AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040154

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040154.t1 MTR_8g106740 96.169 261 6 1 1 257 1 261 0.0 512
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040154.t1 AT3G18165 63.673 245 86 2 8 249 2 246 3.53e-114 328

Find 58 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTATTACCTGAAAAT+TGG 0.178579 4.4:-634336 None:intergenic
AATATACAGAATGGAAAATT+TGG 0.215246 4.4:+634696 MS.gene040154:intron
TTGGAGTTGTTGGTTAAATA+TGG 0.222898 4.4:+634715 MS.gene040154:CDS
AACCACCACCTGTTAATAAA+TGG 0.267827 4.4:+634511 MS.gene040154:CDS
TTGGATGCTATCACTGAAAA+TGG 0.288576 4.4:+636661 MS.gene040154:CDS
TCATCGTTCCATTTATTAAC+AGG 0.301941 4.4:-634519 None:intergenic
AATGGAAAATTTGGAGTTGT+TGG 0.333732 4.4:+634705 MS.gene040154:CDS
CCTGATGATATTTCCTTTCA+CGG 0.355650 4.4:-636317 None:intergenic
AAATGGCCAACTGGCAAATT+CGG 0.358938 4.4:+636678 MS.gene040154:CDS
TTGTGCTGTTTCCATGCATC+AGG 0.378418 4.4:-634739 None:intergenic
GGCCTCCTGTTTCTCTTGAT+AGG 0.382975 4.4:+634472 MS.gene040154:CDS
TGGTGGTTCTAATTCATATC+TGG 0.391099 4.4:-634496 None:intergenic
CTTCAGGATTATCCAATGAT+TGG 0.394401 4.4:+634420 MS.gene040154:intron
CTGTAATCGTCGTCGATGTA+AGG 0.408083 4.4:-634206 None:intergenic
AGGCAATGCATCGATGATTT+CGG 0.412030 4.4:-634186 None:intergenic
CTGGACCTATCAAGAGAAAC+AGG 0.424750 4.4:-634477 None:intergenic
TCTTTCCAGAGGCTGGAACT+TGG 0.442445 4.4:+636642 MS.gene040154:intron
CTTGAAGCTCCACCTTCTTA+CGG 0.442648 4.4:+634143 MS.gene040154:CDS
TCGACTTCGATCTTAACCCT+TGG 0.460976 4.4:-634233 None:intergenic
CGACTTCGATCTTAACCCTT+GGG 0.465911 4.4:-634232 None:intergenic
CAGAATGCAGAAATTAGCTC+AGG 0.472152 4.4:+636266 MS.gene040154:intron
TTCCATTTATTAACAGGTGG+TGG 0.485498 4.4:-634513 None:intergenic
TCATACTCTCTACCAATCAT+TGG 0.493778 4.4:-634432 None:intergenic
TTCTTCAATATCAAACCATC+AGG 0.495320 4.4:+634580 MS.gene040154:CDS
TATCACTGAAAATGGCCAAC+TGG 0.495702 4.4:+636669 MS.gene040154:CDS
CCGTGAAAGGAAATATCATC+AGG 0.513849 4.4:+636317 MS.gene040154:CDS
GAAGAGGTGGAAAATCTTTG+AGG 0.518940 4.4:-634307 None:intergenic
GGAAGAAGCAGCAGCAGTAA+CGG 0.525910 4.4:+634107 MS.gene040154:CDS
GAGTATGAGCGTGTAAGAGC+TGG 0.533871 4.4:+634447 MS.gene040154:CDS
AATGGAACGATGAAACTGCT+TGG 0.535567 4.4:+634529 MS.gene040154:CDS
TGCATCGATGATTTCGGCGT+CGG 0.537750 4.4:-634180 None:intergenic
CGATGATTTCGGCGTCGGAA+TGG 0.540962 4.4:-634175 None:intergenic
TTAAATATGGCCCTGATGCA+TGG 0.542409 4.4:+634728 MS.gene040154:CDS
TGAAAATTGGAAGAGGGAAG+AGG 0.551095 4.4:-634323 None:intergenic
ACAGAGCTCATTCCATTGCA+TGG 0.563696 4.4:-636465 None:intergenic
TATTACCTGAAAATTGGAAG+AGG 0.565356 4.4:-634330 None:intergenic
ATGATTCCGAATTTGCCAGT+TGG 0.571957 4.4:-636684 None:intergenic
TGAGAAGAGAAGCAGCAGAA+AGG 0.572177 4.4:+636546 MS.gene040154:CDS
ATTACCTGAAAATTGGAAGA+GGG 0.574966 4.4:-634329 None:intergenic
ACGAAAGGGTAAATCATGAT+GGG 0.575853 4.4:+634080 None:intergenic
GGGTAAATCATGATGGGAGA+AGG 0.576400 4.4:+634086 None:intergenic
AAGCTCCACCTTCTTACGGT+AGG 0.576815 4.4:+634147 MS.gene040154:CDS
GAAACAGCACAATCAACGAT+TGG 0.581574 4.4:+634750 MS.gene040154:CDS
GATTGGAAGTATACTTGTCA+AGG 0.585048 4.4:+634767 MS.gene040154:CDS
TGGCTAGACCTACCGTAAGA+AGG 0.586301 4.4:-634155 None:intergenic
TCGTTCCATTTATTAACAGG+TGG 0.588971 4.4:-634516 None:intergenic
AAATCTTTGAGGAAATCAGC+GGG 0.596837 4.4:-634296 None:intergenic
TTAATGCTTTGTCCATGCAA+TGG 0.598699 4.4:+636453 MS.gene040154:CDS
AAATTGGAAGAGGGAAGAGG+TGG 0.604837 4.4:-634320 None:intergenic
ACGACGATTACAGCGACCCA+AGG 0.617860 4.4:+634216 MS.gene040154:CDS
TGTGCTGTTTCCATGCATCA+GGG 0.618858 4.4:-634738 None:intergenic
CTAGACCTACCGTAAGAAGG+TGG 0.632917 4.4:-634152 None:intergenic
AAAATCTTTGAGGAAATCAG+CGG 0.660874 4.4:-634297 None:intergenic
GCATCTCTTCTTCAACGAGA+CGG 0.670836 4.4:-634256 None:intergenic
CAAAGCATTAAGCTCATATG+CGG 0.683946 4.4:-636441 None:intergenic
CGACGATTACAGCGACCCAA+GGG 0.693830 4.4:+634217 MS.gene040154:CDS
ATGAGCGTGTAAGAGCTGGT+AGG 0.696204 4.4:+634451 MS.gene040154:CDS
GACCTATCAAGAGAAACAGG+AGG 0.712656 4.4:-634474 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTATTTTTTAATGAATA+AGG + chr4.4:635483-635502 MS.gene040154:intron 10.0%
!! ATTAAAAACTTAGAAGAAAA+AGG - chr4.4:635405-635424 None:intergenic 15.0%
!! GAAAATGAAAATGAAAAATA+TGG - chr4.4:635252-635271 None:intergenic 15.0%
!!! TTTGTAAATTTTGTTTTTCT+TGG + chr4.4:636578-636597 MS.gene040154:intron 15.0%
!! AATATACAGAATGGAAAATT+TGG + chr4.4:634696-634715 MS.gene040154:intron 20.0%
!! AGAATGTTTCATAGTAAATA+TGG + chr4.4:635011-635030 MS.gene040154:intron 20.0%
!! ATATTTAATGAATCAACGTT+GGG - chr4.4:635187-635206 None:intergenic 20.0%
!! ATGAATGTTTCACATAAATA+TGG + chr4.4:635656-635675 MS.gene040154:intron 20.0%
!! ATTGATTACTTTCATGTTTA+GGG + chr4.4:635357-635376 MS.gene040154:intron 20.0%
!! GTATATTAACTTAAACTAGT+TGG - chr4.4:634683-634702 None:intergenic 20.0%
!! GTTAATTATTACCTGAAAAT+TGG - chr4.4:634339-634358 None:intergenic 20.0%
!! TTAAAATCGATGAAAGAAAA+AGG - chr4.4:636168-636187 None:intergenic 20.0%
!! TTTAAAAATAACAGTGACAA+GGG - chr4.4:636364-636383 None:intergenic 20.0%
!!! AATTTGATTTGCATAAGTAA+AGG - chr4.4:634894-634913 None:intergenic 20.0%
!!! GTTTAAGTTAATATACAGAA+TGG + chr4.4:634687-634706 MS.gene040154:intron 20.0%
!!! TTTCATCGATTTTAATTTTG+AGG + chr4.4:636173-636192 MS.gene040154:intron 20.0%
!!! TTTTAAAAATAACAGTGACA+AGG - chr4.4:636365-636384 None:intergenic 20.0%
!!! TTTTTCCTTTTTTCAAAACA+AGG + chr4.4:635424-635443 MS.gene040154:intron 20.0%
! AAGAAAAAGGTGAATAAAAC+TGG - chr4.4:635392-635411 None:intergenic 25.0%
! ATTAAATATGTTCTTGACTC+TGG + chr4.4:635198-635217 MS.gene040154:intron 25.0%
! CATATTTAATGAATCAACGT+TGG - chr4.4:635188-635207 None:intergenic 25.0%
! CTTGTTAATTAGGAACTTAA+GGG - chr4.4:635722-635741 None:intergenic 25.0%
! GATTGATTACTTTCATGTTT+AGG + chr4.4:635356-635375 MS.gene040154:intron 25.0%
!! ACTTCTTCATATTTTTCTCT+TGG + chr4.4:635558-635577 MS.gene040154:intron 25.0%
!! ACTTGTTAATTAGGAACTTA+AGG - chr4.4:635723-635742 None:intergenic 25.0%
!! GATTAAGCTTTTTGTTGAAT+TGG + chr4.4:634964-634983 MS.gene040154:intron 25.0%
!! GGTTTGAATACTTGTTAATT+AGG - chr4.4:635732-635751 None:intergenic 25.0%
!! TTTATTCTTCCATATTGGTT+TGG + chr4.4:635756-635775 MS.gene040154:intron 25.0%
!!! TCTCAAAATTACTAGTCTTA+AGG + chr4.4:636120-636139 MS.gene040154:intron 25.0%
!!! TTCAACCTTGTTTTGAAAAA+AGG - chr4.4:635432-635451 None:intergenic 25.0%
AAAACAAAACAAAACCCTAG+CGG - chr4.4:634386-634405 None:intergenic 30.0%
AAATTAAAGTGAAGACCTGA+TGG - chr4.4:634598-634617 None:intergenic 30.0%
AATATGAGCCACAGTATAAT+TGG - chr4.4:634806-634825 None:intergenic 30.0%
ACAAAGTATGTTCCTTTAAC+TGG + chr4.4:635281-635300 MS.gene040154:intron 30.0%
ACTTCTATGTCTTCTATCAT+GGG + chr4.4:635458-635477 MS.gene040154:intron 30.0%
ATTACCTGAAAATTGGAAGA+GGG - chr4.4:634332-634351 None:intergenic 30.0%
CAATATGGAAGAATAAAGTC+AGG - chr4.4:635753-635772 None:intergenic 30.0%
CTGACTTTATTCTTCCATAT+TGG + chr4.4:635751-635770 MS.gene040154:intron 30.0%
GGAAAAGAAGAAATCTCTTA+AGG + chr4.4:635141-635160 MS.gene040154:intron 30.0%
GTTGCTTAATGTGAAGAAAA+AGG - chr4.4:636044-636063 None:intergenic 30.0%
TAACTGGCAATGATGATAAA+AGG + chr4.4:635297-635316 MS.gene040154:intron 30.0%
TACTTCTATGTCTTCTATCA+TGG + chr4.4:635457-635476 MS.gene040154:intron 30.0%
TATTACCTGAAAATTGGAAG+AGG - chr4.4:634333-634352 None:intergenic 30.0%
TCAACAAAAAGCTTAATCTG+AGG - chr4.4:634962-634981 None:intergenic 30.0%
TCACATAAATATGGTAGTTG+AGG + chr4.4:635665-635684 MS.gene040154:intron 30.0%
TCATCGTTCCATTTATTAAC+AGG - chr4.4:634522-634541 None:intergenic 30.0%
TCTACTACCATAGAAGTAAA+TGG - chr4.4:635338-635357 None:intergenic 30.0%
TTATCATCATTGCCAGTTAA+AGG - chr4.4:635296-635315 None:intergenic 30.0%
TTCTTCAATATCAAACCATC+AGG + chr4.4:634580-634599 MS.gene040154:CDS 30.0%
TTGAAAAAGTTAACCGTGAA+AGG + chr4.4:636304-636323 MS.gene040154:CDS 30.0%
TTGTTCATCCAATTATACTG+TGG + chr4.4:634795-634814 MS.gene040154:intron 30.0%
! AAAATCTTTGAGGAAATCAG+CGG - chr4.4:634300-634319 None:intergenic 30.0%
! AATGGAAAATTTGGAGTTGT+TGG + chr4.4:634705-634724 MS.gene040154:CDS 30.0%
! CTCCTTTTTCTTCACATAAA+AGG + chr4.4:636063-636082 MS.gene040154:intron 30.0%
! TATTTTTCTCCTGAATCCAA+AGG + chr4.4:635521-635540 MS.gene040154:intron 30.0%
! TTCTTCTTTTCCAGCTAATA+AGG - chr4.4:635133-635152 None:intergenic 30.0%
! TTGGAGTTGTTGGTTAAATA+TGG + chr4.4:634715-634734 MS.gene040154:CDS 30.0%
!! ACTAGTAATTTTGAGAGCAT+TGG - chr4.4:636116-636135 None:intergenic 30.0%
!! TATCACTTTTCGTATAGCAT+TGG + chr4.4:636221-636240 MS.gene040154:intron 30.0%
!!! AGTTTTAGAGTGTTAGAAAG+AGG + chr4.4:635957-635976 MS.gene040154:intron 30.0%
!!! CTAGTAATTTTGAGAGCATT+GGG - chr4.4:636115-636134 None:intergenic 30.0%
!!! GTTTTAGAGTGTTAGAAAGA+GGG + chr4.4:635958-635977 MS.gene040154:intron 30.0%
!!! GTTTTTTTCTTTCTTTCCAG+AGG + chr4.4:636631-636650 MS.gene040154:intron 30.0%
AAAAATAACAGTGACAAGGG+TGG - chr4.4:636361-636380 None:intergenic 35.0%
AAACAAAACAAAACCCTAGC+GGG - chr4.4:634385-634404 None:intergenic 35.0%
AACCACCACCTGTTAATAAA+TGG + chr4.4:634511-634530 MS.gene040154:CDS 35.0%
AGTTGCTTAGACTGCAATTA+GGG - chr4.4:636021-636040 None:intergenic 35.0%
CCTGATGATATTTCCTTTCA+CGG - chr4.4:636320-636339 None:intergenic 35.0%
CTAAAACTCACTCTCCTATT+GGG - chr4.4:635945-635964 None:intergenic 35.0%
CTTCAGGATTATCCAATGAT+TGG + chr4.4:634420-634439 MS.gene040154:intron 35.0%
GATATTGCATACAACAACCA+AGG - chr4.4:635054-635073 None:intergenic 35.0%
GATTCTTTAAGTCTCTTGCT+TGG + chr4.4:635828-635847 MS.gene040154:intron 35.0%
GGATTCAGGAGAAAAATAGA+AGG - chr4.4:635519-635538 None:intergenic 35.0%
TCATACTCTCTACCAATCAT+TGG - chr4.4:634435-634454 None:intergenic 35.0%
TCGTTCCATTTATTAACAGG+TGG - chr4.4:634519-634538 None:intergenic 35.0%
TTAATGCTTTGTCCATGCAA+TGG + chr4.4:636453-636472 MS.gene040154:CDS 35.0%
TTCCATTTATTAACAGGTGG+TGG - chr4.4:634516-634535 None:intergenic 35.0%
TTGATTTACGATTCTGCTTC+AGG + chr4.4:634404-634423 MS.gene040154:intron 35.0%
TTGGATGCTATCACTGAAAA+TGG + chr4.4:636661-636680 MS.gene040154:CDS 35.0%
TTGTTGTATGCAATATCCTG+CGG + chr4.4:635057-635076 MS.gene040154:intron 35.0%
! AAATCTTTGAGGAAATCAGC+GGG - chr4.4:634299-634318 None:intergenic 35.0%
! CAAAGCATTAAGCTCATATG+CGG - chr4.4:636444-636463 None:intergenic 35.0%
! CGCCTTTTATGTGAAGAAAA+AGG - chr4.4:636068-636087 None:intergenic 35.0%
! GATTGGAAGTATACTTGTCA+AGG + chr4.4:634767-634786 MS.gene040154:CDS 35.0%
! TAATCTGAGGTATGTCAGAA+TGG - chr4.4:634949-634968 None:intergenic 35.0%
! TCTAAAACTCACTCTCCTAT+TGG - chr4.4:635946-635965 None:intergenic 35.0%
! TTGCGTGCATTTTATGTACA+AGG - chr4.4:635890-635909 None:intergenic 35.0%
!! GACTTTAAGACCTTATTAGC+TGG + chr4.4:635120-635139 MS.gene040154:intron 35.0%
!! TGGCTGATTTCATCTAGTTT+TGG + chr4.4:636598-636617 MS.gene040154:intron 35.0%
!! TGGTGGTTCTAATTCATATC+TGG - chr4.4:634499-634518 None:intergenic 35.0%
AAAATGAGATCAGTGCACTG+TGG + chr4.4:635596-635615 MS.gene040154:intron 40.0%
AAATGGCCAACTGGCAAATT+CGG + chr4.4:636678-636697 MS.gene040154:CDS 40.0%
AATCCACACAGCAACAAATG+TGG - chr4.4:634848-634867 None:intergenic 40.0%
AATGGAACGATGAAACTGCT+TGG + chr4.4:634529-634548 MS.gene040154:CDS 40.0%
ACACATGAGTTTCACCCAAT+AGG + chr4.4:635928-635947 MS.gene040154:intron 40.0%
ATATGTCTCGAGCACATCAA+AGG - chr4.4:635698-635717 None:intergenic 40.0%
ATGATAAAAGGCCGGTCTTA+CGG + chr4.4:635309-635328 MS.gene040154:intron 40.0%
ATGATTCCGAATTTGCCAGT+TGG - chr4.4:636687-636706 None:intergenic 40.0%
CAGAATGCAGAAATTAGCTC+AGG + chr4.4:636266-636285 MS.gene040154:intron 40.0%
CATGATTGACCTTTGGATTC+AGG - chr4.4:635533-635552 None:intergenic 40.0%
CCGTGAAAGGAAATATCATC+AGG + chr4.4:636317-636336 MS.gene040154:CDS 40.0%
CTCAAGCAACCAAACCAATA+TGG - chr4.4:635768-635787 None:intergenic 40.0%
CTGAATCCAAAGGTCAATCA+TGG + chr4.4:635531-635550 MS.gene040154:intron 40.0%
GAAACAGCACAATCAACGAT+TGG + chr4.4:634750-634769 MS.gene040154:CDS 40.0%
GAAGAGGTGGAAAATCTTTG+AGG - chr4.4:634310-634329 None:intergenic 40.0%
GAGTTGCTTAGACTGCAATT+AGG - chr4.4:636022-636041 None:intergenic 40.0%
GGAGAAAGAGTTAGTTAGTG+TGG - chr4.4:634361-634380 None:intergenic 40.0%
GTATTCCTGGCATTTCTCTA+GGG + chr4.4:635980-635999 MS.gene040154:intron 40.0%
GTTCAACCATGATTGACCTT+TGG - chr4.4:635540-635559 None:intergenic 40.0%
TATCACTGAAAATGGCCAAC+TGG + chr4.4:636669-636688 MS.gene040154:CDS 40.0%
TATTCCTGGCATTTCTCTAG+GGG + chr4.4:635981-636000 MS.gene040154:intron 40.0%
TGAAAATTGGAAGAGGGAAG+AGG - chr4.4:634326-634345 None:intergenic 40.0%
TGGCAATGATGATAAAAGGC+CGG + chr4.4:635301-635320 MS.gene040154:intron 40.0%
TGGGTGAAACTCATGTGTTA+AGG - chr4.4:635926-635945 None:intergenic 40.0%
TGTGAAACATTCATATCCGC+AGG - chr4.4:635650-635669 None:intergenic 40.0%
TGTTGTATGCAATATCCTGC+TGG + chr4.4:635058-635077 MS.gene040154:intron 40.0%
TTAAATATGGCCCTGATGCA+TGG + chr4.4:634728-634747 MS.gene040154:CDS 40.0%
! AGGCAATGCATCGATGATTT+CGG - chr4.4:634189-634208 None:intergenic 40.0%
! ATTCCACATTTGTTGCTGTG+TGG + chr4.4:634842-634861 MS.gene040154:intron 40.0%
! TCTTCCCTCTTCCAATTTTC+AGG + chr4.4:634325-634344 MS.gene040154:CDS 40.0%
! TTTTCTTTCTTTCCAGAGGC+TGG + chr4.4:636635-636654 MS.gene040154:intron 40.0%
!! TGTTAGAAAGAGGGTATTCC+TGG + chr4.4:635967-635986 MS.gene040154:intron 40.0%
AAATTGGAAGAGGGAAGAGG+TGG - chr4.4:634323-634342 None:intergenic 45.0%
ACAGAGCTCATTCCATTGCA+TGG - chr4.4:636468-636487 None:intergenic 45.0%
ATGAATCAACGTTGGGACGA+TGG - chr4.4:635180-635199 None:intergenic 45.0%
CGACTTCGATCTTAACCCTT+GGG - chr4.4:634235-634254 None:intergenic 45.0%
CTGGACCTATCAAGAGAAAC+AGG - chr4.4:634480-634499 None:intergenic 45.0%
CTGTAATCGTCGTCGATGTA+AGG - chr4.4:634209-634228 None:intergenic 45.0%
CTTGAAGCTCCACCTTCTTA+CGG + chr4.4:634143-634162 MS.gene040154:CDS 45.0%
GACCTATCAAGAGAAACAGG+AGG - chr4.4:634477-634496 None:intergenic 45.0%
GCATCTCTTCTTCAACGAGA+CGG - chr4.4:634259-634278 None:intergenic 45.0%
GGCTATGCCTAATGATGCAA+AGG - chr4.4:636094-636113 None:intergenic 45.0%
GGTATTCCTGGCATTTCTCT+AGG + chr4.4:635979-635998 MS.gene040154:intron 45.0%
GTATGCAATATCCTGCTGGT+TGG + chr4.4:635062-635081 MS.gene040154:intron 45.0%
TACTTTGAGCATGACAGCCT+TGG + chr4.4:635034-635053 MS.gene040154:intron 45.0%
TCGACTTCGATCTTAACCCT+TGG - chr4.4:634236-634255 None:intergenic 45.0%
TGAGAAGAGAAGCAGCAGAA+AGG + chr4.4:636546-636565 MS.gene040154:CDS 45.0%
TTATCATTCGACCAACCAGC+AGG - chr4.4:635076-635095 None:intergenic 45.0%
! ACGGCTGCCATTTACTTCTA+TGG + chr4.4:635328-635347 MS.gene040154:intron 45.0%
!! TGTGCTGTTTCCATGCATCA+GGG - chr4.4:634741-634760 None:intergenic 45.0%
!! TTGGTTTGGTTGCTTGAGTG+AGG + chr4.4:635770-635789 MS.gene040154:intron 45.0%
!! TTGTGCTGTTTCCATGCATC+AGG - chr4.4:634742-634761 None:intergenic 45.0%
!!! GAGGAAATCAGCGGGTTTTT+TGG - chr4.4:634291-634310 None:intergenic 45.0%
!!! TTCTATTTTAATTAATTTTT+TGG + chr4.4:635098-635117 MS.gene040154:intron 5.0%
AAGCTCCACCTTCTTACGGT+AGG + chr4.4:634147-634166 MS.gene040154:CDS 50.0%
AATCAACGTTGGGACGATGG+AGG - chr4.4:635177-635196 None:intergenic 50.0%
ACCAGTGCCTCTAGTGAACT+TGG - chr4.4:635229-635248 None:intergenic 50.0%
ATGAGCGTGTAAGAGCTGGT+AGG + chr4.4:634451-634470 MS.gene040154:CDS 50.0%
CAAAACAAAACCCTAGCGGG+CGG - chr4.4:634382-634401 None:intergenic 50.0%
CAGTGCCTCTAGTGAACTTG+GGG - chr4.4:635227-635246 None:intergenic 50.0%
CCAGTGCCTCTAGTGAACTT+GGG - chr4.4:635228-635247 None:intergenic 50.0%
CTAGACCTACCGTAAGAAGG+TGG - chr4.4:634155-634174 None:intergenic 50.0%
GAGTATGAGCGTGTAAGAGC+TGG + chr4.4:634447-634466 MS.gene040154:CDS 50.0%
GGAAGAAGCAGCAGCAGTAA+CGG + chr4.4:634107-634126 MS.gene040154:CDS 50.0%
GGCGACTCCTTTGCATCATT+AGG + chr4.4:636084-636103 MS.gene040154:intron 50.0%
GTAAATGGCAGCCGTAAGAC+CGG - chr4.4:635323-635342 None:intergenic 50.0%
TAACAGTGACAAGGGTGGAC+AGG - chr4.4:636356-636375 None:intergenic 50.0%
TCTTTCCAGAGGCTGGAACT+TGG + chr4.4:636642-636661 MS.gene040154:intron 50.0%
TGGCTAGACCTACCGTAAGA+AGG - chr4.4:634158-634177 None:intergenic 50.0%
TTGTCCCCTAGAGAAATGCC+AGG - chr4.4:635988-636007 None:intergenic 50.0%
! GGCCTCCTGTTTCTCTTGAT+AGG + chr4.4:634472-634491 MS.gene040154:CDS 50.0%
! TGCATCGATGATTTCGGCGT+CGG - chr4.4:634183-634202 None:intergenic 50.0%
AACTCTTTCTCCGCCCGCTA+GGG + chr4.4:634369-634388 MS.gene040154:intron 55.0%
ACGACGATTACAGCGACCCA+AGG + chr4.4:634216-634235 MS.gene040154:CDS 55.0%
AGCATCCAAGTTCCAGCCTC+TGG - chr4.4:636650-636669 None:intergenic 55.0%
CGACGATTACAGCGACCCAA+GGG + chr4.4:634217-634236 MS.gene040154:CDS 55.0%
TAACTCTTTCTCCGCCCGCT+AGG + chr4.4:634368-634387 MS.gene040154:intron 55.0%
TGCCTCTAGTGAACTTGGGG+AGG - chr4.4:635224-635243 None:intergenic 55.0%
! CCCAAGTTCACTAGAGGCAC+TGG + chr4.4:635225-635244 MS.gene040154:intron 55.0%
! CGATGATTTCGGCGTCGGAA+TGG - chr4.4:634178-634197 None:intergenic 55.0%
GGCCTCCCCAAGTTCACTAG+AGG + chr4.4:635219-635238 MS.gene040154:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 634095 636708 634095 ID=MS.gene040154
chr4.4 mRNA 634095 636708 634095 ID=MS.gene040154.t1;Parent=MS.gene040154
chr4.4 exon 634095 634346 634095 ID=MS.gene040154.t1.exon1;Parent=MS.gene040154.t1
chr4.4 CDS 634095 634346 634095 ID=cds.MS.gene040154.t1;Parent=MS.gene040154.t1
chr4.4 exon 634426 634601 634426 ID=MS.gene040154.t1.exon2;Parent=MS.gene040154.t1
chr4.4 CDS 634426 634601 634426 ID=cds.MS.gene040154.t1;Parent=MS.gene040154.t1
chr4.4 exon 634705 634788 634705 ID=MS.gene040154.t1.exon3;Parent=MS.gene040154.t1
chr4.4 CDS 634705 634788 634705 ID=cds.MS.gene040154.t1;Parent=MS.gene040154.t1
chr4.4 exon 636269 636338 636269 ID=MS.gene040154.t1.exon4;Parent=MS.gene040154.t1
chr4.4 CDS 636269 636338 636269 ID=cds.MS.gene040154.t1;Parent=MS.gene040154.t1
chr4.4 exon 636434 636567 636434 ID=MS.gene040154.t1.exon5;Parent=MS.gene040154.t1
chr4.4 CDS 636434 636567 636434 ID=cds.MS.gene040154.t1;Parent=MS.gene040154.t1
chr4.4 exon 636651 636708 636651 ID=MS.gene040154.t1.exon6;Parent=MS.gene040154.t1
chr4.4 CDS 636651 636708 636651 ID=cds.MS.gene040154.t1;Parent=MS.gene040154.t1
Gene Sequence

>MS.gene040154

ATGATGGGAGAAGGAAGAAGCAGCAGCAGTAACGGTGATGTTCTGATGCTTGAAGCTCCACCTTCTTACGGTAGGTCTAGCCATTCCGACGCCGAAATCATCGATGCATTGCCTTACATCGACGACGATTACAGCGACCCAAGGGTTAAGATCGAAGTCGACCGTCTCGTTGAAGAAGAGATGCGTCGCAGCTCCAAAAAACCCGCTGATTTCCTCAAAGATTTTCCACCTCTTCCCTCTTCCAATTTTCAGGTAATAATTAACCACACTAACTAACTCTTTCTCCGCCCGCTAGGGTTTTGTTTTGTTTTGATTTACGATTCTGCTTCAGGATTATCCAATGATTGGTAGAGAGTATGAGCGTGTAAGAGCTGGTAGGCCTCCTGTTTCTCTTGATAGGTCCAGATATGAATTAGAACCACCACCTGTTAATAAATGGAACGATGAAACTGCTTGGAAACTTGCTATTCAACGAGCTCAACGACTTCTTCAATATCAAACCATCAGGTCTTCACTTTAATTTTTTTTTTTTTTTTTTTTAATAAATGTTTTAAGATTCAGATTATCATCTACTTGTTTGTTTAACCAACTAGTTTAAGTTAATATACAGAATGGAAAATTTGGAGTTGTTGGTTAAATATGGCCCTGATGCATGGAAACAGCACAATCAACGATTGGAAGTATACTTGTCAAGGTTCGTTTGTTCATCCAATTATACTGTGGCTCATATTTAGAGTAAACTCTTGAATTCCACATTTGTTGCTGTGTGGATTCAGTATGTTTTGTTCACTATTTGCCTTTACTTATGCAAATCAAATTTTGCTTATTTCATATATTAGCACATGACATGACCATTCTGACATACCTCAGATTAAGCTTTTTGTTGAATTGGTTCTTGAGAGTGATTCTGCAGATAAGAATGTTTCATAGTAAATATGGTACTTTGAGCATGACAGCCTTGGTTGTTGTATGCAATATCCTGCTGGTTGGTCGAATGATAATGTTCTATTTTAATTAATTTTTTGGACTTTAAGACCTTATTAGCTGGAAAAGAAGAAATCTCTTAAGGAAATCATTAACCTCCATCGTCCCAACGTTGATTCATTAAATATGTTCTTGACTCTGGCCTCCCCAAGTTCACTAGAGGCACTGGTCCATATTTTTCATTTTCATTTTCAAACAAAACACAAAGTATGTTCCTTTAACTGGCAATGATGATAAAAGGCCGGTCTTACGGCTGCCATTTACTTCTATGGTAGTAGATTGATTACTTTCATGTTTAGGGTTTTCTGAGCCAGTTTTATTCACCTTTTTCTTCTAAGTTTTTAATTTTTCCTTTTTTCAAAACAAGGTTGAATTTTCTACTTCTATGTCTTCTATCATGGGTCATTCTATTTTTTAATGAATAAGGTCAATGATTTCCTTCTATTTTTCTCCTGAATCCAAAGGTCAATCATGGTTGAACTTCTTCATATTTTTCTCTTGGAGAAATCTAGTGACAAAAATGAGATCAGTGCACTGTGGTGAATTATTTTGTTGTTGTATGCAATATCCTGCGGATATGAATGTTTCACATAAATATGGTAGTTGAGGTTGACAGCCTTTGATGTGCTCGAGACATATTCCCTTAAGTTCCTAATTAACAAGTATTCAAACCTGACTTTATTCTTCCATATTGGTTTGGTTGCTTGAGTGAGGCTTACTTGAGTGTCTTTCTAAAGAAACTATTAGCAGATTCTTTAAGTCTCTTGCTTGGAGCATTTCTTAGTTCAGTGCTTCACAATACTCGTTACCTTGTACATAAAATGCACGCAACATATTATTAATTCCTTAACACATGAGTTTCACCCAATAGGAGAGTGAGTTTTAGAGTGTTAGAAAGAGGGTATTCCTGGCATTTCTCTAGGGGACAAACATCTTTATCCCTAATTGCAGTCTAAGCAACTCCTTTTTCTTCACATTAAGCAACTCCTTTTTCTTCACATAAAAGGCGACTCCTTTGCATCATTAGGCATAGCCCAATGCTCTCAAAATTACTAGTCTTAAGGACTGTATTTCATAGCATTATATCCTTTTTCTTTCATCGATTTTAATTTTGAGGAACTATTGTTCTGTTGTCACTTACATATCACTTTTCGTATAGCATTGGTTACAGTTGTGTTATCTATTTTCAGAATGCAGAAATTAGCTCAGGAACAAAATGATAAGATTGAAAAAGTTAACCGTGAAAGGAAATATCATCAGGTGAATATGACTTTCCTGTCCACCCTTGTCACTGTTATTTTTAAAATTCTTGTTAAGTTTACTTAAAGTCACATTTTTTTAATAACTATTGTCAGCAAAACACCGCATATGAGCTTAATGCTTTGTCCATGCAATGGAATGAGCTCTGTCAGAAAAATATAGACATCAAAGTTGTGTGTGCTTCAGTTGAAACTCACTTAAATGAACTGAGAAGAGAAGCAGCAGAAAGGTAACTCAGCTTTGTAAATTTTGTTTTTCTTGGCTGATTTCATCTAGTTTTGGTGTGTAATTAGTTTTTTTCTTTCTTTCCAGAGGCTGGAACTTGGATGCTATCACTGAAAATGGCCAACTGGCAAATTCGGAATCATGA
Protein sequence

>MS.gene040154.t1

MMGEGRSSSSNGDVLMLEAPPSYGRSSHSDAEIIDALPYIDDDYSDPRVKIEVDRLVEEEMRRSSKKPADFLKDFPPLPSSNFQDYPMIGREYERVRAGRPPVSLDRSRYELEPPPVNKWNDETAWKLAIQRAQRLLQYQTIRMENLELLVKYGPDAWKQHNQRLEVYLSRMQKLAQEQNDKIEKVNRERKYHQQNTAYELNALSMQWNELCQKNIDIKVVCASVETHLNELRREAAERGWNLDAITENGQLANSES