Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061152.t1 | XP_003592221.1 | 99.4 | 308 | 2 | 0 | 1 | 308 | 1 | 308 | 5.00E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061152.t1 | Q8W586 | 72.1 | 290 | 80 | 1 | 19 | 308 | 4 | 292 | 1.4e-111 | 404.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061152.t1 | G7IEN9 | 99.4 | 308 | 2 | 0 | 1 | 308 | 1 | 308 | 3.6e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47704 | MS.gene061152 | PPI |
| MS.gene061152 | MS.gene25308 | PPI |
| MS.gene061152 | MS.gene25309 | PPI |
| MS.gene061152 | MS.gene038121 | PPI |
| MS.gene061152 | MS.gene34847 | PPI |
| MS.gene061152 | MS.gene99977 | PPI |
| MS.gene061152 | MS.gene63088 | PPI |
| MS.gene038210 | MS.gene061152 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061152.t1 | MTR_1g100240 | 99.351 | 308 | 2 | 0 | 1 | 308 | 1 | 308 | 0.0 | 636 |
| MS.gene061152.t1 | MTR_5g089950 | 30.688 | 189 | 122 | 4 | 61 | 244 | 6 | 190 | 2.64e-20 | 89.4 |
| MS.gene061152.t1 | MTR_8g062340 | 30.108 | 186 | 127 | 2 | 61 | 244 | 6 | 190 | 4.58e-20 | 88.6 |
| MS.gene061152.t1 | MTR_3g080040 | 29.255 | 188 | 128 | 3 | 61 | 245 | 6 | 191 | 6.41e-20 | 87.8 |
| MS.gene061152.t1 | MTR_8g062340 | 30.108 | 186 | 127 | 2 | 61 | 244 | 6 | 190 | 1.56e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061152.t1 | AT4G21800 | 76.552 | 290 | 67 | 1 | 19 | 308 | 4 | 292 | 2.11e-167 | 470 |
| MS.gene061152.t1 | AT4G21800 | 76.552 | 290 | 67 | 1 | 19 | 308 | 4 | 292 | 2.11e-167 | 470 |
| MS.gene061152.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 2.87e-20 | 89.0 |
| MS.gene061152.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 2.87e-20 | 89.0 |
| MS.gene061152.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 2.87e-20 | 89.0 |
| MS.gene061152.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 2.87e-20 | 89.0 |
| MS.gene061152.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 2.87e-20 | 89.0 |
| MS.gene061152.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 2.87e-20 | 89.0 |
| MS.gene061152.t1 | AT5G22370 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 4.24e-16 | 77.8 |
| MS.gene061152.t1 | AT5G22370 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 4.24e-16 | 77.8 |
| MS.gene061152.t1 | AT5G22370 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 4.24e-16 | 77.8 |
Find 65 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGAAGGTTCCTCTTC+TGG | 0.208586 | 1.4:-77823230 | MS.gene061152:CDS |
| GCTGGAGTTTCTGCAGTTAC+TGG | 0.283127 | 1.4:-77821082 | MS.gene061152:CDS |
| TACTCATCTGTCAAACATTA+GGG | 0.298804 | 1.4:-77822926 | MS.gene061152:CDS |
| ATACTCATCTGTCAAACATT+AGG | 0.301640 | 1.4:-77822927 | MS.gene061152:CDS |
| CAAGAGCAGTTAATACTTGT+AGG | 0.321020 | 1.4:+77821000 | None:intergenic |
| CCTGTTATCATCATTGTTGT+TGG | 0.328714 | 1.4:-77823185 | MS.gene061152:CDS |
| CCAACAACAATGATGATAAC+AGG | 0.357092 | 1.4:+77823185 | None:intergenic |
| ATATTCACATGGTCTGCTTC+TGG | 0.363085 | 1.4:-77822251 | MS.gene061152:CDS |
| GAGTGAGTCTATGAAGAAAT+TGG | 0.370198 | 1.4:-77823252 | MS.gene061152:CDS |
| GAAGTCAAAATTCCACCATT+GGG | 0.397466 | 1.4:+77822793 | None:intergenic |
| TACAGTAATTTAAGATCAGC+TGG | 0.416370 | 1.4:-77821100 | MS.gene061152:CDS |
| ATCATTGTTGTTGGAATGGC+AGG | 0.426570 | 1.4:-77823176 | MS.gene061152:intron |
| GTTTCTGCAGTTACTGGTGC+TGG | 0.428710 | 1.4:-77821076 | MS.gene061152:CDS |
| TTCCATGTATTCCTCTGCAC+TGG | 0.431616 | 1.4:+77821024 | None:intergenic |
| CTTATTTGTGTTTAGGGAGT+GGG | 0.435119 | 1.4:-77822981 | MS.gene061152:intron |
| TTTAACTCAGAGCCTTTCTC+TGG | 0.457020 | 1.4:-77821137 | MS.gene061152:CDS |
| AAACTTAACCTCATCGAACT+TGG | 0.460043 | 1.4:+77822753 | None:intergenic |
| ATGAAGAAATTGGACATTGA+AGG | 0.465533 | 1.4:-77823242 | MS.gene061152:CDS |
| ACAACATGAGTTTGCCTTGG+AGG | 0.468476 | 1.4:-77822054 | MS.gene061152:intron |
| AAATTCCACCATTGGGGCCA+AGG | 0.471975 | 1.4:+77822800 | None:intergenic |
| GATCTGAACTTGCAGCTGCT+TGG | 0.481512 | 1.4:+77821176 | None:intergenic |
| GTCACCGGCTTCCATTTCCA+TGG | 0.485145 | 1.4:+77823524 | None:intergenic |
| TCACCGGCTTCCATTTCCAT+GGG | 0.489818 | 1.4:+77823525 | None:intergenic |
| ATATCAATGTTAGAAGCATA+TGG | 0.489870 | 1.4:+77822865 | None:intergenic |
| CAATTCAACCTTGGCCCCAA+TGG | 0.493147 | 1.4:-77822808 | MS.gene061152:CDS |
| AGAAGTCAAAATTCCACCAT+TGG | 0.493187 | 1.4:+77822792 | None:intergenic |
| TCAGAGCCTTTCTCTGGCAC+TGG | 0.495072 | 1.4:-77821131 | MS.gene061152:CDS |
| AGCACAACATGAGTTTGCCT+TGG | 0.507905 | 1.4:-77822057 | MS.gene061152:CDS |
| AAGCATGTTGCTCATAAAAG+TGG | 0.519169 | 1.4:+77822145 | None:intergenic |
| TATGGAAGTGTCATGACAGC+CGG | 0.522098 | 1.4:+77822883 | None:intergenic |
| ATTCATCCAGTGCCAGAGAA+AGG | 0.526358 | 1.4:+77821125 | None:intergenic |
| TATGTTCTCGTGGATACTCC+TGG | 0.533697 | 1.4:-77822284 | MS.gene061152:CDS |
| TTCAACCTTGGCCCCAATGG+TGG | 0.539374 | 1.4:-77822805 | MS.gene061152:CDS |
| AGCCAGTGCAGAGGAATACA+TGG | 0.540021 | 1.4:-77821026 | MS.gene061152:CDS |
| GAAGTTAGGTGAACCAGAAG+AGG | 0.546699 | 1.4:+77823217 | None:intergenic |
| CACCCTCCGCAACATGGACG+CGG | 0.548806 | 1.4:-77823583 | None:intergenic |
| TATCATCATTGTTGTTGGAA+TGG | 0.555919 | 1.4:-77823180 | MS.gene061152:CDS |
| AACAACACTCATGCATAGGT+TGG | 0.559646 | 1.4:-77822956 | MS.gene061152:CDS |
| AGAGAGTACTTGAGAGTCAC+CGG | 0.565078 | 1.4:+77823509 | None:intergenic |
| GTTACTGGTGCTGGAATCGA+AGG | 0.568425 | 1.4:-77821067 | MS.gene061152:CDS |
| ATGGAAGTGTCATGACAGCC+GGG | 0.578869 | 1.4:+77822884 | None:intergenic |
| GGCAACTACAGTGGGAAATG+TGG | 0.579709 | 1.4:+77822202 | None:intergenic |
| ATTTCTTCATAGACTCACTC+AGG | 0.587164 | 1.4:+77823255 | None:intergenic |
| GTGAATATCTCAATCTGACC+AGG | 0.587935 | 1.4:+77822266 | None:intergenic |
| GTCATGAAGCAATTCAACCT+TGG | 0.600059 | 1.4:-77822817 | MS.gene061152:CDS |
| TCAACTTGACTATGTTCTCG+TGG | 0.600433 | 1.4:-77822294 | MS.gene061152:CDS |
| ACTACATAGGCAACTACAGT+GGG | 0.605400 | 1.4:+77822194 | None:intergenic |
| ACGAGGTGTATCAACTACAT+AGG | 0.606135 | 1.4:+77822181 | None:intergenic |
| TTATGTGATGAATCTCGACC+CGG | 0.607451 | 1.4:-77822902 | MS.gene061152:CDS |
| GAGGTAACCTTGTCTTATAG+AGG | 0.608238 | 1.4:+77822108 | None:intergenic |
| CAAAATCAACAATACCTCCA+AGG | 0.609268 | 1.4:+77822040 | None:intergenic |
| TTGTTGAATGCTAAGATGAG+AGG | 0.620285 | 1.4:+77822089 | None:intergenic |
| AACTACAGTGGGAAATGTGG+AGG | 0.621918 | 1.4:+77822205 | None:intergenic |
| ATGTTGCTCATAAAAGTGGT+AGG | 0.622477 | 1.4:+77822149 | None:intergenic |
| AGCTGTTGAAGCCAGTGCAG+AGG | 0.624332 | 1.4:-77821035 | MS.gene061152:CDS |
| CACCGGCTTCCATTTCCATG+GGG | 0.630823 | 1.4:+77823526 | None:intergenic |
| GGAAAACAACACTCATGCAT+AGG | 0.633710 | 1.4:-77822960 | MS.gene061152:CDS |
| ACCGGCTTCCATTTCCATGG+GGG | 0.657686 | 1.4:+77823527 | None:intergenic |
| GTTTGCAACCAAGTTCGATG+AGG | 0.658878 | 1.4:-77822761 | MS.gene061152:intron |
| AAGTCAAAATTCCACCATTG+GGG | 0.670613 | 1.4:+77822794 | None:intergenic |
| AACTACATAGGCAACTACAG+TGG | 0.686317 | 1.4:+77822193 | None:intergenic |
| GTAGTATCCTCTATAAGACA+AGG | 0.691493 | 1.4:-77822115 | MS.gene061152:CDS |
| ACTCATCTGTCAAACATTAG+GGG | 0.701476 | 1.4:-77822925 | MS.gene061152:CDS |
| TCTCATCTTAGCATTCAACA+AGG | 0.708282 | 1.4:-77822087 | MS.gene061152:CDS |
| GTCAGATTGAGATATTCACA+TGG | 0.740453 | 1.4:-77822262 | MS.gene061152:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAACAAAATTTAATT+AGG | - | chr1.4:77821126-77821145 | MS.gene061152:CDS | 10.0% |
| !! | ACATATAAATACTTATTAAA+AGG | - | chr1.4:77822974-77822993 | MS.gene061152:intron | 10.0% |
| !! | ATAATATATATATATATTGC+TGG | - | chr1.4:77821878-77821897 | MS.gene061152:intron | 10.0% |
| !!! | TGTTTAAGTTATTATTTTAT+AGG | - | chr1.4:77823138-77823157 | MS.gene061152:intron | 10.0% |
| !! | AATAATAACTTAAACATGAA+AGG | + | chr1.4:77823134-77823153 | None:intergenic | 15.0% |
| !! | AATATAACTTATTTGTGTTT+AGG | - | chr1.4:77821591-77821610 | MS.gene061152:intron | 15.0% |
| !! | ATAAATAAATCATGACATTT+GGG | - | chr1.4:77822779-77822798 | MS.gene061152:CDS | 15.0% |
| !! | ATAATAACTTAAACATGAAA+GGG | + | chr1.4:77823133-77823152 | None:intergenic | 15.0% |
| !! | ATATAACTTATTTGTGTTTA+GGG | - | chr1.4:77821592-77821611 | MS.gene061152:intron | 15.0% |
| !! | CTTTCTATATATTATTGTAT+AGG | - | chr1.4:77821551-77821570 | MS.gene061152:intron | 15.0% |
| !!! | ATACAAAAAAAAACGTTTTT+AGG | + | chr1.4:77821220-77821239 | None:intergenic | 15.0% |
| !!! | ATTTTAACATTTCATTCAAT+TGG | - | chr1.4:77823012-77823031 | MS.gene061152:intron | 15.0% |
| !!! | TACAAAAAAAAACGTTTTTA+GGG | + | chr1.4:77821219-77821238 | None:intergenic | 15.0% |
| !! | AATACTTCATATTGCATATT+TGG | - | chr1.4:77821431-77821450 | MS.gene061152:intron | 20.0% |
| !! | GATAAATAAATCATGACATT+TGG | - | chr1.4:77822778-77822797 | MS.gene061152:CDS | 20.0% |
| !! | GTTCAAATTAAGTACTTAAA+AGG | + | chr1.4:77822748-77822767 | None:intergenic | 20.0% |
| !! | TATATCAATAGCTTAATTAG+AGG | + | chr1.4:77822065-77822084 | None:intergenic | 20.0% |
| !! | TTACTTATATATGCATTTGA+TGG | - | chr1.4:77821931-77821950 | MS.gene061152:intron | 20.0% |
| !!! | AACTTTTAAGTTTAACAGAT+TGG | - | chr1.4:77823067-77823086 | MS.gene061152:intron | 20.0% |
| !!! | ACTTTTAAGTTTAACAGATT+GGG | - | chr1.4:77823068-77823087 | MS.gene061152:intron | 20.0% |
| !!! | TAATTTGAAATTGTGAATCA+TGG | - | chr1.4:77821259-77821278 | MS.gene061152:intron | 20.0% |
| !!! | TATATATATATTGCTGGTTA+TGG | - | chr1.4:77821884-77821903 | MS.gene061152:intron | 20.0% |
| !!! | TATCATTTTTATAGCTTTCA+AGG | + | chr1.4:77822615-77822634 | None:intergenic | 20.0% |
| !!! | TCTAATTGATAGTTTTATCT+CGG | - | chr1.4:77822694-77822713 | MS.gene061152:intron | 20.0% |
| ! | AAGTCTAACTCTTAATTCAT+AGG | + | chr1.4:77822891-77822910 | None:intergenic | 25.0% |
| ! | ATTATACTGTACATGAGTTT+AGG | + | chr1.4:77821863-77821882 | None:intergenic | 25.0% |
| ! | GGAAAAAAACAAACAAAAAG+AGG | - | chr1.4:77821300-77821319 | MS.gene061152:intron | 25.0% |
| ! | GGAACAAAAGTAAAACATAT+CGG | + | chr1.4:77822182-77822201 | None:intergenic | 25.0% |
| ! | TAAACAATATTGAGCATGTT+TGG | + | chr1.4:77821525-77821544 | None:intergenic | 25.0% |
| !! | ATATCAATGTTAGAAGCATA+TGG | + | chr1.4:77821717-77821736 | None:intergenic | 25.0% |
| !! | TTGATTAATCTTTTAGTGTC+AGG | + | chr1.4:77822827-77822846 | None:intergenic | 25.0% |
| !!! | AACTTGTTTTGTTTATCTAG+TGG | - | chr1.4:77823360-77823379 | MS.gene061152:intron | 25.0% |
| !!! | CTTTTAAGTTTAACAGATTG+GGG | - | chr1.4:77823069-77823088 | MS.gene061152:intron | 25.0% |
| !!! | GCATTTAAAGTTTTGTAGAT+GGG | + | chr1.4:77822203-77822222 | None:intergenic | 25.0% |
| !!! | TGCATTTAAAGTTTTGTAGA+TGG | + | chr1.4:77822204-77822223 | None:intergenic | 25.0% |
| !!! | TGGAATGGTTTTTATTTTGA+AGG | - | chr1.4:77821279-77821298 | MS.gene061152:intron | 25.0% |
| AACAAAACAAGTTCGACAAA+AGG | + | chr1.4:77823353-77823372 | None:intergenic | 30.0% | |
| ACAGAAATTACCTGAAATTG+AGG | + | chr1.4:77822247-77822266 | None:intergenic | 30.0% | |
| ATACTCATCTGTCAAACATT+AGG | - | chr1.4:77821652-77821671 | MS.gene061152:intron | 30.0% | |
| ATGAAGAAATTGGACATTGA+AGG | - | chr1.4:77821337-77821356 | MS.gene061152:intron | 30.0% | |
| CTAGTATCAGTGATATTAAG+AGG | + | chr1.4:77821966-77821985 | None:intergenic | 30.0% | |
| GATTCAGCTCAAATATACAA+AGG | + | chr1.4:77823207-77823226 | None:intergenic | 30.0% | |
| TACTCATCTGTCAAACATTA+GGG | - | chr1.4:77821653-77821672 | MS.gene061152:intron | 30.0% | |
| TCAATAGCTTAATTAGAGGA+CGG | + | chr1.4:77822061-77822080 | None:intergenic | 30.0% | |
| TGAAATTGTGAATCATGGAA+TGG | - | chr1.4:77821264-77821283 | MS.gene061152:intron | 30.0% | |
| TGGCATAAAAAAATGAAGCA+GGG | + | chr1.4:77821998-77822017 | None:intergenic | 30.0% | |
| TTATATGTGCAATTAGAGAG+AGG | + | chr1.4:77822962-77822981 | None:intergenic | 30.0% | |
| ! | TACAGTAATTTAAGATCAGC+TGG | - | chr1.4:77823479-77823498 | MS.gene061152:intron | 30.0% |
| ! | TATCATCATTGTTGTTGGAA+TGG | - | chr1.4:77821399-77821418 | MS.gene061152:intron | 30.0% |
| !! | TATAGGTAGTTTTGCTGATT+TGG | - | chr1.4:77821568-77821587 | MS.gene061152:intron | 30.0% |
| !!! | ACAGGTTTTCTTTTGAAGTT+AGG | + | chr1.4:77821379-77821398 | None:intergenic | 30.0% |
| AAACAAGTTCGACAAAAGGA+AGG | + | chr1.4:77823349-77823368 | None:intergenic | 35.0% | |
| AAACTTAACCTCATCGAACT+TGG | + | chr1.4:77821829-77821848 | None:intergenic | 35.0% | |
| AAGCATGTTGCTCATAAAAG+TGG | + | chr1.4:77822437-77822456 | None:intergenic | 35.0% | |
| AAGTCAAAATTCCACCATTG+GGG | + | chr1.4:77821788-77821807 | None:intergenic | 35.0% | |
| ACTCATCTGTCAAACATTAG+GGG | - | chr1.4:77821654-77821673 | MS.gene061152:intron | 35.0% | |
| ACTTATTTGTGTTTAGGGAG+TGG | - | chr1.4:77821597-77821616 | MS.gene061152:intron | 35.0% | |
| AGAAGTCAAAATTCCACCAT+TGG | + | chr1.4:77821790-77821809 | None:intergenic | 35.0% | |
| ATGTTGCTCATAAAAGTGGT+AGG | + | chr1.4:77822433-77822452 | None:intergenic | 35.0% | |
| ATTGAGCATGTTTGGTATAG+CGG | + | chr1.4:77821517-77821536 | None:intergenic | 35.0% | |
| ATTTCTTCATAGACTCACTC+AGG | + | chr1.4:77821327-77821346 | None:intergenic | 35.0% | |
| CAAAATCAACAATACCTCCA+AGG | + | chr1.4:77822542-77822561 | None:intergenic | 35.0% | |
| CATAAGATCAAACAAGCTCA+AGG | + | chr1.4:77822030-77822049 | None:intergenic | 35.0% | |
| CATGAAAACAAATGCACTGT+TGG | + | chr1.4:77822159-77822178 | None:intergenic | 35.0% | |
| CCAACAACAATGATGATAAC+AGG | + | chr1.4:77821397-77821416 | None:intergenic | 35.0% | |
| CCTGTTATCATCATTGTTGT+TGG | - | chr1.4:77821394-77821413 | MS.gene061152:intron | 35.0% | |
| CTCAAGCTTCAACAAAATCA+CGG | - | chr1.4:77821488-77821507 | MS.gene061152:intron | 35.0% | |
| CTGGCATAAAAAAATGAAGC+AGG | + | chr1.4:77821999-77822018 | None:intergenic | 35.0% | |
| CTTATTTGTGTTTAGGGAGT+GGG | - | chr1.4:77821598-77821617 | MS.gene061152:intron | 35.0% | |
| GAAAACAGCTATCAAGTTCA+TGG | - | chr1.4:77822854-77822873 | MS.gene061152:CDS | 35.0% | |
| GAAGTCAAAATTCCACCATT+GGG | + | chr1.4:77821789-77821808 | None:intergenic | 35.0% | |
| GAGTGAGTCTATGAAGAAAT+TGG | - | chr1.4:77821327-77821346 | MS.gene061152:intron | 35.0% | |
| GCTCAAATATACAAAGGAAG+AGG | + | chr1.4:77823201-77823220 | None:intergenic | 35.0% | |
| GGCAAGAAAATATGCTTAAG+TGG | + | chr1.4:77822941-77822960 | None:intergenic | 35.0% | |
| GTAAAGTGAAAGCGAATAAG+CGG | + | chr1.4:77821105-77821124 | None:intergenic | 35.0% | |
| GTAGTATCCTCTATAAGACA+AGG | - | chr1.4:77822464-77822483 | MS.gene061152:intron | 35.0% | |
| GTCAGATTGAGATATTCACA+TGG | - | chr1.4:77822317-77822336 | MS.gene061152:CDS | 35.0% | |
| TCTCATCTTAGCATTCAACA+AGG | - | chr1.4:77822492-77822511 | MS.gene061152:intron | 35.0% | |
| TCTGTTCAACAGAATTGACT+GGG | + | chr1.4:77823282-77823301 | None:intergenic | 35.0% | |
| TGTTTATGCTCCTCAATTTC+AGG | - | chr1.4:77822234-77822253 | MS.gene061152:CDS | 35.0% | |
| TTAACAGATTGGGGTGAAAT+GGG | - | chr1.4:77823078-77823097 | MS.gene061152:intron | 35.0% | |
| TTCTGTTCAACAGAATTGAC+TGG | + | chr1.4:77823283-77823302 | None:intergenic | 35.0% | |
| TTGTTGAATGCTAAGATGAG+AGG | + | chr1.4:77822493-77822512 | None:intergenic | 35.0% | |
| TTTAACAGATTGGGGTGAAA+TGG | - | chr1.4:77823077-77823096 | MS.gene061152:intron | 35.0% | |
| ! | AACCATTTTCCTGTAGTTTC+AGG | - | chr1.4:77823166-77823185 | MS.gene061152:intron | 35.0% |
| ! | ACCATTTTCCTGTAGTTTCA+GGG | - | chr1.4:77823167-77823186 | MS.gene061152:intron | 35.0% |
| ! | TTAAAAGGTCTTATGCTTCG+TGG | - | chr1.4:77822989-77823008 | MS.gene061152:intron | 35.0% |
| ! | TTCACAATGAGTCGTGATTT+TGG | - | chr1.4:77821455-77821474 | MS.gene061152:intron | 35.0% |
| ! | TTGGACTAGAACAACAAATG+AGG | + | chr1.4:77822140-77822159 | None:intergenic | 35.0% |
| !! | CTAGTGGATGAAAGATTTTG+AGG | - | chr1.4:77823376-77823395 | MS.gene061152:intron | 35.0% |
| !! | GAACTTGATAGCTGTTTTCA+AGG | + | chr1.4:77822853-77822872 | None:intergenic | 35.0% |
| !! | GTCTTTTAACTCACTACAAC+AGG | - | chr1.4:77822653-77822672 | MS.gene061152:intron | 35.0% |
| !!! | CTGCTTCATTTTTTTATGCC+AGG | - | chr1.4:77821997-77822016 | MS.gene061152:intron | 35.0% |
| AACAACACTCATGCATAGGT+TGG | - | chr1.4:77821623-77821642 | MS.gene061152:intron | 40.0% | |
| AACTACATAGGCAACTACAG+TGG | + | chr1.4:77822389-77822408 | None:intergenic | 40.0% | |
| ACCCTGAAACTACAGGAAAA+TGG | + | chr1.4:77823171-77823190 | None:intergenic | 40.0% | |
| ACGAGGTGTATCAACTACAT+AGG | + | chr1.4:77822401-77822420 | None:intergenic | 40.0% | |
| ACTACATAGGCAACTACAGT+GGG | + | chr1.4:77822388-77822407 | None:intergenic | 40.0% | |
| ATATTCACATGGTCTGCTTC+TGG | - | chr1.4:77822328-77822347 | MS.gene061152:intron | 40.0% | |
| CAACAGAATTGACTGGGTAT+TGG | + | chr1.4:77823276-77823295 | None:intergenic | 40.0% | |
| CCTGTAGTTTCAGGGTTTAT+GGG | - | chr1.4:77823175-77823194 | MS.gene061152:intron | 40.0% | |
| GAGGTAACCTTGTCTTATAG+AGG | + | chr1.4:77822474-77822493 | None:intergenic | 40.0% | |
| GGAAAACAACACTCATGCAT+AGG | - | chr1.4:77821619-77821638 | MS.gene061152:intron | 40.0% | |
| GGTGAAATGGGAAGCAATAT+TGG | - | chr1.4:77823090-77823109 | MS.gene061152:intron | 40.0% | |
| GTCATGAAGCAATTCAACCT+TGG | - | chr1.4:77821762-77821781 | MS.gene061152:intron | 40.0% | |
| GTGAATATCTCAATCTGACC+AGG | + | chr1.4:77822316-77822335 | None:intergenic | 40.0% | |
| TCAACTTGACTATGTTCTCG+TGG | - | chr1.4:77822285-77822304 | MS.gene061152:CDS | 40.0% | |
| TCCTGTAGTTTCAGGGTTTA+TGG | - | chr1.4:77823174-77823193 | MS.gene061152:intron | 40.0% | |
| TTATGTGATGAATCTCGACC+CGG | - | chr1.4:77821677-77821696 | MS.gene061152:intron | 40.0% | |
| TTTAACTCAGAGCCTTTCTC+TGG | - | chr1.4:77823442-77823461 | MS.gene061152:intron | 40.0% | |
| ! | ATCATTGTTGTTGGAATGGC+AGG | - | chr1.4:77821403-77821422 | MS.gene061152:intron | 40.0% |
| AACTACAGTGGGAAATGTGG+AGG | + | chr1.4:77822377-77822396 | None:intergenic | 45.0% | |
| ACAACATGAGTTTGCCTTGG+AGG | - | chr1.4:77822525-77822544 | MS.gene061152:intron | 45.0% | |
| AGCACAACATGAGTTTGCCT+TGG | - | chr1.4:77822522-77822541 | MS.gene061152:intron | 45.0% | |
| ATTCATCCAGTGCCAGAGAA+AGG | + | chr1.4:77823457-77823476 | None:intergenic | 45.0% | |
| CCCATAAACCCTGAAACTAC+AGG | + | chr1.4:77823178-77823197 | None:intergenic | 45.0% | |
| GAAGTTAGGTGAACCAGAAG+AGG | + | chr1.4:77821365-77821384 | None:intergenic | 45.0% | |
| GACATTGAAGGTTCCTCTTC+TGG | - | chr1.4:77821349-77821368 | MS.gene061152:intron | 45.0% | |
| GTTTGCAACCAAGTTCGATG+AGG | - | chr1.4:77821818-77821837 | MS.gene061152:intron | 45.0% | |
| TATGTTCTCGTGGATACTCC+TGG | - | chr1.4:77822295-77822314 | MS.gene061152:CDS | 45.0% | |
| TGAGGACCTAAAACGAGTCA+CGG | + | chr1.4:77822122-77822141 | None:intergenic | 45.0% | |
| TTCCATGTATTCCTCTGCAC+TGG | + | chr1.4:77823558-77823577 | None:intergenic | 45.0% | |
| !! | AGAGAGTACTTGAGAGTCAC+CGG | + | chr1.4:77821073-77821092 | None:intergenic | 45.0% |
| !! | TATGGAAGTGTCATGACAGC+CGG | + | chr1.4:77821699-77821718 | None:intergenic | 45.0% |
| AAATTCCACCATTGGGGCCA+AGG | + | chr1.4:77821782-77821801 | None:intergenic | 50.0% | |
| AAGCGAATAAGCGGCGAGTT+TGG | + | chr1.4:77821096-77821115 | None:intergenic | 50.0% | |
| AGCCAGTGCAGAGGAATACA+TGG | - | chr1.4:77823553-77823572 | MS.gene061152:CDS | 50.0% | |
| CAAGCTCAAGGAAAGCTACC+TGG | + | chr1.4:77822018-77822037 | None:intergenic | 50.0% | |
| CAATTCAACCTTGGCCCCAA+TGG | - | chr1.4:77821771-77821790 | MS.gene061152:intron | 50.0% | |
| GAGTAACGCTGTGTCTATCG+TGG | + | chr1.4:77821183-77821202 | None:intergenic | 50.0% | |
| GATCTGAACTTGCAGCTGCT+TGG | + | chr1.4:77823406-77823425 | None:intergenic | 50.0% | |
| GCTGGAGTTTCTGCAGTTAC+TGG | - | chr1.4:77823497-77823516 | MS.gene061152:intron | 50.0% | |
| GGCAACTACAGTGGGAAATG+TGG | + | chr1.4:77822380-77822399 | None:intergenic | 50.0% | |
| GTTTCTGCAGTTACTGGTGC+TGG | - | chr1.4:77823503-77823522 | MS.gene061152:intron | 50.0% | |
| TGTTGTTGGAATGGCAGGTC+AGG | - | chr1.4:77821408-77821427 | MS.gene061152:intron | 50.0% | |
| ! | CACTGTCCGTGACTCGTTTT+AGG | - | chr1.4:77822113-77822132 | MS.gene061152:CDS | 50.0% |
| ! | GTGGTAGGATTTTCTGCACG+AGG | + | chr1.4:77822418-77822437 | None:intergenic | 50.0% |
| ! | GTTACTGGTGCTGGAATCGA+AGG | - | chr1.4:77823512-77823531 | MS.gene061152:intron | 50.0% |
| !! | ATGGAAGTGTCATGACAGCC+GGG | + | chr1.4:77821698-77821717 | None:intergenic | 50.0% |
| !! | ATTTCCATGGGGGTGTCTTC+GGG | + | chr1.4:77821045-77821064 | None:intergenic | 50.0% |
| !! | CATTTCCATGGGGGTGTCTT+CGG | + | chr1.4:77821046-77821065 | None:intergenic | 50.0% |
| !! | TCACCGGCTTCCATTTCCAT+GGG | + | chr1.4:77821057-77821076 | None:intergenic | 50.0% |
| ACCCCCATGGAAATGGAAGC+CGG | - | chr1.4:77821051-77821070 | MS.gene061152:CDS | 55.0% | |
| AGCTGTTGAAGCCAGTGCAG+AGG | - | chr1.4:77823544-77823563 | MS.gene061152:CDS | 55.0% | |
| CGAAGACACCCCCATGGAAA+TGG | - | chr1.4:77821044-77821063 | MS.gene061152:CDS | 55.0% | |
| GCTGTGTCTGTGACGAGGTT+TGG | - | chr1.4:77822801-77822820 | MS.gene061152:CDS | 55.0% | |
| TCAGAGCCTTTCTCTGGCAC+TGG | - | chr1.4:77823448-77823467 | MS.gene061152:intron | 55.0% | |
| TTCAACCTTGGCCCCAATGG+TGG | - | chr1.4:77821774-77821793 | MS.gene061152:intron | 55.0% | |
| TTTGGGCTGTGTCTGTGACG+AGG | - | chr1.4:77822796-77822815 | MS.gene061152:CDS | 55.0% | |
| ! | ACCGGCTTCCATTTCCATGG+GGG | + | chr1.4:77821055-77821074 | None:intergenic | 55.0% |
| !! | CACCGGCTTCCATTTCCATG+GGG | + | chr1.4:77821056-77821075 | None:intergenic | 55.0% |
| !! | GTCACCGGCTTCCATTTCCA+TGG | + | chr1.4:77821058-77821077 | None:intergenic | 55.0% |
| !! | TTTCCATGGGGGTGTCTTCG+GGG | + | chr1.4:77821044-77821063 | None:intergenic | 55.0% |
| TAACCCCGAAGACACCCCCA+TGG | - | chr1.4:77821038-77821057 | MS.gene061152:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 77821009 | 77823592 | 77821009 | ID=MS.gene061152 |
| chr1.4 | mRNA | 77821009 | 77823592 | 77821009 | ID=MS.gene061152.t1;Parent=MS.gene061152 |
| chr1.4 | exon | 77823518 | 77823592 | 77823518 | ID=MS.gene061152.t1.exon1;Parent=MS.gene061152.t1 |
| chr1.4 | CDS | 77823518 | 77823592 | 77823518 | ID=cds.MS.gene061152.t1;Parent=MS.gene061152.t1 |
| chr1.4 | exon | 77823177 | 77823300 | 77823177 | ID=MS.gene061152.t1.exon2;Parent=MS.gene061152.t1 |
| chr1.4 | CDS | 77823177 | 77823300 | 77823177 | ID=cds.MS.gene061152.t1;Parent=MS.gene061152.t1 |
| chr1.4 | exon | 77822762 | 77822988 | 77822762 | ID=MS.gene061152.t1.exon3;Parent=MS.gene061152.t1 |
| chr1.4 | CDS | 77822762 | 77822988 | 77822762 | ID=cds.MS.gene061152.t1;Parent=MS.gene061152.t1 |
| chr1.4 | exon | 77822055 | 77822345 | 77822055 | ID=MS.gene061152.t1.exon4;Parent=MS.gene061152.t1 |
| chr1.4 | CDS | 77822055 | 77822345 | 77822055 | ID=cds.MS.gene061152.t1;Parent=MS.gene061152.t1 |
| chr1.4 | exon | 77821009 | 77821221 | 77821009 | ID=MS.gene061152.t1.exon5;Parent=MS.gene061152.t1 |
| chr1.4 | CDS | 77821009 | 77821221 | 77821009 | ID=cds.MS.gene061152.t1;Parent=MS.gene061152.t1 |
| Gene Sequence |
| Protein sequence |
