AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037929

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037929.t1 MTR_1g031060 95.028 362 18 0 1 362 1 362 0.0 640
MS.gene037929.t1 MTR_1g031080 67.630 346 58 2 17 362 1 292 4.30e-161 453
MS.gene037929.t1 MTR_1g048320 68.103 348 101 5 18 362 4 344 8.84e-154 436
MS.gene037929.t1 MTR_2g087610 56.081 296 117 5 78 362 75 368 6.53e-104 310
MS.gene037929.t1 MTR_3g106930 50.168 297 119 5 81 362 95 377 6.40e-87 267
MS.gene037929.t1 MTR_5g006930 37.386 329 173 12 38 355 74 380 1.55e-47 166
MS.gene037929.t1 MTR_5g006920 36.474 329 176 12 38 355 109 415 1.02e-46 164
MS.gene037929.t1 MTR_1g110290 36.593 317 166 11 54 359 99 391 1.80e-44 158
MS.gene037929.t1 MTR_5g055480 36.392 316 167 10 54 359 97 388 1.93e-43 155
MS.gene037929.t1 MTR_2g037600 33.225 307 160 8 74 354 99 386 2.64e-43 154
MS.gene037929.t1 MTR_6g083830 34.925 335 185 11 36 359 105 417 6.85e-43 154
MS.gene037929.t1 MTR_2g037620 30.867 392 202 15 9 354 9 377 2.49e-42 152
MS.gene037929.t1 MTR_1g009960 37.405 262 138 9 80 336 111 351 2.94e-42 151
MS.gene037929.t1 MTR_4g127550 32.573 307 159 9 75 354 102 387 7.61e-42 150
MS.gene037929.t1 MTR_3g108740 36.333 300 144 9 80 352 92 371 9.84e-42 150
MS.gene037929.t1 MTR_1g009960 37.402 254 133 9 80 328 111 343 6.44e-41 148
MS.gene037929.t1 MTR_8g015500 33.866 313 177 8 56 359 120 411 1.53e-40 147
MS.gene037929.t1 MTR_2g005350 34.354 294 154 8 80 359 168 436 1.80e-40 148
MS.gene037929.t1 MTR_3g104840 34.810 316 158 9 49 355 111 387 6.34e-40 145
MS.gene037929.t1 MTR_1g016880 33.333 291 164 8 80 361 106 375 1.09e-39 144
MS.gene037929.t1 MTR_2g024120 30.368 326 159 12 80 359 61 364 2.26e-31 122
MS.gene037929.t1 MTR_8g094180 28.242 347 168 11 70 355 36 362 1.64e-29 117
MS.gene037929.t1 MTR_8g094180 29.492 295 150 8 70 326 36 310 4.56e-29 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037929.t1 AT3G52060 54.268 328 129 4 43 362 32 346 2.78e-121 354
MS.gene037929.t1 AT5G22070 48.485 363 169 7 17 362 1 362 3.21e-116 342
MS.gene037929.t1 AT5G25330 47.811 297 125 7 81 362 81 362 1.03e-83 259
MS.gene037929.t1 AT4G32290 48.505 301 122 5 81 362 93 379 4.15e-78 245
MS.gene037929.t1 AT4G31350 36.455 299 144 7 80 352 88 366 1.73e-48 168
MS.gene037929.t1 AT4G31350 36.455 299 144 7 80 352 88 366 1.73e-48 168
MS.gene037929.t1 AT4G31350 36.455 299 144 7 80 352 88 366 1.73e-48 168
MS.gene037929.t1 AT4G31350 36.455 299 139 8 80 352 88 361 1.47e-47 165
MS.gene037929.t1 AT1G51770 33.626 342 190 10 33 359 71 390 6.80e-44 156
MS.gene037929.t1 AT2G19160 31.016 374 197 10 22 354 33 386 6.83e-44 156
MS.gene037929.t1 AT2G19160 31.016 374 197 10 22 354 33 386 6.83e-44 156
MS.gene037929.t1 AT5G25970 34.722 288 152 8 80 355 118 381 9.09e-43 153
MS.gene037929.t1 AT5G25970 34.722 288 152 8 80 355 118 381 9.09e-43 153
MS.gene037929.t1 AT5G25970 34.722 288 152 8 80 355 118 381 9.09e-43 153
MS.gene037929.t1 AT1G10280 36.082 291 153 8 80 359 142 410 1.61e-42 153
MS.gene037929.t1 AT3G21310 34.505 313 174 8 56 359 91 381 1.93e-42 152
MS.gene037929.t1 AT3G21310 34.505 313 174 8 56 359 91 381 1.93e-42 152
MS.gene037929.t1 AT4G30060 32.903 310 155 9 75 354 103 389 2.93e-42 152
MS.gene037929.t1 AT4G30060 32.903 310 155 9 75 354 103 389 2.93e-42 152
MS.gene037929.t1 AT5G11730 33.904 292 157 8 80 359 117 384 3.41e-42 151
MS.gene037929.t1 AT1G68380 35.254 295 151 9 80 360 123 391 3.05e-39 144
MS.gene037929.t1 AT5G57270 33.007 306 153 9 79 354 96 379 4.84e-39 143
MS.gene037929.t1 AT5G57270 33.007 306 153 9 79 354 96 379 4.84e-39 143
MS.gene037929.t1 AT5G57270 33.007 306 153 9 79 354 96 379 4.84e-39 143
MS.gene037929.t1 AT5G57270 33.007 306 153 9 79 354 96 379 4.84e-39 143
MS.gene037929.t1 AT5G57270 33.007 306 153 9 79 354 96 379 4.84e-39 143
MS.gene037929.t1 AT5G16170 34.237 295 155 8 81 359 136 407 1.73e-38 142
MS.gene037929.t1 AT1G68390 33.333 291 162 9 80 359 137 406 4.22e-37 138
MS.gene037929.t1 AT1G10880 34.146 287 155 9 80 355 117 380 5.11e-37 137
MS.gene037929.t1 AT4G25870 32.119 302 157 7 81 354 99 380 1.04e-36 137
MS.gene037929.t1 AT1G73810 35.216 301 152 11 76 359 142 416 7.89e-34 129
MS.gene037929.t1 AT1G51770 30.409 342 174 10 33 359 71 363 1.39e-31 123
MS.gene037929.t1 AT5G14550 29.371 286 158 7 76 341 60 321 3.38e-31 121
MS.gene037929.t1 AT5G14550 27.508 309 166 8 76 350 60 344 2.91e-28 114
MS.gene037929.t1 AT5G14550 27.508 309 166 8 76 350 60 344 3.21e-28 113
MS.gene037929.t1 AT1G11940 26.933 401 211 16 6 359 10 375 7.89e-28 112
MS.gene037929.t1 AT1G62305 29.283 321 159 11 79 353 67 365 1.81e-26 108
MS.gene037929.t1 AT1G62305 31.897 232 115 8 79 289 67 276 1.33e-23 100
MS.gene037929.t1 AT3G21310 41.379 145 81 4 56 199 91 232 7.48e-22 94.0
MS.gene037929.t1 AT1G11940 28.519 270 154 9 6 269 10 246 1.17e-21 93.6
MS.gene037929.t1 AT5G14550 26.804 291 164 9 76 350 60 317 3.23e-21 93.6

Find 92 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGACCTTCGCACCTTTA+TGG 0.111596 1.1:-31891758 MS.gene037929:CDS
GAGGAAGAGGAAAGCGATTT+TGG 0.152318 1.1:+31891791 None:intergenic
ACACAACCTTTGTATGTTTC+CGG 0.216341 1.1:+31891286 None:intergenic
TTACACTGACTAGAGTTAAT+TGG 0.219828 1.1:-31891140 MS.gene037929:CDS
CCTGACCTTCGCACCTTTAT+GGG 0.229629 1.1:-31891757 MS.gene037929:CDS
AATTGGACCGGTTCTGTCTA+TGG 0.305698 1.1:-31891123 MS.gene037929:CDS
AGAGCTAGATAGACAATAAT+TGG 0.321477 1.1:+31891969 None:intergenic
TTGAAGGGATGAAACGGTTT+TGG 0.330698 1.1:+31891646 None:intergenic
CCCATAAAGGTGCGAAGGTC+AGG 0.352360 1.1:+31891757 None:intergenic
GAAAATGTGGGTGGTGGTGT+GGG 0.369281 1.1:+31891833 None:intergenic
AGGGTGAGGTCGTTGGCGTC+GGG 0.370602 1.1:+31891873 None:intergenic
GGGTTGTGGCGCGGCGGAAG+AGG 0.385465 1.1:+31891853 None:intergenic
GGTGAGGTCGTTGGCGTCGG+GGG 0.387981 1.1:+31891875 None:intergenic
TGAAAATGTGGGTGGTGGTG+TGG 0.392713 1.1:+31891832 None:intergenic
CAATAATACTTATTTATACA+TGG 0.408546 1.1:+31891228 None:intergenic
GTGGGTGGTGGTGTGGGTTG+TGG 0.409947 1.1:+31891839 None:intergenic
GGTTAGAGTTGGTGAGGAAG+AGG 0.414237 1.1:+31891778 None:intergenic
AGGCAGAAAATATCAATATA+CGG 0.414838 1.1:-31891392 MS.gene037929:CDS
TCTATCAATGGAGGACTTGA+AGG 0.417198 1.1:-31891175 MS.gene037929:CDS
TAGATATGAATAACTCCAAT+TGG 0.419719 1.1:+31891038 None:intergenic
GAGGGTGAGGTCGTTGGCGT+CGG 0.423861 1.1:+31891872 None:intergenic
ACATTCCGCTGAGAATTTCC+TGG 0.434041 1.1:+31891011 None:intergenic
GTCAGCTGAGGGTGTCCAAT+TGG 0.435014 1.1:-31891053 MS.gene037929:CDS
TGGAGAGAATGTAATGTTGC+CGG 0.436873 1.1:-31891358 MS.gene037929:CDS
GTTGCCGGAGGTTCCGTTTG+AGG 0.437713 1.1:-31891343 MS.gene037929:CDS
TGAGAGAATCTCAATATAGC+TGG 0.445207 1.1:+31891416 None:intergenic
GGTGTTGTTGGGTGAGAAAG+AGG 0.450731 1.1:+31891925 None:intergenic
GTTGACAACAATGGATTTAG+TGG 0.454154 1.1:+31891993 None:intergenic
TGGTGGTGTGGGTTGTGGCG+CGG 0.456059 1.1:+31891844 None:intergenic
TGGGTGAGAAAGAGGATAAG+TGG 0.458255 1.1:+31891933 None:intergenic
GTCGGAAAATAATGTTCCTC+TGG 0.476768 1.1:+31891201 None:intergenic
GGGTGAGAAAGAGGATAAGT+GGG 0.482380 1.1:+31891934 None:intergenic
GGGAGATAAGTGCAAAGTAT+TGG 0.484120 1.1:+31891541 None:intergenic
AGCTCTGGCGACACCTCTGC+TGG 0.488365 1.1:+31891081 None:intergenic
GTTATTCATATCTATTCGCC+AGG 0.491313 1.1:-31891029 MS.gene037929:CDS
GGTTGTGGCGCGGCGGAAGA+GGG 0.493860 1.1:+31891854 None:intergenic
GAAGAGCGGAATACAATGTT+GGG 0.494292 1.1:+31891521 None:intergenic
ACCACCTATGTCGTCTCCCC+CGG 0.495251 1.1:-31891678 MS.gene037929:CDS
GATGGAGAGTAACGTTTGGT+GGG 0.499446 1.1:+31891621 None:intergenic
TGGCGCGGCGGAAGAGGGTG+AGG 0.501117 1.1:+31891859 None:intergenic
CGGGCAGCCGCGATGAGTGA+TGG 0.513763 1.1:+31891603 None:intergenic
GGTTCAGTGGGTCATCTAAG+AGG 0.514148 1.1:+31891562 None:intergenic
AGAAGAGCGGAATACAATGT+TGG 0.517351 1.1:+31891520 None:intergenic
GAGAGAATCTCAATATAGCT+GGG 0.521210 1.1:+31891417 None:intergenic
TGATGGAGAGTAACGTTTGG+TGG 0.531016 1.1:+31891620 None:intergenic
GCGGAAGAGGGTGAGGTCGT+TGG 0.536313 1.1:+31891866 None:intergenic
GGCAGATGCTAGGAGACGGC+GGG 0.537343 1.1:+31891584 None:intergenic
AAATCCTCAAACGGAACCTC+CGG 0.539492 1.1:+31891339 None:intergenic
GGGTGAGGTCGTTGGCGTCG+GGG 0.541309 1.1:+31891874 None:intergenic
TCCTCCATTGATAGAAGAGT+CGG 0.541364 1.1:+31891183 None:intergenic
ATAATTGAGAGAGGTGTTGT+TGG 0.544624 1.1:+31891913 None:intergenic
CAATATAGCTGGGGTACAGT+AGG 0.548185 1.1:+31891427 None:intergenic
GAGGGTGAAAATGTGGGTGG+TGG 0.551330 1.1:+31891827 None:intergenic
CATCTAAGAGGGCAGATGCT+AGG 0.551980 1.1:+31891574 None:intergenic
TGTTGAGAGATCAAAAGCTA+TGG 0.553117 1.1:-31891266 MS.gene037929:CDS
CCAACCCGAAAATCCTCAAA+CGG 0.556590 1.1:+31891330 None:intergenic
CTATCAATGGAGGACTTGAA+GGG 0.558282 1.1:-31891174 MS.gene037929:CDS
TGGATGGCCATAGACAGAAC+CGG 0.566191 1.1:+31891116 None:intergenic
TAATTGAGAGAGGTGTTGTT+GGG 0.570275 1.1:+31891914 None:intergenic
GTGCAAAGTATTGGTTCAGT+GGG 0.571044 1.1:+31891550 None:intergenic
TGCGAAGGTCAGGTTAGAGT+TGG 0.571465 1.1:+31891767 None:intergenic
CTGACTAGAGTTAATTGGAC+CGG 0.573741 1.1:-31891135 MS.gene037929:CDS
AAGGGAAGGATAATTGAGAG+AGG 0.583106 1.1:+31891904 None:intergenic
ATAATTGGTGTTGACAACAA+TGG 0.584186 1.1:+31891984 None:intergenic
TCCGACTCTTCTATCAATGG+AGG 0.586529 1.1:-31891184 MS.gene037929:CDS
AGTGCAAAGTATTGGTTCAG+TGG 0.589016 1.1:+31891549 None:intergenic
AATATACGGTATAATGCTCG+TGG 0.592590 1.1:-31891378 MS.gene037929:CDS
GTACAGTAGGTTAAATTCAG+AGG 0.594694 1.1:+31891440 None:intergenic
GTTCAGTGGGTCATCTAAGA+GGG 0.599121 1.1:+31891563 None:intergenic
GGGCAGATGCTAGGAGACGG+CGG 0.605522 1.1:+31891583 None:intergenic
AGGTCAGGTTAGAGTTGGTG+AGG 0.605637 1.1:+31891772 None:intergenic
TGGTGTGGGTTGTGGCGCGG+CGG 0.613974 1.1:+31891847 None:intergenic
CATAGGTGGTGGGATCTGCA+TGG 0.615109 1.1:+31891691 None:intergenic
TATGAGGGTGAAAATGTGGG+TGG 0.616892 1.1:+31891824 None:intergenic
TAAGTATTATTGTTATCCAG+AGG 0.629370 1.1:-31891217 MS.gene037929:CDS
AGAGGGCAGATGCTAGGAGA+CGG 0.639417 1.1:+31891580 None:intergenic
CTTGAACCGGAAACATACAA+AGG 0.648378 1.1:-31891292 MS.gene037929:CDS
CTATATTGAGATTCTCTCAG+AGG 0.650945 1.1:-31891412 MS.gene037929:CDS
ATGAATTGAAACGAGAAGAG+CGG 0.654333 1.1:+31891507 None:intergenic
TATCAATGGAGGACTTGAAG+GGG 0.655133 1.1:-31891173 MS.gene037929:CDS
TCATCAGCAATATTCATCAA+CGG 0.655931 1.1:+31890982 None:intergenic
GAGTGATGGAGAGTAACGTT+TGG 0.656827 1.1:+31891617 None:intergenic
TCTGCTGGAGTATAAAGATG+TGG 0.660732 1.1:+31891096 None:intergenic
GGACGTAGATGTTGAAGAGG+TGG 0.662229 1.1:+31891712 None:intergenic
AGAGAATCTCAATATAGCTG+GGG 0.663742 1.1:+31891418 None:intergenic
CTGGAGTATAAAGATGTGGA+TGG 0.667016 1.1:+31891100 None:intergenic
GGGGAGACGACATAGGTGGT+GGG 0.667875 1.1:+31891681 None:intergenic
CATGGACGTAGATGTTGAAG+AGG 0.678016 1.1:+31891709 None:intergenic
ACATCTTTATACTCCAGCAG+AGG 0.685951 1.1:-31891094 MS.gene037929:CDS
AGAGAATGTAATGTTGCCGG+AGG 0.692280 1.1:-31891355 MS.gene037929:CDS
ATTCGCCAGGAAATTCTCAG+CGG 0.766399 1.1:-31891016 MS.gene037929:CDS
TTACTCTCCATCACTCATCG+CGG 0.773471 1.1:-31891610 MS.gene037929:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTAATTGATTTTTAAAA+AGG + chr1.1:31891520-31891539 None:intergenic 10.0%
!! CAATAATACTTATTTATACA+TGG + chr1.1:31891767-31891786 None:intergenic 15.0%
!!! ATTTAGTGGTTTTTTATTGA+GGG + chr1.1:31890988-31891007 None:intergenic 20.0%
! AGGCAGAAAATATCAATATA+CGG - chr1.1:31891600-31891619 MS.gene037929:CDS 25.0%
! TAAGTATTATTGTTATCCAG+AGG - chr1.1:31891775-31891794 MS.gene037929:CDS 25.0%
! TAGATATGAATAACTCCAAT+TGG + chr1.1:31891957-31891976 None:intergenic 25.0%
!! ACAAAGAATTTTTCCCATAA+AGG + chr1.1:31891251-31891270 None:intergenic 25.0%
!!! CACAATTTTTTATCTTGAAC+CGG - chr1.1:31891687-31891706 MS.gene037929:CDS 25.0%
!!! GATTTAGTGGTTTTTTATTG+AGG + chr1.1:31890989-31891008 None:intergenic 25.0%
!!! TTTAGTGGTTTTTTATTGAG+GGG + chr1.1:31890987-31891006 None:intergenic 25.0%
AGAGCTAGATAGACAATAAT+TGG + chr1.1:31891026-31891045 None:intergenic 30.0%
TCATCAGCAATATTCATCAA+CGG + chr1.1:31892013-31892032 None:intergenic 30.0%
! TTACACTGACTAGAGTTAAT+TGG - chr1.1:31891852-31891871 MS.gene037929:CDS 30.0%
! TTTTATGAGGGTGAAAATGT+GGG + chr1.1:31891174-31891193 None:intergenic 30.0%
!! ATAATTGGTGTTGACAACAA+TGG + chr1.1:31891011-31891030 None:intergenic 30.0%
!!! GTTTTTTATTGAGGGGTTTT+GGG + chr1.1:31890980-31890999 None:intergenic 30.0%
!!! TTTTTTATTGAGGGGTTTTG+GGG + chr1.1:31890979-31890998 None:intergenic 30.0%
AATATACGGTATAATGCTCG+TGG - chr1.1:31891614-31891633 MS.gene037929:CDS 35.0%
ACACAACCTTTGTATGTTTC+CGG + chr1.1:31891709-31891728 None:intergenic 35.0%
AGAGAATCTCAATATAGCTG+GGG + chr1.1:31891577-31891596 None:intergenic 35.0%
ATGAATTGAAACGAGAAGAG+CGG + chr1.1:31891488-31891507 None:intergenic 35.0%
CTATATTGAGATTCTCTCAG+AGG - chr1.1:31891580-31891599 MS.gene037929:CDS 35.0%
GAGAGAATCTCAATATAGCT+GGG + chr1.1:31891578-31891597 None:intergenic 35.0%
GTACAGTAGGTTAAATTCAG+AGG + chr1.1:31891555-31891574 None:intergenic 35.0%
GTTATTCATATCTATTCGCC+AGG - chr1.1:31891963-31891982 MS.gene037929:CDS 35.0%
TGAGAGAATCTCAATATAGC+TGG + chr1.1:31891579-31891598 None:intergenic 35.0%
TGTTGAGAGATCAAAAGCTA+TGG - chr1.1:31891726-31891745 MS.gene037929:CDS 35.0%
! GTTGACAACAATGGATTTAG+TGG + chr1.1:31891002-31891021 None:intergenic 35.0%
! GTTTTATGAGGGTGAAAATG+TGG + chr1.1:31891175-31891194 None:intergenic 35.0%
! TTTTCCGACTCTTCTATCAA+TGG - chr1.1:31891805-31891824 MS.gene037929:CDS 35.0%
!! ATAATTGAGAGAGGTGTTGT+TGG + chr1.1:31891082-31891101 None:intergenic 35.0%
!! TAATTGAGAGAGGTGTTGTT+GGG + chr1.1:31891081-31891100 None:intergenic 35.0%
!! TTTGGGTTTGGGTTTTATGA+GGG + chr1.1:31891186-31891205 None:intergenic 35.0%
!!! GGTTTTTTATTGAGGGGTTT+TGG + chr1.1:31890981-31891000 None:intergenic 35.0%
!!! TTTTGGGTTTGGGTTTTATG+AGG + chr1.1:31891187-31891206 None:intergenic 35.0%
AAGGGAAGGATAATTGAGAG+AGG + chr1.1:31891091-31891110 None:intergenic 40.0%
ACATCTTTATACTCCAGCAG+AGG - chr1.1:31891898-31891917 MS.gene037929:CDS 40.0%
AGAAGAGCGGAATACAATGT+TGG + chr1.1:31891475-31891494 None:intergenic 40.0%
CTATCAATGGAGGACTTGAA+GGG - chr1.1:31891818-31891837 MS.gene037929:CDS 40.0%
CTGACTAGAGTTAATTGGAC+CGG - chr1.1:31891857-31891876 MS.gene037929:CDS 40.0%
CTGGAGTATAAAGATGTGGA+TGG + chr1.1:31891895-31891914 None:intergenic 40.0%
CTTGAACCGGAAACATACAA+AGG - chr1.1:31891700-31891719 MS.gene037929:CDS 40.0%
GAAGAGCGGAATACAATGTT+GGG + chr1.1:31891474-31891493 None:intergenic 40.0%
GGGAGATAAGTGCAAAGTAT+TGG + chr1.1:31891454-31891473 None:intergenic 40.0%
GTCGGAAAATAATGTTCCTC+TGG + chr1.1:31891794-31891813 None:intergenic 40.0%
TATCAATGGAGGACTTGAAG+GGG - chr1.1:31891819-31891838 MS.gene037929:CDS 40.0%
TCCTCCATTGATAGAAGAGT+CGG + chr1.1:31891812-31891831 None:intergenic 40.0%
TCTATCAATGGAGGACTTGA+AGG - chr1.1:31891817-31891836 MS.gene037929:CDS 40.0%
TCTGCTGGAGTATAAAGATG+TGG + chr1.1:31891899-31891918 None:intergenic 40.0%
TGGAGAGAATGTAATGTTGC+CGG - chr1.1:31891634-31891653 MS.gene037929:CDS 40.0%
! AGGAAGAGGAAAGCGATTTT+GGG + chr1.1:31891203-31891222 None:intergenic 40.0%
! AGGTTCCGTTTGAGGATTTT+CGG - chr1.1:31891657-31891676 MS.gene037929:CDS 40.0%
! TTGAAGGGATGAAACGGTTT+TGG + chr1.1:31891349-31891368 None:intergenic 40.0%
!! AGTGCAAAGTATTGGTTCAG+TGG + chr1.1:31891446-31891465 None:intergenic 40.0%
!! GTGCAAAGTATTGGTTCAGT+GGG + chr1.1:31891445-31891464 None:intergenic 40.0%
!! TTTTTCCCATAAAGGTGCGA+AGG + chr1.1:31891243-31891262 None:intergenic 40.0%
!!! AACGTTTGGTGGGTTTTGAA+GGG + chr1.1:31891364-31891383 None:intergenic 40.0%
!!! AGGAAAGCGATTTTGGGTTT+GGG + chr1.1:31891197-31891216 None:intergenic 40.0%
!!! TAACGTTTGGTGGGTTTTGA+AGG + chr1.1:31891365-31891384 None:intergenic 40.0%
!!! TGCTGATGACGTCATTTTTC+AGG - chr1.1:31892024-31892043 MS.gene037929:CDS 40.0%
!!! TGGGTTTTGAAGGGATGAAA+CGG + chr1.1:31891355-31891374 None:intergenic 40.0%
AAATCCTCAAACGGAACCTC+CGG + chr1.1:31891656-31891675 None:intergenic 45.0%
ACATTCCGCTGAGAATTTCC+TGG + chr1.1:31891984-31892003 None:intergenic 45.0%
AGAGAATGTAATGTTGCCGG+AGG - chr1.1:31891637-31891656 MS.gene037929:CDS 45.0%
ATTCGCCAGGAAATTCTCAG+CGG - chr1.1:31891976-31891995 MS.gene037929:CDS 45.0%
CAATATAGCTGGGGTACAGT+AGG + chr1.1:31891568-31891587 None:intergenic 45.0%
CATGGACGTAGATGTTGAAG+AGG + chr1.1:31891286-31891305 None:intergenic 45.0%
CCAACCCGAAAATCCTCAAA+CGG + chr1.1:31891665-31891684 None:intergenic 45.0%
GATGGAGAGTAACGTTTGGT+GGG + chr1.1:31891374-31891393 None:intergenic 45.0%
GGGTGAGAAAGAGGATAAGT+GGG + chr1.1:31891061-31891080 None:intergenic 45.0%
GTTCAGTGGGTCATCTAAGA+GGG + chr1.1:31891432-31891451 None:intergenic 45.0%
TATGAGGGTGAAAATGTGGG+TGG + chr1.1:31891171-31891190 None:intergenic 45.0%
TCCGACTCTTCTATCAATGG+AGG - chr1.1:31891808-31891827 MS.gene037929:CDS 45.0%
TGATGGAGAGTAACGTTTGG+TGG + chr1.1:31891375-31891394 None:intergenic 45.0%
TGGGTGAGAAAGAGGATAAG+TGG + chr1.1:31891062-31891081 None:intergenic 45.0%
TTACTCTCCATCACTCATCG+CGG - chr1.1:31891382-31891401 MS.gene037929:CDS 45.0%
! AATTGGACCGGTTCTGTCTA+TGG - chr1.1:31891869-31891888 MS.gene037929:CDS 45.0%
! GAGGAAGAGGAAAGCGATTT+TGG + chr1.1:31891204-31891223 None:intergenic 45.0%
! GAGTGATGGAGAGTAACGTT+TGG + chr1.1:31891378-31891397 None:intergenic 45.0%
! GGTTCCGTTTGAGGATTTTC+GGG - chr1.1:31891658-31891677 MS.gene037929:CDS 45.0%
!!! AGAGCTTTTTCGTCAGCTGA+GGG - chr1.1:31891928-31891947 MS.gene037929:CDS 45.0%
!!! GAGGAAAGCGATTTTGGGTT+TGG + chr1.1:31891198-31891217 None:intergenic 45.0%
ACCTGACCTTCGCACCTTTA+TGG - chr1.1:31891234-31891253 MS.gene037929:CDS 50.0%
CATCTAAGAGGGCAGATGCT+AGG + chr1.1:31891421-31891440 None:intergenic 50.0%
CCTGACCTTCGCACCTTTAT+GGG - chr1.1:31891235-31891254 MS.gene037929:CDS 50.0%
CTCAGCTGACGAAAAAGCTC+TGG + chr1.1:31891929-31891948 None:intergenic 50.0%
GGACGTAGATGTTGAAGAGG+TGG + chr1.1:31891283-31891302 None:intergenic 50.0%
GGTTCAGTGGGTCATCTAAG+AGG + chr1.1:31891433-31891452 None:intergenic 50.0%
TGCGAAGGTCAGGTTAGAGT+TGG + chr1.1:31891228-31891247 None:intergenic 50.0%
TGGATGGCCATAGACAGAAC+CGG + chr1.1:31891879-31891898 None:intergenic 50.0%
! GAAAATGTGGGTGGTGGTGT+GGG + chr1.1:31891162-31891181 None:intergenic 50.0%
! TGAAAATGTGGGTGGTGGTG+TGG + chr1.1:31891163-31891182 None:intergenic 50.0%
!! AGGTCAGGTTAGAGTTGGTG+AGG + chr1.1:31891223-31891242 None:intergenic 50.0%
!! GGTGTTGTTGGGTGAGAAAG+AGG + chr1.1:31891070-31891089 None:intergenic 50.0%
!! GGTTAGAGTTGGTGAGGAAG+AGG + chr1.1:31891217-31891236 None:intergenic 50.0%
!!! ACGGTTTTGGAAGACACCAC+CGG + chr1.1:31891336-31891355 None:intergenic 50.0%
!!! CAGAGCTTTTTCGTCAGCTG+AGG - chr1.1:31891927-31891946 MS.gene037929:CDS 50.0%
!!! CCGTTTGAGGATTTTCGGGT+TGG - chr1.1:31891662-31891681 MS.gene037929:CDS 50.0%
AGAGGGCAGATGCTAGGAGA+CGG + chr1.1:31891415-31891434 None:intergenic 55.0%
GAGGGTGAAAATGTGGGTGG+TGG + chr1.1:31891168-31891187 None:intergenic 55.0%
! CCCATAAAGGTGCGAAGGTC+AGG + chr1.1:31891238-31891257 None:intergenic 55.0%
!! CATAGGTGGTGGGATCTGCA+TGG + chr1.1:31891304-31891323 None:intergenic 55.0%
!! GTCAGCTGAGGGTGTCCAAT+TGG - chr1.1:31891939-31891958 MS.gene037929:CDS 55.0%
!!! CGGTTTTGGAAGACACCACC+GGG + chr1.1:31891335-31891354 None:intergenic 55.0%
!!! GGTTTTGGAAGACACCACCG+GGG + chr1.1:31891334-31891353 None:intergenic 55.0%
!!! GTTTTGGAAGACACCACCGG+GGG + chr1.1:31891333-31891352 None:intergenic 55.0%
ACCACCTATGTCGTCTCCCC+CGG - chr1.1:31891314-31891333 MS.gene037929:CDS 60.0%
GGGGAGACGACATAGGTGGT+GGG + chr1.1:31891314-31891333 None:intergenic 60.0%
GTTGCCGGAGGTTCCGTTTG+AGG - chr1.1:31891649-31891668 MS.gene037929:CDS 60.0%
ACCACCGGGGGAGACGACAT+AGG + chr1.1:31891321-31891340 None:intergenic 65.0%
ACCGGGGGAGACGACATAGG+TGG + chr1.1:31891318-31891337 None:intergenic 65.0%
ACCTATGTCGTCTCCCCCGG+TGG - chr1.1:31891317-31891336 MS.gene037929:CDS 65.0%
AGGGTGAGGTCGTTGGCGTC+GGG + chr1.1:31891122-31891141 None:intergenic 65.0%
GAGGGTGAGGTCGTTGGCGT+CGG + chr1.1:31891123-31891142 None:intergenic 65.0%
GCGGAAGAGGGTGAGGTCGT+TGG + chr1.1:31891129-31891148 None:intergenic 65.0%
GGCAGATGCTAGGAGACGGC+GGG + chr1.1:31891411-31891430 None:intergenic 65.0%
GGGCAGATGCTAGGAGACGG+CGG + chr1.1:31891412-31891431 None:intergenic 65.0%
GGGGGAGACGACATAGGTGG+TGG + chr1.1:31891315-31891334 None:intergenic 65.0%
GTCGGGGGAGGAGAAAGGGA+AGG + chr1.1:31891105-31891124 None:intergenic 65.0%
! AGCTCTGGCGACACCTCTGC+TGG + chr1.1:31891914-31891933 None:intergenic 65.0%
! GTGGGTGGTGGTGTGGGTTG+TGG + chr1.1:31891156-31891175 None:intergenic 65.0%
! TGGCGTCGGGGGAGGAGAAA+GGG + chr1.1:31891109-31891128 None:intergenic 65.0%
! TGGTGGTGTGGGTTGTGGCG+CGG + chr1.1:31891151-31891170 None:intergenic 65.0%
! TTGGCGTCGGGGGAGGAGAA+AGG + chr1.1:31891110-31891129 None:intergenic 65.0%
CGGGCAGCCGCGATGAGTGA+TGG + chr1.1:31891392-31891411 None:intergenic 70.0%
GGGTGAGGTCGTTGGCGTCG+GGG + chr1.1:31891121-31891140 None:intergenic 70.0%
GGTTGTGGCGCGGCGGAAGA+GGG + chr1.1:31891141-31891160 None:intergenic 70.0%
! GGTGAGGTCGTTGGCGTCGG+GGG + chr1.1:31891120-31891139 None:intergenic 70.0%
! TGGTGTGGGTTGTGGCGCGG+CGG + chr1.1:31891148-31891167 None:intergenic 70.0%
GGGTTGTGGCGCGGCGGAAG+AGG + chr1.1:31891142-31891161 None:intergenic 75.0%
TGGCGCGGCGGAAGAGGGTG+AGG + chr1.1:31891136-31891155 None:intergenic 75.0%
! GAGGTCGTTGGCGTCGGGGG+AGG + chr1.1:31891117-31891136 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 31890963 31892051 31890963 ID=MS.gene037929
chr1.1 mRNA 31890963 31892051 31890963 ID=MS.gene037929.t1;Parent=MS.gene037929
chr1.1 exon 31890963 31892051 31890963 ID=MS.gene037929.t1.exon1;Parent=MS.gene037929.t1
chr1.1 CDS 31890963 31892051 31890963 ID=cds.MS.gene037929.t1;Parent=MS.gene037929.t1
Gene Sequence

>MS.gene037929

ATGGCAAAATTAACCCCAAAACCCCTCAATAAAAAACCACTAAATCCATTGTTGTCAACACCAATTATTGTCTATCTAGCTCTCATCATCTCTCTCCCACTTATCCTCTTTCTCACCCAACAACACCTCTCTCAATTATCCTTCCCTTTCTCCTCCCCCGACGCCAACGACCTCACCCTCTTCCGCCGCGCCACAACCCACACCACCACCCACATTTTCACCCTCATAAAACCCAAACCCAAAATCGCTTTCCTCTTCCTCACCAACTCTAACCTGACCTTCGCACCTTTATGGGAAAAATTCTTTGTTAGAAACAACCACCTCTTCAACATCTACGTCCATGCAGATCCCACCACCTATGTCGTCTCCCCCGGTGGTGTCTTCCAAAACCGTTTCATCCCTTCAAAACCCACCAAACGTTACTCTCCATCACTCATCGCGGCTGCCCGCCGTCTCCTAGCATCTGCCCTCTTAGATGACCCACTGAACCAATACTTTGCACTTATCTCCCAACATTGTATTCCGCTCTTCTCGTTTCAATTCATTTATAACTACCTTTTTAAAAATCAATTAAAGTCATTTACAAATTCCTCTGAATTTAACCTACTGTACCCCAGCTATATTGAGATTCTCTCAGAGGCAGAAAATATCAATATACGGTATAATGCTCGTGGAGAGAATGTAATGTTGCCGGAGGTTCCGTTTGAGGATTTTCGGGTTGGTTCACAATTTTTTATCTTGAACCGGAAACATACAAAGGTTGTGTTGAGAGATCAAAAGCTATGGAACAAGTTTCAGATTCCATGTATAAATAAGTATTATTGTTATCCAGAGGAACATTATTTTCCGACTCTTCTATCAATGGAGGACTTGAAGGGGTGTACTTGTTTTACACTGACTAGAGTTAATTGGACCGGTTCTGTCTATGGCCATCCACATCTTTATACTCCAGCAGAGGTGTCGCCAGAGCTTTTTCGTCAGCTGAGGGTGTCCAATTGGAGTTATTCATATCTATTCGCCAGGAAATTCTCAGCGGAATGTCTTGCTCCGTTGATGAATATTGCTGATGACGTCATTTTTCAGGATTGA
Protein sequence

>MS.gene037929.t1

MAKLTPKPLNKKPLNPLLSTPIIVYLALIISLPLILFLTQQHLSQLSFPFSSPDANDLTLFRRATTHTTTHIFTLIKPKPKIAFLFLTNSNLTFAPLWEKFFVRNNHLFNIYVHADPTTYVVSPGGVFQNRFIPSKPTKRYSPSLIAAARRLLASALLDDPLNQYFALISQHCIPLFSFQFIYNYLFKNQLKSFTNSSEFNLLYPSYIEILSEAENINIRYNARGENVMLPEVPFEDFRVGSQFFILNRKHTKVVLRDQKLWNKFQIPCINKYYCYPEEHYFPTLLSMEDLKGCTCFTLTRVNWTGSVYGHPHLYTPAEVSPELFRQLRVSNWSYSYLFARKFSAECLAPLMNIADDVIFQD