Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038520.t1 | XP_013446016.1 | 96.7 | 334 | 5 | 1 | 1 | 334 | 1 | 328 | 2.00E-182 | 648.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038520.t1 | Q8GYN9 | 76.4 | 339 | 73 | 3 | 1 | 334 | 1 | 337 | 6.7e-147 | 521.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038520.t1 | A0A072TT65 | 96.7 | 334 | 5 | 1 | 1 | 334 | 1 | 328 | 1.4e-182 | 648.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43051 | MS.gene038520 | PPI |
| MS.gene038520 | MS.gene84339 | PPI |
| MS.gene35396 | MS.gene038520 | PPI |
| MS.gene050322 | MS.gene038520 | PPI |
| MS.gene007227 | MS.gene038520 | PPI |
| MS.gene034468 | MS.gene038520 | PPI |
| MS.gene66767 | MS.gene038520 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038520.t1 | MTR_8g064990 | 96.707 | 334 | 5 | 1 | 1 | 334 | 1 | 328 | 0.0 | 667 |
| MS.gene038520.t1 | MTR_8g064990 | 98.810 | 252 | 3 | 0 | 83 | 334 | 3 | 254 | 0.0 | 520 |
| MS.gene038520.t1 | MTR_4g122220 | 35.407 | 209 | 122 | 3 | 82 | 286 | 14 | 213 | 1.16e-26 | 106 |
| MS.gene038520.t1 | MTR_8g062585 | 85.417 | 48 | 7 | 0 | 161 | 208 | 30 | 77 | 5.10e-24 | 94.0 |
| MS.gene038520.t1 | MTR_4g100350 | 27.200 | 250 | 174 | 3 | 83 | 328 | 53 | 298 | 4.38e-21 | 92.0 |
| MS.gene038520.t1 | MTR_8g062580 | 91.304 | 46 | 4 | 0 | 251 | 296 | 8 | 53 | 4.40e-21 | 90.9 |
| MS.gene038520.t1 | MTR_3g085700 | 29.181 | 281 | 172 | 10 | 67 | 330 | 2 | 272 | 5.67e-20 | 88.6 |
| MS.gene038520.t1 | MTR_2027s0010 | 29.379 | 177 | 112 | 5 | 82 | 253 | 8 | 176 | 1.98e-12 | 66.6 |
| MS.gene038520.t1 | MTR_8g010580 | 28.671 | 143 | 96 | 3 | 87 | 225 | 23 | 163 | 5.34e-11 | 63.5 |
| MS.gene038520.t1 | MTR_8g010580 | 28.671 | 143 | 96 | 3 | 87 | 225 | 23 | 163 | 7.75e-11 | 62.8 |
| MS.gene038520.t1 | MTR_8g010580 | 28.671 | 143 | 96 | 3 | 87 | 225 | 23 | 163 | 7.79e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038520.t1 | AT1G60550 | 76.401 | 339 | 73 | 3 | 1 | 334 | 1 | 337 | 0.0 | 537 |
| MS.gene038520.t1 | AT4G16210 | 34.468 | 235 | 130 | 6 | 70 | 293 | 5 | 226 | 2.73e-28 | 110 |
| MS.gene038520.t1 | AT4G16800 | 29.839 | 248 | 170 | 3 | 83 | 328 | 54 | 299 | 2.45e-26 | 106 |
| MS.gene038520.t1 | AT5G43280 | 26.642 | 274 | 177 | 10 | 75 | 330 | 11 | 278 | 4.26e-13 | 68.9 |
| MS.gene038520.t1 | AT5G65940 | 28.972 | 214 | 127 | 7 | 74 | 276 | 12 | 211 | 3.85e-11 | 63.5 |
| MS.gene038520.t1 | AT5G65940 | 28.972 | 214 | 127 | 7 | 74 | 276 | 12 | 211 | 4.96e-11 | 63.5 |
| MS.gene038520.t1 | AT5G65940 | 28.972 | 214 | 127 | 7 | 74 | 276 | 12 | 211 | 5.33e-11 | 63.5 |
| MS.gene038520.t1 | AT5G65940 | 28.972 | 214 | 127 | 7 | 74 | 276 | 12 | 211 | 5.33e-11 | 63.5 |
Find 81 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGCAATTACTGGTTT+TGG | 0.240337 | 8.4:-36778209 | None:intergenic |
| GGCTGTTGAAGCAGAGAAAA+TGG | 0.259099 | 8.4:+36778728 | MS.gene038520:CDS |
| CCTTAATGTGTTAGACTTGC+AGG | 0.280510 | 8.4:+36777641 | MS.gene038520:CDS |
| GATAGTACCATTGCAATTAC+TGG | 0.296354 | 8.4:-36778215 | None:intergenic |
| GCAGCAGATAATGCTATCTT+TGG | 0.320415 | 8.4:+36778374 | MS.gene038520:CDS |
| TTCCTTCTCATGATGTTGTT+TGG | 0.337790 | 8.4:+36776529 | MS.gene038520:CDS |
| TCAAGTTACCAACGTGTTCA+TGG | 0.366573 | 8.4:+36776501 | MS.gene038520:CDS |
| TGACGGGCACGCTGGACTTC+AGG | 0.368255 | 8.4:+36779153 | MS.gene038520:CDS |
| AATGCTATCTTTGGCCAAAC+TGG | 0.368332 | 8.4:+36778383 | MS.gene038520:CDS |
| CCTGCAAGTCTAACACATTA+AGG | 0.368951 | 8.4:-36777641 | None:intergenic |
| GCAGGGTATGCTGTTGGAGG+AGG | 0.377182 | 8.4:+36778317 | MS.gene038520:CDS |
| AAATAGCCCAACCGCAATTC+GGG | 0.383989 | 8.4:+36779102 | MS.gene038520:CDS |
| GGGAGCTTTGATGCTGGTTA+TGG | 0.384393 | 8.4:+36778542 | MS.gene038520:CDS |
| GTTTCTCACAAGGTTCTATA+CGG | 0.403885 | 8.4:+36778707 | MS.gene038520:CDS |
| GAAATAGCCCAACCGCAATT+CGG | 0.406545 | 8.4:+36779101 | MS.gene038520:CDS |
| CTAACATTAACACAGGTTGC+AGG | 0.410643 | 8.4:+36778299 | MS.gene038520:intron |
| TATTCTGATCATGAAAATAT+CGG | 0.418618 | 8.4:+36777615 | MS.gene038520:CDS |
| GAAGCACCTTAGGACCAGTT+TGG | 0.426368 | 8.4:-36778397 | None:intergenic |
| AGGAGGGCATATATTGCATA+TGG | 0.429416 | 8.4:+36778334 | MS.gene038520:CDS |
| TTATCTCAATTATAGGAAAT+GGG | 0.432886 | 8.4:+36779296 | MS.gene038520:intron |
| ATGTCTTTGTTGTTTGCCAT+TGG | 0.466222 | 8.4:-36776375 | None:intergenic |
| TTGAGAACCCGAATTGCGGT+TGG | 0.473250 | 8.4:-36779109 | None:intergenic |
| TTCTCATGATGTTGTTTGGA+AGG | 0.473507 | 8.4:+36776533 | MS.gene038520:CDS |
| CGAAAAGCATTCCTTCTCTC+AGG | 0.474072 | 8.4:-36776852 | None:intergenic |
| CTATTAATGCAGTGGATGAC+GGG | 0.487601 | 8.4:+36779137 | MS.gene038520:CDS |
| AAGTTCTATCATGTCACGTT+TGG | 0.491658 | 8.4:+36778565 | MS.gene038520:CDS |
| GCTATTAATGCAGTGGATGA+CGG | 0.498064 | 8.4:+36779136 | MS.gene038520:CDS |
| TGAGAACCCGAATTGCGGTT+GGG | 0.503855 | 8.4:-36779108 | None:intergenic |
| AAGAAACAATCAAATGGTGT+AGG | 0.506674 | 8.4:+36779068 | MS.gene038520:CDS |
| TCATGATCAGAATAACCATC+TGG | 0.512939 | 8.4:-36777606 | None:intergenic |
| TTCTGATGATGATGAAGGAA+AGG | 0.516790 | 8.4:+36776563 | MS.gene038520:CDS |
| CTTTGGCCAAACTGGTCCTA+AGG | 0.517904 | 8.4:+36778391 | MS.gene038520:CDS |
| TTGATGTTGGAGAGGAAACA+AGG | 0.525526 | 8.4:-36776437 | None:intergenic |
| CTTGGCAATTCCTTCACCAA+CGG | 0.525754 | 8.4:-36776613 | None:intergenic |
| GCTGTTGAAGCAGAGAAAAT+GGG | 0.526704 | 8.4:+36778729 | MS.gene038520:CDS |
| GTTGGTGTCATCATACTCAC+TGG | 0.534565 | 8.4:+36776933 | MS.gene038520:CDS |
| TGGAGAGGAAACAAGGTGGT+TGG | 0.539271 | 8.4:-36776430 | None:intergenic |
| AACCGCAATTCGGGTTCTCA+AGG | 0.543466 | 8.4:+36779111 | MS.gene038520:CDS |
| AGAAACAATCAAATGGTGTA+GGG | 0.550444 | 8.4:+36779069 | MS.gene038520:CDS |
| GGTGGTGGTGATATTGATGT+TGG | 0.550698 | 8.4:-36776450 | None:intergenic |
| AAGGTTGGGAGCTTTGATGC+TGG | 0.551127 | 8.4:+36778536 | MS.gene038520:intron |
| CAGGTTGCAGGGTATGCTGT+TGG | 0.551508 | 8.4:+36778311 | MS.gene038520:intron |
| CAGGGTATGCTGTTGGAGGA+GGG | 0.554607 | 8.4:+36778318 | MS.gene038520:CDS |
| GGCACTGAAGAAGCAAATGA+AGG | 0.554741 | 8.4:+36779344 | MS.gene038520:CDS |
| CATCTGGAGTCCTCAAGGCT+TGG | 0.556853 | 8.4:-36777590 | None:intergenic |
| GTTCCTTCTGATGATGATGA+AGG | 0.557968 | 8.4:+36776558 | MS.gene038520:CDS |
| GATAGCATTATCTGCTGCAA+TGG | 0.558797 | 8.4:-36778369 | None:intergenic |
| TATGAGAAATCCGTTGGTGA+AGG | 0.569437 | 8.4:+36776603 | MS.gene038520:CDS |
| TAACATTAACACAGGTTGCA+GGG | 0.569695 | 8.4:+36778300 | MS.gene038520:intron |
| GAAATAAGTTGAGGTGGTGG+TGG | 0.570920 | 8.4:-36776465 | None:intergenic |
| GTTGCAGGGTATGCTGTTGG+AGG | 0.577134 | 8.4:+36778314 | MS.gene038520:CDS |
| GCTAGAGATGATCCCTCTGT+TGG | 0.578549 | 8.4:+36776915 | MS.gene038520:CDS |
| ATAACCATCTGGAGTCCTCA+AGG | 0.585989 | 8.4:-36777595 | None:intergenic |
| TTTCCTTCATCATCATCAGA+AGG | 0.591701 | 8.4:-36776561 | None:intergenic |
| AAGGAAATAAGTTGAGGTGG+TGG | 0.591859 | 8.4:-36776468 | None:intergenic |
| GTGAAATGTGGTTTCTCACA+AGG | 0.596317 | 8.4:+36778697 | MS.gene038520:CDS |
| GGAACAGATGCGTTCTGTAG+TGG | 0.596532 | 8.4:+36777561 | MS.gene038520:CDS |
| CGTTGGTGAAGGAATTGCCA+AGG | 0.597323 | 8.4:+36776614 | MS.gene038520:CDS |
| CAAGGCAGCTATTAATGCAG+TGG | 0.600034 | 8.4:+36779129 | MS.gene038520:CDS |
| ATCAGCTCCTTAACCGTGTG+AGG | 0.604886 | 8.4:-36776876 | None:intergenic |
| TTCCAAACAACATCATGAGA+AGG | 0.606798 | 8.4:-36776531 | None:intergenic |
| TGCCTTGAGAACCCGAATTG+CGG | 0.609132 | 8.4:-36779113 | None:intergenic |
| GCAGTGGATGACGGGCACGC+TGG | 0.611049 | 8.4:+36779145 | MS.gene038520:CDS |
| TGTCATCATACTCACTGGAA+AGG | 0.619405 | 8.4:+36776938 | MS.gene038520:CDS |
| TCTCAATTATAGGAAATGGG+TGG | 0.622080 | 8.4:+36779299 | MS.gene038520:intron |
| CACAAGGAAATAAGTTGAGG+TGG | 0.624126 | 8.4:-36776471 | None:intergenic |
| CAAGCCTTGAGGACTCCAGA+TGG | 0.630119 | 8.4:+36777591 | MS.gene038520:CDS |
| TCCAAAACCAGTAATTGCAA+TGG | 0.632257 | 8.4:+36778208 | MS.gene038520:CDS |
| CTGGTACAACAGTATTGACA+AGG | 0.640173 | 8.4:-36778752 | None:intergenic |
| GTATTAATAGGCCTGAGAGA+AGG | 0.646223 | 8.4:+36776841 | MS.gene038520:CDS |
| TGACACAAGGAAATAAGTTG+AGG | 0.649038 | 8.4:-36776474 | None:intergenic |
| ATTGTCTATGAGAAATCCGT+TGG | 0.649414 | 8.4:+36776597 | MS.gene038520:CDS |
| AGTATGATGACACCAACAGA+GGG | 0.655817 | 8.4:-36776927 | None:intergenic |
| ACAGATGCGTTCTGTAGTGG+TGG | 0.672100 | 8.4:+36777564 | MS.gene038520:CDS |
| TGGTGATATTGATGTTGGAG+AGG | 0.678621 | 8.4:-36776445 | None:intergenic |
| GCGTCTTCGCTCCATATATG+CGG | 0.682881 | 8.4:-36779372 | None:intergenic |
| GTAACTTGAAGTGTGACACA+AGG | 0.684211 | 8.4:-36776487 | None:intergenic |
| GAGTATGATGACACCAACAG+AGG | 0.689344 | 8.4:-36776928 | None:intergenic |
| GAACATCACCATGAACACGT+TGG | 0.725959 | 8.4:-36776509 | None:intergenic |
| ATGTTGGAGAGGAAACAAGG+TGG | 0.769684 | 8.4:-36776434 | None:intergenic |
| GTGGTGGTGACCAAGCCTTG+AGG | 0.785466 | 8.4:+36777580 | MS.gene038520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAAATAACTTCAAATA+TGG | - | chr8.4:36776749-36776768 | None:intergenic | 10.0% |
| !!! | ATATATTGTCTTTAAAATTA+TGG | + | chr8.4:36777920-36777939 | MS.gene038520:intron | 10.0% |
| !! | TACAAATGTTAAAATGAAAA+TGG | - | chr8.4:36778432-36778451 | None:intergenic | 15.0% |
| !! | TATTAAACTTAGAAAAATCT+GGG | - | chr8.4:36779397-36779416 | None:intergenic | 15.0% |
| !! | TTACAAAACAATAAAGTAAA+TGG | - | chr8.4:36776983-36777002 | None:intergenic | 15.0% |
| !!! | AATTCAACATTGATATTTTA+TGG | + | chr8.4:36779323-36779342 | MS.gene038520:CDS | 15.0% |
| !! | CTATTAAACTTAGAAAAATC+TGG | - | chr8.4:36779398-36779417 | None:intergenic | 20.0% |
| !! | TAGAAAAAGAAACAATCAAA+TGG | + | chr8.4:36779062-36779081 | MS.gene038520:CDS | 20.0% |
| !! | TATTCTGATCATGAAAATAT+CGG | + | chr8.4:36777615-36777634 | MS.gene038520:CDS | 20.0% |
| !! | TTATCTCAATTATAGGAAAT+GGG | + | chr8.4:36779296-36779315 | MS.gene038520:intron | 20.0% |
| !! | TTTATCTCAATTATAGGAAA+TGG | + | chr8.4:36779295-36779314 | MS.gene038520:intron | 20.0% |
| !!! | AAGCACATTTTTTTATCTTT+TGG | - | chr8.4:36778648-36778667 | None:intergenic | 20.0% |
| !!! | AATGATATATTGATGATGTA+GGG | + | chr8.4:36777540-36777559 | MS.gene038520:intron | 20.0% |
| !!! | ACAATATATCAGTTTTTCAT+TGG | - | chr8.4:36777909-36777928 | None:intergenic | 20.0% |
| !!! | ATTTTTCTCATTACAAATCA+TGG | - | chr8.4:36778090-36778109 | None:intergenic | 20.0% |
| !!! | CATTATTGAATTTGTTTTAG+TGG | + | chr8.4:36779181-36779200 | MS.gene038520:intron | 20.0% |
| !!! | GTTAATGCAATATTTTGATT+TGG | + | chr8.4:36779024-36779043 | MS.gene038520:intron | 20.0% |
| !!! | GTTGTTTTTATCTCAATTAT+AGG | + | chr8.4:36779289-36779308 | MS.gene038520:intron | 20.0% |
| !!! | TAATGATATATTGATGATGT+AGG | + | chr8.4:36777539-36777558 | MS.gene038520:intron | 20.0% |
| !!! | TAATTTTAGTTTCTCGTTTA+AGG | + | chr8.4:36778810-36778829 | MS.gene038520:intron | 20.0% |
| !!! | TTTTGCAGATTAGTATTAAT+AGG | + | chr8.4:36776829-36776848 | MS.gene038520:intron | 20.0% |
| ! | AAAGAGATAACTTGAGTAAT+GGG | - | chr8.4:36777717-36777736 | None:intergenic | 25.0% |
| ! | AAGCAAAAAGAAAATGAGAA+AGG | - | chr8.4:36776651-36776670 | None:intergenic | 25.0% |
| ! | AATTTGAGGACTAAATTAAC+CGG | - | chr8.4:36777848-36777867 | None:intergenic | 25.0% |
| ! | ATAATGATTGGATTAACAAG+TGG | - | chr8.4:36777050-36777069 | None:intergenic | 25.0% |
| ! | GAGACTGTTTGTATAATTTA+GGG | + | chr8.4:36776782-36776801 | MS.gene038520:intron | 25.0% |
| ! | TCAAATATGGCAATTCAAAA+TGG | - | chr8.4:36776736-36776755 | None:intergenic | 25.0% |
| ! | TCTACTAAATTAGAGAACAT+CGG | - | chr8.4:36777975-36777994 | None:intergenic | 25.0% |
| ! | TGAGACTGTTTGTATAATTT+AGG | + | chr8.4:36776781-36776800 | MS.gene038520:intron | 25.0% |
| ! | TGCTGATAAAATAAAACCAA+TGG | - | chr8.4:36777163-36777182 | None:intergenic | 25.0% |
| ! | TTCACACAAATAGAAAAATC+TGG | - | chr8.4:36777683-36777702 | None:intergenic | 25.0% |
| ! | TTCATTATCATTGTATTGCA+TGG | + | chr8.4:36778942-36778961 | MS.gene038520:intron | 25.0% |
| !! | ACTAGTTGTATGATAATGAT+TGG | - | chr8.4:36777062-36777081 | None:intergenic | 25.0% |
| !! | TTATTTGCTAACATTAACAC+AGG | + | chr8.4:36778292-36778311 | MS.gene038520:intron | 25.0% |
| !!! | ATTGTTATTTCTCCAATTTG+AGG | + | chr8.4:36777999-36778018 | MS.gene038520:intron | 25.0% |
| !!! | TATCTCTTTGGTTATTTTTG+AGG | + | chr8.4:36777728-36777747 | MS.gene038520:intron | 25.0% |
| !!! | TTGTTATTTCTCCAATTTGA+GGG | + | chr8.4:36778000-36778019 | MS.gene038520:intron | 25.0% |
| AAAAATGTGCTTCTCAATAC+AGG | + | chr8.4:36778656-36778675 | MS.gene038520:intron | 30.0% | |
| AAAATTATGGTGCTTGATTC+TGG | + | chr8.4:36777933-36777952 | MS.gene038520:intron | 30.0% | |
| AACCATTCAATTCTGCATTA+AGG | - | chr8.4:36777518-36777537 | None:intergenic | 30.0% | |
| AAGAAACAATCAAATGGTGT+AGG | + | chr8.4:36779068-36779087 | MS.gene038520:CDS | 30.0% | |
| ACGAGAAACTAAAATTACAG+TGG | - | chr8.4:36778807-36778826 | None:intergenic | 30.0% | |
| AGAAACAATCAAATGGTGTA+GGG | + | chr8.4:36779069-36779088 | MS.gene038520:CDS | 30.0% | |
| AGATGTTACAAAAGACGAAA+AGG | - | chr8.4:36778500-36778519 | None:intergenic | 30.0% | |
| ATATGCATACATATGCTCTA+AGG | - | chr8.4:36779264-36779283 | None:intergenic | 30.0% | |
| ATCATATGATGCTTTCAGTA+CGG | + | chr8.4:36777265-36777284 | MS.gene038520:intron | 30.0% | |
| ATCCTTAATGCAGAATTGAA+TGG | + | chr8.4:36777513-36777532 | MS.gene038520:intron | 30.0% | |
| ATGTTACAAAAGACGAAAAG+GGG | - | chr8.4:36778498-36778517 | None:intergenic | 30.0% | |
| CAAAAAGAAAATGAGAAAGG+TGG | - | chr8.4:36776648-36776667 | None:intergenic | 30.0% | |
| CAAAGAGATAACTTGAGTAA+TGG | - | chr8.4:36777718-36777737 | None:intergenic | 30.0% | |
| CATTACTCAAGTTATCTCTT+TGG | + | chr8.4:36777716-36777735 | MS.gene038520:intron | 30.0% | |
| GATGTTACAAAAGACGAAAA+GGG | - | chr8.4:36778499-36778518 | None:intergenic | 30.0% | |
| TAAGTCACATGACAAGTTAA+TGG | - | chr8.4:36777088-36777107 | None:intergenic | 30.0% | |
| TATGCATACATATGCTCTAA+GGG | - | chr8.4:36779263-36779282 | None:intergenic | 30.0% | |
| TCATGAAATGATCAACTTGA+TGG | + | chr8.4:36777219-36777238 | MS.gene038520:intron | 30.0% | |
| TTCTCAAACAACAATGATAC+TGG | - | chr8.4:36777790-36777809 | None:intergenic | 30.0% | |
| ! | ATTGGTTTCAACTGATGTTA+GGG | - | chr8.4:36777891-36777910 | None:intergenic | 30.0% |
| ! | GTCTAAGTTGAAGAAATGTT+GGG | + | chr8.4:36776804-36776823 | MS.gene038520:intron | 30.0% |
| ! | GTTTTCAAAACCAAACCATA+CGG | + | chr8.4:36777300-36777319 | MS.gene038520:intron | 30.0% |
| ! | TCTTGTCTTTGTATCGATAA+AGG | + | chr8.4:36778517-36778536 | MS.gene038520:intron | 30.0% |
| ! | TCTTTGTATCGATAAAGGTT+GGG | + | chr8.4:36778522-36778541 | MS.gene038520:intron | 30.0% |
| ! | TTCTCGTTTAAGGTTATGTT+TGG | + | chr8.4:36778820-36778839 | MS.gene038520:intron | 30.0% |
| !! | TTATTTTATAGGGCATGTTG+AGG | + | chr8.4:36777006-36777025 | MS.gene038520:intron | 30.0% |
| !! | TTGTTTTGTTCAAGTGACTT+TGG | + | chr8.4:36777132-36777151 | MS.gene038520:intron | 30.0% |
| AAGAAAATGAGAAAGGTGGA+AGG | - | chr8.4:36776644-36776663 | None:intergenic | 35.0% | |
| AAGTTCTATCATGTCACGTT+TGG | + | chr8.4:36778565-36778584 | MS.gene038520:CDS | 35.0% | |
| ACTATTACTCTCTCTTAGCT+AGG | + | chr8.4:36776709-36776728 | MS.gene038520:intron | 35.0% | |
| AGTGACTTTGGATATTCCAT+TGG | + | chr8.4:36777144-36777163 | MS.gene038520:intron | 35.0% | |
| ATGAATGGAAAGAAGCTTAC+TGG | - | chr8.4:36778774-36778793 | None:intergenic | 35.0% | |
| ATTGTCTATGAGAAATCCGT+TGG | + | chr8.4:36776597-36776616 | MS.gene038520:CDS | 35.0% | |
| GATAGTACCATTGCAATTAC+TGG | - | chr8.4:36778218-36778237 | None:intergenic | 35.0% | |
| GTCTTAAGTGACAAACTACA+TGG | - | chr8.4:36777486-36777505 | None:intergenic | 35.0% | |
| GTGCACAAAAAAGTGAGATT+TGG | - | chr8.4:36778251-36778270 | None:intergenic | 35.0% | |
| GTTTCTCACAAGGTTCTATA+CGG | + | chr8.4:36778707-36778726 | MS.gene038520:CDS | 35.0% | |
| TAACATTAACACAGGTTGCA+GGG | + | chr8.4:36778300-36778319 | MS.gene038520:intron | 35.0% | |
| TAGTCCTCAAATTCACGAAA+TGG | + | chr8.4:36777855-36777874 | MS.gene038520:intron | 35.0% | |
| TCATGATCAGAATAACCATC+TGG | - | chr8.4:36777609-36777628 | None:intergenic | 35.0% | |
| TCCAAAACCAGTAATTGCAA+TGG | + | chr8.4:36778208-36778227 | MS.gene038520:CDS | 35.0% | |
| TCTCAATTATAGGAAATGGG+TGG | + | chr8.4:36779299-36779318 | MS.gene038520:intron | 35.0% | |
| TGAAGGAAAAACCGCATATA+TGG | + | chr8.4:36779361-36779380 | MS.gene038520:CDS | 35.0% | |
| TGACACAAGGAAATAAGTTG+AGG | - | chr8.4:36776477-36776496 | None:intergenic | 35.0% | |
| TTCCAAACAACATCATGAGA+AGG | - | chr8.4:36776534-36776553 | None:intergenic | 35.0% | |
| TTCCTTCTCATGATGTTGTT+TGG | + | chr8.4:36776529-36776548 | MS.gene038520:CDS | 35.0% | |
| TTGGTTTCAACTGATGTTAG+GGG | - | chr8.4:36777890-36777909 | None:intergenic | 35.0% | |
| TTGTCCGTCAAATTGTGTAA+GGG | + | chr8.4:36777822-36777841 | MS.gene038520:intron | 35.0% | |
| TTTCATGACAAGTGACAACA+TGG | - | chr8.4:36777207-36777226 | None:intergenic | 35.0% | |
| TTTCCTTCATCATCATCAGA+AGG | - | chr8.4:36776564-36776583 | None:intergenic | 35.0% | |
| TTTGTCCGTCAAATTGTGTA+AGG | + | chr8.4:36777821-36777840 | MS.gene038520:intron | 35.0% | |
| ! | AAATAATTTGCAGCTGCTGA+AGG | - | chr8.4:36778278-36778297 | None:intergenic | 35.0% |
| ! | ATTGCCATTTCGTGAATTTG+AGG | - | chr8.4:36777862-36777881 | None:intergenic | 35.0% |
| ! | CTAAAAAAGCACGTGAAATG+TGG | + | chr8.4:36778685-36778704 | MS.gene038520:CDS | 35.0% |
| ! | GCAAATTATTGAAGCACCTT+AGG | - | chr8.4:36778410-36778429 | None:intergenic | 35.0% |
| ! | GGTCTAAGTTGAAGAAATGT+TGG | + | chr8.4:36776803-36776822 | MS.gene038520:intron | 35.0% |
| ! | GTCTTTGTATCGATAAAGGT+TGG | + | chr8.4:36778521-36778540 | MS.gene038520:intron | 35.0% |
| ! | TCATTCTTTTCTCCTATTGC+AGG | + | chr8.4:36778169-36778188 | MS.gene038520:intron | 35.0% |
| ! | TTCTCATGATGTTGTTTGGA+AGG | + | chr8.4:36776533-36776552 | MS.gene038520:CDS | 35.0% |
| ! | TTCTGATGATGATGAAGGAA+AGG | + | chr8.4:36776563-36776582 | MS.gene038520:CDS | 35.0% |
| !! | CATTGGTTTCAACTGATGTT+AGG | - | chr8.4:36777892-36777911 | None:intergenic | 35.0% |
| !!! | ACCATTGCAATTACTGGTTT+TGG | - | chr8.4:36778212-36778231 | None:intergenic | 35.0% |
| !!! | CACATTTCACGTGCTTTTTT+AGG | - | chr8.4:36778687-36778706 | None:intergenic | 35.0% |
| !!! | TTGCAATTACTGGTTTTGGA+AGG | - | chr8.4:36778208-36778227 | None:intergenic | 35.0% |
| !!! | TTTTGAGGCATTCGTTTCAA+TGG | + | chr8.4:36777743-36777762 | MS.gene038520:intron | 35.0% |
| AATGCTATCTTTGGCCAAAC+TGG | + | chr8.4:36778383-36778402 | MS.gene038520:CDS | 40.0% | |
| AGTATGATGACACCAACAGA+GGG | - | chr8.4:36776930-36776949 | None:intergenic | 40.0% | |
| AGTGGTGAGTGTTCTATGAA+TGG | - | chr8.4:36778789-36778808 | None:intergenic | 40.0% | |
| ATGTGCTTCTCAATACAGGT+AGG | + | chr8.4:36778660-36778679 | MS.gene038520:intron | 40.0% | |
| CCTGCAAGTCTAACACATTA+AGG | - | chr8.4:36777644-36777663 | None:intergenic | 40.0% | |
| CCTTAATGTGTTAGACTTGC+AGG | + | chr8.4:36777641-36777660 | MS.gene038520:CDS | 40.0% | |
| CCTTGAACTAGACTTTACTG+CGG | + | chr8.4:36777337-36777356 | MS.gene038520:intron | 40.0% | |
| CTAACATTAACACAGGTTGC+AGG | + | chr8.4:36778299-36778318 | MS.gene038520:intron | 40.0% | |
| CTATTAATGCAGTGGATGAC+GGG | + | chr8.4:36779137-36779156 | MS.gene038520:CDS | 40.0% | |
| GATAGCATTATCTGCTGCAA+TGG | - | chr8.4:36778372-36778391 | None:intergenic | 40.0% | |
| GCAGCAGATAATGCTATCTT+TGG | + | chr8.4:36778374-36778393 | MS.gene038520:CDS | 40.0% | |
| GCTATTAATGCAGTGGATGA+CGG | + | chr8.4:36779136-36779155 | MS.gene038520:CDS | 40.0% | |
| GCTGTTGAAGCAGAGAAAAT+GGG | + | chr8.4:36778729-36778748 | MS.gene038520:CDS | 40.0% | |
| GGATTTGAACTGCTTGAACT+TGG | - | chr8.4:36777380-36777399 | None:intergenic | 40.0% | |
| GGCAATTTAGTCCCTCAAAT+TGG | - | chr8.4:36778014-36778033 | None:intergenic | 40.0% | |
| GTAAATGGCAGTAGCAGAAA+AGG | - | chr8.4:36776968-36776987 | None:intergenic | 40.0% | |
| GTAACTTGAAGTGTGACACA+AGG | - | chr8.4:36776490-36776509 | None:intergenic | 40.0% | |
| GTATTAATAGGCCTGAGAGA+AGG | + | chr8.4:36776841-36776860 | MS.gene038520:CDS | 40.0% | |
| GTCTCAAGCTGCAATTTGTA+AGG | - | chr8.4:36778857-36778876 | None:intergenic | 40.0% | |
| GTGAAATGTGGTTTCTCACA+AGG | + | chr8.4:36778697-36778716 | MS.gene038520:CDS | 40.0% | |
| TACAAAAGACGAAAAGGGGA+TGG | - | chr8.4:36778494-36778513 | None:intergenic | 40.0% | |
| TCAAGTTACCAACGTGTTCA+TGG | + | chr8.4:36776501-36776520 | MS.gene038520:CDS | 40.0% | |
| TGGTGATATTGATGTTGGAG+AGG | - | chr8.4:36776448-36776467 | None:intergenic | 40.0% | |
| TGTCATCATACTCACTGGAA+AGG | + | chr8.4:36776938-36776957 | MS.gene038520:CDS | 40.0% | |
| TTGATGTTGGAGAGGAAACA+AGG | - | chr8.4:36776440-36776459 | None:intergenic | 40.0% | |
| ! | AAGGAAATAAGTTGAGGTGG+TGG | - | chr8.4:36776471-36776490 | None:intergenic | 40.0% |
| ! | AGGAGGGCATATATTGCATA+TGG | + | chr8.4:36778334-36778353 | MS.gene038520:CDS | 40.0% |
| ! | AGTCTAGTTCAAGGTTCAAC+CGG | - | chr8.4:36777331-36777350 | None:intergenic | 40.0% |
| ! | CACAAGGAAATAAGTTGAGG+TGG | - | chr8.4:36776474-36776493 | None:intergenic | 40.0% |
| ! | GTTCCTTCTGATGATGATGA+AGG | + | chr8.4:36776558-36776577 | MS.gene038520:CDS | 40.0% |
| ! | TATGAGAAATCCGTTGGTGA+AGG | + | chr8.4:36776603-36776622 | MS.gene038520:CDS | 40.0% |
| !! | CATACATATGCTCTAAGGGA+AGG | - | chr8.4:36779259-36779278 | None:intergenic | 40.0% |
| !! | CCTTTGACTTGAGACTTGTT+GGG | - | chr8.4:36778035-36778054 | None:intergenic | 40.0% |
| !! | CTGGTACAACAGTATTGACA+AGG | - | chr8.4:36778755-36778774 | None:intergenic | 40.0% |
| !! | TCCTTTGACTTGAGACTTGT+TGG | - | chr8.4:36778036-36778055 | None:intergenic | 40.0% |
| !!! | CAATTACTGGTTTTGGAAGG+CGG | - | chr8.4:36778205-36778224 | None:intergenic | 40.0% |
| AAATAGCCCAACCGCAATTC+GGG | + | chr8.4:36779102-36779121 | MS.gene038520:CDS | 45.0% | |
| ACCAAACCATACGGTTCAAC+CGG | + | chr8.4:36777309-36777328 | MS.gene038520:intron | 45.0% | |
| ATGTTGGAGAGGAAACAAGG+TGG | - | chr8.4:36776437-36776456 | None:intergenic | 45.0% | |
| CAAGGCAGCTATTAATGCAG+TGG | + | chr8.4:36779129-36779148 | MS.gene038520:CDS | 45.0% | |
| CCCAACAAGTCTCAAGTCAA+AGG | + | chr8.4:36778032-36778051 | MS.gene038520:intron | 45.0% | |
| CTTGGCAATTCCTTCACCAA+CGG | - | chr8.4:36776616-36776635 | None:intergenic | 45.0% | |
| GAAATAGCCCAACCGCAATT+CGG | + | chr8.4:36779101-36779120 | MS.gene038520:CDS | 45.0% | |
| GAACATCACCATGAACACGT+TGG | - | chr8.4:36776512-36776531 | None:intergenic | 45.0% | |
| GAGTATGATGACACCAACAG+AGG | - | chr8.4:36776931-36776950 | None:intergenic | 45.0% | |
| GCTTGAACTTGGACGAAACT+GGG | - | chr8.4:36777369-36777388 | None:intergenic | 45.0% | |
| GGCTGTTGAAGCAGAGAAAA+TGG | + | chr8.4:36778728-36778747 | MS.gene038520:CDS | 45.0% | |
| TGCTTGAACTTGGACGAAAC+TGG | - | chr8.4:36777370-36777389 | None:intergenic | 45.0% | |
| ! | ATAACCATCTGGAGTCCTCA+AGG | - | chr8.4:36777598-36777617 | None:intergenic | 45.0% |
| ! | CCGCAGTAAAGTCTAGTTCA+AGG | - | chr8.4:36777340-36777359 | None:intergenic | 45.0% |
| ! | CTATCATGTCACGTTTGGTG+AGG | + | chr8.4:36778570-36778589 | MS.gene038520:intron | 45.0% |
| ! | GAAATAAGTTGAGGTGGTGG+TGG | - | chr8.4:36776468-36776487 | None:intergenic | 45.0% |
| ! | GAATGCTTTTCGACCTCACA+CGG | + | chr8.4:36776863-36776882 | MS.gene038520:CDS | 45.0% |
| ! | GGCACTGAAGAAGCAAATGA+AGG | + | chr8.4:36779344-36779363 | MS.gene038520:CDS | 45.0% |
| ! | GGTGGTGGTGATATTGATGT+TGG | - | chr8.4:36776453-36776472 | None:intergenic | 45.0% |
| ! | TTTTCGACCTCACACGGTTA+AGG | + | chr8.4:36776869-36776888 | MS.gene038520:CDS | 45.0% |
| !! | CGAAAAGCATTCCTTCTCTC+AGG | - | chr8.4:36776855-36776874 | None:intergenic | 45.0% |
| !! | GTTGGTGTCATCATACTCAC+TGG | + | chr8.4:36776933-36776952 | MS.gene038520:CDS | 45.0% |
| !!! | TTTGTAAAATTTATTTTATA+GGG | + | chr8.4:36776996-36777015 | MS.gene038520:intron | 5.0% |
| !!! | TTTTGTAAAATTTATTTTAT+AGG | + | chr8.4:36776995-36777014 | MS.gene038520:intron | 5.0% |
| AATCCGTTGACGTGACTCAG+AGG | + | chr8.4:36777395-36777414 | MS.gene038520:intron | 50.0% | |
| ACAGATGCGTTCTGTAGTGG+TGG | + | chr8.4:36777564-36777583 | MS.gene038520:CDS | 50.0% | |
| ACCGGTTGAACCGTATGGTT+TGG | - | chr8.4:36777313-36777332 | None:intergenic | 50.0% | |
| AGACCTCTGAGTCACGTCAA+CGG | - | chr8.4:36777401-36777420 | None:intergenic | 50.0% | |
| ATCAGCTCCTTAACCGTGTG+AGG | - | chr8.4:36776879-36776898 | None:intergenic | 50.0% | |
| CCGGCCCTTACACAATTTGA+CGG | - | chr8.4:36777829-36777848 | None:intergenic | 50.0% | |
| CCGTCAAATTGTGTAAGGGC+CGG | + | chr8.4:36777826-36777845 | MS.gene038520:intron | 50.0% | |
| CTTTGGCCAAACTGGTCCTA+AGG | + | chr8.4:36778391-36778410 | MS.gene038520:CDS | 50.0% | |
| GAAAGGTGGAAGGACAACCT+TGG | - | chr8.4:36776634-36776653 | None:intergenic | 50.0% | |
| GCGTCTTCGCTCCATATATG+CGG | - | chr8.4:36779375-36779394 | None:intergenic | 50.0% | |
| GCTAGAGATGATCCCTCTGT+TGG | + | chr8.4:36776915-36776934 | MS.gene038520:CDS | 50.0% | |
| GGAACAGATGCGTTCTGTAG+TGG | + | chr8.4:36777561-36777580 | MS.gene038520:CDS | 50.0% | |
| GGGCATGTTGAGGCAAGAAA+TGG | + | chr8.4:36777016-36777035 | MS.gene038520:intron | 50.0% | |
| GTTCAACCGGTTGAACCGTA+TGG | - | chr8.4:36777318-36777337 | None:intergenic | 50.0% | |
| TGAGAACCCGAATTGCGGTT+GGG | - | chr8.4:36779111-36779130 | None:intergenic | 50.0% | |
| TGCCTTGAGAACCCGAATTG+CGG | - | chr8.4:36779116-36779135 | None:intergenic | 50.0% | |
| TGGAGAGGAAACAAGGTGGT+TGG | - | chr8.4:36776433-36776452 | None:intergenic | 50.0% | |
| TTGAGAACCCGAATTGCGGT+TGG | - | chr8.4:36779112-36779131 | None:intergenic | 50.0% | |
| ! | AACCGCAATTCGGGTTCTCA+AGG | + | chr8.4:36779111-36779130 | MS.gene038520:CDS | 50.0% |
| ! | AAGGTTGGGAGCTTTGATGC+TGG | + | chr8.4:36778536-36778555 | MS.gene038520:intron | 50.0% |
| ! | CGTTGGTGAAGGAATTGCCA+AGG | + | chr8.4:36776614-36776633 | MS.gene038520:CDS | 50.0% |
| ! | GAAGCACCTTAGGACCAGTT+TGG | - | chr8.4:36778400-36778419 | None:intergenic | 50.0% |
| ! | GGGAGCTTTGATGCTGGTTA+TGG | + | chr8.4:36778542-36778561 | MS.gene038520:CDS | 50.0% |
| CAAGCCTTGAGGACTCCAGA+TGG | + | chr8.4:36777591-36777610 | MS.gene038520:CDS | 55.0% | |
| CAGGGTATGCTGTTGGAGGA+GGG | + | chr8.4:36778318-36778337 | MS.gene038520:CDS | 55.0% | |
| CAGGTTGCAGGGTATGCTGT+TGG | + | chr8.4:36778311-36778330 | MS.gene038520:intron | 55.0% | |
| GGCGAATCTGCACCTGCAAT+AGG | - | chr8.4:36778184-36778203 | None:intergenic | 55.0% | |
| GTTGCAGGGTATGCTGTTGG+AGG | + | chr8.4:36778314-36778333 | MS.gene038520:CDS | 55.0% | |
| ! | CATCTGGAGTCCTCAAGGCT+TGG | - | chr8.4:36777593-36777612 | None:intergenic | 55.0% |
| GCAGGGTATGCTGTTGGAGG+AGG | + | chr8.4:36778317-36778336 | MS.gene038520:CDS | 60.0% | |
| ! | GTGGTGGTGACCAAGCCTTG+AGG | + | chr8.4:36777580-36777599 | MS.gene038520:CDS | 60.0% |
| ! | TGACGGGCACGCTGGACTTC+AGG | + | chr8.4:36779153-36779172 | MS.gene038520:CDS | 65.0% |
| !! | GCAGTGGATGACGGGCACGC+TGG | + | chr8.4:36779145-36779164 | MS.gene038520:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 36776378 | 36779427 | 36776378 | ID=MS.gene038520 |
| chr8.4 | mRNA | 36776378 | 36779427 | 36776378 | ID=MS.gene038520.t1;Parent=MS.gene038520 |
| chr8.4 | exon | 36776378 | 36776635 | 36776378 | ID=MS.gene038520.t1.exon1;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36776378 | 36776635 | 36776378 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36776837 | 36776959 | 36776837 | ID=MS.gene038520.t1.exon2;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36776837 | 36776959 | 36776837 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36777561 | 36777662 | 36777561 | ID=MS.gene038520.t1.exon3;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36777561 | 36777662 | 36777561 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36778191 | 36778229 | 36778191 | ID=MS.gene038520.t1.exon4;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36778191 | 36778229 | 36778191 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36778314 | 36778412 | 36778314 | ID=MS.gene038520.t1.exon5;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36778314 | 36778412 | 36778314 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36778539 | 36778586 | 36778539 | ID=MS.gene038520.t1.exon6;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36778539 | 36778586 | 36778539 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36778678 | 36778773 | 36778678 | ID=MS.gene038520.t1.exon7;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36778678 | 36778773 | 36778678 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36779052 | 36779174 | 36779052 | ID=MS.gene038520.t1.exon8;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36779052 | 36779174 | 36779052 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| chr8.4 | exon | 36779311 | 36779427 | 36779311 | ID=MS.gene038520.t1.exon9;Parent=MS.gene038520.t1 |
| chr8.4 | CDS | 36779311 | 36779427 | 36779311 | ID=cds.MS.gene038520.t1;Parent=MS.gene038520.t1 |
| Gene Sequence |
| Protein sequence |
