Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49124.t1 | XP_003592221.1 | 99.4 | 352 | 2 | 0 | 1 | 352 | 1 | 352 | 9.20E-187 | 662.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49124.t1 | Q8W586 | 66.6 | 335 | 111 | 1 | 19 | 353 | 4 | 337 | 1.5e-113 | 411.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49124.t1 | G7IEN9 | 99.4 | 352 | 2 | 0 | 1 | 352 | 1 | 352 | 6.6e-187 | 662.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49124 | MS.gene47704 | PPI |
| MS.gene49124 | MS.gene63088 | PPI |
| MS.gene49124 | MS.gene25308 | PPI |
| MS.gene49124 | MS.gene25309 | PPI |
| MS.gene49124 | MS.gene038121 | PPI |
| MS.gene49124 | MS.gene34847 | PPI |
| MS.gene038210 | MS.gene49124 | PPI |
| MS.gene49124 | MS.gene99977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49124.t1 | MTR_1g100240 | 98.990 | 396 | 3 | 1 | 1 | 395 | 1 | 396 | 0.0 | 802 |
| MS.gene49124.t1 | MTR_8g062340 | 30.688 | 189 | 122 | 3 | 61 | 244 | 6 | 190 | 1.31e-19 | 89.0 |
| MS.gene49124.t1 | MTR_5g089950 | 31.250 | 192 | 117 | 5 | 61 | 244 | 6 | 190 | 1.66e-19 | 88.2 |
| MS.gene49124.t1 | MTR_3g080040 | 29.255 | 188 | 128 | 3 | 61 | 245 | 6 | 191 | 6.13e-19 | 86.3 |
| MS.gene49124.t1 | MTR_8g062340 | 30.688 | 189 | 122 | 3 | 61 | 244 | 6 | 190 | 1.12e-18 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49124.t1 | AT4G21800 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| MS.gene49124.t1 | AT4G21800 | 72.571 | 350 | 95 | 1 | 19 | 368 | 4 | 352 | 0.0 | 531 |
| MS.gene49124.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 6.09e-19 | 86.3 |
| MS.gene49124.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 6.09e-19 | 86.3 |
| MS.gene49124.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 6.09e-19 | 86.3 |
| MS.gene49124.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 6.09e-19 | 86.3 |
| MS.gene49124.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 6.09e-19 | 86.3 |
| MS.gene49124.t1 | AT4G12790 | 30.857 | 175 | 118 | 3 | 61 | 233 | 6 | 179 | 6.09e-19 | 86.3 |
| MS.gene49124.t1 | AT5G22370 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.75e-15 | 77.0 |
| MS.gene49124.t1 | AT5G22370 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.75e-15 | 77.0 |
| MS.gene49124.t1 | AT5G22370 | 27.957 | 186 | 131 | 3 | 61 | 244 | 6 | 190 | 1.75e-15 | 77.0 |
Find 85 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATTGAAGGTTCCTCTTC+TGG | 0.208586 | 1.3:-68926528 | MS.gene49124:CDS |
| TACTCATCTGTCAAACATTA+GGG | 0.298804 | 1.3:-68926225 | MS.gene49124:CDS |
| GATGATGATGATGTTGATTT+CGG | 0.300467 | 1.3:-68924016 | MS.gene49124:CDS |
| ATACTCATCTGTCAAACATT+AGG | 0.301640 | 1.3:-68926226 | MS.gene49124:CDS |
| CCTGTTATCATCATTGTTGT+TGG | 0.328714 | 1.3:-68926483 | MS.gene49124:CDS |
| ATGATGATGATGTTGATTTC+GGG | 0.336647 | 1.3:-68924015 | MS.gene49124:CDS |
| CCAACAACAATGATGATAAC+AGG | 0.357092 | 1.3:+68926483 | None:intergenic |
| GTTTATCCATGTTCTCCTTC+CGG | 0.357858 | 1.3:+68924137 | None:intergenic |
| ATATTCACATGGTCTGCTTC+TGG | 0.363085 | 1.3:-68925574 | MS.gene49124:CDS |
| GAGTGAGTCTATGAAGAAAT+TGG | 0.370198 | 1.3:-68926550 | MS.gene49124:CDS |
| GAAGTCAAAATTCCACCATT+GGG | 0.397466 | 1.3:+68926092 | None:intergenic |
| TACAGTAATTTAAGATCAGC+TGG | 0.416370 | 1.3:-68924423 | MS.gene49124:CDS |
| ATCATTGTTGTTGGAATGGC+AGG | 0.426570 | 1.3:-68926474 | MS.gene49124:intron |
| TTCCATGTATTCCTCTGCAC+TGG | 0.431616 | 1.3:+68924347 | None:intergenic |
| GTTTCTGCAGTCACTGGTGC+TGG | 0.432331 | 1.3:-68924399 | MS.gene49124:CDS |
| CTTATTTGTGTTTAGGGAGT+GGG | 0.435119 | 1.3:-68926280 | MS.gene49124:intron |
| GGATGAAGAGGATGAGGAAA+TGG | 0.438782 | 1.3:-68924038 | MS.gene49124:CDS |
| TTTAACTCAGAGCCTTTCTC+TGG | 0.457020 | 1.3:-68924460 | MS.gene49124:CDS |
| ATGAAGAAATTGGACATTGA+AGG | 0.465533 | 1.3:-68926540 | MS.gene49124:CDS |
| GGACGAGGATGAAGAGGATG+AGG | 0.467374 | 1.3:-68924044 | MS.gene49124:CDS |
| ACAACATGAGTTTGCCTTGG+AGG | 0.468476 | 1.3:-68925377 | MS.gene49124:intron |
| AAATTCCACCATTGGGGCCA+AGG | 0.471975 | 1.3:+68926099 | None:intergenic |
| AGGAGGGAGATGGAGAAATC+TGG | 0.473893 | 1.3:-68924112 | MS.gene49124:CDS |
| GATCTGAACTTGCAGCTGCT+TGG | 0.481512 | 1.3:+68924499 | None:intergenic |
| GCTGGAGTTTCTGCAGTCAC+TGG | 0.485036 | 1.3:-68924405 | MS.gene49124:CDS |
| GTCACCGGCTTCCATTTCCA+TGG | 0.485145 | 1.3:+68926826 | None:intergenic |
| TCACCGGCTTCCATTTCCAT+GGG | 0.489818 | 1.3:+68926827 | None:intergenic |
| ATATCAATGTTAGAAGCATA+TGG | 0.489870 | 1.3:+68926164 | None:intergenic |
| CAATTCAACCTTGGCCCCAA+TGG | 0.493147 | 1.3:-68926107 | MS.gene49124:CDS |
| AGAAGTCAAAATTCCACCAT+TGG | 0.493187 | 1.3:+68926091 | None:intergenic |
| AAACTTAACCTCATCAAACT+TGG | 0.494409 | 1.3:+68926052 | None:intergenic |
| TCAGAGCCTTTCTCTGGCAC+TGG | 0.495072 | 1.3:-68924454 | MS.gene49124:CDS |
| AGCACAACATGAGTTTGCCT+TGG | 0.507905 | 1.3:-68925380 | MS.gene49124:CDS |
| AAGCATGTTGCTCATAAAAG+TGG | 0.519169 | 1.3:+68925468 | None:intergenic |
| AGGAGAACATGGATAAACTT+AGG | 0.522057 | 1.3:-68924132 | MS.gene49124:CDS |
| TATGGAAGTGTCATGACAGC+CGG | 0.522098 | 1.3:+68926182 | None:intergenic |
| GTCACTGGTGCTGGAATCGA+AGG | 0.525200 | 1.3:-68924390 | MS.gene49124:CDS |
| ATTCATCCAGTGCCAGAGAA+AGG | 0.526358 | 1.3:+68924448 | None:intergenic |
| TATGTTCTCGTGGATACTCC+TGG | 0.533697 | 1.3:-68925607 | MS.gene49124:CDS |
| TTCAACCTTGGCCCCAATGG+TGG | 0.539374 | 1.3:-68926104 | MS.gene49124:CDS |
| AGCCAGTGCAGAGGAATACA+TGG | 0.540021 | 1.3:-68924349 | MS.gene49124:CDS |
| GAAGTTAGGTGAACCAGAAG+AGG | 0.546699 | 1.3:+68926515 | None:intergenic |
| CACCCTCCGCAACATGGACG+CGG | 0.548806 | 1.3:-68926885 | None:intergenic |
| TATCATCATTGTTGTTGGAA+TGG | 0.555919 | 1.3:-68926478 | MS.gene49124:CDS |
| AGAGGAGGACGAGGATGAAG+AGG | 0.556313 | 1.3:-68924050 | MS.gene49124:CDS |
| GGATAAACTTAGGAGGGAGA+TGG | 0.557760 | 1.3:-68924122 | MS.gene49124:CDS |
| AACAACACTCATGCATAGGT+TGG | 0.559646 | 1.3:-68926255 | MS.gene49124:CDS |
| AGAAAGTACTTGAGAGTCAC+CGG | 0.565078 | 1.3:+68926811 | None:intergenic |
| GAAACTGTAGTGTTGAGCAC+TGG | 0.570041 | 1.3:-68924085 | MS.gene49124:CDS |
| AGCTGTTGGAAGAAAATCGC+CGG | 0.572545 | 1.3:-68924156 | MS.gene49124:CDS |
| AAATCGCCGGAAGGAGAACA+TGG | 0.572726 | 1.3:-68924143 | MS.gene49124:CDS |
| ATGGAAGTGTCATGACAGCC+GGG | 0.578869 | 1.3:+68926183 | None:intergenic |
| GGCAACTACAGTGGGAAATG+TGG | 0.579709 | 1.3:+68925525 | None:intergenic |
| GTTATGAAGCAATTCAACCT+TGG | 0.585004 | 1.3:-68926116 | MS.gene49124:CDS |
| ATTTCTTCATAGACTCACTC+AGG | 0.587164 | 1.3:+68926553 | None:intergenic |
| GTGAATATCTCAATCTGACC+AGG | 0.587935 | 1.3:+68925589 | None:intergenic |
| AGAACATGGATAAACTTAGG+AGG | 0.588077 | 1.3:-68924129 | MS.gene49124:CDS |
| GTTCATAAAATCACATCAGA+AGG | 0.589818 | 1.3:+68923931 | None:intergenic |
| AGATGAGGACGAAGATGAAG+AGG | 0.599265 | 1.3:-68923966 | MS.gene49124:CDS |
| TCAACTTGACTATGTTCTCG+TGG | 0.600433 | 1.3:-68925617 | MS.gene49124:CDS |
| AGGGAGATGGAGAAATCTGG+AGG | 0.604309 | 1.3:-68924109 | MS.gene49124:CDS |
| ACTACATAGGCAACTACAGT+GGG | 0.605400 | 1.3:+68925517 | None:intergenic |
| ACGAGGTGTATCAACTACAT+AGG | 0.606135 | 1.3:+68925504 | None:intergenic |
| ACGTGAAGAGAAACAGCTGT+TGG | 0.606507 | 1.3:-68924170 | MS.gene49124:CDS |
| GTTTGCAACCAAGTTTGATG+AGG | 0.606908 | 1.3:-68926060 | MS.gene49124:intron |
| GAACATGGATAAACTTAGGA+GGG | 0.606999 | 1.3:-68924128 | MS.gene49124:CDS |
| TTATGTGATGAATCTCGACC+CGG | 0.607451 | 1.3:-68926201 | MS.gene49124:CDS |
| GAGGTAACCTTGTCTTATAG+AGG | 0.608238 | 1.3:+68925431 | None:intergenic |
| CAAAATCAAGAATACCTCCA+AGG | 0.620030 | 1.3:+68925363 | None:intergenic |
| TTGTTGAATGCTAAGATGAG+AGG | 0.620285 | 1.3:+68925412 | None:intergenic |
| AACTACAGTGGGAAATGTGG+AGG | 0.621918 | 1.3:+68925528 | None:intergenic |
| ATGTTGCTCATAAAAGTGGT+AGG | 0.622477 | 1.3:+68925472 | None:intergenic |
| CGGGACATACACTGATGATG+AGG | 0.622499 | 1.3:-68923996 | MS.gene49124:CDS |
| AGCTGTTGAAGCCAGTGCAG+AGG | 0.624332 | 1.3:-68924358 | MS.gene49124:CDS |
| CACCGGCTTCCATTTCCATG+GGG | 0.630823 | 1.3:+68926828 | None:intergenic |
| GGAAAACAACACTCATGCAT+AGG | 0.633710 | 1.3:-68926259 | MS.gene49124:CDS |
| ACCGGCTTCCATTTCCATGG+GGG | 0.657686 | 1.3:+68926829 | None:intergenic |
| GTTGGAAGAAAATCGCCGGA+AGG | 0.664727 | 1.3:-68924152 | MS.gene49124:CDS |
| AAGTCAAAATTCCACCATTG+GGG | 0.670613 | 1.3:+68926093 | None:intergenic |
| AACTACATAGGCAACTACAG+TGG | 0.686317 | 1.3:+68925516 | None:intergenic |
| GTAGTATCCTCTATAAGACA+AGG | 0.691493 | 1.3:-68925438 | MS.gene49124:CDS |
| ACTCATCTGTCAAACATTAG+GGG | 0.701476 | 1.3:-68926224 | MS.gene49124:CDS |
| TCTCATCTTAGCATTCAACA+AGG | 0.708282 | 1.3:-68925410 | MS.gene49124:CDS |
| TGATGAGGATGCTATAGATG+AGG | 0.711617 | 1.3:-68923981 | MS.gene49124:CDS |
| GTCAGATTGAGATATTCACA+TGG | 0.740453 | 1.3:-68925585 | MS.gene49124:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAACAAAATTTAATT+AGG | - | chr1.3:68924063-68924082 | MS.gene49124:CDS | 10.0% |
| !! | ACATATAAATACTTATTAAA+AGG | - | chr1.3:68925890-68925909 | MS.gene49124:intron | 10.0% |
| !!! | AAAAAAAAAAAAACGTTTTT+AGG | + | chr1.3:68924157-68924176 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAACGTTTTTA+GGG | + | chr1.3:68924156-68924175 | None:intergenic | 10.0% |
| !!! | TGTTTAAGTTATTATTTTAT+AGG | - | chr1.3:68926054-68926073 | MS.gene49124:intron | 10.0% |
| !! | AATAATAACTTAAACATGAA+AGG | + | chr1.3:68926050-68926069 | None:intergenic | 15.0% |
| !! | AATATAACTTATTTGTGTTT+AGG | - | chr1.3:68924531-68924550 | MS.gene49124:intron | 15.0% |
| !! | ATAATAACTTAAACATGAAA+GGG | + | chr1.3:68926049-68926068 | None:intergenic | 15.0% |
| !! | ATATAACTTATTTGTGTTTA+GGG | - | chr1.3:68924532-68924551 | MS.gene49124:intron | 15.0% |
| !! | CTTTCTATATATTATTGTAT+AGG | - | chr1.3:68924491-68924510 | MS.gene49124:CDS | 15.0% |
| !!! | ATTTTAACATTTCATTCAAT+TGG | - | chr1.3:68925928-68925947 | MS.gene49124:intron | 15.0% |
| !! | AATACTTCATATTGCATATT+TGG | - | chr1.3:68924372-68924391 | MS.gene49124:CDS | 20.0% |
| !! | ATTATACTGTATATGAGTTT+AGG | + | chr1.3:68924804-68924823 | None:intergenic | 20.0% |
| !! | CAAAATCAAAAGTGAAATAA+TGG | + | chr1.3:68926545-68926564 | None:intergenic | 20.0% |
| !! | CAGTATAATATATATATTGC+TGG | - | chr1.3:68924815-68924834 | MS.gene49124:intron | 20.0% |
| !! | GATAATAAATCATGACATTT+GGG | - | chr1.3:68925694-68925713 | MS.gene49124:intron | 20.0% |
| !! | GTTCAAATTAAGTACTTAAA+AGG | + | chr1.3:68925664-68925683 | None:intergenic | 20.0% |
| !! | TATATCAATAGCTTAATTAG+AGG | + | chr1.3:68924981-68925000 | None:intergenic | 20.0% |
| !! | TGATAATAAATCATGACATT+TGG | - | chr1.3:68925693-68925712 | MS.gene49124:intron | 20.0% |
| !! | TTATACTGTATATGAGTTTA+GGG | + | chr1.3:68924803-68924822 | None:intergenic | 20.0% |
| !!! | AACTTTTAAGTTTAACAGAT+TGG | - | chr1.3:68925983-68926002 | MS.gene49124:intron | 20.0% |
| !!! | AATATATATATTGCTGGTTA+TGG | - | chr1.3:68924821-68924840 | MS.gene49124:intron | 20.0% |
| !!! | ACTTTTAAGTTTAACAGATT+GGG | - | chr1.3:68925984-68926003 | MS.gene49124:intron | 20.0% |
| !!! | TAATTTGAAATTGTGAATCA+TGG | - | chr1.3:68924200-68924219 | MS.gene49124:intron | 20.0% |
| !!! | TATCATTTTTATAGCTTTCA+AGG | + | chr1.3:68925531-68925550 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTGCATTTAGTT+AGG | - | chr1.3:68926554-68926573 | MS.gene49124:CDS | 20.0% |
| ! | AAGTCTAACTCTTAATTCAT+AGG | + | chr1.3:68925806-68925825 | None:intergenic | 25.0% |
| ! | GGAAAAAAACAAACAAAAAG+AGG | - | chr1.3:68924241-68924260 | MS.gene49124:intron | 25.0% |
| ! | GGAACAAAAGTAAAACATAT+CGG | + | chr1.3:68925098-68925117 | None:intergenic | 25.0% |
| ! | TAAACAATATTGAGCATGTT+TGG | + | chr1.3:68924465-68924484 | None:intergenic | 25.0% |
| ! | TTTCTATTATGCGATGTTTA+GGG | - | chr1.3:68926609-68926628 | MS.gene49124:intron | 25.0% |
| !! | ATATCAATGTTAGAAGCATA+TGG | + | chr1.3:68924657-68924676 | None:intergenic | 25.0% |
| !! | GTTTTACTCATATATGCATT+TGG | - | chr1.3:68924865-68924884 | MS.gene49124:intron | 25.0% |
| !! | TTTTCTATTATGCGATGTTT+AGG | - | chr1.3:68926608-68926627 | MS.gene49124:intron | 25.0% |
| !!! | AACTTGTTTTGTTTATCTAG+TGG | - | chr1.3:68926276-68926295 | MS.gene49124:intron | 25.0% |
| !!! | CTTTTAAGTTTAACAGATTG+GGG | - | chr1.3:68925985-68926004 | MS.gene49124:intron | 25.0% |
| !!! | GCATTTAAAGTTTTGTAGAT+GGG | + | chr1.3:68925119-68925138 | None:intergenic | 25.0% |
| !!! | TGCATTTAAAGTTTTGTAGA+TGG | + | chr1.3:68925120-68925139 | None:intergenic | 25.0% |
| !!! | TGGAATGGTTTTTATTTTGA+AGG | - | chr1.3:68924220-68924239 | MS.gene49124:intron | 25.0% |
| AAACTTAACCTCATCAAACT+TGG | + | chr1.3:68924769-68924788 | None:intergenic | 30.0% | |
| AACAAAACAAGTTCGACAAA+AGG | + | chr1.3:68926269-68926288 | None:intergenic | 30.0% | |
| AACTATCAATTAGATCTCAC+AGG | + | chr1.3:68925604-68925623 | None:intergenic | 30.0% | |
| AATGAAGCAGTGATATTAAG+AGG | + | chr1.3:68924903-68924922 | None:intergenic | 30.0% | |
| ACAGAAATTACCTGAAATTG+AGG | + | chr1.3:68925163-68925182 | None:intergenic | 30.0% | |
| ATACTCATCTGTCAAACATT+AGG | - | chr1.3:68924592-68924611 | MS.gene49124:intron | 30.0% | |
| ATGAAGAAATTGGACATTGA+AGG | - | chr1.3:68924278-68924297 | MS.gene49124:intron | 30.0% | |
| CATTAAAACAAATGCACTGT+TGG | + | chr1.3:68925075-68925094 | None:intergenic | 30.0% | |
| GATTCAGCTCAAATATACAA+AGG | + | chr1.3:68926123-68926142 | None:intergenic | 30.0% | |
| GTAAAGTGAAAGTGAATAAG+CGG | + | chr1.3:68924042-68924061 | None:intergenic | 30.0% | |
| TACTCATCTGTCAAACATTA+GGG | - | chr1.3:68924593-68924612 | MS.gene49124:intron | 30.0% | |
| TGAAATTGTGAATCATGGAA+TGG | - | chr1.3:68924205-68924224 | MS.gene49124:intron | 30.0% | |
| TTACTCATATATGCATTTGG+TGG | - | chr1.3:68924868-68924887 | MS.gene49124:intron | 30.0% | |
| TTATATGTGCAATTAGAGAG+AGG | + | chr1.3:68925878-68925897 | None:intergenic | 30.0% | |
| ! | TACAGTAATTTAAGATCAGC+TGG | - | chr1.3:68926395-68926414 | MS.gene49124:intron | 30.0% |
| ! | TATCATCATTGTTGTTGGAA+TGG | - | chr1.3:68924340-68924359 | MS.gene49124:CDS | 30.0% |
| ! | TTGATTAATCTTTTAGCGTC+AGG | + | chr1.3:68925742-68925761 | None:intergenic | 30.0% |
| !! | ATGATGATGATGTTGATTTC+GGG | - | chr1.3:68926803-68926822 | MS.gene49124:intron | 30.0% |
| !! | GATGATGATGATGTTGATTT+CGG | - | chr1.3:68926802-68926821 | MS.gene49124:intron | 30.0% |
| !! | TATAGGTAGTTTTGCTGATT+TGG | - | chr1.3:68924508-68924527 | MS.gene49124:CDS | 30.0% |
| !!! | ACAGGTTTTCTTTTGAAGTT+AGG | + | chr1.3:68924320-68924339 | None:intergenic | 30.0% |
| AAACAAGTTCGACAAAAGGA+AGG | + | chr1.3:68926265-68926284 | None:intergenic | 35.0% | |
| AAGCATGTTGCTCATAAAAG+TGG | + | chr1.3:68925353-68925372 | None:intergenic | 35.0% | |
| AAGTCAAAATTCCACCATTG+GGG | + | chr1.3:68924728-68924747 | None:intergenic | 35.0% | |
| ACTCATCTGTCAAACATTAG+GGG | - | chr1.3:68924594-68924613 | MS.gene49124:intron | 35.0% | |
| ACTTATTTGTGTTTAGGGAG+TGG | - | chr1.3:68924537-68924556 | MS.gene49124:intron | 35.0% | |
| AGAACATGGATAAACTTAGG+AGG | - | chr1.3:68926689-68926708 | MS.gene49124:intron | 35.0% | |
| AGAAGTCAAAATTCCACCAT+TGG | + | chr1.3:68924730-68924749 | None:intergenic | 35.0% | |
| AGGAGAACATGGATAAACTT+AGG | - | chr1.3:68926686-68926705 | MS.gene49124:intron | 35.0% | |
| ATGTTGCTCATAAAAGTGGT+AGG | + | chr1.3:68925349-68925368 | None:intergenic | 35.0% | |
| ATTGAGCATGTTTGGTATAG+CGG | + | chr1.3:68924457-68924476 | None:intergenic | 35.0% | |
| ATTTCTTCATAGACTCACTC+AGG | + | chr1.3:68924268-68924287 | None:intergenic | 35.0% | |
| CAAAATCAAGAATACCTCCA+AGG | + | chr1.3:68925458-68925477 | None:intergenic | 35.0% | |
| CAACAGAATTGACTAGGTAT+TGG | + | chr1.3:68926192-68926211 | None:intergenic | 35.0% | |
| CAAGAGCAGTTAATACTTGT+AGG | + | chr1.3:68926498-68926517 | None:intergenic | 35.0% | |
| CCAACAACAATGATGATAAC+AGG | + | chr1.3:68924338-68924357 | None:intergenic | 35.0% | |
| CCTGTTATCATCATTGTTGT+TGG | - | chr1.3:68924335-68924354 | MS.gene49124:intron | 35.0% | |
| CTCAAGCTTCAACAAAATCA+CGG | - | chr1.3:68924428-68924447 | MS.gene49124:CDS | 35.0% | |
| CTTATTTGTGTTTAGGGAGT+GGG | - | chr1.3:68924538-68924557 | MS.gene49124:intron | 35.0% | |
| GAAAACAGCTATCAAGTTCA+TGG | - | chr1.3:68925769-68925788 | MS.gene49124:intron | 35.0% | |
| GAACATGGATAAACTTAGGA+GGG | - | chr1.3:68926690-68926709 | MS.gene49124:intron | 35.0% | |
| GAAGTCAAAATTCCACCATT+GGG | + | chr1.3:68924729-68924748 | None:intergenic | 35.0% | |
| GAGTGAGTCTATGAAGAAAT+TGG | - | chr1.3:68924268-68924287 | MS.gene49124:intron | 35.0% | |
| GCTCAAATATACAAAGGAAG+AGG | + | chr1.3:68926117-68926136 | None:intergenic | 35.0% | |
| GTAGTATCCTCTATAAGACA+AGG | - | chr1.3:68925380-68925399 | MS.gene49124:CDS | 35.0% | |
| GTCAGATTGAGATATTCACA+TGG | - | chr1.3:68925233-68925252 | MS.gene49124:intron | 35.0% | |
| GTTATGAAGCAATTCAACCT+TGG | - | chr1.3:68924702-68924721 | MS.gene49124:intron | 35.0% | |
| TCTCATCTTAGCATTCAACA+AGG | - | chr1.3:68925408-68925427 | MS.gene49124:CDS | 35.0% | |
| TCTGTTCAACAGAATTGACT+AGG | + | chr1.3:68926198-68926217 | None:intergenic | 35.0% | |
| TGGTTTGAAAAACAAAGAGG+AGG | - | chr1.3:68926753-68926772 | MS.gene49124:intron | 35.0% | |
| TGTTTATGCTCCTCAATTTC+AGG | - | chr1.3:68925150-68925169 | MS.gene49124:intron | 35.0% | |
| TTAACAGATTGGGGTGAAAT+GGG | - | chr1.3:68925994-68926013 | MS.gene49124:intron | 35.0% | |
| TTGTTGAATGCTAAGATGAG+AGG | + | chr1.3:68925409-68925428 | None:intergenic | 35.0% | |
| TTTAACAGATTGGGGTGAAA+TGG | - | chr1.3:68925993-68926012 | MS.gene49124:intron | 35.0% | |
| ! | AACCATTTTCCTGTAGTTTC+AGG | - | chr1.3:68926082-68926101 | MS.gene49124:CDS | 35.0% |
| ! | ACCATTTTCCTGTAGTTTCA+GGG | - | chr1.3:68926083-68926102 | MS.gene49124:CDS | 35.0% |
| ! | GTTAGGTTGTATGTCTTTGA+TGG | - | chr1.3:68926571-68926590 | MS.gene49124:CDS | 35.0% |
| ! | TTAAAAGGTCTTATGCTTCG+TGG | - | chr1.3:68925905-68925924 | MS.gene49124:intron | 35.0% |
| ! | TTGGACTAGAACAACAAATG+AGG | + | chr1.3:68925056-68925075 | None:intergenic | 35.0% |
| ! | TTTCGCAATGAGTGTGATTT+TGG | - | chr1.3:68924395-68924414 | MS.gene49124:CDS | 35.0% |
| !! | CACTGGTTTGAAAAACAAAG+AGG | - | chr1.3:68926750-68926769 | MS.gene49124:intron | 35.0% |
| !! | CTAGTGGATGAAAGATTTTG+AGG | - | chr1.3:68926292-68926311 | MS.gene49124:intron | 35.0% |
| !! | GAACTTGATAGCTGTTTTCA+AGG | + | chr1.3:68925768-68925787 | None:intergenic | 35.0% |
| !! | GTCTTTTAACTCACTACAAC+AGG | - | chr1.3:68925569-68925588 | MS.gene49124:CDS | 35.0% |
| !!! | CTGCTTCATTTTTTTATGCC+AGG | - | chr1.3:68924913-68924932 | MS.gene49124:intron | 35.0% |
| AACAACACTCATGCATAGGT+TGG | - | chr1.3:68924563-68924582 | MS.gene49124:intron | 40.0% | |
| AACTACATAGGCAACTACAG+TGG | + | chr1.3:68925305-68925324 | None:intergenic | 40.0% | |
| ACCCTGAAACTACAGGAAAA+TGG | + | chr1.3:68926087-68926106 | None:intergenic | 40.0% | |
| ACGAGGTGTATCAACTACAT+AGG | + | chr1.3:68925317-68925336 | None:intergenic | 40.0% | |
| ACTACATAGGCAACTACAGT+GGG | + | chr1.3:68925304-68925323 | None:intergenic | 40.0% | |
| ATATTCACATGGTCTGCTTC+TGG | - | chr1.3:68925244-68925263 | MS.gene49124:intron | 40.0% | |
| CATAAGATCAACCAAGCTCA+AGG | + | chr1.3:68924946-68924965 | None:intergenic | 40.0% | |
| CCTGTAGTTTCAGGGTTTAT+GGG | - | chr1.3:68926091-68926110 | MS.gene49124:CDS | 40.0% | |
| GAGGTAACCTTGTCTTATAG+AGG | + | chr1.3:68925390-68925409 | None:intergenic | 40.0% | |
| GGAAAACAACACTCATGCAT+AGG | - | chr1.3:68924559-68924578 | MS.gene49124:intron | 40.0% | |
| GGTGAAATGGGAAGCAATAT+TGG | - | chr1.3:68926006-68926025 | MS.gene49124:intron | 40.0% | |
| GTGAATATCTCAATCTGACC+AGG | + | chr1.3:68925232-68925251 | None:intergenic | 40.0% | |
| GTTTATCCATGTTCTCCTTC+CGG | + | chr1.3:68926684-68926703 | None:intergenic | 40.0% | |
| GTTTGCAACCAAGTTTGATG+AGG | - | chr1.3:68924758-68924777 | MS.gene49124:intron | 40.0% | |
| TCAACTTGACTATGTTCTCG+TGG | - | chr1.3:68925201-68925220 | MS.gene49124:intron | 40.0% | |
| TCCTGTAGTTTCAGGGTTTA+TGG | - | chr1.3:68926090-68926109 | MS.gene49124:CDS | 40.0% | |
| TGATGAGGATGCTATAGATG+AGG | - | chr1.3:68926837-68926856 | MS.gene49124:CDS | 40.0% | |
| TTATGTGATGAATCTCGACC+CGG | - | chr1.3:68924617-68924636 | MS.gene49124:intron | 40.0% | |
| TTTAACTCAGAGCCTTTCTC+TGG | - | chr1.3:68926358-68926377 | MS.gene49124:intron | 40.0% | |
| ! | ATCATTGTTGTTGGAATGGC+AGG | - | chr1.3:68924344-68924363 | MS.gene49124:CDS | 40.0% |
| !! | AGAAAGTACTTGAGAGTCAC+CGG | + | chr1.3:68924010-68924029 | None:intergenic | 40.0% |
| AACTACAGTGGGAAATGTGG+AGG | + | chr1.3:68925293-68925312 | None:intergenic | 45.0% | |
| AAGTGAATAAGCGGCGAGTT+TGG | + | chr1.3:68924033-68924052 | None:intergenic | 45.0% | |
| ACAACATGAGTTTGCCTTGG+AGG | - | chr1.3:68925441-68925460 | MS.gene49124:CDS | 45.0% | |
| ACGTGAAGAGAAACAGCTGT+TGG | - | chr1.3:68926648-68926667 | MS.gene49124:intron | 45.0% | |
| AGATGAGGACGAAGATGAAG+AGG | - | chr1.3:68926852-68926871 | MS.gene49124:CDS | 45.0% | |
| AGCACAACATGAGTTTGCCT+TGG | - | chr1.3:68925438-68925457 | MS.gene49124:CDS | 45.0% | |
| AGCTGTTGGAAGAAAATCGC+CGG | - | chr1.3:68926662-68926681 | MS.gene49124:intron | 45.0% | |
| ATTCATCCAGTGCCAGAGAA+AGG | + | chr1.3:68926373-68926392 | None:intergenic | 45.0% | |
| CCCATAAACCCTGAAACTAC+AGG | + | chr1.3:68926094-68926113 | None:intergenic | 45.0% | |
| GAAAAACAAAGAGGAGGACG+AGG | - | chr1.3:68926759-68926778 | MS.gene49124:intron | 45.0% | |
| GAAGTTAGGTGAACCAGAAG+AGG | + | chr1.3:68924306-68924325 | None:intergenic | 45.0% | |
| GACATTGAAGGTTCCTCTTC+TGG | - | chr1.3:68924290-68924309 | MS.gene49124:intron | 45.0% | |
| GGATAAACTTAGGAGGGAGA+TGG | - | chr1.3:68926696-68926715 | MS.gene49124:intron | 45.0% | |
| GGATGAAGAGGATGAGGAAA+TGG | - | chr1.3:68926780-68926799 | MS.gene49124:intron | 45.0% | |
| TATGTTCTCGTGGATACTCC+TGG | - | chr1.3:68925211-68925230 | MS.gene49124:intron | 45.0% | |
| TGAGGACCTAAAACGAGTCA+CGG | + | chr1.3:68925038-68925057 | None:intergenic | 45.0% | |
| TTCCATGTATTCCTCTGCAC+TGG | + | chr1.3:68926474-68926493 | None:intergenic | 45.0% | |
| ! | GAAACTGTAGTGTTGAGCAC+TGG | - | chr1.3:68926733-68926752 | MS.gene49124:intron | 45.0% |
| !! | TATGGAAGTGTCATGACAGC+CGG | + | chr1.3:68924639-68924658 | None:intergenic | 45.0% |
| AAATCGCCGGAAGGAGAACA+TGG | - | chr1.3:68926675-68926694 | MS.gene49124:intron | 50.0% | |
| AAATTCCACCATTGGGGCCA+AGG | + | chr1.3:68924722-68924741 | None:intergenic | 50.0% | |
| AGCCAGTGCAGAGGAATACA+TGG | - | chr1.3:68926469-68926488 | MS.gene49124:intron | 50.0% | |
| AGGAGGGAGATGGAGAAATC+TGG | - | chr1.3:68926706-68926725 | MS.gene49124:intron | 50.0% | |
| AGGGAGATGGAGAAATCTGG+AGG | - | chr1.3:68926709-68926728 | MS.gene49124:intron | 50.0% | |
| CAAGCTCAAGGAAAGCTACC+TGG | + | chr1.3:68924934-68924953 | None:intergenic | 50.0% | |
| CAATTCAACCTTGGCCCCAA+TGG | - | chr1.3:68924711-68924730 | MS.gene49124:intron | 50.0% | |
| CAGGTAGCTTTCCTTGAGCT+TGG | - | chr1.3:68924932-68924951 | MS.gene49124:intron | 50.0% | |
| GATCTGAACTTGCAGCTGCT+TGG | + | chr1.3:68926322-68926341 | None:intergenic | 50.0% | |
| GCTGTGTCTGTGATGAGGTT+TGG | - | chr1.3:68925716-68925735 | MS.gene49124:intron | 50.0% | |
| GGCAACTACAGTGGGAAATG+TGG | + | chr1.3:68925296-68925315 | None:intergenic | 50.0% | |
| GTTGGAAGAAAATCGCCGGA+AGG | - | chr1.3:68926666-68926685 | MS.gene49124:intron | 50.0% | |
| TGTTGTTGGAATGGCAGGTC+AGG | - | chr1.3:68924349-68924368 | MS.gene49124:CDS | 50.0% | |
| TTTGGGCTGTGTCTGTGATG+AGG | - | chr1.3:68925711-68925730 | MS.gene49124:intron | 50.0% | |
| ! | CGGGACATACACTGATGATG+AGG | - | chr1.3:68926822-68926841 | MS.gene49124:CDS | 50.0% |
| ! | GTGGTAGGATTTTCTGCACG+AGG | + | chr1.3:68925334-68925353 | None:intergenic | 50.0% |
| !! | ATGGAAGTGTCATGACAGCC+GGG | + | chr1.3:68924638-68924657 | None:intergenic | 50.0% |
| !! | ATTTCCATGGGGGTGTCTTC+GGG | + | chr1.3:68923982-68924001 | None:intergenic | 50.0% |
| !! | CATTTCCATGGGGGTGTCTT+CGG | + | chr1.3:68923983-68924002 | None:intergenic | 50.0% |
| !! | TCACCGGCTTCCATTTCCAT+GGG | + | chr1.3:68923994-68924013 | None:intergenic | 50.0% |
| ACCCCCATGGAAATGGAAGC+CGG | - | chr1.3:68923988-68924007 | MS.gene49124:CDS | 55.0% | |
| AGAGGAGGACGAGGATGAAG+AGG | - | chr1.3:68926768-68926787 | MS.gene49124:intron | 55.0% | |
| AGCTGTTGAAGCCAGTGCAG+AGG | - | chr1.3:68926460-68926479 | MS.gene49124:intron | 55.0% | |
| CGAAGACACCCCCATGGAAA+TGG | - | chr1.3:68923981-68924000 | MS.gene49124:CDS | 55.0% | |
| GCTGGAGTTTCTGCAGTCAC+TGG | - | chr1.3:68926413-68926432 | MS.gene49124:intron | 55.0% | |
| GGACGAGGATGAAGAGGATG+AGG | - | chr1.3:68926774-68926793 | MS.gene49124:intron | 55.0% | |
| GTTTCTGCAGTCACTGGTGC+TGG | - | chr1.3:68926419-68926438 | MS.gene49124:intron | 55.0% | |
| TCAGAGCCTTTCTCTGGCAC+TGG | - | chr1.3:68926364-68926383 | MS.gene49124:intron | 55.0% | |
| TTCAACCTTGGCCCCAATGG+TGG | - | chr1.3:68924714-68924733 | MS.gene49124:intron | 55.0% | |
| ! | ACCGGCTTCCATTTCCATGG+GGG | + | chr1.3:68923992-68924011 | None:intergenic | 55.0% |
| ! | CGCTGTCCGTGACTCGTTTT+AGG | - | chr1.3:68925029-68925048 | MS.gene49124:intron | 55.0% |
| ! | GAGTAACGCTGTGTCGATCG+TGG | + | chr1.3:68924120-68924139 | None:intergenic | 55.0% |
| ! | GTCACTGGTGCTGGAATCGA+AGG | - | chr1.3:68926428-68926447 | MS.gene49124:intron | 55.0% |
| !! | CACCGGCTTCCATTTCCATG+GGG | + | chr1.3:68923993-68924012 | None:intergenic | 55.0% |
| !! | GTCACCGGCTTCCATTTCCA+TGG | + | chr1.3:68923995-68924014 | None:intergenic | 55.0% |
| !! | TTTCCATGGGGGTGTCTTCG+GGG | + | chr1.3:68923981-68924000 | None:intergenic | 55.0% |
| TAACCCCGAAGACACCCCCA+TGG | - | chr1.3:68923975-68923994 | MS.gene49124:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 68923946 | 68926894 | 68923946 | ID=MS.gene49124 |
| chr1.3 | mRNA | 68923946 | 68926894 | 68923946 | ID=MS.gene49124.t1;Parent=MS.gene49124 |
| chr1.3 | exon | 68926820 | 68926894 | 68926820 | ID=MS.gene49124.t1.exon1;Parent=MS.gene49124.t1 |
| chr1.3 | CDS | 68926820 | 68926894 | 68926820 | ID=cds.MS.gene49124.t1;Parent=MS.gene49124.t1 |
| chr1.3 | exon | 68926475 | 68926598 | 68926475 | ID=MS.gene49124.t1.exon2;Parent=MS.gene49124.t1 |
| chr1.3 | CDS | 68926475 | 68926598 | 68926475 | ID=cds.MS.gene49124.t1;Parent=MS.gene49124.t1 |
| chr1.3 | exon | 68926061 | 68926287 | 68926061 | ID=MS.gene49124.t1.exon3;Parent=MS.gene49124.t1 |
| chr1.3 | CDS | 68926061 | 68926287 | 68926061 | ID=cds.MS.gene49124.t1;Parent=MS.gene49124.t1 |
| chr1.3 | exon | 68925378 | 68925668 | 68925378 | ID=MS.gene49124.t1.exon4;Parent=MS.gene49124.t1 |
| chr1.3 | CDS | 68925378 | 68925668 | 68925378 | ID=cds.MS.gene49124.t1;Parent=MS.gene49124.t1 |
| chr1.3 | exon | 68924339 | 68924544 | 68924339 | ID=MS.gene49124.t1.exon5;Parent=MS.gene49124.t1 |
| chr1.3 | CDS | 68924339 | 68924544 | 68924339 | ID=cds.MS.gene49124.t1;Parent=MS.gene49124.t1 |
| chr1.3 | exon | 68923946 | 68924210 | 68923946 | ID=MS.gene49124.t1.exon6;Parent=MS.gene49124.t1 |
| chr1.3 | CDS | 68923946 | 68924210 | 68923946 | ID=cds.MS.gene49124.t1;Parent=MS.gene49124.t1 |
| Gene Sequence |
| Protein sequence |
