AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006260.t1 MTR_1g100240 99.351 308 2 0 1 308 1 308 0.0 636
MS.gene006260.t1 MTR_5g089950 30.688 189 122 4 61 244 6 190 2.64e-20 89.4
MS.gene006260.t1 MTR_8g062340 30.108 186 127 2 61 244 6 190 4.58e-20 88.6
MS.gene006260.t1 MTR_3g080040 29.255 188 128 3 61 245 6 191 6.41e-20 87.8
MS.gene006260.t1 MTR_8g062340 30.108 186 127 2 61 244 6 190 1.56e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006260.t1 AT4G21800 76.552 290 67 1 19 308 4 292 2.11e-167 470
MS.gene006260.t1 AT4G21800 76.552 290 67 1 19 308 4 292 2.11e-167 470
MS.gene006260.t1 AT4G12790 30.857 175 118 3 61 233 6 179 2.87e-20 89.0
MS.gene006260.t1 AT4G12790 30.857 175 118 3 61 233 6 179 2.87e-20 89.0
MS.gene006260.t1 AT4G12790 30.857 175 118 3 61 233 6 179 2.87e-20 89.0
MS.gene006260.t1 AT4G12790 30.857 175 118 3 61 233 6 179 2.87e-20 89.0
MS.gene006260.t1 AT4G12790 30.857 175 118 3 61 233 6 179 2.87e-20 89.0
MS.gene006260.t1 AT4G12790 30.857 175 118 3 61 233 6 179 2.87e-20 89.0
MS.gene006260.t1 AT5G22370 27.957 186 131 3 61 244 6 190 4.24e-16 77.8
MS.gene006260.t1 AT5G22370 27.957 186 131 3 61 244 6 190 4.24e-16 77.8
MS.gene006260.t1 AT5G22370 27.957 186 131 3 61 244 6 190 4.24e-16 77.8

Find 64 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTGAAGGTTCCTCTTC+TGG 0.208586 1.1:-72018788 MS.gene006260:CDS
GCTGGAGTTTCTGCAGTTAC+TGG 0.283127 1.1:-72016662 MS.gene006260:CDS
CCTGTTATCATTATTGTTGT+TGG 0.294421 1.1:-72018743 MS.gene006260:CDS
CAAGAGCAGTTAATACTTGT+AGG 0.321020 1.1:+72016580 None:intergenic
ATATTCACATGGTCTGCTTC+TGG 0.363085 1.1:-72017832 MS.gene006260:CDS
CCAACAACAATAATGATAAC+AGG 0.369494 1.1:+72018743 None:intergenic
GAGTGAGTCTATGAAGAAAT+TGG 0.370198 1.1:-72018810 MS.gene006260:CDS
GAAGTCAAAATTCCACCATT+GGG 0.397466 1.1:+72018380 None:intergenic
TACAGTAATTTAAGATCAGC+TGG 0.416370 1.1:-72016680 MS.gene006260:CDS
ATTATTGTTGTTGGAATGGC+AGG 0.425736 1.1:-72018734 MS.gene006260:intron
GTTTCTGCAGTTACTGGTGC+TGG 0.428710 1.1:-72016656 MS.gene006260:CDS
TTCCATGTATTCCTCTGCAC+TGG 0.431616 1.1:+72016604 None:intergenic
ATACTCATCTGTCAAACATC+AGG 0.441997 1.1:-72018514 MS.gene006260:CDS
TTTAACTCAGAGCCTTTCTC+TGG 0.457020 1.1:-72016717 MS.gene006260:CDS
AAACTTAACCTCATCGAACT+TGG 0.460043 1.1:+72018340 None:intergenic
CTCATTTGTGTTAAGGGAGT+GGG 0.461516 1.1:-72018568 MS.gene006260:intron
ATGAAGAAATTGGACATTGA+AGG 0.465533 1.1:-72018800 MS.gene006260:CDS
ACAACATGAGTTTGCCTTGG+AGG 0.468476 1.1:-72017635 MS.gene006260:intron
AAATTCCACCATTGGGGCCA+AGG 0.471975 1.1:+72018387 None:intergenic
GATCTGAACTTGCAGCTGCT+TGG 0.481512 1.1:+72016756 None:intergenic
GTCACCGGCTTCCATTTCCA+TGG 0.485145 1.1:+72019090 None:intergenic
TCACCGGCTTCCATTTCCAT+GGG 0.489818 1.1:+72019091 None:intergenic
ATATCAATGTTAGAAGCATA+TGG 0.489870 1.1:+72018452 None:intergenic
CAATTCAACCTTGGCCCCAA+TGG 0.493147 1.1:-72018395 MS.gene006260:CDS
AGAAGTCAAAATTCCACCAT+TGG 0.493187 1.1:+72018379 None:intergenic
TCAGAGCCTTTCTCTGGCAC+TGG 0.495072 1.1:-72016711 MS.gene006260:CDS
AGCACAACATGAGTTTGCCT+TGG 0.507905 1.1:-72017638 MS.gene006260:CDS
AAGCATGTTGCTCATAAAAG+TGG 0.519169 1.1:+72017726 None:intergenic
TATGGAAGTGTCATGACAGC+CGG 0.522098 1.1:+72018470 None:intergenic
ATTCATCCAGTGCCAGAGAA+AGG 0.526358 1.1:+72016705 None:intergenic
TATGTTCTCGTGGATACTCC+TGG 0.533697 1.1:-72017865 MS.gene006260:CDS
TTCAACCTTGGCCCCAATGG+TGG 0.539374 1.1:-72018392 MS.gene006260:CDS
AGCCAGTGCAGAGGAATACA+TGG 0.540021 1.1:-72016606 MS.gene006260:CDS
GAAGTTAGGTGAACCAGAAG+AGG 0.546699 1.1:+72018775 None:intergenic
TATCATTATTGTTGTTGGAA+TGG 0.555919 1.1:-72018738 MS.gene006260:CDS
AGAAAGTACTTGAGAGTCAC+CGG 0.565078 1.1:+72019075 None:intergenic
GACTACACTCATGCATAGGT+TGG 0.567808 1.1:-72018543 MS.gene006260:CDS
GTTACTGGTGCTGGAATCGA+AGG 0.568425 1.1:-72016647 MS.gene006260:CDS
TACTCATCTGTCAAACATCA+GGG 0.573701 1.1:-72018513 MS.gene006260:CDS
ATGGAAGTGTCATGACAGCC+GGG 0.578869 1.1:+72018471 None:intergenic
GGCAACTACAGTGGGAAATG+TGG 0.579709 1.1:+72017783 None:intergenic
ATTTCTTCATAGACTCACTC+AGG 0.587164 1.1:+72018813 None:intergenic
GTGAATATCTCAATCTGACC+AGG 0.587935 1.1:+72017847 None:intergenic
GTCATGAAGCAATTCAACCT+TGG 0.600059 1.1:-72018404 MS.gene006260:CDS
TCAACTTGACTATGTTCTCG+TGG 0.600433 1.1:-72017875 MS.gene006260:CDS
ACTACATAGGCAACTACAGT+GGG 0.605400 1.1:+72017775 None:intergenic
ACGAGGTGTATCAACTACAT+AGG 0.606135 1.1:+72017762 None:intergenic
TTATGTGATGAATCTCGACC+CGG 0.607451 1.1:-72018489 MS.gene006260:CDS
GAGGTAACCTTGTCTTATAG+AGG 0.608238 1.1:+72017689 None:intergenic
CAAAATCAACAATACCTCCA+AGG 0.609268 1.1:+72017621 None:intergenic
TTGTTGAATGCTAAGATGAG+AGG 0.620285 1.1:+72017670 None:intergenic
AACTACAGTGGGAAATGTGG+AGG 0.621918 1.1:+72017786 None:intergenic
ATGTTGCTCATAAAAGTGGT+AGG 0.622477 1.1:+72017730 None:intergenic
AGCTGTTGAAGCCAGTGCAG+AGG 0.624332 1.1:-72016615 MS.gene006260:CDS
CACCGGCTTCCATTTCCATG+GGG 0.630823 1.1:+72019092 None:intergenic
GGAAGACTACACTCATGCAT+AGG 0.648368 1.1:-72018547 MS.gene006260:CDS
ACCGGCTTCCATTTCCATGG+GGG 0.657686 1.1:+72019093 None:intergenic
GTTTGCAACCAAGTTCGATG+AGG 0.658878 1.1:-72018348 MS.gene006260:intron
AAGTCAAAATTCCACCATTG+GGG 0.670613 1.1:+72018381 None:intergenic
AACTACATAGGCAACTACAG+TGG 0.686317 1.1:+72017774 None:intergenic
GTAGTATCCTCTATAAGACA+AGG 0.691493 1.1:-72017696 MS.gene006260:CDS
TCTCATCTTAGCATTCAACA+AGG 0.708282 1.1:-72017668 MS.gene006260:CDS
ACTCATCTGTCAAACATCAG+GGG 0.713135 1.1:-72018512 MS.gene006260:CDS
GTCAGATTGAGATATTCACA+TGG 0.740453 1.1:-72017843 MS.gene006260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAACAAAATTTAATT+AGG - chr1.1:72016706-72016725 MS.gene006260:CDS 10.0%
!! ACATATAAATACTTATTAAA+AGG - chr1.1:72018540-72018559 MS.gene006260:CDS 10.0%
!! TATATATATATATATATTGC+TGG - chr1.1:72017443-72017462 MS.gene006260:intron 10.0%
!!! AAAAAAAAAAAAACGTTTTT+AGG + chr1.1:72016800-72016819 None:intergenic 10.0%
!!! AAAAAAAAAAAACGTTTTTA+GGG + chr1.1:72016799-72016818 None:intergenic 10.0%
!!! TGTTTAAGTTATTATTTTAT+AGG - chr1.1:72018704-72018723 MS.gene006260:intron 10.0%
!! AATAATAACTTAAACATGAA+AGG + chr1.1:72018700-72018719 None:intergenic 15.0%
!! ATAAATAAATCATGACATTT+GGG - chr1.1:72018344-72018363 MS.gene006260:intron 15.0%
!! ATAATAACTTAAACATGAAA+GGG + chr1.1:72018699-72018718 None:intergenic 15.0%
!!! ATTTTAACATTTCATTCAAT+TGG - chr1.1:72018578-72018597 MS.gene006260:intron 15.0%
!! AATATAACTCATTTGTGTTA+AGG - chr1.1:72017150-72017169 MS.gene006260:intron 20.0%
!! ATATAACTCATTTGTGTTAA+GGG - chr1.1:72017151-72017170 MS.gene006260:intron 20.0%
!! GATAAATAAATCATGACATT+TGG - chr1.1:72018343-72018362 MS.gene006260:intron 20.0%
!! GTTCAAATTAAGTACTTAAA+AGG + chr1.1:72018313-72018332 None:intergenic 20.0%
!! TATATCAATAGCTTAATTAG+AGG + chr1.1:72017630-72017649 None:intergenic 20.0%
!! TTACTTATATATGCATTTGA+TGG - chr1.1:72017496-72017515 MS.gene006260:intron 20.0%
!!! AACTTTTAAGTTTAACAGAT+TGG - chr1.1:72018633-72018652 MS.gene006260:intron 20.0%
!!! AATTTGTTTTGTTTATCTAG+TGG - chr1.1:72018926-72018945 MS.gene006260:intron 20.0%
!!! ACTTTTAAGTTTAACAGATT+GGG - chr1.1:72018634-72018653 MS.gene006260:intron 20.0%
!!! TAATTTGAAATTGTGAATCA+TGG - chr1.1:72016847-72016866 MS.gene006260:intron 20.0%
!!! TATATATATATTGCTGGTTA+TGG - chr1.1:72017449-72017468 MS.gene006260:intron 20.0%
!!! TATCATTTTTATAGCTTTCA+AGG + chr1.1:72018180-72018199 None:intergenic 20.0%
!!! TCTAATTGATAGTTTTATCT+CGG - chr1.1:72018259-72018278 MS.gene006260:intron 20.0%
! AACAAAACAAATTCGACAAA+AGG + chr1.1:72018919-72018938 None:intergenic 25.0%
! AAGTCTAACTCTTAATTCAT+AGG + chr1.1:72018456-72018475 None:intergenic 25.0%
! ATTATACTGTACATGAGTTT+AGG + chr1.1:72017422-72017441 None:intergenic 25.0%
! GGAAAAAAACAAACAAAAAG+AGG - chr1.1:72016888-72016907 MS.gene006260:intron 25.0%
! GGAACAAAAGTAAAACATAT+CGG + chr1.1:72017747-72017766 None:intergenic 25.0%
!! ATATCAATGTTAGAAGCATA+TGG + chr1.1:72017276-72017295 None:intergenic 25.0%
!! TATCATTATTGTTGTTGGAA+TGG - chr1.1:72016987-72017006 MS.gene006260:intron 25.0%
!!! AAGGTGTTTGATTAATCTTT+TGG + chr1.1:72018399-72018418 None:intergenic 25.0%
!!! CTTTTAAGTTTAACAGATTG+GGG - chr1.1:72018635-72018654 MS.gene006260:intron 25.0%
!!! GCATTTAAAGTTTTGTAGAT+GGG + chr1.1:72017768-72017787 None:intergenic 25.0%
!!! TGCATTTAAAGTTTTGTAGA+TGG + chr1.1:72017769-72017788 None:intergenic 25.0%
!!! TGGAATGGTTTTTATTTTGA+AGG - chr1.1:72016867-72016886 MS.gene006260:intron 25.0%
AAACAAATTCGACAAAAGGA+AGG + chr1.1:72018915-72018934 None:intergenic 30.0%
AACTATCAATTAGATCTCAC+AGG + chr1.1:72018253-72018272 None:intergenic 30.0%
ACAGAAATTACCTGAAATTG+AGG + chr1.1:72017812-72017831 None:intergenic 30.0%
ATGAAGAAATTGGACATTGA+AGG - chr1.1:72016925-72016944 MS.gene006260:intron 30.0%
CCAACAACAATAATGATAAC+AGG + chr1.1:72016985-72017004 None:intergenic 30.0%
CCTGTTATCATTATTGTTGT+TGG - chr1.1:72016982-72017001 MS.gene006260:intron 30.0%
CTAGTATCAGTGATATTAAG+AGG + chr1.1:72017531-72017550 None:intergenic 30.0%
GAAACTATATTGTGCATGTT+TGG + chr1.1:72017098-72017117 None:intergenic 30.0%
GATTCAGCTCAAATATACAA+AGG + chr1.1:72018773-72018792 None:intergenic 30.0%
GTAAAGTGAAAGTGAATAAG+CGG + chr1.1:72016685-72016704 None:intergenic 30.0%
TCAATAGCTTAATTAGAGGA+CGG + chr1.1:72017626-72017645 None:intergenic 30.0%
TGAAATTGTGAATCATGGAA+TGG - chr1.1:72016852-72016871 MS.gene006260:intron 30.0%
TGGCATAAAAAAATGAAGCA+GGG + chr1.1:72017563-72017582 None:intergenic 30.0%
TTATATGTGCAATTAGAGAG+AGG + chr1.1:72018528-72018547 None:intergenic 30.0%
! TACAGTAATTTAAGATCAGC+TGG - chr1.1:72019045-72019064 MS.gene006260:intron 30.0%
!!! ACAGGTTTTCTTTTGAAGTT+AGG + chr1.1:72016967-72016986 None:intergenic 30.0%
!!! TTGATTAATCTTTTGGTGTC+AGG + chr1.1:72018392-72018411 None:intergenic 30.0%
AAACTTAACCTCATCGAACT+TGG + chr1.1:72017388-72017407 None:intergenic 35.0%
AAGCATGTTGCTCATAAAAG+TGG + chr1.1:72018002-72018021 None:intergenic 35.0%
AAGTCAAAATTCCACCATTG+GGG + chr1.1:72017347-72017366 None:intergenic 35.0%
AGAAGTCAAAATTCCACCAT+TGG + chr1.1:72017349-72017368 None:intergenic 35.0%
ATACTCATCTGTCAAACATC+AGG - chr1.1:72017211-72017230 MS.gene006260:intron 35.0%
ATGTTGCTCATAAAAGTGGT+AGG + chr1.1:72017998-72018017 None:intergenic 35.0%
ATTTCTTCATAGACTCACTC+AGG + chr1.1:72016915-72016934 None:intergenic 35.0%
CAAAATCAACAATACCTCCA+AGG + chr1.1:72018107-72018126 None:intergenic 35.0%
CATAAGATCAAACAAGCTCA+AGG + chr1.1:72017595-72017614 None:intergenic 35.0%
CATGAAAACAAATGCACTGT+TGG + chr1.1:72017724-72017743 None:intergenic 35.0%
CTGGCATAAAAAAATGAAGC+AGG + chr1.1:72017564-72017583 None:intergenic 35.0%
GAAAACAGCTATCAAGTTCA+TGG - chr1.1:72018419-72018438 MS.gene006260:CDS 35.0%
GAAGTCAAAATTCCACCATT+GGG + chr1.1:72017348-72017367 None:intergenic 35.0%
GAGTGAGTCTATGAAGAAAT+TGG - chr1.1:72016915-72016934 MS.gene006260:intron 35.0%
GCTCAAATATACAAAGGAAG+AGG + chr1.1:72018767-72018786 None:intergenic 35.0%
GTAGTATCCTCTATAAGACA+AGG - chr1.1:72018029-72018048 MS.gene006260:intron 35.0%
GTCAGATTGAGATATTCACA+TGG - chr1.1:72017882-72017901 MS.gene006260:CDS 35.0%
TACTCATCTGTCAAACATCA+GGG - chr1.1:72017212-72017231 MS.gene006260:intron 35.0%
TCTCATCTTAGCATTCAACA+AGG - chr1.1:72018057-72018076 MS.gene006260:intron 35.0%
TCTGTTCAACAGAATTGACT+GGG + chr1.1:72018848-72018867 None:intergenic 35.0%
TGTTTATGCTCCTCAATTTC+AGG - chr1.1:72017799-72017818 MS.gene006260:CDS 35.0%
TTAACAGATTGGGGTGAAAT+GGG - chr1.1:72018644-72018663 MS.gene006260:intron 35.0%
TTCTGTTCAACAGAATTGAC+TGG + chr1.1:72018849-72018868 None:intergenic 35.0%
TTGTTGAATGCTAAGATGAG+AGG + chr1.1:72018058-72018077 None:intergenic 35.0%
TTTAACAGATTGGGGTGAAA+TGG - chr1.1:72018643-72018662 MS.gene006260:intron 35.0%
! AACCATTTTCCTGTAGTTTC+AGG - chr1.1:72018732-72018751 MS.gene006260:intron 35.0%
! ACCATTTTCCTGTAGTTTCA+GGG - chr1.1:72018733-72018752 MS.gene006260:intron 35.0%
! ATTATTGTTGTTGGAATGGC+AGG - chr1.1:72016991-72017010 MS.gene006260:intron 35.0%
! TTAAAAGGTCTTATGCTTCG+TGG - chr1.1:72018555-72018574 MS.gene006260:CDS 35.0%
! TTGGACTAGAACAACAAATG+AGG + chr1.1:72017705-72017724 None:intergenic 35.0%
!! ACGTAGTAGTTTTGCTGATT+TGG - chr1.1:72017127-72017146 MS.gene006260:intron 35.0%
!! CTAGTGGATGAAAGATTTTG+AGG - chr1.1:72018942-72018961 MS.gene006260:intron 35.0%
!! GAACTTGATAGCTGTTTTCA+AGG + chr1.1:72018418-72018437 None:intergenic 35.0%
!! GTCTTTTAACTCACTACAAC+AGG - chr1.1:72018218-72018237 MS.gene006260:intron 35.0%
!!! CTGCTTCATTTTTTTATGCC+AGG - chr1.1:72017562-72017581 MS.gene006260:intron 35.0%
AACTACATAGGCAACTACAG+TGG + chr1.1:72017954-72017973 None:intergenic 40.0%
ACCCTGAAACTACAGGAAAA+TGG + chr1.1:72018737-72018756 None:intergenic 40.0%
ACGAGGTGTATCAACTACAT+AGG + chr1.1:72017966-72017985 None:intergenic 40.0%
ACTACATAGGCAACTACAGT+GGG + chr1.1:72017953-72017972 None:intergenic 40.0%
ACTCATCTGTCAAACATCAG+GGG - chr1.1:72017213-72017232 MS.gene006260:intron 40.0%
ACTCATTTGTGTTAAGGGAG+TGG - chr1.1:72017156-72017175 MS.gene006260:intron 40.0%
ATATTCACATGGTCTGCTTC+TGG - chr1.1:72017893-72017912 MS.gene006260:CDS 40.0%
CAACAGAATTGACTGGGTAT+TGG + chr1.1:72018842-72018861 None:intergenic 40.0%
CCTGTAGTTTCAGGGTTTAT+GGG - chr1.1:72018741-72018760 MS.gene006260:CDS 40.0%
CTCATTTGTGTTAAGGGAGT+GGG - chr1.1:72017157-72017176 MS.gene006260:intron 40.0%
GAGGTAACCTTGTCTTATAG+AGG + chr1.1:72018039-72018058 None:intergenic 40.0%
GGTGAAATGGGAAGCAATAT+TGG - chr1.1:72018656-72018675 MS.gene006260:intron 40.0%
GTCATGAAGCAATTCAACCT+TGG - chr1.1:72017321-72017340 MS.gene006260:intron 40.0%
GTGAATATCTCAATCTGACC+AGG + chr1.1:72017881-72017900 None:intergenic 40.0%
TCAACTTGACTATGTTCTCG+TGG - chr1.1:72017850-72017869 MS.gene006260:CDS 40.0%
TCCTGTAGTTTCAGGGTTTA+TGG - chr1.1:72018740-72018759 MS.gene006260:CDS 40.0%
TTATGTGATGAATCTCGACC+CGG - chr1.1:72017236-72017255 MS.gene006260:intron 40.0%
TTTAACTCAGAGCCTTTCTC+TGG - chr1.1:72019008-72019027 MS.gene006260:intron 40.0%
!! AGAAAGTACTTGAGAGTCAC+CGG + chr1.1:72016653-72016672 None:intergenic 40.0%
AACTACAGTGGGAAATGTGG+AGG + chr1.1:72017942-72017961 None:intergenic 45.0%
AAGTGAATAAGCGGCGAGTT+TGG + chr1.1:72016676-72016695 None:intergenic 45.0%
ACAACATGAGTTTGCCTTGG+AGG - chr1.1:72018090-72018109 MS.gene006260:intron 45.0%
AGCACAACATGAGTTTGCCT+TGG - chr1.1:72018087-72018106 MS.gene006260:intron 45.0%
ATTCATCCAGTGCCAGAGAA+AGG + chr1.1:72019023-72019042 None:intergenic 45.0%
CCCATAAACCCTGAAACTAC+AGG + chr1.1:72018744-72018763 None:intergenic 45.0%
GAAGTTAGGTGAACCAGAAG+AGG + chr1.1:72016953-72016972 None:intergenic 45.0%
GACATTGAAGGTTCCTCTTC+TGG - chr1.1:72016937-72016956 MS.gene006260:intron 45.0%
GACTACACTCATGCATAGGT+TGG - chr1.1:72017182-72017201 MS.gene006260:intron 45.0%
GGAAGACTACACTCATGCAT+AGG - chr1.1:72017178-72017197 MS.gene006260:intron 45.0%
GTTTGCAACCAAGTTCGATG+AGG - chr1.1:72017377-72017396 MS.gene006260:intron 45.0%
TATGTTCTCGTGGATACTCC+TGG - chr1.1:72017860-72017879 MS.gene006260:CDS 45.0%
TGAGGACCTAAAACGAGTCA+CGG + chr1.1:72017687-72017706 None:intergenic 45.0%
TTCCATGTATTCCTCTGCAC+TGG + chr1.1:72019124-72019143 None:intergenic 45.0%
!! TATGGAAGTGTCATGACAGC+CGG + chr1.1:72017258-72017277 None:intergenic 45.0%
AAATTCCACCATTGGGGCCA+AGG + chr1.1:72017341-72017360 None:intergenic 50.0%
AGCCAGTGCAGAGGAATACA+TGG - chr1.1:72019119-72019138 MS.gene006260:CDS 50.0%
CAAGCTCAAGGAAAGCTACC+TGG + chr1.1:72017583-72017602 None:intergenic 50.0%
CAATTCAACCTTGGCCCCAA+TGG - chr1.1:72017330-72017349 MS.gene006260:intron 50.0%
GAGTAACGCTGTGTCTATCG+TGG + chr1.1:72016763-72016782 None:intergenic 50.0%
GATCTGAACTTGCAGCTGCT+TGG + chr1.1:72018972-72018991 None:intergenic 50.0%
GCTGGAGTTTCTGCAGTTAC+TGG - chr1.1:72019063-72019082 MS.gene006260:intron 50.0%
GCTGTGTCTGTGATGAGGTT+TGG - chr1.1:72018366-72018385 MS.gene006260:CDS 50.0%
GGCAACTACAGTGGGAAATG+TGG + chr1.1:72017945-72017964 None:intergenic 50.0%
GTTTCTGCAGTTACTGGTGC+TGG - chr1.1:72019069-72019088 MS.gene006260:intron 50.0%
TTTGGGCTGTGTCTGTGATG+AGG - chr1.1:72018361-72018380 MS.gene006260:CDS 50.0%
! CACTGTCCGTGACTCGTTTT+AGG - chr1.1:72017678-72017697 MS.gene006260:CDS 50.0%
! GTGGTAGGATTTTCTGCACG+AGG + chr1.1:72017983-72018002 None:intergenic 50.0%
! GTTACTGGTGCTGGAATCGA+AGG - chr1.1:72019078-72019097 MS.gene006260:intron 50.0%
!! ATGGAAGTGTCATGACAGCC+GGG + chr1.1:72017257-72017276 None:intergenic 50.0%
!! ATTTCCATGGGGGTGTCTTC+GGG + chr1.1:72016625-72016644 None:intergenic 50.0%
!! CATTTCCATGGGGGTGTCTT+CGG + chr1.1:72016626-72016645 None:intergenic 50.0%
!! TCACCGGCTTCCATTTCCAT+GGG + chr1.1:72016637-72016656 None:intergenic 50.0%
ACCCCCATGGAAATGGAAGC+CGG - chr1.1:72016631-72016650 MS.gene006260:CDS 55.0%
AGCTGTTGAAGCCAGTGCAG+AGG - chr1.1:72019110-72019129 MS.gene006260:CDS 55.0%
CGAAGACACCCCCATGGAAA+TGG - chr1.1:72016624-72016643 MS.gene006260:CDS 55.0%
GTTGGAATGGCAGGTCAGTC+AGG - chr1.1:72017000-72017019 MS.gene006260:intron 55.0%
TCAGAGCCTTTCTCTGGCAC+TGG - chr1.1:72019014-72019033 MS.gene006260:intron 55.0%
TTCAACCTTGGCCCCAATGG+TGG - chr1.1:72017333-72017352 MS.gene006260:intron 55.0%
! ACCGGCTTCCATTTCCATGG+GGG + chr1.1:72016635-72016654 None:intergenic 55.0%
!! CACCGGCTTCCATTTCCATG+GGG + chr1.1:72016636-72016655 None:intergenic 55.0%
!! GTCACCGGCTTCCATTTCCA+TGG + chr1.1:72016638-72016657 None:intergenic 55.0%
!! TTTCCATGGGGGTGTCTTCG+GGG + chr1.1:72016624-72016643 None:intergenic 55.0%
TAACCCCGAAGACACCCCCA+TGG - chr1.1:72016618-72016637 MS.gene006260:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72016589 72019158 72016589 ID=MS.gene006260
chr1.1 mRNA 72016589 72019158 72016589 ID=MS.gene006260.t1;Parent=MS.gene006260
chr1.1 exon 72019084 72019158 72019084 ID=MS.gene006260.t1.exon1;Parent=MS.gene006260.t1
chr1.1 CDS 72019084 72019158 72019084 ID=cds.MS.gene006260.t1;Parent=MS.gene006260.t1
chr1.1 exon 72018735 72018858 72018735 ID=MS.gene006260.t1.exon2;Parent=MS.gene006260.t1
chr1.1 CDS 72018735 72018858 72018735 ID=cds.MS.gene006260.t1;Parent=MS.gene006260.t1
chr1.1 exon 72018349 72018575 72018349 ID=MS.gene006260.t1.exon3;Parent=MS.gene006260.t1
chr1.1 CDS 72018349 72018575 72018349 ID=cds.MS.gene006260.t1;Parent=MS.gene006260.t1
chr1.1 exon 72017636 72017926 72017636 ID=MS.gene006260.t1.exon4;Parent=MS.gene006260.t1
chr1.1 CDS 72017636 72017926 72017636 ID=cds.MS.gene006260.t1;Parent=MS.gene006260.t1
chr1.1 exon 72016589 72016801 72016589 ID=MS.gene006260.t1.exon5;Parent=MS.gene006260.t1
chr1.1 CDS 72016589 72016801 72016589 ID=cds.MS.gene006260.t1;Parent=MS.gene006260.t1
Gene Sequence

>MS.gene006260

ATGGACGCAGATAACGCTTCAAAGAACGCTAACCCCGAAGACACCCCCATGGAAATGGAAGCCGGTGACTCTCAAGTACTTTCTCCAAACTCGCCGCTTATTCACTTTCACTTTACTAATTCAAACAAAATTTAATTAGGTCAAACTTATATTCTGTTGTTGACTCACAAACCACGATAGACACAGCGTTACTCTAAAAATGATAAACCCTAAAAACGTTTTTTTTTTTTTTTTTGTATTGTTTTAATTTTGCGAGTTTAATTTGAAATTGTGAATCATGGAATGGTTTTTATTTTGAAGGAAAAAAACAAACAAAAAGAGGACCTGAGTGAGTCTATGAAGAAATTGGACATTGAAGGTTCCTCTTCTGGTTCACCTAACTTCAAAAGAAAACCTGTTATCATTATTGTTGTTGGAATGGCAGGTCAGTCAGGAAAAAATTGCTTTTACTTCTATTGCATGTTCAGTTTCGCAATGAGTTTGACAACATCACTGTCACTGCGAAACCAAACATGCACAATATAGTTTCTTTTGATATACGTAGTAGTTTTGCTGATTTGGAATATAACTCATTTGTGTTAAGGGAGTGGGAAGACTACACTCATGCATAGGTTGGTTACACATACTCATCTGTCAAACATCAGGGGTTATGTGATGAATCTCGACCCGGCTGTCATGACACTTCCATATGCTTCTAACATTGATATAAGAGACACTGTTAAGTATAAAGAAGTCATGAAGCAATTCAACCTTGGCCCCAATGGTGGAATTTTGACTTCTCTTAACTTGTTTGCAACCAAGTTCGATGAGGTTAAGTTTTCTTATCAATACCTAAACTCATGTACAGTATAATATATATATATATATATATTGCTGGTTATGGACTGATTGCATTTTGAATTCAGTTTTACTTATATATGCATTTGATGGAAATTCATACCTCTTAATATCACTGATACTAGTAACATGATCCCTGCTTCATTTTTTTATGCCAGGTAGCTTTCCTTGAGCTTGTTTGATCTTATGTTTTTGTTCCGTCCTCTAATTAAGCTATTGATATAATGCTTCAGATAATAATGTTTACACTGTCACTGTCCGTGACTCGTTTTAGGTCCTCATTTGTTGTTCTAGTCCAACAGTGCATTTGTTTTCATGCCGATATGTTTTACTTTTGTTCCCATCTACAAAACTTTAAATGCAATTTTACTAATGTTTATGCTCCTCAATTTCAGGTAATTTCTGTTATTGAGAAACGAGCAGATCAACTTGACTATGTTCTCGTGGATACTCCTGGTCAGATTGAGATATTCACATGGTCTGCTTCTGGTGCTATCATCACAGAAGCTTTTGCCTCCACATTTCCCACTGTAGTTGCCTATGTAGTTGATACACCTCGTGCAGAAAATCCTACCACTTTTATGAGCAACATGCTTTATGCTTGTAGTATCCTCTATAAGACAAGGTTACCTCTCATCTTAGCATTCAACAAGGTCGATGTAGCACAACATGAGTTTGCCTTGGAGGTATTGTTGATTTTGATGAATTTTCTTTAGCTTCAATTGTATGTAATGTATTGTTGAGATTAGTTCCTTGAAAGCTATAAAAATGATAGAATATGTTTCAGTGTTTGTCTTTTAACTCACTACAACAGGCGAGTTTAACCTGTGAGATCTAATTGATAGTTTTATCTCGGAAGTTGTTTAAACTACAAATTATTGTTGCCTTTTAAGTACTTAATTTGAACTATTAAGAGTGATAAATAAATCATGACATTTGGGCTGTGTCTGTGATGAGGTTTGGCCTGACACCAAAAGATTAATCAAACACCTTGAAAACAGCTATCAAGTTCATGGCATTCAATTGTCCTATGAATTAAGAGTTAGACTTAATTGTTCTATTTTGTATATTTTATTTATCACTCAAGCATATTTTCTTGCCTCTCTCTAATTGCACATATAAATACTTATTAAAAGGTCTTATGCTTCGTGGATTTTAACATTTCATTCAATTGGAGAAAAATTGAGTTAAAACTAAAAAGTAATTCAACTTTTAAGTTTAACAGATTGGGGTGAAATGGGAAGCAATATTGGAGTTAGTTATTAGTTTTCCCTTTCATGTTTAAGTTATTATTTTATAGGCATAAAACCATTTTCCTGTAGTTTCAGGGTTTATGGGCCTCTTCCTTTGTATATTTGAGCTGAATCTATTTGTTTCTGCTCTGATAAATAAAACAGTTACACTATTTGCACTCCAATACCCAGTCAATTCTGTTGAACAGAACTTGTGTTTTGTCTTGTTTTTACATCTGCAACTGATTTTTTTTCCTTCCTTTTGTCGAATTTGTTTTGTTTATCTAGTGGATGAAAGATTTTGAGGTATTCCAAGCAGCTGCAAGTTCAGATCAGTCATACACGTCAAATTTAACTCAGAGCCTTTCTCTGGCACTGGATGAATTTTACAGTAATTTAAGATCAGCTGGAGTTTCTGCAGTTACTGGTGCTGGAATCGAAGGCTTCTTCAAAGCTGTTGAAGCCAGTGCAGAGGAATACATGGAAACCTACAAGTATTAA
Protein sequence

>MS.gene006260.t1

MDADNASKNANPEDTPMEMEAGDSQEKNKQKEDLSESMKKLDIEGSSSGSPNFKRKPVIIIVVGMAGSGKTTLMHRLVTHTHLSNIRGYVMNLDPAVMTLPYASNIDIRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIEKRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRAENPTTFMSNMLYACSILYKTRLPLILAFNKVDVAQHEFALEWMKDFEVFQAAASSDQSYTSNLTQSLSLALDEFYSNLRSAGVSAVTGAGIEGFFKAVEASAEEYMETYKY