Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25822.t1 | XP_003601375.1 | 93.3 | 252 | 16 | 1 | 1 | 251 | 1 | 252 | 8.50E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25822.t1 | Q6CQA6 | 50.2 | 243 | 115 | 4 | 6 | 244 | 7 | 247 | 1.1e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25822.t1 | G7J6P4 | 93.3 | 252 | 16 | 1 | 1 | 251 | 1 | 252 | 6.2e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25822 | MS.gene47704 | PPI |
| MS.gene25822 | MS.gene63088 | PPI |
| MS.gene25822 | MS.gene038121 | PPI |
| MS.gene25822 | MS.gene038210 | PPI |
| MS.gene25822 | MS.gene25308 | PPI |
| MS.gene25822 | MS.gene34847 | PPI |
| MS.gene25822 | MS.gene25309 | PPI |
| MS.gene25822 | MS.gene99977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25822.t1 | MTR_3g080040 | 93.254 | 252 | 16 | 1 | 1 | 251 | 1 | 252 | 2.10e-173 | 478 |
| MS.gene25822.t1 | MTR_8g062340 | 40.909 | 242 | 135 | 4 | 1 | 235 | 1 | 241 | 1.04e-56 | 183 |
| MS.gene25822.t1 | MTR_8g062340 | 40.909 | 242 | 135 | 4 | 1 | 235 | 1 | 241 | 1.04e-55 | 182 |
| MS.gene25822.t1 | MTR_5g089950 | 38.843 | 242 | 140 | 4 | 1 | 235 | 1 | 241 | 1.15e-54 | 177 |
| MS.gene25822.t1 | MTR_1g100240 | 28.723 | 188 | 129 | 3 | 6 | 191 | 61 | 245 | 2.41e-18 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25822.t1 | AT4G12790 | 72.800 | 250 | 68 | 0 | 1 | 250 | 1 | 250 | 1.21e-141 | 398 |
| MS.gene25822.t1 | AT4G12790 | 72.800 | 250 | 68 | 0 | 1 | 250 | 1 | 250 | 1.21e-141 | 398 |
| MS.gene25822.t1 | AT4G12790 | 72.800 | 250 | 68 | 0 | 1 | 250 | 1 | 250 | 1.21e-141 | 398 |
| MS.gene25822.t1 | AT4G12790 | 72.800 | 250 | 68 | 0 | 1 | 250 | 1 | 250 | 1.21e-141 | 398 |
| MS.gene25822.t1 | AT4G12790 | 72.800 | 250 | 68 | 0 | 1 | 250 | 1 | 250 | 1.21e-141 | 398 |
| MS.gene25822.t1 | AT4G12790 | 72.800 | 250 | 68 | 0 | 1 | 250 | 1 | 250 | 1.21e-141 | 398 |
| MS.gene25822.t1 | AT5G22370 | 40.496 | 242 | 136 | 4 | 1 | 235 | 1 | 241 | 1.32e-51 | 170 |
| MS.gene25822.t1 | AT5G22370 | 40.496 | 242 | 136 | 4 | 1 | 235 | 1 | 241 | 1.32e-51 | 170 |
| MS.gene25822.t1 | AT5G22370 | 40.496 | 242 | 136 | 4 | 1 | 235 | 1 | 241 | 1.32e-51 | 170 |
| MS.gene25822.t1 | AT4G21800 | 28.723 | 188 | 129 | 3 | 6 | 191 | 45 | 229 | 1.22e-17 | 81.6 |
| MS.gene25822.t1 | AT4G21800 | 28.723 | 188 | 129 | 3 | 6 | 191 | 45 | 229 | 1.22e-17 | 81.6 |
Find 51 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCATCCACTTATAAATT+TGG | 0.204796 | 3.2:+70244630 | None:intergenic |
| TGAGGAGCTAGACAATTATT+TGG | 0.259168 | 3.2:-70245252 | MS.gene25822:CDS |
| TGTAAGGGAACTCATTTCTT+TGG | 0.274095 | 3.2:-70245484 | MS.gene25822:CDS |
| CACCTTGAAGACAGCCTAAA+TGG | 0.281711 | 3.2:-70245284 | MS.gene25822:CDS |
| CATTTCTTTGGATGATGTTA+TGG | 0.293968 | 3.2:-70245472 | MS.gene25822:CDS |
| GGTTATGCTCAGCTTGTTAT+TGG | 0.309358 | 3.2:-70246668 | MS.gene25822:CDS |
| CCTCATCGAGCCAACCATTT+AGG | 0.314003 | 3.2:+70245270 | None:intergenic |
| TCAAATGTTCAACAAAATTC+CGG | 0.314928 | 3.2:+70244857 | None:intergenic |
| ATTCACATGTGCCGGTATTC+CGG | 0.331130 | 3.2:-70244876 | MS.gene25822:CDS |
| GATAGTAGAAAGGTGGGTTC+TGG | 0.357438 | 3.2:+70244413 | None:intergenic |
| GGACCTTGTGACTAACAAAA+AGG | 0.360034 | 3.2:-70244548 | MS.gene25822:CDS |
| GTTATGGAGGAGCTTGGATT+AGG | 0.389986 | 3.2:-70245456 | MS.gene25822:CDS |
| TTGGAATGTTTGCAGATGTA+AGG | 0.396108 | 3.2:-70245500 | MS.gene25822:intron |
| TACTATCTGAATTGAATAAA+CGG | 0.403182 | 3.2:-70244397 | MS.gene25822:CDS |
| TTATTTGGATGACGAGTACT+TGG | 0.437172 | 3.2:-70245237 | MS.gene25822:CDS |
| CATGGCCTCCCTTTCTGCAA+TGG | 0.437651 | 3.2:-70244611 | MS.gene25822:CDS |
| AAGTTGAACCATTGCAGAAA+GGG | 0.443626 | 3.2:+70244603 | None:intergenic |
| TTCTGCTTACCCATCGCAAC+AGG | 0.444516 | 3.2:+70245593 | None:intergenic |
| TGTGTACTTGCTTGATTCAC+AGG | 0.448585 | 3.2:-70244809 | MS.gene25822:intron |
| CAGCTTGTTATTGGTCCTGC+TGG | 0.449124 | 3.2:-70246659 | MS.gene25822:CDS |
| GAGCTTGGATTAGGTCCTAA+TGG | 0.456796 | 3.2:-70245447 | MS.gene25822:CDS |
| GTTATTGGTCCTGCTGGTAG+TGG | 0.459831 | 3.2:-70246653 | MS.gene25822:CDS |
| AACCATTTAGGCTGTCTTCA+AGG | 0.462563 | 3.2:+70245282 | None:intergenic |
| GATGATGTTATGGAGGAGCT+TGG | 0.467849 | 3.2:-70245462 | MS.gene25822:CDS |
| CAGTATACAAGACCACCATT+AGG | 0.495463 | 3.2:+70245432 | None:intergenic |
| TTGAGAGGATATTGACATGA+GGG | 0.503866 | 3.2:+70244575 | None:intergenic |
| ATTCAATTCAGATAGTAGAA+AGG | 0.509545 | 3.2:+70244403 | None:intergenic |
| CAAGTTGAACCATTGCAGAA+AGG | 0.518515 | 3.2:+70244602 | None:intergenic |
| TCAACAAAATTCCGGAATAC+CGG | 0.519610 | 3.2:+70244865 | None:intergenic |
| TTTGACTATCCTGTTGCGAT+GGG | 0.528417 | 3.2:-70245602 | MS.gene25822:intron |
| AGAACTTTATTCACATGTGC+CGG | 0.529230 | 3.2:-70244884 | MS.gene25822:CDS |
| GTCGCACAGTTTCACAGTGT+TGG | 0.546804 | 3.2:+70245666 | None:intergenic |
| TTCTTTGGATGATGTTATGG+AGG | 0.549697 | 3.2:-70245469 | MS.gene25822:CDS |
| ATCTGAATTGAATAAACGGA+TGG | 0.553516 | 3.2:-70244393 | MS.gene25822:CDS |
| CAAATTTATAAGTGGATGCA+TGG | 0.560538 | 3.2:-70244629 | MS.gene25822:CDS |
| CAATTCAGATAGTAGAAAGG+TGG | 0.562463 | 3.2:+70244406 | None:intergenic |
| GATGTGACCAAATTTATAAG+TGG | 0.569104 | 3.2:-70244637 | MS.gene25822:CDS |
| TGGAATGTTTGCAGATGTAA+GGG | 0.574744 | 3.2:-70245499 | MS.gene25822:intron |
| TTGAAGACAGCCTAAATGGT+TGG | 0.580862 | 3.2:-70245280 | MS.gene25822:CDS |
| AATTCAGATAGTAGAAAGGT+GGG | 0.582917 | 3.2:+70244407 | None:intergenic |
| CAGGATCAAGATTCACGACA+TGG | 0.586348 | 3.2:+70245636 | None:intergenic |
| ATTACCTTGCCACTACCAGC+AGG | 0.588337 | 3.2:+70246644 | None:intergenic |
| TTATTCAACTTTGCATACTG+AGG | 0.590355 | 3.2:+70244368 | None:intergenic |
| GAATAAATCTTTGATTGATG+TGG | 0.602588 | 3.2:-70244351 | MS.gene25822:intron |
| TGGTGGTCTTGTATACTGCA+TGG | 0.620565 | 3.2:-70245427 | MS.gene25822:CDS |
| TTTGAGAGGATATTGACATG+AGG | 0.622762 | 3.2:+70244574 | None:intergenic |
| TGGTCCTGCTGGTAGTGGCA+AGG | 0.627920 | 3.2:-70246648 | MS.gene25822:intron |
| TTGAACCATTGCAGAAAGGG+AGG | 0.635566 | 3.2:+70244606 | None:intergenic |
| CCTAAATGGTTGGCTCGATG+AGG | 0.646157 | 3.2:-70245270 | MS.gene25822:CDS |
| CTTGGATTAGGTCCTAATGG+TGG | 0.661946 | 3.2:-70245444 | MS.gene25822:CDS |
| ACAGGTAAGTAGTTATAACA+TGG | 0.687565 | 3.2:-70243506 | MS.gene25822:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTATTAAGTTTTTT+TGG | - | chr3.2:70245060-70245079 | MS.gene25822:intron | 10.0% |
| !!! | ACTCTATTTTTTAAAAAAAA+TGG | + | chr3.2:70246020-70246039 | None:intergenic | 10.0% |
| !!! | TTTTAATTAAACAAATGAAA+AGG | + | chr3.2:70244616-70244635 | None:intergenic | 10.0% |
| !! | ACATCATTAAAAATATGAAA+AGG | + | chr3.2:70246606-70246625 | None:intergenic | 15.0% |
| !! | ATAATACATATATTAGAATC+CGG | + | chr3.2:70245554-70245573 | None:intergenic | 15.0% |
| !! | TAAAAAAGGGAAAAATATAT+CGG | + | chr3.2:70246055-70246074 | None:intergenic | 15.0% |
| !! | TTTGTTTATAAATCTATTGT+TGG | - | chr3.2:70246247-70246266 | MS.gene25822:intron | 15.0% |
| !!! | ATTTTAATAGAATTAACCTT+AGG | + | chr3.2:70245043-70245062 | None:intergenic | 15.0% |
| !!! | TGTTGTATTGTTATTATATA+AGG | - | chr3.2:70246623-70246642 | MS.gene25822:intron | 15.0% |
| !! | AAATAAGTCAATTCAAATGA+AGG | + | chr3.2:70243405-70243424 | None:intergenic | 20.0% |
| !! | AATACATTAATTGAAGGAAT+AGG | + | chr3.2:70244035-70244054 | None:intergenic | 20.0% |
| !! | CAAAATATCATGACAAAAAA+AGG | + | chr3.2:70245946-70245965 | None:intergenic | 20.0% |
| !! | GAAAACATTTAACATGTTAT+AGG | + | chr3.2:70243800-70243819 | None:intergenic | 20.0% |
| !! | TACTATCTGAATTGAATAAA+CGG | - | chr3.2:70245615-70245634 | MS.gene25822:CDS | 20.0% |
| !! | TCTATTCTTAAAATAGTCAT+AGG | + | chr3.2:70245694-70245713 | None:intergenic | 20.0% |
| !! | TGAGAAAATACATTAATTGA+AGG | + | chr3.2:70244041-70244060 | None:intergenic | 20.0% |
| !! | TGGATTACAAAAAAAATTGA+TGG | - | chr3.2:70243957-70243976 | MS.gene25822:intron | 20.0% |
| !!! | AAGTTGATTTTTATAGAGAA+TGG | - | chr3.2:70245808-70245827 | MS.gene25822:intron | 20.0% |
| !!! | ACAATTTTCAAAAGCTTTTA+TGG | - | chr3.2:70243596-70243615 | MS.gene25822:intron | 20.0% |
| !!! | ACTATCTAAACGTTTAATTT+AGG | + | chr3.2:70244273-70244292 | None:intergenic | 20.0% |
| !!! | CTATCTAAACGTTTAATTTA+GGG | + | chr3.2:70244272-70244291 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCATGATATTT+TGG | - | chr3.2:70245944-70245963 | MS.gene25822:intron | 20.0% |
| !!! | GATTTTATTTTGAAAAAGCA+AGG | - | chr3.2:70245850-70245869 | MS.gene25822:intron | 20.0% |
| !!! | GCTATTTTTATAAGCTATAT+CGG | + | chr3.2:70243640-70243659 | None:intergenic | 20.0% |
| !!! | TCAATTAATGTATTTTCTCA+TGG | - | chr3.2:70244041-70244060 | MS.gene25822:intron | 20.0% |
| !!! | TCTGTTTTTAGTGAAATTAA+TGG | - | chr3.2:70244646-70244665 | MS.gene25822:CDS | 20.0% |
| !!! | TTCATTTTGTTGGTTTTTAT+AGG | - | chr3.2:70245745-70245764 | MS.gene25822:intron | 20.0% |
| !!! | TTTTAAAATATTGCAGTTCA+TGG | - | chr3.2:70245350-70245369 | MS.gene25822:intron | 20.0% |
| ! | AACAAAATTTCAACAGCATA+TGG | + | chr3.2:70244687-70244706 | None:intergenic | 25.0% |
| ! | ACAAAAATATGCATGTTGAT+CGG | + | chr3.2:70246232-70246251 | None:intergenic | 25.0% |
| ! | AGATAACAAGACAACAATAA+TGG | + | chr3.2:70245316-70245335 | None:intergenic | 25.0% |
| ! | ATTCAATTCAGATAGTAGAA+AGG | + | chr3.2:70245612-70245631 | None:intergenic | 25.0% |
| ! | ATTTGCATATGACTTCAATT+TGG | - | chr3.2:70246374-70246393 | MS.gene25822:intron | 25.0% |
| ! | GAATAAATCTTTGATTGATG+TGG | - | chr3.2:70245661-70245680 | MS.gene25822:CDS | 25.0% |
| ! | GGAATAAATAAATAAGCTGA+TGG | + | chr3.2:70246479-70246498 | None:intergenic | 25.0% |
| ! | GTGTCTAAACATGATTATTA+AGG | + | chr3.2:70244711-70244730 | None:intergenic | 25.0% |
| ! | TCAAATGTTCAACAAAATTC+CGG | + | chr3.2:70245158-70245177 | None:intergenic | 25.0% |
| ! | TCATCATCATAAGTGTTTAT+GGG | + | chr3.2:70243732-70243751 | None:intergenic | 25.0% |
| ! | TGCTTATATATAAGACTAGA+GGG | - | chr3.2:70244166-70244185 | MS.gene25822:intron | 25.0% |
| ! | TGGAGAGTTCATAAAAAAAA+AGG | + | chr3.2:70243825-70243844 | None:intergenic | 25.0% |
| ! | TGTATTCTTCATAACTTTGA+GGG | - | chr3.2:70244093-70244112 | MS.gene25822:intron | 25.0% |
| ! | TTGCTTATATATAAGACTAG+AGG | - | chr3.2:70244165-70244184 | MS.gene25822:intron | 25.0% |
| ! | TTGTATTCTTCATAACTTTG+AGG | - | chr3.2:70244092-70244111 | MS.gene25822:intron | 25.0% |
| !! | AAAATGTTGTAATGTTTTGC+AGG | - | chr3.2:70245099-70245118 | MS.gene25822:intron | 25.0% |
| !! | AAAGTATGCATTCATTTTGT+TGG | - | chr3.2:70245735-70245754 | MS.gene25822:intron | 25.0% |
| !! | AAATGTTGTAATGTTTTGCA+GGG | - | chr3.2:70245100-70245119 | MS.gene25822:intron | 25.0% |
| !! | AACAATAATGGAAAGTCTAA+AGG | + | chr3.2:70245304-70245323 | None:intergenic | 25.0% |
| !! | ATAAATTTTGTGAGACTCTA+TGG | - | chr3.2:70243536-70243555 | MS.gene25822:intron | 25.0% |
| !! | TAAACGTTTAATTTAGGGAA+GGG | + | chr3.2:70244267-70244286 | None:intergenic | 25.0% |
| !! | TGTAACAATCTTGTTCTAAA+AGG | + | chr3.2:70245004-70245023 | None:intergenic | 25.0% |
| !! | TTATTTATTCCTTTTGCAAC+AGG | - | chr3.2:70246488-70246507 | MS.gene25822:intron | 25.0% |
| !! | TTGTTTTCTCTTAAAATACG+TGG | - | chr3.2:70246325-70246344 | MS.gene25822:intron | 25.0% |
| !! | TTTAGAACAAGATTGTTACA+GGG | - | chr3.2:70245004-70245023 | MS.gene25822:intron | 25.0% |
| !! | TTTCGACTACTTTATTTATC+CGG | - | chr3.2:70245532-70245551 | MS.gene25822:intron | 25.0% |
| !!! | ATTTTTTTTGTAATCCAGAC+AGG | + | chr3.2:70243954-70243973 | None:intergenic | 25.0% |
| !!! | TAATGGAGCTTAACTTTTTT+CGG | - | chr3.2:70244489-70244508 | MS.gene25822:intron | 25.0% |
| !!! | TTTTAGAACAAGATTGTTAC+AGG | - | chr3.2:70245003-70245022 | MS.gene25822:intron | 25.0% |
| !!! | TTTTTTTTTATGAACTCTCC+AGG | - | chr3.2:70243824-70243843 | MS.gene25822:intron | 25.0% |
| AAAAAAAGGAAAATCACCCT+TGG | + | chr3.2:70245932-70245951 | None:intergenic | 30.0% | |
| AAACAAAAGTTGCAAAACTG+CGG | + | chr3.2:70245242-70245261 | None:intergenic | 30.0% | |
| AAATCTTTGATTGATGTGGT+GGG | - | chr3.2:70245665-70245684 | MS.gene25822:CDS | 30.0% | |
| AACATGTTATAGGTCATGTT+TGG | + | chr3.2:70243790-70243809 | None:intergenic | 30.0% | |
| AATTCAGATAGTAGAAAGGT+GGG | + | chr3.2:70245608-70245627 | None:intergenic | 30.0% | |
| ACAGGTAAGTAGTTATAACA+TGG | - | chr3.2:70246506-70246525 | MS.gene25822:intron | 30.0% | |
| ACTCTCAAAATTGCAATCTT+TGG | + | chr3.2:70244871-70244890 | None:intergenic | 30.0% | |
| ACTTGTGTCAGTCATAAAAA+AGG | + | chr3.2:70246069-70246088 | None:intergenic | 30.0% | |
| ACTTTACAACATTACTGACA+AGG | + | chr3.2:70245720-70245739 | None:intergenic | 30.0% | |
| AGAAACAAACATGAATACCA+GGG | + | chr3.2:70244811-70244830 | None:intergenic | 30.0% | |
| AGGACAAATATTAGACTAAG+CGG | + | chr3.2:70244984-70245003 | None:intergenic | 30.0% | |
| ATCTGAATTGAATAAACGGA+TGG | - | chr3.2:70245619-70245638 | MS.gene25822:CDS | 30.0% | |
| CAAATTTATAAGTGGATGCA+TGG | - | chr3.2:70245383-70245402 | MS.gene25822:intron | 30.0% | |
| CATGCATCCACTTATAAATT+TGG | + | chr3.2:70245385-70245404 | None:intergenic | 30.0% | |
| CATTTCTTTGGATGATGTTA+TGG | - | chr3.2:70244540-70244559 | MS.gene25822:CDS | 30.0% | |
| CTCATCATCATAAGTGTTTA+TGG | + | chr3.2:70243733-70243752 | None:intergenic | 30.0% | |
| CTTGTGTCAGTCATAAAAAA+GGG | + | chr3.2:70246068-70246087 | None:intergenic | 30.0% | |
| CTTTACAACATTACTGACAA+GGG | + | chr3.2:70245719-70245738 | None:intergenic | 30.0% | |
| GATGTGACCAAATTTATAAG+TGG | - | chr3.2:70245375-70245394 | MS.gene25822:intron | 30.0% | |
| TAAATCTTTGATTGATGTGG+TGG | - | chr3.2:70245664-70245683 | MS.gene25822:CDS | 30.0% | |
| TCGTAGACATTAGTTAAGTT+AGG | - | chr3.2:70246434-70246453 | MS.gene25822:intron | 30.0% | |
| TGTCAATATCCTCTCAAAAA+TGG | - | chr3.2:70245443-70245462 | MS.gene25822:CDS | 30.0% | |
| TTATTCAACTTTGCATACTG+AGG | + | chr3.2:70245647-70245666 | None:intergenic | 30.0% | |
| TTTACAACATTACTGACAAG+GGG | + | chr3.2:70245718-70245737 | None:intergenic | 30.0% | |
| TTTCTCTTAAAATACGTGGA+AGG | - | chr3.2:70246329-70246348 | MS.gene25822:intron | 30.0% | |
| ! | ACACCAACTAATTTTCTCAA+AGG | - | chr3.2:70244125-70244144 | MS.gene25822:intron | 30.0% |
| ! | AGGAACTTATGGATTGAAAA+TGG | - | chr3.2:70243465-70243484 | MS.gene25822:intron | 30.0% |
| ! | ATGGATTGAAAATGGCTTAT+GGG | - | chr3.2:70243473-70243492 | MS.gene25822:CDS | 30.0% |
| ! | CACCAACTAATTTTCTCAAA+GGG | - | chr3.2:70244126-70244145 | MS.gene25822:intron | 30.0% |
| ! | CTAAACGTTTAATTTAGGGA+AGG | + | chr3.2:70244268-70244287 | None:intergenic | 30.0% |
| ! | GCGGTAATTTTATTATGCTA+CGG | + | chr3.2:70244965-70244984 | None:intergenic | 30.0% |
| ! | GCTTCTTCTTTTGTTCATTT+GGG | - | chr3.2:70244458-70244477 | MS.gene25822:intron | 30.0% |
| ! | TATGGATTGAAAATGGCTTA+TGG | - | chr3.2:70243472-70243491 | MS.gene25822:CDS | 30.0% |
| ! | TATTTTCTCATGGAACAAGT+GGG | - | chr3.2:70244051-70244070 | MS.gene25822:intron | 30.0% |
| ! | TCATTTGGGACTTTGTTTAA+TGG | - | chr3.2:70244472-70244491 | MS.gene25822:intron | 30.0% |
| ! | TTGAGAGTTGTGTTACTATA+AGG | - | chr3.2:70244883-70244902 | MS.gene25822:CDS | 30.0% |
| !!! | TAAGTTTTTTTGGTTGCAAC+TGG | - | chr3.2:70245070-70245089 | MS.gene25822:intron | 30.0% |
| !!! | TTTTTTTGCTCCTAGATTCT+TGG | - | chr3.2:70245574-70245593 | MS.gene25822:intron | 30.0% |
| AAACACATCAAGACCTTGTT+TGG | + | chr3.2:70244233-70244252 | None:intergenic | 35.0% | |
| AACTACTTACCTGTTGCAAA+AGG | + | chr3.2:70246500-70246519 | None:intergenic | 35.0% | |
| AAGTTGAACCATTGCAGAAA+GGG | + | chr3.2:70245412-70245431 | None:intergenic | 35.0% | |
| ACTAAAGATGAGAAGCTTCA+CGG | + | chr3.2:70246130-70246149 | None:intergenic | 35.0% | |
| AGAACTTTATTCACATGTGC+CGG | - | chr3.2:70245128-70245147 | MS.gene25822:intron | 35.0% | |
| ATCAGCAGTAAGGGAATAAT+CGG | + | chr3.2:70246411-70246430 | None:intergenic | 35.0% | |
| ATGTTGATGTCTAGTAAGCA+TGG | - | chr3.2:70245880-70245899 | MS.gene25822:intron | 35.0% | |
| CAATTCAGATAGTAGAAAGG+TGG | + | chr3.2:70245609-70245628 | None:intergenic | 35.0% | |
| CACCATTGACAATCAATGAA+CGG | - | chr3.2:70245770-70245789 | MS.gene25822:intron | 35.0% | |
| CTAGAGCTATGTGAAAATCA+TGG | + | chr3.2:70245993-70246012 | None:intergenic | 35.0% | |
| CTTAAAATACGTGGAAGGAT+TGG | - | chr3.2:70246334-70246353 | MS.gene25822:intron | 35.0% | |
| GAGAAACAAACATGAATACC+AGG | + | chr3.2:70244812-70244831 | None:intergenic | 35.0% | |
| GAGTGAGTCAATAGCTTAAA+GGG | + | chr3.2:70245276-70245295 | None:intergenic | 35.0% | |
| GCAGCTTAAAATACATGTGT+GGG | - | chr3.2:70246269-70246288 | MS.gene25822:intron | 35.0% | |
| GCTATGTGAAAATCATGGTT+AGG | + | chr3.2:70245988-70246007 | None:intergenic | 35.0% | |
| TCAACAAAATTCCGGAATAC+CGG | + | chr3.2:70245150-70245169 | None:intergenic | 35.0% | |
| TGAGGAGCTAGACAATTATT+TGG | - | chr3.2:70244760-70244779 | MS.gene25822:intron | 35.0% | |
| TGAGTGAGTCAATAGCTTAA+AGG | + | chr3.2:70245277-70245296 | None:intergenic | 35.0% | |
| TGGAATGTTTGCAGATGTAA+GGG | - | chr3.2:70244513-70244532 | MS.gene25822:intron | 35.0% | |
| TGGACTTGAGGAAAGAAAAA+AGG | - | chr3.2:70246544-70246563 | MS.gene25822:intron | 35.0% | |
| TGTAAGGGAACTCATTTCTT+TGG | - | chr3.2:70244528-70244547 | MS.gene25822:intron | 35.0% | |
| TTACAACATTACTGACAAGG+GGG | + | chr3.2:70245717-70245736 | None:intergenic | 35.0% | |
| TTACTGTTTGGAGGAACTTA+TGG | - | chr3.2:70243454-70243473 | MS.gene25822:intron | 35.0% | |
| TTATTTGGATGACGAGTACT+TGG | - | chr3.2:70244775-70244794 | MS.gene25822:intron | 35.0% | |
| TTCTTTGGATGATGTTATGG+AGG | - | chr3.2:70244543-70244562 | MS.gene25822:CDS | 35.0% | |
| TTGAGAGGATATTGACATGA+GGG | + | chr3.2:70245440-70245459 | None:intergenic | 35.0% | |
| TTGAGATGTTTAGCCAAACA+AGG | - | chr3.2:70244217-70244236 | MS.gene25822:intron | 35.0% | |
| TTGGAATGTTTGCAGATGTA+AGG | - | chr3.2:70244512-70244531 | MS.gene25822:intron | 35.0% | |
| TTTGAGAGGATATTGACATG+AGG | + | chr3.2:70245441-70245460 | None:intergenic | 35.0% | |
| ! | AACCGTTCATTGATTGTCAA+TGG | + | chr3.2:70245775-70245794 | None:intergenic | 35.0% |
| ! | ATTTTCCTGCCATAATTACG+TGG | - | chr3.2:70246204-70246223 | MS.gene25822:intron | 35.0% |
| ! | ATTTTCTCATGGAACAAGTG+GGG | - | chr3.2:70244052-70244071 | MS.gene25822:intron | 35.0% |
| ! | CACCCTTTGAGAAAATTAGT+TGG | + | chr3.2:70244131-70244150 | None:intergenic | 35.0% |
| ! | GATCCTTTTTGTTAGTCACA+AGG | + | chr3.2:70245470-70245489 | None:intergenic | 35.0% |
| ! | GGCTTCTTCTTTTGTTCATT+TGG | - | chr3.2:70244457-70244476 | MS.gene25822:intron | 35.0% |
| ! | GTATTTTCTCATGGAACAAG+TGG | - | chr3.2:70244050-70244069 | MS.gene25822:intron | 35.0% |
| ! | TAGTCAAAATTTTCAGCAGC+AGG | + | chr3.2:70244398-70244417 | None:intergenic | 35.0% |
| ! | TGAATGTCTTGGATGGTTTT+TGG | - | chr3.2:70246295-70246314 | MS.gene25822:intron | 35.0% |
| ! | TGACAATCAATGAACGGTTT+TGG | - | chr3.2:70245776-70245795 | MS.gene25822:intron | 35.0% |
| ! | TTTTTGTAATCCAGACAGGA+TGG | + | chr3.2:70243950-70243969 | None:intergenic | 35.0% |
| !! | GTTGTTTTCATAAGCTATCC+TGG | + | chr3.2:70243845-70243864 | None:intergenic | 35.0% |
| !!! | GATTTTCACATAGCTCTAGT+GGG | - | chr3.2:70245994-70246013 | MS.gene25822:intron | 35.0% |
| !!! | TGATTTTCACATAGCTCTAG+TGG | - | chr3.2:70245993-70246012 | MS.gene25822:intron | 35.0% |
| !!! | TGCTACGGATTCTATTTTTG+TGG | + | chr3.2:70244950-70244969 | None:intergenic | 35.0% |
| AACCATTTAGGCTGTCTTCA+AGG | + | chr3.2:70244733-70244752 | None:intergenic | 40.0% | |
| ACGGACATGATTATACAACG+AGG | + | chr3.2:70246111-70246130 | None:intergenic | 40.0% | |
| ATATGATACTCCATCCTGTC+TGG | - | chr3.2:70243937-70243956 | MS.gene25822:intron | 40.0% | |
| CAGTATACAAGACCACCATT+AGG | + | chr3.2:70244583-70244602 | None:intergenic | 40.0% | |
| CATTCCAAGCAAGATTCCAA+GGG | - | chr3.2:70245913-70245932 | MS.gene25822:intron | 40.0% | |
| GGACCTTGTGACTAACAAAA+AGG | - | chr3.2:70245464-70245483 | MS.gene25822:CDS | 40.0% | |
| GGCAGCTTAAAATACATGTG+TGG | - | chr3.2:70246268-70246287 | MS.gene25822:intron | 40.0% | |
| TACTTGCTTGATTCACAGGT+TGG | - | chr3.2:70245207-70245226 | MS.gene25822:intron | 40.0% | |
| TGATCGGTACCACGTAATTA+TGG | + | chr3.2:70246216-70246235 | None:intergenic | 40.0% | |
| TGGGTTATGAATGTCTTGGA+TGG | - | chr3.2:70246288-70246307 | MS.gene25822:intron | 40.0% | |
| TGTGTACTTGCTTGATTCAC+AGG | - | chr3.2:70245203-70245222 | MS.gene25822:intron | 40.0% | |
| TTGAAGACAGCCTAAATGGT+TGG | - | chr3.2:70244732-70244751 | MS.gene25822:intron | 40.0% | |
| TTTGACTATCCTGTTGCGAT+GGG | - | chr3.2:70244410-70244429 | MS.gene25822:CDS | 40.0% | |
| ! | CAAGTTGAACCATTGCAGAA+AGG | + | chr3.2:70245413-70245432 | None:intergenic | 40.0% |
| ! | GTTTTATACCACTGGACTTG+AGG | - | chr3.2:70246532-70246551 | MS.gene25822:intron | 40.0% |
| ! | TAACCACTCGTGTTACTGTT+TGG | - | chr3.2:70243442-70243461 | MS.gene25822:intron | 40.0% |
| ! | TGTGTGGGTTATGAATGTCT+TGG | - | chr3.2:70246284-70246303 | MS.gene25822:intron | 40.0% |
| ! | TTTTCTTTCCTCAAGTCCAG+TGG | + | chr3.2:70246543-70246562 | None:intergenic | 40.0% |
| !! | CATGGTGAGTTTTATACCAC+TGG | - | chr3.2:70246524-70246543 | MS.gene25822:intron | 40.0% |
| !! | GGTTATGCTCAGCTTGTTAT+TGG | - | chr3.2:70243344-70243363 | MS.gene25822:CDS | 40.0% |
| !! | TACTTGGTTTTTGATTGCCC+TGG | - | chr3.2:70244791-70244810 | MS.gene25822:intron | 40.0% |
| !! | TCACAAGGTCCATTTTTGAG+AGG | + | chr3.2:70245455-70245474 | None:intergenic | 40.0% |
| !! | TTTTGACTATCCTGTTGCGA+TGG | - | chr3.2:70244409-70244428 | MS.gene25822:CDS | 40.0% |
| !!! | GGAGCTTAACTTTTTTCGGT+TGG | - | chr3.2:70244493-70244512 | MS.gene25822:intron | 40.0% |
| ATACAACGAGGTCAGTGTAC+TGG | + | chr3.2:70246099-70246118 | None:intergenic | 45.0% | |
| ATCACCCTTGGAATCTTGCT+TGG | + | chr3.2:70245920-70245939 | None:intergenic | 45.0% | |
| CACCTTGAAGACAGCCTAAA+TGG | - | chr3.2:70244728-70244747 | MS.gene25822:intron | 45.0% | |
| CAGGATCAAGATTCACGACA+TGG | + | chr3.2:70244379-70244398 | None:intergenic | 45.0% | |
| GATGATGTTATGGAGGAGCT+TGG | - | chr3.2:70244550-70244569 | MS.gene25822:CDS | 45.0% | |
| GCAGAATGTGTATTGTCGTG+TGG | - | chr3.2:70244436-70244455 | MS.gene25822:intron | 45.0% | |
| GCATTCCAAGCAAGATTCCA+AGG | - | chr3.2:70245912-70245931 | MS.gene25822:intron | 45.0% | |
| GTTATGGAGGAGCTTGGATT+AGG | - | chr3.2:70244556-70244575 | MS.gene25822:CDS | 45.0% | |
| TTGAACCATTGCAGAAAGGG+AGG | + | chr3.2:70245409-70245428 | None:intergenic | 45.0% | |
| ! | ATTCACATGTGCCGGTATTC+CGG | - | chr3.2:70245136-70245155 | MS.gene25822:intron | 45.0% |
| ! | CTACGAAGCATCAGCAGTAA+GGG | + | chr3.2:70246420-70246439 | None:intergenic | 45.0% |
| ! | CTTGGATTAGGTCCTAATGG+TGG | - | chr3.2:70244568-70244587 | MS.gene25822:CDS | 45.0% |
| ! | GAGCTTGGATTAGGTCCTAA+TGG | - | chr3.2:70244565-70244584 | MS.gene25822:CDS | 45.0% |
| ! | GATAGTAGAAAGGTGGGTTC+TGG | + | chr3.2:70245602-70245621 | None:intergenic | 45.0% |
| ! | TCTACGAAGCATCAGCAGTA+AGG | + | chr3.2:70246421-70246440 | None:intergenic | 45.0% |
| !! | GGTTCTGGATCCAAGAATCT+AGG | + | chr3.2:70245587-70245606 | None:intergenic | 45.0% |
| !! | TGGTGGTCTTGTATACTGCA+TGG | - | chr3.2:70244585-70244604 | MS.gene25822:CDS | 45.0% |
| ATTACCTTGCCACTACCAGC+AGG | + | chr3.2:70243371-70243390 | None:intergenic | 50.0% | |
| CCTCATCGAGCCAACCATTT+AGG | + | chr3.2:70244745-70244764 | None:intergenic | 50.0% | |
| CCTCCAAACAGTAACACGAG+TGG | + | chr3.2:70243448-70243467 | None:intergenic | 50.0% | |
| CGGTACCACGTAATTATGGC+AGG | + | chr3.2:70246212-70246231 | None:intergenic | 50.0% | |
| GTCGCACAGTTTCACAGTGT+TGG | + | chr3.2:70244349-70244368 | None:intergenic | 50.0% | |
| GTTATTGGTCCTGCTGGTAG+TGG | - | chr3.2:70243359-70243378 | MS.gene25822:CDS | 50.0% | |
| TTCTGCTTACCCATCGCAAC+AGG | + | chr3.2:70244422-70244441 | None:intergenic | 50.0% | |
| ! | CCACTCGTGTTACTGTTTGG+AGG | - | chr3.2:70243445-70243464 | MS.gene25822:intron | 50.0% |
| !! | CAGCTTGTTATTGGTCCTGC+TGG | - | chr3.2:70243353-70243372 | MS.gene25822:CDS | 50.0% |
| !! | CCTAAATGGTTGGCTCGATG+AGG | - | chr3.2:70244742-70244761 | MS.gene25822:intron | 50.0% |
| !! | GGGCTAGTTTGTGTAGCCTA+AGG | - | chr3.2:70245024-70245043 | MS.gene25822:intron | 50.0% |
| CATGGCCTCCCTTTCTGCAA+TGG | - | chr3.2:70245401-70245420 | MS.gene25822:intron | 55.0% | |
| TGCAGTCACGTGAGTGTGCA+AGG | - | chr3.2:70244924-70244943 | MS.gene25822:intron | 55.0% | |
| !! | TGGTCCTGCTGGTAGTGGCA+AGG | - | chr3.2:70243364-70243383 | MS.gene25822:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 70243341 | 70246693 | 70243341 | ID=MS.gene25822 |
| chr3.2 | mRNA | 70243341 | 70246693 | 70243341 | ID=MS.gene25822.t1;Parent=MS.gene25822 |
| chr3.2 | exon | 70246649 | 70246693 | 70246649 | ID=MS.gene25822.t1.exon1;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70246649 | 70246693 | 70246649 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70245603 | 70245711 | 70245603 | ID=MS.gene25822.t1.exon2;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70245603 | 70245711 | 70245603 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70245426 | 70245507 | 70245426 | ID=MS.gene25822.t1.exon3;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70245426 | 70245507 | 70245426 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70245222 | 70245307 | 70245222 | ID=MS.gene25822.t1.exon4;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70245222 | 70245307 | 70245222 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70244810 | 70244913 | 70244810 | ID=MS.gene25822.t1.exon5;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70244810 | 70244913 | 70244810 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70244538 | 70244668 | 70244538 | ID=MS.gene25822.t1.exon6;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70244538 | 70244668 | 70244538 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70244352 | 70244445 | 70244352 | ID=MS.gene25822.t1.exon7;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70244352 | 70244445 | 70244352 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70243469 | 70243524 | 70243469 | ID=MS.gene25822.t1.exon8;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70243469 | 70243524 | 70243469 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| chr3.2 | exon | 70243341 | 70243389 | 70243341 | ID=MS.gene25822.t1.exon9;Parent=MS.gene25822.t1 |
| chr3.2 | CDS | 70243341 | 70243389 | 70243341 | ID=cds.MS.gene25822.t1;Parent=MS.gene25822.t1 |
| Gene Sequence |
| Protein sequence |
