Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038210.t1 | AET00244.2 | 97.9 | 286 | 6 | 0 | 1 | 286 | 1 | 286 | 2.40E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038210.t1 | Q56XY2 | 80.9 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.8e-136 | 486.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038210.t1 | G7KCW9 | 97.9 | 286 | 6 | 0 | 1 | 286 | 1 | 286 | 1.8e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038210 | MS.gene34135 | PPI |
| MS.gene70743 | MS.gene038210 | PPI |
| MS.gene038210 | MS.gene006260 | PPI |
| MS.gene25822 | MS.gene038210 | PPI |
| MS.gene038210 | MS.gene49124 | PPI |
| MS.gene038210 | MS.gene061152 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038210.t1 | MTR_5g089950 | 97.222 | 288 | 8 | 0 | 1 | 288 | 1 | 288 | 0.0 | 576 |
| MS.gene038210.t1 | MTR_8g062340 | 96.154 | 286 | 11 | 0 | 1 | 286 | 1 | 286 | 0.0 | 569 |
| MS.gene038210.t1 | MTR_8g062340 | 96.099 | 282 | 11 | 0 | 1 | 282 | 1 | 282 | 0.0 | 560 |
| MS.gene038210.t1 | MTR_3g080040 | 38.521 | 257 | 150 | 4 | 1 | 256 | 1 | 250 | 1.34e-55 | 181 |
| MS.gene038210.t1 | MTR_1g100240 | 30.159 | 189 | 123 | 4 | 6 | 190 | 61 | 244 | 1.28e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038210.t1 | AT5G22370 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 1.92e-170 | 474 |
| MS.gene038210.t1 | AT5G22370 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 1.92e-170 | 474 |
| MS.gene038210.t1 | AT5G22370 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 1.92e-170 | 474 |
| MS.gene038210.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 7.46e-57 | 184 |
| MS.gene038210.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 7.46e-57 | 184 |
| MS.gene038210.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 7.46e-57 | 184 |
| MS.gene038210.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 7.46e-57 | 184 |
| MS.gene038210.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 7.46e-57 | 184 |
| MS.gene038210.t1 | AT4G12790 | 39.683 | 252 | 144 | 4 | 1 | 251 | 1 | 245 | 7.46e-57 | 184 |
| MS.gene038210.t1 | AT4G21800 | 28.877 | 187 | 128 | 4 | 6 | 190 | 45 | 228 | 2.00e-17 | 82.0 |
| MS.gene038210.t1 | AT4G21800 | 28.877 | 187 | 128 | 4 | 6 | 190 | 45 | 228 | 2.00e-17 | 82.0 |
Find 50 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATTTCCTCAATCTTAT+TGG | 0.152456 | 5.4:+71055875 | MS.gene038210:CDS |
| GAAGGTTGCCGTTATCAATT+TGG | 0.236715 | 5.4:+71055901 | MS.gene038210:CDS |
| CAAAGAGAGTGTAGGGAATT+TGG | 0.256600 | 5.4:+71058088 | MS.gene038210:CDS |
| CAACATTCTCTTGGTCCTAA+TGG | 0.275811 | 5.4:+71056102 | MS.gene038210:CDS |
| GTAATTGGTCCTCCTGGTTC+TGG | 0.317452 | 5.4:+71055827 | MS.gene038210:CDS |
| AACATTCTCTTGGTCCTAAT+GGG | 0.318429 | 5.4:+71056103 | MS.gene038210:CDS |
| GAGTTTCATGACGACATTCT+TGG | 0.336741 | 5.4:-71057176 | None:intergenic |
| CATATGTAGCATTGTGGATA+AGG | 0.347185 | 5.4:-71057374 | None:intergenic |
| CTGGCGTACCTGAATATCTA+AGG | 0.360898 | 5.4:-71057990 | None:intergenic |
| GTGTTTGGGCAAGTAGTAAT+TGG | 0.379485 | 5.4:+71055812 | MS.gene038210:CDS |
| CTTATCCACAATGCTACATA+TGG | 0.405899 | 5.4:+71057375 | MS.gene038210:CDS |
| TTGCTATGGGAGCTCCTGAT+TGG | 0.412468 | 5.4:+71058183 | MS.gene038210:CDS |
| GCAGTTAGCGGCAGTTCATT+TGG | 0.420246 | 5.4:+71057297 | MS.gene038210:intron |
| TGCTATGGGAGCTCCTGATT+GGG | 0.444795 | 5.4:+71058184 | MS.gene038210:CDS |
| TATCTATAATAATCCCAATC+AGG | 0.464822 | 5.4:-71058197 | None:intergenic |
| ATCCGCACTCTGCTAAGTTC+AGG | 0.468701 | 5.4:+71057629 | MS.gene038210:CDS |
| AGCAGGTCTTGTATACTGTA+TGG | 0.470732 | 5.4:+71056896 | MS.gene038210:intron |
| CCTTCCTTCCAATAAGATTG+AGG | 0.475744 | 5.4:-71055883 | None:intergenic |
| CCTCAATCTTATTGGAAGGA+AGG | 0.477925 | 5.4:+71055883 | MS.gene038210:CDS |
| CATAAAGAAATTAAACTTGA+GGG | 0.478237 | 5.4:+71057198 | MS.gene038210:CDS |
| TGAGTTTAGCAAGATTGCTA+TGG | 0.481761 | 5.4:+71058169 | MS.gene038210:CDS |
| CAAGTAGTAATTGGTCCTCC+TGG | 0.490589 | 5.4:+71055821 | MS.gene038210:CDS |
| TACAGGACAAAGAGAGTGTA+GGG | 0.495599 | 5.4:+71058081 | MS.gene038210:intron |
| ATTGATTTAATTGAGAGCTA+CGG | 0.505811 | 5.4:+71057427 | MS.gene038210:CDS |
| ATGTAATGACCTTTCAGAAG+AGG | 0.513803 | 5.4:-71056963 | None:intergenic |
| CTCATCTTTGTAGTGACCCT+GGG | 0.515241 | 5.4:+71057326 | MS.gene038210:CDS |
| TACGGTAATGAATCATTAGC+TGG | 0.515679 | 5.4:-71055926 | None:intergenic |
| GAGTTTAGCAAGATTGCTAT+GGG | 0.516035 | 5.4:+71058170 | MS.gene038210:CDS |
| AGCTGGATCCAAATTGATAA+CGG | 0.523001 | 5.4:-71055909 | None:intergenic |
| ATTGAGAGCTACGGAAAGCT+AGG | 0.526200 | 5.4:+71057436 | MS.gene038210:CDS |
| AATGCACTGATGTACTTCCC+AGG | 0.529333 | 5.4:-71057343 | None:intergenic |
| GTCATGATACAACATTCTCT+TGG | 0.532392 | 5.4:+71056093 | MS.gene038210:CDS |
| GCTAGCAAATATGTACCCAT+TGG | 0.534659 | 5.4:-71058129 | None:intergenic |
| AGCTGATAGACAAAACCAAT+GGG | 0.538423 | 5.4:+71058114 | MS.gene038210:CDS |
| GCTCATCTTTGTAGTGACCC+TGG | 0.547978 | 5.4:+71057325 | MS.gene038210:CDS |
| ATTTCCTCAATCTTATTGGA+AGG | 0.572574 | 5.4:+71055879 | MS.gene038210:CDS |
| TTACAGGACAAAGAGAGTGT+AGG | 0.576655 | 5.4:+71058080 | MS.gene038210:intron |
| AAGCTGATAGACAAAACCAA+TGG | 0.581118 | 5.4:+71058113 | MS.gene038210:CDS |
| TCATAAAGAAATTAAACTTG+AGG | 0.584514 | 5.4:+71057197 | MS.gene038210:CDS |
| ACATTCTCTTGGTCCTAATG+GGG | 0.590405 | 5.4:+71056104 | MS.gene038210:CDS |
| TTGACAAGACATTTATGTGG+GGG | 0.593918 | 5.4:-71057402 | None:intergenic |
| AAATTGAAACCTCTTCTGAA+AGG | 0.610094 | 5.4:+71056954 | MS.gene038210:CDS |
| TGTGAAGTCGTTGAACACTA+CGG | 0.628659 | 5.4:+71057950 | MS.gene038210:CDS |
| ATGCACTGATGTACTTCCCA+GGG | 0.635507 | 5.4:-71057342 | None:intergenic |
| GAGTTCCATATGTAGCATTG+TGG | 0.646041 | 5.4:-71057380 | None:intergenic |
| TTTGACAAGACATTTATGTG+GGG | 0.662064 | 5.4:-71057403 | None:intergenic |
| TGATTGTGCTGTCAACATTG+AGG | 0.665600 | 5.4:+71056050 | MS.gene038210:CDS |
| CACCTGAACTTAGCAGAGTG+CGG | 0.669126 | 5.4:-71057631 | None:intergenic |
| CATTCTCTTGGTCCTAATGG+GGG | 0.674832 | 5.4:+71056105 | MS.gene038210:CDS |
| TATTTGCAGGAAGCTCACAA+AGG | 0.713643 | 5.4:+71057922 | MS.gene038210:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATTTTTATAAGCTTTA+TGG | + | chr5.4:71056707-71056726 | MS.gene038210:intron | 15.0% |
| !! | AAACTACTATTATTCCTATT+TGG | + | chr5.4:71057040-71057059 | MS.gene038210:intron | 20.0% |
| !! | CAACTTAATTATGTACTTAT+AGG | + | chr5.4:71056596-71056615 | MS.gene038210:intron | 20.0% |
| !! | CATAAAGAAATTAAACTTGA+GGG | + | chr5.4:71057198-71057217 | MS.gene038210:CDS | 20.0% |
| !! | CATATCTATATTCAATATCA+AGG | - | chr5.4:71056032-71056051 | None:intergenic | 20.0% |
| !! | TCATAAAGAAATTAAACTTG+AGG | + | chr5.4:71057197-71057216 | MS.gene038210:CDS | 20.0% |
| !!! | AAATGCATTTTTTTATAAGC+TGG | + | chr5.4:71057488-71057507 | MS.gene038210:intron | 20.0% |
| !!! | AATCTATTGTTCTTTTGAAA+GGG | + | chr5.4:71056528-71056547 | MS.gene038210:intron | 20.0% |
| !!! | ATGCTTAAATTAATTGATTC+TGG | + | chr5.4:71056002-71056021 | MS.gene038210:intron | 20.0% |
| !!! | ATTCTTTTTTTCTCCTTTTA+AGG | + | chr5.4:71056139-71056158 | MS.gene038210:intron | 20.0% |
| !!! | TTAGTTCTTAAAATAAGACA+TGG | - | chr5.4:71057259-71057278 | None:intergenic | 20.0% |
| ! | AAATCAGAAACAATTTGACA+TGG | - | chr5.4:71057838-71057857 | None:intergenic | 25.0% |
| ! | AACTATTACATGTGTTTACA+TGG | + | chr5.4:71056410-71056429 | MS.gene038210:intron | 25.0% |
| ! | AAGAATAAGATTGAAAGAGA+AGG | - | chr5.4:71055957-71055976 | None:intergenic | 25.0% |
| ! | AGTGTATTTAAGGATGATTT+AGG | - | chr5.4:71057017-71057036 | None:intergenic | 25.0% |
| ! | ATCCTTCTTAAATCCTTAAA+AGG | - | chr5.4:71056155-71056174 | None:intergenic | 25.0% |
| ! | ATCTAGAGAAAAATATTGAC+TGG | + | chr5.4:71056922-71056941 | MS.gene038210:CDS | 25.0% |
| ! | ATGAAAAAACTAAGCATATC+TGG | - | chr5.4:71058012-71058031 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAACAATAGAT+TGG | - | chr5.4:71056529-71056548 | None:intergenic | 25.0% |
| ! | GAATTATGTGTTATATTTGC+AGG | + | chr5.4:71057909-71057928 | MS.gene038210:intron | 25.0% |
| ! | GATTTAGAGATTATTGAGTT+GGG | + | chr5.4:71056172-71056191 | MS.gene038210:intron | 25.0% |
| ! | TATCTATAATAATCCCAATC+AGG | - | chr5.4:71058200-71058219 | None:intergenic | 25.0% |
| ! | TCATAACCAATAGTACTATT+GGG | + | chr5.4:71056287-71056306 | MS.gene038210:intron | 25.0% |
| ! | TGATATATGATACCACATTA+TGG | + | chr5.4:71056203-71056222 | MS.gene038210:intron | 25.0% |
| ! | TTGCATGAGAAAAGAAAAAA+AGG | - | chr5.4:71058224-71058243 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr5.4:71056585-71056604 | None:intergenic | 25.0% |
| !! | ATTGATTTAATTGAGAGCTA+CGG | + | chr5.4:71057427-71057446 | MS.gene038210:CDS | 25.0% |
| !! | CAATCTATTGTTCTTTTGAA+AGG | + | chr5.4:71056527-71056546 | MS.gene038210:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr5.4:71056584-71056603 | None:intergenic | 25.0% |
| !! | TTTTACAACCTTAGATATTC+AGG | + | chr5.4:71057982-71058001 | MS.gene038210:CDS | 25.0% |
| !! | TTTTGACAAGACATTTATGT+GGG | - | chr5.4:71057407-71057426 | None:intergenic | 25.0% |
| !! | TTTTTGACAAGACATTTATG+TGG | - | chr5.4:71057408-71057427 | None:intergenic | 25.0% |
| !!! | AAAAAATGCATTTTAACCCT+TGG | - | chr5.4:71057481-71057500 | None:intergenic | 25.0% |
| !!! | TAATAAAAGGTATTGAGGTA+GGG | - | chr5.4:71056558-71056577 | None:intergenic | 25.0% |
| !!! | TCCATTTTTTTTAGCTTATC+TGG | - | chr5.4:71056806-71056825 | None:intergenic | 25.0% |
| !!! | TTAATAAAAGGTATTGAGGT+AGG | - | chr5.4:71056559-71056578 | None:intergenic | 25.0% |
| AAATTGAAACCTCTTCTGAA+AGG | + | chr5.4:71056954-71056973 | MS.gene038210:CDS | 30.0% | |
| AACTATTACACTCAGAAGAA+TGG | - | chr5.4:71057690-71057709 | None:intergenic | 30.0% | |
| ATAAGTACTAGTGAGATTGT+TGG | - | chr5.4:71056782-71056801 | None:intergenic | 30.0% | |
| ATTTCCTCAATCTTATTGGA+AGG | + | chr5.4:71055879-71055898 | MS.gene038210:CDS | 30.0% | |
| CAATTTGACATGGTATGAAA+TGG | - | chr5.4:71057828-71057847 | None:intergenic | 30.0% | |
| GAAGAAAAAATAGTTCCACT+TGG | - | chr5.4:71057147-71057166 | None:intergenic | 30.0% | |
| GCCAGATAAGCTAAAAAAAA+TGG | + | chr5.4:71056802-71056821 | MS.gene038210:intron | 30.0% | |
| GGAAAAACTACTTACTGTAA+TGG | + | chr5.4:71055848-71055867 | MS.gene038210:CDS | 30.0% | |
| GGATTTAGAGATTATTGAGT+TGG | + | chr5.4:71056171-71056190 | MS.gene038210:intron | 30.0% | |
| GTCATAACCAATAGTACTAT+TGG | + | chr5.4:71056286-71056305 | MS.gene038210:intron | 30.0% | |
| TCTCATTTCCTCAATCTTAT+TGG | + | chr5.4:71055875-71055894 | MS.gene038210:CDS | 30.0% | |
| TGTTTACATGGCAATGTTAT+TGG | + | chr5.4:71056422-71056441 | MS.gene038210:intron | 30.0% | |
| TGTTTGTGTTAGTGTTTCAT+AGG | + | chr5.4:71056454-71056473 | MS.gene038210:intron | 30.0% | |
| TTGAAAGAGAAGGATACATA+CGG | - | chr5.4:71055947-71055966 | None:intergenic | 30.0% | |
| TTTGACAAGACATTTATGTG+GGG | - | chr5.4:71057406-71057425 | None:intergenic | 30.0% | |
| ! | AAGTTGGATTTTCCTTTTAC+AGG | + | chr5.4:71058064-71058083 | MS.gene038210:intron | 30.0% |
| ! | AGAGAAAAATATTGACTGGT+TGG | + | chr5.4:71056926-71056945 | MS.gene038210:CDS | 30.0% |
| ! | ATAGTTTTTCTGAGTGTGAT+AGG | + | chr5.4:71057704-71057723 | MS.gene038210:intron | 30.0% |
| ! | GTAGTTTGTGAGTGTATTTA+AGG | - | chr5.4:71057027-71057046 | None:intergenic | 30.0% |
| ! | TATTTACTCTTCGATTTTCC+TGG | + | chr5.4:71057121-71057140 | MS.gene038210:CDS | 30.0% |
| ! | TGTTTCTGATTTCATCCTTT+GGG | + | chr5.4:71057846-71057865 | MS.gene038210:intron | 30.0% |
| !! | CTCCTTTTAAGGATTTAAGA+AGG | + | chr5.4:71056150-71056169 | MS.gene038210:intron | 30.0% |
| !! | GGCTTTAATAAAAGGTATTG+AGG | - | chr5.4:71056563-71056582 | None:intergenic | 30.0% |
| !! | TTCTGTTGAAGTTCTAAAGT+TGG | + | chr5.4:71058048-71058067 | MS.gene038210:intron | 30.0% |
| !! | TTGTTTCTGATTTCATCCTT+TGG | + | chr5.4:71057845-71057864 | MS.gene038210:intron | 30.0% |
| AACATTCTCTTGGTCCTAAT+GGG | + | chr5.4:71056103-71056122 | MS.gene038210:CDS | 35.0% | |
| AAGCTGATAGACAAAACCAA+TGG | + | chr5.4:71058113-71058132 | MS.gene038210:CDS | 35.0% | |
| AGCTGATAGACAAAACCAAT+GGG | + | chr5.4:71058114-71058133 | MS.gene038210:CDS | 35.0% | |
| AGCTGGATCCAAATTGATAA+CGG | - | chr5.4:71055912-71055931 | None:intergenic | 35.0% | |
| ATGTAATGACCTTTCAGAAG+AGG | - | chr5.4:71056966-71056985 | None:intergenic | 35.0% | |
| CATATGTAGCATTGTGGATA+AGG | - | chr5.4:71057377-71057396 | None:intergenic | 35.0% | |
| CTAGAGTAGTTTAGCCAAAT+AGG | - | chr5.4:71057057-71057076 | None:intergenic | 35.0% | |
| CTTATCCACAATGCTACATA+TGG | + | chr5.4:71057375-71057394 | MS.gene038210:CDS | 35.0% | |
| GAGTTTAGCAAGATTGCTAT+GGG | + | chr5.4:71058170-71058189 | MS.gene038210:CDS | 35.0% | |
| GCACGTCTGTATAAAAATCA+AGG | - | chr5.4:71057573-71057592 | None:intergenic | 35.0% | |
| GTCATGATACAACATTCTCT+TGG | + | chr5.4:71056093-71056112 | MS.gene038210:CDS | 35.0% | |
| TAACCAATAGTACTATTGGG+TGG | + | chr5.4:71056290-71056309 | MS.gene038210:intron | 35.0% | |
| TACGGTAATGAATCATTAGC+TGG | - | chr5.4:71055929-71055948 | None:intergenic | 35.0% | |
| TGAGTTTAGCAAGATTGCTA+TGG | + | chr5.4:71058169-71058188 | MS.gene038210:CDS | 35.0% | |
| TGTAATTACTTGAGTGCCAA+GGG | + | chr5.4:71057462-71057481 | MS.gene038210:intron | 35.0% | |
| TGTTAGTGTTTCATAGGTGA+TGG | + | chr5.4:71056460-71056479 | MS.gene038210:intron | 35.0% | |
| TGTTCATTCTATGCAGTTAG+CGG | + | chr5.4:71057285-71057304 | MS.gene038210:intron | 35.0% | |
| TTGACAAGACATTTATGTGG+GGG | - | chr5.4:71057405-71057424 | None:intergenic | 35.0% | |
| TTTACTTGTGTTGTACAAGC+AGG | + | chr5.4:71056879-71056898 | MS.gene038210:intron | 35.0% | |
| ! | CCAAACAGGGCTTTAATAAA+AGG | - | chr5.4:71056571-71056590 | None:intergenic | 35.0% |
| ! | CCTTTTATTAAAGCCCTGTT+TGG | + | chr5.4:71056568-71056587 | MS.gene038210:intron | 35.0% |
| ! | TAAGTAGTTTTTCCAGAACC+AGG | - | chr5.4:71055842-71055861 | None:intergenic | 35.0% |
| !! | AGAGATTATTGAGTTGGGTA+GGG | + | chr5.4:71056177-71056196 | MS.gene038210:intron | 35.0% |
| !! | TAGAGATTATTGAGTTGGGT+AGG | + | chr5.4:71056176-71056195 | MS.gene038210:intron | 35.0% |
| AAAAATAGTTCCACTTGGCC+AGG | - | chr5.4:71057142-71057161 | None:intergenic | 40.0% | |
| ACATTCTCTTGGTCCTAATG+GGG | + | chr5.4:71056104-71056123 | MS.gene038210:CDS | 40.0% | |
| CAACATTCTCTTGGTCCTAA+TGG | + | chr5.4:71056102-71056121 | MS.gene038210:CDS | 40.0% | |
| CACTCTCTTTGTCCTGTAAA+AGG | - | chr5.4:71058079-71058098 | None:intergenic | 40.0% | |
| CCTCAATCTTATTGGAAGGA+AGG | + | chr5.4:71055883-71055902 | MS.gene038210:CDS | 40.0% | |
| CCTTCCTTCCAATAAGATTG+AGG | - | chr5.4:71055886-71055905 | None:intergenic | 40.0% | |
| CTAAGTTCAGGTGTGATTTG+TGG | + | chr5.4:71057641-71057660 | MS.gene038210:intron | 40.0% | |
| CTGTAATTACTTGAGTGCCA+AGG | + | chr5.4:71057461-71057480 | MS.gene038210:intron | 40.0% | |
| GAAGGTTGCCGTTATCAATT+TGG | + | chr5.4:71055901-71055920 | MS.gene038210:CDS | 40.0% | |
| GAGATTGTTGGATGAACTTC+TGG | - | chr5.4:71056770-71056789 | None:intergenic | 40.0% | |
| GAGTTCCATATGTAGCATTG+TGG | - | chr5.4:71057383-71057402 | None:intergenic | 40.0% | |
| GAGTTTCATGACGACATTCT+TGG | - | chr5.4:71057179-71057198 | None:intergenic | 40.0% | |
| GCTAGCAAATATGTACCCAT+TGG | - | chr5.4:71058132-71058151 | None:intergenic | 40.0% | |
| GTGTTTGGGCAAGTAGTAAT+TGG | + | chr5.4:71055812-71055831 | MS.gene038210:CDS | 40.0% | |
| TAGAGTTACTTACCCCCATT+AGG | - | chr5.4:71056120-71056139 | None:intergenic | 40.0% | |
| TATTTGCAGGAAGCTCACAA+AGG | + | chr5.4:71057922-71057941 | MS.gene038210:intron | 40.0% | |
| TGATTGTGCTGTCAACATTG+AGG | + | chr5.4:71056050-71056069 | MS.gene038210:CDS | 40.0% | |
| TGGATAGCTAAACAGACACT+AGG | + | chr5.4:71056822-71056841 | MS.gene038210:intron | 40.0% | |
| TGTGAAGTCGTTGAACACTA+CGG | + | chr5.4:71057950-71057969 | MS.gene038210:CDS | 40.0% | |
| TGTGGAGATTCTTTACCTAC+TGG | + | chr5.4:71057664-71057683 | MS.gene038210:intron | 40.0% | |
| ! | AGCAGGTCTTGTATACTGTA+TGG | + | chr5.4:71056896-71056915 | MS.gene038210:intron | 40.0% |
| ! | CAAAGAGAGTGTAGGGAATT+TGG | + | chr5.4:71058088-71058107 | MS.gene038210:CDS | 40.0% |
| ! | CTGATTTCATCCTTTGGGTT+AGG | + | chr5.4:71057851-71057870 | MS.gene038210:intron | 40.0% |
| ! | CTTATCCCACTAAGTTGGAT+CGG | - | chr5.4:71056248-71056267 | None:intergenic | 40.0% |
| ! | TACAGGACAAAGAGAGTGTA+GGG | + | chr5.4:71058081-71058100 | MS.gene038210:intron | 40.0% |
| ! | TTACAGGACAAAGAGAGTGT+AGG | + | chr5.4:71058080-71058099 | MS.gene038210:intron | 40.0% |
| !! | GGTATATAGCATCGACACTT+CGG | + | chr5.4:71056317-71056336 | MS.gene038210:intron | 40.0% |
| AAACCGTGTACCTAACCCAA+AGG | - | chr5.4:71057864-71057883 | None:intergenic | 45.0% | |
| ATGTAGCCGATCCAACTTAG+TGG | + | chr5.4:71056239-71056258 | MS.gene038210:intron | 45.0% | |
| ATTGAGAGCTACGGAAAGCT+AGG | + | chr5.4:71057436-71057455 | MS.gene038210:CDS | 45.0% | |
| CAACTTAGTGGGATAAGGTC+TGG | + | chr5.4:71056251-71056270 | MS.gene038210:intron | 45.0% | |
| CAAGTAGTAATTGGTCCTCC+TGG | + | chr5.4:71055821-71055840 | MS.gene038210:CDS | 45.0% | |
| CAGACCTTATCCCACTAAGT+TGG | - | chr5.4:71056253-71056272 | None:intergenic | 45.0% | |
| CATTCTCTTGGTCCTAATGG+GGG | + | chr5.4:71056105-71056124 | MS.gene038210:CDS | 45.0% | |
| CCAATAGTACTATTGGGTGG+TGG | + | chr5.4:71056293-71056312 | MS.gene038210:intron | 45.0% | |
| CCACCACCCAATAGTACTAT+TGG | - | chr5.4:71056296-71056315 | None:intergenic | 45.0% | |
| CGATCCAACTTAGTGGGATA+AGG | + | chr5.4:71056246-71056265 | MS.gene038210:intron | 45.0% | |
| CTCATCTTTGTAGTGACCCT+GGG | + | chr5.4:71057326-71057345 | MS.gene038210:CDS | 45.0% | |
| CTGGCGTACCTGAATATCTA+AGG | - | chr5.4:71057993-71058012 | None:intergenic | 45.0% | |
| GATCAAATGGCGCCATAATG+TGG | - | chr5.4:71056218-71056237 | None:intergenic | 45.0% | |
| GATCGGCTACATGGATCAAA+TGG | - | chr5.4:71056231-71056250 | None:intergenic | 45.0% | |
| TGTAGCCGATCCAACTTAGT+GGG | + | chr5.4:71056240-71056259 | MS.gene038210:intron | 45.0% | |
| ! | AATGCACTGATGTACTTCCC+AGG | - | chr5.4:71057346-71057365 | None:intergenic | 45.0% |
| ! | ACTAAGTTGGATCGGCTACA+TGG | - | chr5.4:71056240-71056259 | None:intergenic | 45.0% |
| ! | ACTTCGGATTGAAAGCGTGT+TGG | + | chr5.4:71056333-71056352 | MS.gene038210:intron | 45.0% |
| ! | ATAGTACTATTGGGTGGTGG+TGG | + | chr5.4:71056296-71056315 | MS.gene038210:intron | 45.0% |
| ! | ATGCACTGATGTACTTCCCA+GGG | - | chr5.4:71057345-71057364 | None:intergenic | 45.0% |
| ! | CATCCTTTGGGTTAGGTACA+CGG | + | chr5.4:71057858-71057877 | MS.gene038210:intron | 45.0% |
| ! | CTTCGGATTGAAAGCGTGTT+GGG | + | chr5.4:71056334-71056353 | MS.gene038210:intron | 45.0% |
| ! | GTAGTTTTTCCAGAACCAGG+AGG | - | chr5.4:71055839-71055858 | None:intergenic | 45.0% |
| ! | TTCAGGTGTGATTTGTGGTG+TGG | + | chr5.4:71057646-71057665 | MS.gene038210:intron | 45.0% |
| ATCCGCACTCTGCTAAGTTC+AGG | + | chr5.4:71057629-71057648 | MS.gene038210:CDS | 50.0% | |
| ATGTGTCAGACTGTCAGTGC+CGG | - | chr5.4:71056363-71056382 | None:intergenic | 50.0% | |
| CACCTGAACTTAGCAGAGTG+CGG | - | chr5.4:71057634-71057653 | None:intergenic | 50.0% | |
| CACTCAGAAGAATGGCCAGT+AGG | - | chr5.4:71057682-71057701 | None:intergenic | 50.0% | |
| GCAGTTAGCGGCAGTTCATT+TGG | + | chr5.4:71057297-71057316 | MS.gene038210:intron | 50.0% | |
| GCTCATCTTTGTAGTGACCC+TGG | + | chr5.4:71057325-71057344 | MS.gene038210:CDS | 50.0% | |
| GTAATTGGTCCTCCTGGTTC+TGG | + | chr5.4:71055827-71055846 | MS.gene038210:CDS | 50.0% | |
| TGCTATGGGAGCTCCTGATT+GGG | + | chr5.4:71058184-71058203 | MS.gene038210:CDS | 50.0% | |
| TTGCTATGGGAGCTCCTGAT+TGG | + | chr5.4:71058183-71058202 | MS.gene038210:CDS | 50.0% | |
| ! | CTTCGATTTTCCTGGCCAAG+TGG | + | chr5.4:71057129-71057148 | MS.gene038210:CDS | 50.0% |
| ! | TTGAAAGCGTGTTGGGCATC+CGG | + | chr5.4:71056341-71056360 | MS.gene038210:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71055809 | 71058256 | 71055809 | ID=MS.gene038210 |
| chr5.4 | mRNA | 71055809 | 71058256 | 71055809 | ID=MS.gene038210.t1;Parent=MS.gene038210 |
| chr5.4 | exon | 71055809 | 71055945 | 71055809 | ID=MS.gene038210.t1.exon1;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71055809 | 71055945 | 71055809 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71056047 | 71056126 | 71056047 | ID=MS.gene038210.t1.exon2;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71056047 | 71056126 | 71056047 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71056901 | 71056975 | 71056901 | ID=MS.gene038210.t1.exon3;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71056901 | 71056975 | 71056901 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71057116 | 71057219 | 71057116 | ID=MS.gene038210.t1.exon4;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71057116 | 71057219 | 71057116 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71057301 | 71057457 | 71057301 | ID=MS.gene038210.t1.exon5;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71057301 | 71057457 | 71057301 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71057563 | 71057650 | 71057563 | ID=MS.gene038210.t1.exon6;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71057563 | 71057650 | 71057563 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71057931 | 71058003 | 71057931 | ID=MS.gene038210.t1.exon7;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71057931 | 71058003 | 71057931 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| chr5.4 | exon | 71058086 | 71058256 | 71058086 | ID=MS.gene038210.t1.exon8;Parent=MS.gene038210.t1 |
| chr5.4 | CDS | 71058086 | 71058256 | 71058086 | ID=cds.MS.gene038210.t1;Parent=MS.gene038210.t1 |
| Gene Sequence |
| Protein sequence |
