLFNIYIHADPTTSVVSPGGVFHNRFISSKPTQRASPSLISAARRLIASALLDDPLNQYFALVSQHCVPLLSFRFVYNYLFKNQLMSLASFSDFNLLYPSYIEILSEDPNLYERYNARGENVMLPEVPFEDFRVGSQFFILNRKHAKVVVRDYKLWKKFRIPCVNLDSCYPEEHYFPTLLSMEDLNGCTGFTLTRVNWTGCWDGHPHLYTPEEVSPELIRQLRVSNSSYSYLFARKFSPECLAPLMDIADDVIFRD