AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015568

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015568.t1 MTR_7g115550 92.000 725 28 2 4 704 8 726 0.0 1275
MS.gene015568.t1 MTR_7g115550 92.033 728 28 2 4 707 8 729 0.0 1273
MS.gene015568.t1 MTR_5g010470 89.155 710 36 4 4 706 8 683 0.0 1179
MS.gene015568.t1 MTR_7g061330 36.364 110 64 2 4 112 62 166 4.93e-13 72.8
MS.gene015568.t1 MTR_7g461410 36.364 110 64 2 4 112 62 166 4.93e-13 72.8
MS.gene015568.t1 MTR_7g061330 36.364 110 64 2 4 112 26 130 6.25e-13 72.4
MS.gene015568.t1 MTR_8g468380 32.353 102 64 1 3 104 22 118 1.75e-11 67.4
MS.gene015568.t1 MTR_3g110028 38.462 78 48 0 4 81 86 163 2.00e-11 68.2
MS.gene015568.t1 MTR_3g110028 32.727 110 68 2 4 112 34 138 8.60e-11 65.9
MS.gene015568.t1 MTR_6g027340 40.789 76 45 0 6 81 19 94 2.57e-11 63.9
MS.gene015568.t1 MTR_6g027360 40.741 81 48 0 1 81 76 156 4.08e-11 65.1
MS.gene015568.t1 MTR_5g038910 32.456 114 68 2 3 116 26 130 5.74e-11 65.9
MS.gene015568.t1 MTR_7g451170 38.750 80 49 0 4 83 192 271 6.14e-11 65.5
MS.gene015568.t1 MTR_1g026870 32.727 110 68 2 4 112 34 138 6.25e-11 66.6
MS.gene015568.t1 MTR_5g038910 32.456 114 68 2 3 116 26 130 7.89e-11 65.1
MS.gene015568.t1 MTR_6g027370 38.961 77 47 0 4 80 100 176 7.95e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015568.t1 AT1G09770 73.590 727 157 5 4 703 8 726 0.0 1018
MS.gene015568.t1 AT3G18100 35.294 102 59 2 4 104 547 642 1.11e-13 75.5
MS.gene015568.t1 AT3G18100 33.663 101 62 2 6 106 498 593 2.36e-11 67.8
MS.gene015568.t1 AT3G18100 35.294 102 59 2 4 104 499 594 1.77e-13 74.7
MS.gene015568.t1 AT3G18100 33.663 101 62 2 6 106 450 545 4.25e-11 67.0
MS.gene015568.t1 AT3G18100 35.294 102 59 2 4 104 386 481 2.10e-13 74.3
MS.gene015568.t1 AT3G18100 33.663 101 62 2 6 106 337 432 5.56e-11 66.2
MS.gene015568.t1 AT3G18100 35.294 102 59 2 4 104 334 429 2.88e-13 73.6
MS.gene015568.t1 AT3G18100 33.663 101 62 2 6 106 285 380 8.26e-11 65.9
MS.gene015568.t1 AT5G02320 34.862 109 67 1 4 112 76 180 3.11e-13 73.6
MS.gene015568.t1 AT5G02320 34.862 109 67 1 4 112 76 180 3.11e-13 73.6
MS.gene015568.t1 AT5G02320 34.862 109 67 1 4 112 16 120 3.44e-13 73.2
MS.gene015568.t1 AT5G11510 35.455 110 65 2 4 112 30 134 2.64e-12 70.9
MS.gene015568.t1 AT5G11510 35.455 110 65 2 4 112 30 134 2.64e-12 70.9
MS.gene015568.t1 AT5G11510 35.455 110 65 2 4 112 30 134 2.64e-12 70.9
MS.gene015568.t1 AT5G11510 35.455 110 65 2 4 112 30 134 5.46e-12 69.7
MS.gene015568.t1 AT5G11510 35.455 110 65 2 4 112 30 134 6.76e-12 69.3
MS.gene015568.t1 AT3G09370 34.545 110 66 2 4 112 84 188 1.09e-11 68.2
MS.gene015568.t1 AT3G09370 34.545 110 66 2 4 112 79 183 1.30e-11 68.2
MS.gene015568.t1 AT4G18770 38.889 90 50 1 4 93 218 302 1.41e-11 67.8
MS.gene015568.t1 AT3G09370 34.545 110 66 2 4 112 92 196 1.63e-11 67.8
MS.gene015568.t1 AT4G33450 38.462 78 48 0 4 81 20 97 2.15e-11 65.1
MS.gene015568.t1 AT2G02820 30.159 126 69 2 3 114 30 150 5.38e-11 66.2
MS.gene015568.t1 AT2G02820 30.159 126 69 2 3 114 30 150 7.92e-11 65.5
MS.gene015568.t1 AT4G32730 32.727 110 68 2 4 112 36 140 8.43e-11 66.2
MS.gene015568.t1 AT4G32730 32.727 110 68 2 4 112 36 140 8.43e-11 66.2
MS.gene015568.t1 AT4G32730 32.727 110 68 2 4 112 36 140 8.43e-11 66.2
MS.gene015568.t1 AT4G32730 32.727 110 68 2 4 112 36 140 8.43e-11 66.2
MS.gene015568.t1 AT5G17800 40.000 80 48 0 2 81 92 171 9.84e-11 64.3

Find 209 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTCTTTCTAACTGTTTC+TGG 0.038877 5.1:-4012353 None:intergenic
TTCTGGGTCATTCAGCTTCT+TGG 0.153986 5.1:-4012336 None:intergenic
TGCCGGCGCCATACCACTTC+TGG 0.177175 5.1:-4012768 None:intergenic
ATTTCATAACAGCAGCTTTC+AGG 0.225007 5.1:-4011530 None:intergenic
CCGCATCTCTGGAGCTTATT+AGG 0.229145 5.1:+4013137 MS.gene015568:CDS
GGAGTAAGGCCTGCACTTCC+AGG 0.240853 5.1:-4012746 None:intergenic
TTGGGTGTCTGTGGATAATT+AGG 0.241982 5.1:-4012506 None:intergenic
CATGATGGAAGCTGAAAATT+TGG 0.248037 5.1:+4012589 MS.gene015568:CDS
GTTCTCTGAGGAGTTCTTAA+AGG 0.283026 5.1:-4012542 None:intergenic
AAAGCTGCTGTTATGAAATA+TGG 0.287568 5.1:+4011534 MS.gene015568:CDS
GAATTGGTTGCATCACTATC+TGG 0.302904 5.1:-4012967 None:intergenic
AAAGGAGCTTCTAGCCTTAC+TGG 0.309592 5.1:+4013240 MS.gene015568:CDS
GGTCGCGCAGGCTTCGATTC+AGG 0.310060 5.1:-4011888 None:intergenic
CCCTGTCATAGAAGATTATC+AGG 0.315605 5.1:+4013351 MS.gene015568:CDS
TGGGGTCACTCCTAAGAAAA+AGG 0.319124 5.1:+4012682 MS.gene015568:CDS
AGTCCACTCAGCCTTCTTAA+TGG 0.323636 5.1:-4011646 None:intergenic
TCTTCAGCATCTTCTTGAAT+TGG 0.331097 5.1:-4012983 None:intergenic
GTTTGAGAAGAGGCCTCCTC+TGG 0.334561 5.1:+4012139 MS.gene015568:CDS
CCATTGCCTCACGAAGATAC+TGG 0.334884 5.1:-4014078 None:intergenic
ATCTCGTCGGCTTGCTCAAT+AGG 0.342238 5.1:-4013211 None:intergenic
TCAAGTTCTTCTATAGTAGT+AGG 0.344179 5.1:-4012212 None:intergenic
TAGGCCTCCTCCCGCATCTC+TGG 0.353111 5.1:+4013126 MS.gene015568:CDS
CTCCGAAGGGAACTCCTCTC+AGG 0.358383 5.1:+4012816 MS.gene015568:CDS
GCTTGAGGAGATAGCAAATA+AGG 0.373696 5.1:+4013285 MS.gene015568:CDS
CCAAAATGAGCATAGGTGTT+TGG 0.385146 5.1:+4011487 None:intergenic
TCTCGTCGGCTTGCTCAATA+GGG 0.387795 5.1:-4013210 None:intergenic
AGGCCCATTTGCTGCTCGTT+TGG 0.388358 5.1:-4013323 None:intergenic
TCAGATTTCCGATCAAGAAT+TGG 0.389053 5.1:+4012397 MS.gene015568:CDS
ATCTCTTTCTAACTGTTTCT+GGG 0.390771 5.1:-4012352 None:intergenic
GCAGGCTTCGATTCAGGATT+CGG 0.393602 5.1:-4011882 None:intergenic
CCTTGACGCCGCTTGTGTTA+AGG 0.393639 5.1:+4011803 MS.gene015568:CDS
AGGCTGCTGGGATTGATATA+AGG 0.409355 5.1:+4012069 MS.gene015568:CDS
TCTGCAACCCCTGGAAGTGC+AGG 0.411721 5.1:+4012737 MS.gene015568:CDS
GCCGGCGCCATACCACTTCT+GGG 0.416494 5.1:-4012767 None:intergenic
GGATCCAAACGAGCAGCAAA+TGG 0.417377 5.1:+4013319 MS.gene015568:CDS
AAAGGAGTCATGGCTTGGTT+GGG 0.420072 5.1:-4012524 None:intergenic
GCTACATATCAATGAAGATA+TGG 0.420115 5.1:+4012844 MS.gene015568:CDS
ACCCACAATGGTAGCACTAA+TGG 0.421586 5.1:-4011742 None:intergenic
TAAGGCAGCGGAGGAGGAAA+AGG 0.424744 5.1:+4012087 MS.gene015568:CDS
CAGTATCTTCGTGAGGCAAT+GGG 0.426353 5.1:+4014079 MS.gene015568:CDS
TTGGATGAAATTGCCAAGTT+GGG 0.429250 5.1:+4012416 MS.gene015568:CDS
AGCTTTCAGGATTTCATCCT+CGG 0.436489 5.1:-4011517 None:intergenic
ATTGGATGAAATTGCCAAGT+TGG 0.444138 5.1:+4012415 MS.gene015568:CDS
AAGAACTTGAGGGGAAAAGA+AGG 0.444403 5.1:+4012225 MS.gene015568:CDS
GCAAATAAGGAGAGAGAGAA+AGG 0.446065 5.1:+4013298 MS.gene015568:CDS
ACTAATGGTTCTCCAACTAA+TGG 0.446782 5.1:-4011727 None:intergenic
AGAGATGCGGGAGGAGGCCT+AGG 0.446989 5.1:-4013124 None:intergenic
CCATACCACTTCTGGGAGTA+AGG 0.448683 5.1:-4012760 None:intergenic
ATCCTCTTCAATCTTCTCCT+CGG 0.449369 5.1:-4013008 None:intergenic
GAGGGAGTCAGCAGTGGGAT+TGG 0.449422 5.1:-4012716 None:intergenic
AAGAGAGAATTGAAGGCTGC+TGG 0.451049 5.1:+4012056 MS.gene015568:CDS
TCCTGATAATCTTCTATGAC+AGG 0.451422 5.1:-4013352 None:intergenic
TCATACTCATCCATATCAAC+AGG 0.454291 5.1:-4011915 None:intergenic
TCCCCTGGACGCAATTTCCT+AGG 0.458724 5.1:-4011852 None:intergenic
AGCTCCAGAGATGCGGGAGG+AGG 0.462789 5.1:-4013130 None:intergenic
GTTAGATCCTTCCATTAAGA+AGG 0.466895 5.1:+4011635 MS.gene015568:CDS
CAGAAATTCCGTTTGAGAAG+AGG 0.469889 5.1:+4012129 MS.gene015568:CDS
TGCAGAGAGGCAAGATGCCC+CGG 0.470266 5.1:+4012298 MS.gene015568:CDS
TAAAGGAGTCATGGCTTGGT+TGG 0.470630 5.1:-4012525 None:intergenic
GAGTCTCAGACACCACTGTT+AGG 0.471291 5.1:+4012623 MS.gene015568:CDS
CTGAAAATTTGGCCAGGCTG+AGG 0.471566 5.1:+4012600 MS.gene015568:CDS
TTCTTAAAGGAGTCATGGCT+TGG 0.472192 5.1:-4012529 None:intergenic
TGGCATGCAGAATAGCAGCC+GGG 0.473211 5.1:-4012316 None:intergenic
TTGATATAAGGCAGCGGAGG+AGG 0.474103 5.1:+4012081 MS.gene015568:CDS
AGCCAACCGAGCACATGCTT+CGG 0.476372 5.1:-4011952 None:intergenic
CCAGTATCTTCGTGAGGCAA+TGG 0.479024 5.1:+4014078 MS.gene015568:CDS
TGATGTTGCTGATGAGGATA+GGG 0.479449 5.1:+4012169 MS.gene015568:CDS
AATTTCATCCAATTCTTGAT+CGG 0.479560 5.1:-4012405 None:intergenic
GCGACCCGATCCTGTTGATA+TGG 0.481942 5.1:+4011905 MS.gene015568:CDS
AATCTGAAGGATGCAACTCC+GGG 0.484835 5.1:-4012655 None:intergenic
TGTCTGAGACTCCCTCAGCC+TGG 0.484905 5.1:-4012612 None:intergenic
AACGATCAAAAGTCATTCAA+AGG 0.485643 5.1:+4013095 MS.gene015568:CDS
TCCTCTTCAATCTTCTCCTC+GGG 0.488427 5.1:-4013007 None:intergenic
ACCATTAGTGCTACCATTGT+GGG 0.490042 5.1:+4011741 MS.gene015568:CDS
GAGTAAGGCCTGCACTTCCA+GGG 0.490905 5.1:-4012745 None:intergenic
AGAAGAAGAGGCACGGCAGA+AGG 0.493242 5.1:+4013060 MS.gene015568:CDS
CTCCTTTCTTATCATCTCGT+CGG 0.493278 5.1:-4013224 None:intergenic
TCATTCAAAGGGAACTTCCT+AGG 0.493709 5.1:+4013107 MS.gene015568:CDS
TGCACTTCCAGGGGTTGCAG+AGG 0.493979 5.1:-4012735 None:intergenic
AAATCTGAAGGATGCAACTC+CGG 0.494050 5.1:-4012656 None:intergenic
ACGAGTAGCACTGCTGCCTT+CGG 0.495690 5.1:-4012474 None:intergenic
CTGACTCCCTCTGCAACCCC+TGG 0.496434 5.1:+4012728 MS.gene015568:CDS
TTCCGAAGCATGTGCTCGGT+TGG 0.496711 5.1:+4011950 MS.gene015568:CDS
TCTTCTATGACAGGGATAGC+AGG 0.496725 5.1:-4013343 None:intergenic
CTCAGTGGAGAACCATTAGT+TGG 0.497414 5.1:+4011715 MS.gene015568:CDS
GTCTCCGTCAGCTCTTATCA+AGG 0.499862 5.1:-4013164 None:intergenic
GAAGTGGTATGGCGCCGGCA+AGG 0.499877 5.1:+4012771 MS.gene015568:CDS
TGCTTTCCGAAGCATGTGCT+CGG 0.502006 5.1:+4011946 MS.gene015568:CDS
GTGAGAAGTAAGCTGGATGA+TGG 0.502979 5.1:+4014181 MS.gene015568:CDS
CTCATCCATATCAACAGGAT+CGG 0.503902 5.1:-4011910 None:intergenic
ATCGCTGCCCACAAGGTCAA+TGG 0.504621 5.1:-4012444 None:intergenic
AAGTAAGCTGGATGATGGGA+AGG 0.506469 5.1:+4014186 MS.gene015568:CDS
ATAGCATCTCCTTTACTAGC+TGG 0.506651 5.1:-4012566 None:intergenic
AGAGGATATGTCTGATAGAA+TGG 0.507303 5.1:+4013024 MS.gene015568:CDS
CTAATAAGCTCCAGAGATGC+GGG 0.507417 5.1:-4013136 None:intergenic
TGCAGATTTGCAAACGAGTA+GGG 0.508803 5.1:-4011583 None:intergenic
TCCCTGAGAGGAGTTCCCTT+CGG 0.510495 5.1:-4012818 None:intergenic
GATGATTCGACTTGAGAAGA+AGG 0.511403 5.1:+4014213 MS.gene015568:CDS
TGATAGAATGGCTAGAGAAA+AGG 0.511992 5.1:+4013036 MS.gene015568:CDS
TTGGCATGCAGAATAGCAGC+CGG 0.514383 5.1:-4012317 None:intergenic
CAGAGAACACCAGCTAGTAA+AGG 0.515217 5.1:+4012557 MS.gene015568:CDS
GTTGCAGAGGGAGTCAGCAG+TGG 0.516056 5.1:-4012722 None:intergenic
AAGTGGTATGGCGCCGGCAA+GGG 0.516862 5.1:+4012772 MS.gene015568:CDS
GGTTATGCCATTGACCTTGT+GGG 0.519574 5.1:+4012437 MS.gene015568:CDS
TGGGTGTCTGTGGATAATTA+GGG 0.519886 5.1:-4012505 None:intergenic
TTGATGTTGCTGATGAGGAT+AGG 0.524642 5.1:+4012168 MS.gene015568:CDS
TCGGCTTGCTCAATAGGGGT+TGG 0.524733 5.1:-4013205 None:intergenic
TGAAAATTTGGCCAGGCTGA+GGG 0.525084 5.1:+4012601 MS.gene015568:CDS
GACCCTAGGAAATTGCGTCC+AGG 0.525314 5.1:+4011849 MS.gene015568:CDS
CAAGTTCTTCTATAGTAGTA+GGG 0.528361 5.1:-4012211 None:intergenic
AGAGGAGGCCTCTTCTCAAA+CGG 0.529206 5.1:-4012137 None:intergenic
TGAGAATGTGAGAAGTAAGC+TGG 0.529343 5.1:+4014174 MS.gene015568:CDS
GCTTGCTCAATAGGGGTTGG+TGG 0.531592 5.1:-4013202 None:intergenic
GCACTTCCAGGGGTTGCAGA+GGG 0.532965 5.1:-4012734 None:intergenic
CATTGCCTCACGAAGATACT+GGG 0.534059 5.1:-4014077 None:intergenic
TCATCCATATCAACAGGATC+GGG 0.534614 5.1:-4011909 None:intergenic
AGCATTGTCATGCTCCAGTA+AGG 0.535038 5.1:-4013254 None:intergenic
ACCCTAGGAAATTGCGTCCA+GGG 0.536757 5.1:+4011850 MS.gene015568:CDS
CACTCAGCCTTCTTAATGGA+AGG 0.540594 5.1:-4011642 None:intergenic
GATCCAAACGAGCAGCAAAT+GGG 0.542547 5.1:+4013320 MS.gene015568:CDS
TTGCAGATTTGCAAACGAGT+AGG 0.543492 5.1:-4011584 None:intergenic
AGAGAGAATTGAAGGCTGCT+GGG 0.549517 5.1:+4012057 MS.gene015568:CDS
GGGTTATGCCATTGACCTTG+TGG 0.550781 5.1:+4012436 MS.gene015568:CDS
TGATCGGAAATCTGAGGTGG+TGG 0.551298 5.1:-4012389 None:intergenic
CCTTACTCCCAGAAGTGGTA+TGG 0.551739 5.1:+4012760 MS.gene015568:CDS
AGCCGACGAGATGATAAGAA+AGG 0.552168 5.1:+4013222 MS.gene015568:CDS
GAAAAGAAGGATTGATGTTG+AGG 0.552508 5.1:+4012238 MS.gene015568:CDS
GGTATGGCGCCGGCAAGGGA+TGG 0.553823 5.1:+4012776 MS.gene015568:CDS
AGGAGTTCTTAAAGGAGTCA+TGG 0.554344 5.1:-4012534 None:intergenic
TCCCAGAAGTGGTATGGCGC+CGG 0.554437 5.1:+4012766 MS.gene015568:CDS
AACCATTAGTGCTACCATTG+TGG 0.555517 5.1:+4011740 MS.gene015568:CDS
TGAGAAAGCAAGACGTTGCA+AGG 0.556741 5.1:+4012267 MS.gene015568:CDS
GTCAATGGCATAACCCAACT+TGG 0.557603 5.1:-4012429 None:intergenic
GGATTCGGATCAATCTCCCC+TGG 0.561665 5.1:-4011867 None:intergenic
CCCCTGGACGCAATTTCCTA+GGG 0.562986 5.1:-4011851 None:intergenic
TCAACAGGATCGGGTCGCGC+AGG 0.566355 5.1:-4011900 None:intergenic
CCTAATAAGCTCCAGAGATG+CGG 0.567582 5.1:-4013137 None:intergenic
ACGATCAAAAGTCATTCAAA+GGG 0.567785 5.1:+4013096 MS.gene015568:CDS
CAAAACAGTGTAAAGCTCGT+TGG 0.569337 5.1:+4011604 MS.gene015568:CDS
ACTACTATAGAAGAACTTGA+GGG 0.571318 5.1:+4012215 MS.gene015568:CDS
TTGCAGAGGGAGTCAGCAGT+GGG 0.571318 5.1:-4012721 None:intergenic
TAAAGGAGATGCTATCATGA+TGG 0.573963 5.1:+4012574 MS.gene015568:CDS
TTACTAGCTGGTGTTCTCTG+AGG 0.578802 5.1:-4012554 None:intergenic
TAGAGAAAAGGCAGAAGAAG+AGG 0.579560 5.1:+4013048 MS.gene015568:CDS
CCTTAACACAAGCGGCGTCA+AGG 0.579579 5.1:-4011803 None:intergenic
ATGAACCTGGTGATGACCCT+AGG 0.580871 5.1:+4011835 MS.gene015568:CDS
TCCGAAGGGAACTCCTCTCA+GGG 0.580985 5.1:+4012817 MS.gene015568:CDS
TTATTTGCTATCTCCTCAAG+CGG 0.583374 5.1:-4013283 None:intergenic
ATGGCTTGGTTGGGTGTCTG+TGG 0.585691 5.1:-4012515 None:intergenic
AAGGTTACATTACTCACGCA+AGG 0.586053 5.1:+4014232 MS.gene015568:CDS
AGTAAGGCCTGCACTTCCAG+GGG 0.586407 5.1:-4012744 None:intergenic
AACTCCTTGATAAGAGCTGA+CGG 0.589304 5.1:+4013160 MS.gene015568:CDS
CCTGATAATCTTCTATGACA+GGG 0.589597 5.1:-4013351 None:intergenic
GTAAAGCTCGTTGGTATGAG+TGG 0.590546 5.1:+4011613 MS.gene015568:CDS
TGCTTCAACAAAATCCTCGA+GGG 0.592155 5.1:-4014116 None:intergenic
GGCTGAGTGGACTCGAGAAG+AGG 0.592972 5.1:+4011656 MS.gene015568:CDS
CTCCTTCGCAGTGTCTTGAA+CGG 0.594673 5.1:+4011769 MS.gene015568:CDS
TGCTGATGAGGATAGGGAGG+TGG 0.595277 5.1:+4012175 MS.gene015568:CDS
AGTGTTGCCAAAATGAGCAT+AGG 0.596521 5.1:+4011480 None:intergenic
TGAGAAGTAAGCTGGATGAT+GGG 0.598085 5.1:+4014182 MS.gene015568:CDS
TACTACTATAGAAGAACTTG+AGG 0.598439 5.1:+4012214 MS.gene015568:CDS
AAAAGGCAGAAGAAGAGGCA+CGG 0.599691 5.1:+4013053 MS.gene015568:CDS
TTTGAGAAGAGGCCTCCTCT+GGG 0.600719 5.1:+4012140 MS.gene015568:CDS
CTAATGGTTCTCCACTGAGT+AGG 0.603402 5.1:-4011711 None:intergenic
TGGAAGCTGAAAATTTGGCC+AGG 0.607474 5.1:+4012594 MS.gene015568:CDS
GCTCGGTTGGCTAACACGAA+AGG 0.608258 5.1:+4011963 MS.gene015568:CDS
TCTCAGACACCACTGTTAGG+AGG 0.609284 5.1:+4012626 MS.gene015568:CDS
AGCGGAGGAGGAAAAGGAGA+GGG 0.609580 5.1:+4012093 MS.gene015568:CDS
AGAAACAGCTTGAGGAAGCG+AGG 0.613924 5.1:+4012012 MS.gene015568:CDS
CAATGCTAAGTATCCGCTTG+AGG 0.613956 5.1:+4013270 MS.gene015568:CDS
AATTTCCTAGGGTCATCACC+AGG 0.619740 5.1:-4011840 None:intergenic
CAGCGGAGGAGGAAAAGGAG+AGG 0.619802 5.1:+4012092 MS.gene015568:CDS
CTGGGATTGATATAAGGCAG+CGG 0.621106 5.1:+4012075 MS.gene015568:CDS
ACTGTTAGGAGGAGAGAACC+CGG 0.623267 5.1:+4012637 MS.gene015568:CDS
GCAGGCCTTACTCCCAGAAG+TGG 0.624004 5.1:+4012755 MS.gene015568:CDS
CGAAGGAGTACGACCCACAA+TGG 0.624367 5.1:-4011754 None:intergenic
CCCTAGGAAATTGCGTCCAG+GGG 0.631019 5.1:+4011851 MS.gene015568:CDS
CTCGTCGGCTTGCTCAATAG+GGG 0.633774 5.1:-4013209 None:intergenic
AACAGCTTGAGGAAGCGAGG+AGG 0.635219 5.1:+4012015 MS.gene015568:CDS
GGCAGCGATGAACTCACCGA+AGG 0.635534 5.1:+4012458 MS.gene015568:CDS
GGCATGCAGAATAGCAGCCG+GGG 0.639810 5.1:-4012315 None:intergenic
AAGGACGATAACTATGAACC+TGG 0.641325 5.1:+4011822 MS.gene015568:CDS
TGTTGCTGATGAGGATAGGG+AGG 0.645550 5.1:+4012172 MS.gene015568:CDS
AGAAGATGCTGAAGAGCCCG+AGG 0.646686 5.1:+4012991 MS.gene015568:CDS
CTACTATAGAAGAACTTGAG+GGG 0.654103 5.1:+4012216 MS.gene015568:CDS
GCCCGAGGAGAAGATTGAAG+AGG 0.654306 5.1:+4013006 MS.gene015568:CDS
ATAGTGCTAGACTCGAGCTA+CGG 0.656913 5.1:+4012876 MS.gene015568:CDS
TGAGTTCATCGCTGCCCACA+AGG 0.658141 5.1:-4012451 None:intergenic
GTTATCGTCCTTAACACAAG+CGG 0.659717 5.1:-4011811 None:intergenic
CTTCCATTAAGAAGGCTGAG+TGG 0.662166 5.1:+4011643 MS.gene015568:CDS
AATTCTTGATCGGAAATCTG+AGG 0.665249 5.1:-4012395 None:intergenic
AGCTAGGGAGAAACAGCTTG+AGG 0.665565 5.1:+4012004 MS.gene015568:CDS
TACCGTTCAAGACACTGCGA+AGG 0.666095 5.1:-4011771 None:intergenic
AGGTTACATTACTCACGCAA+GGG 0.667391 5.1:+4014233 MS.gene015568:CDS
CTAAGCTTACGCCTACTCAG+TGG 0.671805 5.1:+4011700 MS.gene015568:CDS
ACATCAAAATAACCCAGAGG+AGG 0.672004 5.1:-4012152 None:intergenic
TCTTGATCGGAAATCTGAGG+TGG 0.678038 5.1:-4012392 None:intergenic
GGGTTCTCTCCTCCTAACAG+TGG 0.680208 5.1:-4012635 None:intergenic
TGAAGCCCAGTATCTTCGTG+AGG 0.688109 5.1:+4014072 MS.gene015568:CDS
GTGCTTCAACAAAATCCTCG+AGG 0.688213 5.1:-4014117 None:intergenic
ATATGTAGCTCATCCCTGAG+AGG 0.688581 5.1:-4012830 None:intergenic
AGTATCTTCGTGAGGCAATG+GGG 0.696178 5.1:+4014080 MS.gene015568:CDS
GGATTGATATAAGGCAGCGG+AGG 0.699913 5.1:+4012078 MS.gene015568:CDS
TGATATGGATGAGTATGAGA+AGG 0.714958 5.1:+4011920 MS.gene015568:CDS
ATAAGCTCCAGAGATGCGGG+AGG 0.719647 5.1:-4013133 None:intergenic
TGTCATAGAAGATTATCAGG+AGG 0.727087 5.1:+4013354 MS.gene015568:CDS
GTATGAAAATGATTCCCTCG+AGG 0.743505 5.1:+4014102 MS.gene015568:CDS
CAAGGAATAAAATTGCAGAG+AGG 0.745082 5.1:+4012285 MS.gene015568:CDS
GCAACATCAAAATAACCCAG+AGG 0.761769 5.1:-4012155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATCATTTGATTAATT+AGG + chr5.1:4013776-4013795 MS.gene015568:intron 10.0%
!! AGGCATAAAAATAAAATTAA+AGG - chr5.1:4013421-4013440 None:intergenic 15.0%
!! ATTATAACTGAAAAAAAACA+AGG - chr5.1:4013763-4013782 None:intergenic 15.0%
!! AAGTTTGTATTACTATCATT+CGG - chr5.1:4013914-4013933 None:intergenic 20.0%
!! ATAATAATTAACAAGCAGTT+TGG - chr5.1:4013937-4013956 None:intergenic 20.0%
!! TATTATTATCTGTTCTCAAT+AGG + chr5.1:4014030-4014049 MS.gene015568:intron 20.0%
!!! ACAAAGTACTAATAATTTCA+AGG - chr5.1:4013559-4013578 None:intergenic 20.0%
! AATTTCATCCAATTCTTGAT+CGG - chr5.1:4012408-4012427 None:intergenic 25.0%
! ATGAAGAAAAGCGAATTAAA+AGG - chr5.1:4013441-4013460 None:intergenic 25.0%
! GAAATATGGTAAAAATCAGT+GGG + chr5.1:4011548-4011567 MS.gene015568:CDS 25.0%
! GATGCCAAGTAATTAATAAT+CGG - chr5.1:4013582-4013601 None:intergenic 25.0%
! TAGGGAATAAATGTTGTAAA+AGG - chr5.1:4013877-4013896 None:intergenic 25.0%
! TGAAATATGGTAAAAATCAG+TGG + chr5.1:4011547-4011566 MS.gene015568:CDS 25.0%
! TTGTCCGATTATTAATTACT+TGG + chr5.1:4013575-4013594 MS.gene015568:intron 25.0%
!! ATGTGAATTTCCTTTTTCTT+AGG - chr5.1:4012695-4012714 None:intergenic 25.0%
!! ATTTTTACATAAGATTCCAG+TGG - chr5.1:4013644-4013663 None:intergenic 25.0%
AAAAAGCAAAAAGGAAAGCT+AGG + chr5.1:4011988-4012007 MS.gene015568:CDS 30.0%
AAAAGCAAAAAGGAAAGCTA+GGG + chr5.1:4011989-4012008 MS.gene015568:CDS 30.0%
AAAGCTGCTGTTATGAAATA+TGG + chr5.1:4011534-4011553 MS.gene015568:CDS 30.0%
AACGATCAAAAGTCATTCAA+AGG + chr5.1:4013095-4013114 MS.gene015568:CDS 30.0%
AATATGCAACTAGCTCATAA+AGG - chr5.1:4013711-4013730 None:intergenic 30.0%
ACAGAAAAAGAGAGAATTGA+AGG + chr5.1:4012049-4012068 MS.gene015568:CDS 30.0%
ACGATCAAAAGTCATTCAAA+GGG + chr5.1:4013096-4013115 MS.gene015568:CDS 30.0%
ACTACTATAGAAGAACTTGA+GGG + chr5.1:4012215-4012234 MS.gene015568:CDS 30.0%
CAAGTTCTTCTATAGTAGTA+GGG - chr5.1:4012214-4012233 None:intergenic 30.0%
CATCTCCATAGTCAAATTTA+AGG - chr5.1:4013966-4013985 None:intergenic 30.0%
CGAAAGGTAAAAAAGCAAAA+AGG + chr5.1:4011979-4011998 MS.gene015568:CDS 30.0%
GCTACATATCAATGAAGATA+TGG + chr5.1:4012844-4012863 MS.gene015568:CDS 30.0%
TACTACTATAGAAGAACTTG+AGG + chr5.1:4012214-4012233 MS.gene015568:CDS 30.0%
TATGAGCTAGTTGCATATTA+TGG + chr5.1:4013712-4013731 MS.gene015568:intron 30.0%
TCAAGTTCTTCTATAGTAGT+AGG - chr5.1:4012215-4012234 None:intergenic 30.0%
TGACTCCTTAAATTTGACTA+TGG + chr5.1:4013958-4013977 MS.gene015568:intron 30.0%
! ATCTCTTTCTAACTGTTTCT+GGG - chr5.1:4012355-4012374 None:intergenic 30.0%
!! ACTATCTGGTACTCATTTTT+AGG - chr5.1:4012956-4012975 None:intergenic 30.0%
!!! TTATTTTGATGTTGCTGATG+AGG + chr5.1:4012163-4012182 MS.gene015568:CDS 30.0%
AAGATTCCAGTGGTTTCAAA+GGG - chr5.1:4013634-4013653 None:intergenic 35.0%
AATTCTTGATCGGAAATCTG+AGG - chr5.1:4012398-4012417 None:intergenic 35.0%
ACTAATGGTTCTCCAACTAA+TGG - chr5.1:4011730-4011749 None:intergenic 35.0%
AGAGGATATGTCTGATAGAA+TGG + chr5.1:4013024-4013043 MS.gene015568:CDS 35.0%
ATTGGATGAAATTGCCAAGT+TGG + chr5.1:4012415-4012434 MS.gene015568:CDS 35.0%
ATTTCATAACAGCAGCTTTC+AGG - chr5.1:4011533-4011552 None:intergenic 35.0%
CAAGGAATAAAATTGCAGAG+AGG + chr5.1:4012285-4012304 MS.gene015568:CDS 35.0%
CCTGATAATCTTCTATGACA+GGG - chr5.1:4013354-4013373 None:intergenic 35.0%
CTACTATAGAAGAACTTGAG+GGG + chr5.1:4012216-4012235 MS.gene015568:CDS 35.0%
GAAAAGAAGGATTGATGTTG+AGG + chr5.1:4012238-4012257 MS.gene015568:CDS 35.0%
GATCTCTTTCTAACTGTTTC+TGG - chr5.1:4012356-4012375 None:intergenic 35.0%
GTTAGATCCTTCCATTAAGA+AGG + chr5.1:4011635-4011654 MS.gene015568:CDS 35.0%
TAAAGGAGATGCTATCATGA+TGG + chr5.1:4012574-4012593 MS.gene015568:CDS 35.0%
TAAGATTCCAGTGGTTTCAA+AGG - chr5.1:4013635-4013654 None:intergenic 35.0%
TACTATCATTCGGCGAATTA+AGG - chr5.1:4013904-4013923 None:intergenic 35.0%
TCAGATTTCCGATCAAGAAT+TGG + chr5.1:4012397-4012416 MS.gene015568:CDS 35.0%
TCATACTCATCCATATCAAC+AGG - chr5.1:4011918-4011937 None:intergenic 35.0%
TCCTGATAATCTTCTATGAC+AGG - chr5.1:4013355-4013374 None:intergenic 35.0%
TCGGCGAATTAAGGTAAATA+GGG - chr5.1:4013895-4013914 None:intergenic 35.0%
TCTTCAGCATCTTCTTGAAT+TGG - chr5.1:4012986-4013005 None:intergenic 35.0%
TGATAGAATGGCTAGAGAAA+AGG + chr5.1:4013036-4013055 MS.gene015568:CDS 35.0%
TGATATGGATGAGTATGAGA+AGG + chr5.1:4011920-4011939 MS.gene015568:CDS 35.0%
TGTCATAGAAGATTATCAGG+AGG + chr5.1:4013354-4013373 MS.gene015568:CDS 35.0%
TTCGGCGAATTAAGGTAAAT+AGG - chr5.1:4013896-4013915 None:intergenic 35.0%
TTGGATGAAATTGCCAAGTT+GGG + chr5.1:4012416-4012435 MS.gene015568:CDS 35.0%
! CATGATGGAAGCTGAAAATT+TGG + chr5.1:4012589-4012608 MS.gene015568:CDS 35.0%
! TGCATCCTTCAGATTTTTCT+GGG + chr5.1:4012663-4012682 MS.gene015568:CDS 35.0%
! TTGCATCCTTCAGATTTTTC+TGG + chr5.1:4012662-4012681 MS.gene015568:CDS 35.0%
!! TTATTTGCTATCTCCTCAAG+CGG - chr5.1:4013286-4013305 None:intergenic 35.0%
AAAGAAAAACCATCCCTTGC+CGG - chr5.1:4012788-4012807 None:intergenic 40.0%
AAATCTGAAGGATGCAACTC+CGG - chr5.1:4012659-4012678 None:intergenic 40.0%
AACCATTAGTGCTACCATTG+TGG + chr5.1:4011740-4011759 MS.gene015568:CDS 40.0%
AACTCCTTGATAAGAGCTGA+CGG + chr5.1:4013160-4013179 MS.gene015568:CDS 40.0%
AAGAACTTGAGGGGAAAAGA+AGG + chr5.1:4012225-4012244 MS.gene015568:CDS 40.0%
AAGGACGATAACTATGAACC+TGG + chr5.1:4011822-4011841 MS.gene015568:CDS 40.0%
AAGGTTACATTACTCACGCA+AGG + chr5.1:4014232-4014251 MS.gene015568:CDS 40.0%
AATCATGTTGTGTACCCCAA+AGG - chr5.1:4013495-4013514 None:intergenic 40.0%
ACATCAAAATAACCCAGAGG+AGG - chr5.1:4012155-4012174 None:intergenic 40.0%
ACCATTAGTGCTACCATTGT+GGG + chr5.1:4011741-4011760 MS.gene015568:CDS 40.0%
AGATTCCAGTGGTTTCAAAG+GGG - chr5.1:4013633-4013652 None:intergenic 40.0%
AGCTTTCAGGATTTCATCCT+CGG - chr5.1:4011520-4011539 None:intergenic 40.0%
AGGAGTTCTTAAAGGAGTCA+TGG - chr5.1:4012537-4012556 None:intergenic 40.0%
AGGTTACATTACTCACGCAA+GGG + chr5.1:4014233-4014252 MS.gene015568:CDS 40.0%
ATAGCATCTCCTTTACTAGC+TGG - chr5.1:4012569-4012588 None:intergenic 40.0%
ATCATGTTGTGTACCCCAAA+GGG - chr5.1:4013494-4013513 None:intergenic 40.0%
ATCCTCTTCAATCTTCTCCT+CGG - chr5.1:4013011-4013030 None:intergenic 40.0%
ATGAAAAAAAGTCTGCGCTC+TGG + chr5.1:4012911-4012930 MS.gene015568:CDS 40.0%
CAAAACAGTGTAAAGCTCGT+TGG + chr5.1:4011604-4011623 MS.gene015568:CDS 40.0%
CAGAAATTCCGTTTGAGAAG+AGG + chr5.1:4012129-4012148 MS.gene015568:CDS 40.0%
CCCTGTCATAGAAGATTATC+AGG + chr5.1:4013351-4013370 MS.gene015568:CDS 40.0%
CTCATCCATATCAACAGGAT+CGG - chr5.1:4011913-4011932 None:intergenic 40.0%
CTCCTTTCTTATCATCTCGT+CGG - chr5.1:4013227-4013246 None:intergenic 40.0%
GAATTGGTTGCATCACTATC+TGG - chr5.1:4012970-4012989 None:intergenic 40.0%
GAGCTAGTTGCATATTATGG+TGG + chr5.1:4013715-4013734 MS.gene015568:intron 40.0%
GCAAATAAGGAGAGAGAGAA+AGG + chr5.1:4013298-4013317 MS.gene015568:CDS 40.0%
GCAACATCAAAATAACCCAG+AGG - chr5.1:4012158-4012177 None:intergenic 40.0%
GCTTGAGGAGATAGCAAATA+AGG + chr5.1:4013285-4013304 MS.gene015568:CDS 40.0%
GTATGAAAATGATTCCCTCG+AGG + chr5.1:4014102-4014121 MS.gene015568:CDS 40.0%
GTTATCGTCCTTAACACAAG+CGG - chr5.1:4011814-4011833 None:intergenic 40.0%
TAGAGAAAAGGCAGAAGAAG+AGG + chr5.1:4013048-4013067 MS.gene015568:CDS 40.0%
TCATCCATATCAACAGGATC+GGG - chr5.1:4011912-4011931 None:intergenic 40.0%
TCATTCAAAGGGAACTTCCT+AGG + chr5.1:4013107-4013126 MS.gene015568:CDS 40.0%
TGAGAAGTAAGCTGGATGAT+GGG + chr5.1:4014182-4014201 MS.gene015568:CDS 40.0%
TGAGAATGTGAGAAGTAAGC+TGG + chr5.1:4014174-4014193 MS.gene015568:CDS 40.0%
TGATGTTGCTGATGAGGATA+GGG + chr5.1:4012169-4012188 MS.gene015568:CDS 40.0%
TGCAGATTTGCAAACGAGTA+GGG - chr5.1:4011586-4011605 None:intergenic 40.0%
TGCTTCAACAAAATCCTCGA+GGG - chr5.1:4014119-4014138 None:intergenic 40.0%
TGGGTGTCTGTGGATAATTA+GGG - chr5.1:4012508-4012527 None:intergenic 40.0%
TGGTTTCAAAGGGGTGAAAA+GGG - chr5.1:4013624-4013643 None:intergenic 40.0%
TTCTTAAAGGAGTCATGGCT+TGG - chr5.1:4012532-4012551 None:intergenic 40.0%
TTGATGTTGCTGATGAGGAT+AGG + chr5.1:4012168-4012187 MS.gene015568:CDS 40.0%
TTGCAGATTTGCAAACGAGT+AGG - chr5.1:4011587-4011606 None:intergenic 40.0%
TTGGGTGTCTGTGGATAATT+AGG - chr5.1:4012509-4012528 None:intergenic 40.0%
! GATGATTCGACTTGAGAAGA+AGG + chr5.1:4014213-4014232 MS.gene015568:CDS 40.0%
! GCAAGGGATGGTTTTTCTTT+TGG + chr5.1:4012788-4012807 MS.gene015568:CDS 40.0%
! GCATCCTTCAGATTTTTCTG+GGG + chr5.1:4012664-4012683 MS.gene015568:CDS 40.0%
! GTTCTCTGAGGAGTTCTTAA+AGG - chr5.1:4012545-4012564 None:intergenic 40.0%
! TGTTCACCTTTTCACCCTTT+GGG + chr5.1:4013477-4013496 MS.gene015568:intron 40.0%
! TTGTTCACCTTTTCACCCTT+TGG + chr5.1:4013476-4013495 MS.gene015568:intron 40.0%
!! ACTCATTTTTAGGCTGTGGA+AGG - chr5.1:4012946-4012965 None:intergenic 40.0%
!! TGGTACTCATTTTTAGGCTG+TGG - chr5.1:4012950-4012969 None:intergenic 40.0%
AAAAGGCAGAAGAAGAGGCA+CGG + chr5.1:4013053-4013072 MS.gene015568:CDS 45.0%
AAGAGAGAATTGAAGGCTGC+TGG + chr5.1:4012056-4012075 MS.gene015568:CDS 45.0%
AATCTGAAGGATGCAACTCC+GGG - chr5.1:4012658-4012677 None:intergenic 45.0%
AATTTCCTAGGGTCATCACC+AGG - chr5.1:4011843-4011862 None:intergenic 45.0%
ACCCACAATGGTAGCACTAA+TGG - chr5.1:4011745-4011764 None:intergenic 45.0%
AGAGAGAATTGAAGGCTGCT+GGG + chr5.1:4012057-4012076 MS.gene015568:CDS 45.0%
AGCATTGTCATGCTCCAGTA+AGG - chr5.1:4013257-4013276 None:intergenic 45.0%
AGCCGACGAGATGATAAGAA+AGG + chr5.1:4013222-4013241 MS.gene015568:CDS 45.0%
AGGCTGCTGGGATTGATATA+AGG + chr5.1:4012069-4012088 MS.gene015568:CDS 45.0%
AGGTGTTTGGAAAAACACCG+AGG + chr5.1:4011500-4011519 MS.gene015568:CDS 45.0%
AGTATCTTCGTGAGGCAATG+GGG + chr5.1:4014080-4014099 MS.gene015568:CDS 45.0%
AGTCCACTCAGCCTTCTTAA+TGG - chr5.1:4011649-4011668 None:intergenic 45.0%
ATAGTGCTAGACTCGAGCTA+CGG + chr5.1:4012876-4012895 MS.gene015568:CDS 45.0%
ATATGTAGCTCATCCCTGAG+AGG - chr5.1:4012833-4012852 None:intergenic 45.0%
CAATGCTAAGTATCCGCTTG+AGG + chr5.1:4013270-4013289 MS.gene015568:CDS 45.0%
CACTCAGCCTTCTTAATGGA+AGG - chr5.1:4011645-4011664 None:intergenic 45.0%
CAGAGAACACCAGCTAGTAA+AGG + chr5.1:4012557-4012576 MS.gene015568:CDS 45.0%
CAGTATCTTCGTGAGGCAAT+GGG + chr5.1:4014079-4014098 MS.gene015568:CDS 45.0%
CATTGCCTCACGAAGATACT+GGG - chr5.1:4014080-4014099 None:intergenic 45.0%
CCTAATAAGCTCCAGAGATG+CGG - chr5.1:4013140-4013159 None:intergenic 45.0%
CTAATAAGCTCCAGAGATGC+GGG - chr5.1:4013139-4013158 None:intergenic 45.0%
CTAATGGTTCTCCACTGAGT+AGG - chr5.1:4011714-4011733 None:intergenic 45.0%
CTCAGTGGAGAACCATTAGT+TGG + chr5.1:4011715-4011734 MS.gene015568:CDS 45.0%
CTGGGATTGATATAAGGCAG+CGG + chr5.1:4012075-4012094 MS.gene015568:CDS 45.0%
CTTCCATTAAGAAGGCTGAG+TGG + chr5.1:4011643-4011662 MS.gene015568:CDS 45.0%
GATCCAAACGAGCAGCAAAT+GGG + chr5.1:4013320-4013339 MS.gene015568:CDS 45.0%
GGTTATGCCATTGACCTTGT+GGG + chr5.1:4012437-4012456 MS.gene015568:CDS 45.0%
GGTTTCAAAGGGGTGAAAAG+GGG - chr5.1:4013623-4013642 None:intergenic 45.0%
GTAAAGCTCGTTGGTATGAG+TGG + chr5.1:4011613-4011632 MS.gene015568:CDS 45.0%
GTCAATGGCATAACCCAACT+TGG - chr5.1:4012432-4012451 None:intergenic 45.0%
GTGACCCCAGAAAAATCTGA+AGG - chr5.1:4012671-4012690 None:intergenic 45.0%
GTGAGAAGTAAGCTGGATGA+TGG + chr5.1:4014181-4014200 MS.gene015568:CDS 45.0%
GTGCTTCAACAAAATCCTCG+AGG - chr5.1:4014120-4014139 None:intergenic 45.0%
GTGGTTTCAAAGGGGTGAAA+AGG - chr5.1:4013625-4013644 None:intergenic 45.0%
TCCTCTTCAATCTTCTCCTC+GGG - chr5.1:4013010-4013029 None:intergenic 45.0%
TCTTCTATGACAGGGATAGC+AGG - chr5.1:4013346-4013365 None:intergenic 45.0%
TCTTGATCGGAAATCTGAGG+TGG - chr5.1:4012395-4012414 None:intergenic 45.0%
TGAAAATTTGGCCAGGCTGA+GGG + chr5.1:4012601-4012620 MS.gene015568:CDS 45.0%
TGAGAAAGCAAGACGTTGCA+AGG + chr5.1:4012267-4012286 MS.gene015568:CDS 45.0%
TGGAAGCTGAAAATTTGGCC+AGG + chr5.1:4012594-4012613 MS.gene015568:CDS 45.0%
TGGGGTCACTCCTAAGAAAA+AGG + chr5.1:4012682-4012701 MS.gene015568:CDS 45.0%
TTACTAGCTGGTGTTCTCTG+AGG - chr5.1:4012557-4012576 None:intergenic 45.0%
TTCTGGGTCATTCAGCTTCT+TGG - chr5.1:4012339-4012358 None:intergenic 45.0%
! GTTCACCTTTTCACCCTTTG+GGG + chr5.1:4013478-4013497 MS.gene015568:intron 45.0%
! TCTTTTGGCATGACTCCGAA+GGG + chr5.1:4012803-4012822 MS.gene015568:CDS 45.0%
! TTCTTTTGGCATGACTCCGA+AGG + chr5.1:4012802-4012821 MS.gene015568:CDS 45.0%
!! AAAGGAGCTTCTAGCCTTAC+TGG + chr5.1:4013240-4013259 MS.gene015568:CDS 45.0%
!! AAAGGAGTCATGGCTTGGTT+GGG - chr5.1:4012527-4012546 None:intergenic 45.0%
!! AAGTAAGCTGGATGATGGGA+AGG + chr5.1:4014186-4014205 MS.gene015568:CDS 45.0%
!! TAAAGGAGTCATGGCTTGGT+TGG - chr5.1:4012528-4012547 None:intergenic 45.0%
!! TTTCACCCCTTTGAAACCAC+TGG + chr5.1:4013625-4013644 MS.gene015568:intron 45.0%
!! AAAATTAAATAGAAAAAATT+TGG + chr5.1:4013659-4013678 MS.gene015568:intron 5.0%
ACCCTAGGAAATTGCGTCCA+GGG + chr5.1:4011850-4011869 MS.gene015568:CDS 50.0%
ACTGTTAGGAGGAGAGAACC+CGG + chr5.1:4012637-4012656 MS.gene015568:CDS 50.0%
AGAAACAGCTTGAGGAAGCG+AGG + chr5.1:4012012-4012031 MS.gene015568:CDS 50.0%
AGAGGAGGCCTCTTCTCAAA+CGG - chr5.1:4012140-4012159 None:intergenic 50.0%
AGCTAGGGAGAAACAGCTTG+AGG + chr5.1:4012004-4012023 MS.gene015568:CDS 50.0%
CCAGTATCTTCGTGAGGCAA+TGG + chr5.1:4014078-4014097 MS.gene015568:CDS 50.0%
CCATTGCCTCACGAAGATAC+TGG - chr5.1:4014081-4014100 None:intergenic 50.0%
CCTTACTCCCAGAAGTGGTA+TGG + chr5.1:4012760-4012779 MS.gene015568:CDS 50.0%
CTAAGCTTACGCCTACTCAG+TGG + chr5.1:4011700-4011719 MS.gene015568:CDS 50.0%
CTCCTTCGCAGTGTCTTGAA+CGG + chr5.1:4011769-4011788 MS.gene015568:CDS 50.0%
CTGAAAATTTGGCCAGGCTG+AGG + chr5.1:4012600-4012619 MS.gene015568:CDS 50.0%
GAGTCTCAGACACCACTGTT+AGG + chr5.1:4012623-4012642 MS.gene015568:CDS 50.0%
GCAGGCTTCGATTCAGGATT+CGG - chr5.1:4011885-4011904 None:intergenic 50.0%
GGATCCAAACGAGCAGCAAA+TGG + chr5.1:4013319-4013338 MS.gene015568:CDS 50.0%
GGATTGATATAAGGCAGCGG+AGG + chr5.1:4012078-4012097 MS.gene015568:CDS 50.0%
GGGTTATGCCATTGACCTTG+TGG + chr5.1:4012436-4012455 MS.gene015568:CDS 50.0%
GTCTCCGTCAGCTCTTATCA+AGG - chr5.1:4013167-4013186 None:intergenic 50.0%
GTGTACCCCAAAGGGTGAAA+AGG - chr5.1:4013486-4013505 None:intergenic 50.0%
TACCGTTCAAGACACTGCGA+AGG - chr5.1:4011774-4011793 None:intergenic 50.0%
TCTCAGACACCACTGTTAGG+AGG + chr5.1:4012626-4012645 MS.gene015568:CDS 50.0%
TGAAGCCCAGTATCTTCGTG+AGG + chr5.1:4014072-4014091 MS.gene015568:CDS 50.0%
TGCTTTCCGAAGCATGTGCT+CGG + chr5.1:4011946-4011965 MS.gene015568:CDS 50.0%
TGTTGCTGATGAGGATAGGG+AGG + chr5.1:4012172-4012191 MS.gene015568:CDS 50.0%
TTGATATAAGGCAGCGGAGG+AGG + chr5.1:4012081-4012100 MS.gene015568:CDS 50.0%
TTGGCATGCAGAATAGCAGC+CGG - chr5.1:4012320-4012339 None:intergenic 50.0%
TTTGAGAAGAGGCCTCCTCT+GGG + chr5.1:4012140-4012159 MS.gene015568:CDS 50.0%
! ATGAACCTGGTGATGACCCT+AGG + chr5.1:4011835-4011854 MS.gene015568:CDS 50.0%
! CCATACCACTTCTGGGAGTA+AGG - chr5.1:4012763-4012782 None:intergenic 50.0%
! TGATCGGAAATCTGAGGTGG+TGG - chr5.1:4012392-4012411 None:intergenic 50.0%
!! ATCTCGTCGGCTTGCTCAAT+AGG - chr5.1:4013214-4013233 None:intergenic 50.0%
!! CCGCATCTCTGGAGCTTATT+AGG + chr5.1:4013137-4013156 MS.gene015568:CDS 50.0%
!! TCTCGTCGGCTTGCTCAATA+GGG - chr5.1:4013213-4013232 None:intergenic 50.0%
AACAGCTTGAGGAAGCGAGG+AGG + chr5.1:4012015-4012034 MS.gene015568:CDS 55.0%
ACGAGTAGCACTGCTGCCTT+CGG - chr5.1:4012477-4012496 None:intergenic 55.0%
AGAAGATGCTGAAGAGCCCG+AGG + chr5.1:4012991-4013010 MS.gene015568:CDS 55.0%
AGCCAACCGAGCACATGCTT+CGG - chr5.1:4011955-4011974 None:intergenic 55.0%
AGCGGAGGAGGAAAAGGAGA+GGG + chr5.1:4012093-4012112 MS.gene015568:CDS 55.0%
AGTAAGGCCTGCACTTCCAG+GGG - chr5.1:4012747-4012766 None:intergenic 55.0%
ATAAGCTCCAGAGATGCGGG+AGG - chr5.1:4013136-4013155 None:intergenic 55.0%
ATCGCTGCCCACAAGGTCAA+TGG - chr5.1:4012447-4012466 None:intergenic 55.0%
CCCCTGGACGCAATTTCCTA+GGG - chr5.1:4011854-4011873 None:intergenic 55.0%
CCCTAGGAAATTGCGTCCAG+GGG + chr5.1:4011851-4011870 MS.gene015568:CDS 55.0%
CCTTAACACAAGCGGCGTCA+AGG - chr5.1:4011806-4011825 None:intergenic 55.0%
CCTTGACGCCGCTTGTGTTA+AGG + chr5.1:4011803-4011822 MS.gene015568:CDS 55.0%
GACCCTAGGAAATTGCGTCC+AGG + chr5.1:4011849-4011868 MS.gene015568:CDS 55.0%
GAGTAAGGCCTGCACTTCCA+GGG - chr5.1:4012748-4012767 None:intergenic 55.0%
GCCCGAGGAGAAGATTGAAG+AGG + chr5.1:4013006-4013025 MS.gene015568:CDS 55.0%
GCGACCCGATCCTGTTGATA+TGG + chr5.1:4011905-4011924 MS.gene015568:CDS 55.0%
GCTTGCTCAATAGGGGTTGG+TGG - chr5.1:4013205-4013224 None:intergenic 55.0%
GGATTCGGATCAATCTCCCC+TGG - chr5.1:4011870-4011889 None:intergenic 55.0%
GGGTTCTCTCCTCCTAACAG+TGG - chr5.1:4012638-4012657 None:intergenic 55.0%
GTTTGAGAAGAGGCCTCCTC+TGG + chr5.1:4012139-4012158 MS.gene015568:CDS 55.0%
TAAGGCAGCGGAGGAGGAAA+AGG + chr5.1:4012087-4012106 MS.gene015568:CDS 55.0%
TCCCCTGGACGCAATTTCCT+AGG - chr5.1:4011855-4011874 None:intergenic 55.0%
TCCCTGAGAGGAGTTCCCTT+CGG - chr5.1:4012821-4012840 None:intergenic 55.0%
TCCGAAGGGAACTCCTCTCA+GGG + chr5.1:4012817-4012836 MS.gene015568:CDS 55.0%
TGAGTTCATCGCTGCCCACA+AGG - chr5.1:4012454-4012473 None:intergenic 55.0%
TGCTGATGAGGATAGGGAGG+TGG + chr5.1:4012175-4012194 MS.gene015568:CDS 55.0%
TGGCATGCAGAATAGCAGCC+GGG - chr5.1:4012319-4012338 None:intergenic 55.0%
TTCCGAAGCATGTGCTCGGT+TGG + chr5.1:4011950-4011969 MS.gene015568:CDS 55.0%
TTGCAGAGGGAGTCAGCAGT+GGG - chr5.1:4012724-4012743 None:intergenic 55.0%
! AGAAGAAGAGGCACGGCAGA+AGG + chr5.1:4013060-4013079 MS.gene015568:CDS 55.0%
! AGGCCCATTTGCTGCTCGTT+TGG - chr5.1:4013326-4013345 None:intergenic 55.0%
! CGAAGGAGTACGACCCACAA+TGG - chr5.1:4011757-4011776 None:intergenic 55.0%
! GCTCGGTTGGCTAACACGAA+AGG + chr5.1:4011963-4011982 MS.gene015568:CDS 55.0%
! TCGGCTTGCTCAATAGGGGT+TGG - chr5.1:4013208-4013227 None:intergenic 55.0%
!! ATGGCTTGGTTGGGTGTCTG+TGG - chr5.1:4012518-4012537 None:intergenic 55.0%
!! CTCGTCGGCTTGCTCAATAG+GGG - chr5.1:4013212-4013231 None:intergenic 55.0%
CAGCGGAGGAGGAAAAGGAG+AGG + chr5.1:4012092-4012111 MS.gene015568:CDS 60.0%
CTCCGAAGGGAACTCCTCTC+AGG + chr5.1:4012816-4012835 MS.gene015568:CDS 60.0%
GAGGGAGTCAGCAGTGGGAT+TGG - chr5.1:4012719-4012738 None:intergenic 60.0%
GCACTTCCAGGGGTTGCAGA+GGG - chr5.1:4012737-4012756 None:intergenic 60.0%
GCAGGCCTTACTCCCAGAAG+TGG + chr5.1:4012755-4012774 MS.gene015568:CDS 60.0%
GGAGTAAGGCCTGCACTTCC+AGG - chr5.1:4012749-4012768 None:intergenic 60.0%
GGCAGCGATGAACTCACCGA+AGG + chr5.1:4012458-4012477 MS.gene015568:CDS 60.0%
GGCATGCAGAATAGCAGCCG+GGG - chr5.1:4012318-4012337 None:intergenic 60.0%
GTTGCAGAGGGAGTCAGCAG+TGG - chr5.1:4012725-4012744 None:intergenic 60.0%
TCCCAGAAGTGGTATGGCGC+CGG + chr5.1:4012766-4012785 MS.gene015568:CDS 60.0%
TGCACTTCCAGGGGTTGCAG+AGG - chr5.1:4012738-4012757 None:intergenic 60.0%
TGCAGAGAGGCAAGATGCCC+CGG + chr5.1:4012298-4012317 MS.gene015568:CDS 60.0%
! GGCTGAGTGGACTCGAGAAG+AGG + chr5.1:4011656-4011675 MS.gene015568:CDS 60.0%
! TCTGCAACCCCTGGAAGTGC+AGG + chr5.1:4012737-4012756 MS.gene015568:CDS 60.0%
! TGTCTGAGACTCCCTCAGCC+TGG - chr5.1:4012615-4012634 None:intergenic 60.0%
!! AAGTGGTATGGCGCCGGCAA+GGG + chr5.1:4012772-4012791 MS.gene015568:CDS 60.0%
AGAGATGCGGGAGGAGGCCT+AGG - chr5.1:4013127-4013146 None:intergenic 65.0%
AGCTCCAGAGATGCGGGAGG+AGG - chr5.1:4013133-4013152 None:intergenic 65.0%
CTGACTCCCTCTGCAACCCC+TGG + chr5.1:4012728-4012747 MS.gene015568:CDS 65.0%
GCCGGCGCCATACCACTTCT+GGG - chr5.1:4012770-4012789 None:intergenic 65.0%
GGTCGCGCAGGCTTCGATTC+AGG - chr5.1:4011891-4011910 None:intergenic 65.0%
TAGGCCTCCTCCCGCATCTC+TGG + chr5.1:4013126-4013145 MS.gene015568:CDS 65.0%
TCAACAGGATCGGGTCGCGC+AGG - chr5.1:4011903-4011922 None:intergenic 65.0%
TGCCGGCGCCATACCACTTC+TGG - chr5.1:4012771-4012790 None:intergenic 65.0%
!! GAAGTGGTATGGCGCCGGCA+AGG + chr5.1:4012771-4012790 MS.gene015568:CDS 65.0%
!! GGTATGGCGCCGGCAAGGGA+TGG + chr5.1:4012776-4012795 MS.gene015568:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 4011492 4014276 4011492 ID=MS.gene015568
chr5.1 mRNA 4011492 4014276 4011492 ID=MS.gene015568.t1;Parent=MS.gene015568
chr5.1 exon 4011492 4013390 4011492 ID=MS.gene015568.t1.exon1;Parent=MS.gene015568.t1
chr5.1 CDS 4011492 4013390 4011492 ID=cds.MS.gene015568.t1;Parent=MS.gene015568.t1
chr5.1 exon 4014052 4014276 4014052 ID=MS.gene015568.t1.exon2;Parent=MS.gene015568.t1
chr5.1 CDS 4014052 4014276 4014052 ID=cds.MS.gene015568.t1;Parent=MS.gene015568.t1
Gene Sequence

>MS.gene015568

ATGAGCATAGGTGTTTGGAAAAACACCGAGGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCATATCTCGTCCCTACTCGTTTGCAAATCTGCAAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAGGCTGAGTGGACTCGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTACGCCTACTCAGTGGAGAACCATTAGTTGGAGAACCATTAGTGCTACCATTGTGGGTCGTACTCCTTCGCAGTGTCTTGAACGGTATGAGAAACTCCTTGACGCCGCTTGTGTTAAGGACGATAACTATGAACCTGGTGATGACCCTAGGAAATTGCGTCCAGGGGAGATTGATCCGAATCCTGAATCGAAGCCTGCGCGACCCGATCCTGTTGATATGGATGAGTATGAGAAGGAGATGCTTTCCGAAGCATGTGCTCGGTTGGCTAACACGAAAGGTAAAAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAATTGAAGGCTGCTGGGATTGATATAAGGCAGCGGAGGAGGAAAAGGAGAGGGATTGATTATAATGCAGAAATTCCGTTTGAGAAGAGGCCTCCTCTGGGTTATTTTGATGTTGCTGATGAGGATAGGGAGGTGGAGCAGCATGCATTCCCTACTACTATAGAAGAACTTGAGGGGAAAAGAAGGATTGATGTTGAGGCTCAGTTGAGAAAGCAAGACGTTGCAAGGAATAAAATTGCAGAGAGGCAAGATGCCCCGGCTGCTATTCTGCATGCCAAGAAGCTGAATGACCCAGAAACAGTTAGAAAGAGATCGAAACTGATGCTTCCACCACCTCAGATTTCCGATCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCCATTGACCTTGTGGGCAGCGATGAACTCACCGAAGGCAGCAGTGCTACTCGTGCTCTTCTCCCTAATTATCCACAGACACCCAACCAAGCCATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACACCACTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACATTCCAATCCCACTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCCAGAAGTGGTATGGCGCCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCGAAGGGAACTCCTCTCAGGGATGAGCTACATATCAATGAAGATATGGAGATGCGTGATAGTGCTAGACTCGAGCTACGGAGACAAGCTGATATGAAAAAAAGTCTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAATTCAAGAAGATGCTGAAGAGCCCGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATGGCTAGAGAAAAGGCAGAAGAAGAGGCACGGCAGAAGGCATTACTTAGAAAACGATCAAAAGTCATTCAAAGGGAACTTCCTAGGCCTCCTCCCGCATCTCTGGAGCTTATTAGGAACTCCTTGATAAGAGCTGACGGAGACAAAAGTTCATTTGTTCCACCAACCCCTATTGAGCAAGCCGACGAGATGATAAGAAAGGAGCTTCTAGCCTTACTGGAGCATGACAATGCTAAGTATCCGCTTGAGGAGATAGCAAATAAGGAGAGAGAGAAAGGATCCAAACGAGCAGCAAATGGGCCTGCTATCCCTGTCATAGAAGATTATCAGGAGGACGAGATGAAATCTGTATGTTTTTACTAATTTATCTGCTCACCTTTAATTTTATTTTTATGCCTTTTAATTCGCTTTTCTTCATTTGCTACTAAGTAGCTTGTTCACCTTTTCACCCTTTGGGGTACACAACATGATTTTTCATTTAGATGATACACATGCTTTTTCTGATGATCTTGACCTTGAAATTATTAGTACTTTGTCCGATTATTAATTACTTGGCATCATCATTTTTATGCTGAAACCCCTTTTCACCCCTTTGAAACCACTGGAATCTTATGTAAAAATTAAATAGAAAAAATTTGGACATCTTTTTAATTTGTGTATCATCTCCTTTATGAGCTAGTTGCATATTATGGTGGTATGTAATATGTATTGTATCGTCCTTGTTTTTTTTCAGTTATAATCATTTGATTAATTAGGTTGAAGTTAGTTTTAGTTTCTTGCAATTGTTGTTCTCTATTTCTTTCGTTTTTGTAACAAGTGATTCTTCAATTGCCTTTTACAACATTTATTCCCTATTTACCTTAATTCGCCGAATGATAGTAATACAAACTTCCAAACTGCTTGTTAATTATTATTTGACTCCTTAAATTTGACTATGGAGATGAGCTTGTACGTTGATGAATGATAATATCTGTGTTGACTGTTATTTATTATTATCTGTTCTCAATAGGCTGATCAGTTGATAAAAGATGAAGCCCAGTATCTTCGTGAGGCAATGGGGTATGAAAATGATTCCCTCGAGGATTTTGTTGAAGCACATACAACATGCATTAATGATTTGCAGAATGAATTTGAGAATGTGAGAAGTAAGCTGGATGATGGGAAGGAGAAGATGATTCGACTTGAGAAGAAGGTTACATTACTCACGCAAGGGTACGAGTTATGCTACTGCTAA
Protein sequence

>MS.gene015568.t1

MSIGVWKNTEDEILKAAVMKYGKNQWAHISSLLVCKSAKQCKARWYEWLDPSIKKAEWTREEDEKLLHLAKLTPTQWRTISWRTISATIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEYEKEMLSEACARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPLGYFDVADEDREVEQHAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHAKKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYAIDLVGSDELTEGSSATRALLPNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHIPIPLLTPSATPGSAGLTPRSGMAPARDGFSFGMTPKGTPLRDELHINEDMEMRDSARLELRRQADMKKSLRSGLSSLPQPKNEYQIVMQPIQEDAEEPEEKIEEDMSDRMAREKAEEEARQKALLRKRSKVIQRELPRPPPASLELIRNSLIRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPLEEIANKEREKGSKRAANGPAIPVIEDYQEDEMKSADQLIKDEAQYLREAMGYENDSLEDFVEAHTTCINDLQNEFENVRSKLDDGKEKMIRLEKKVTLLTQGYELCYC