AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072798

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072798.t1 MTR_7g115550 95.172 725 29 1 4 728 8 726 0.0 1336
MS.gene072798.t1 MTR_7g115550 95.192 728 29 1 4 731 8 729 0.0 1333
MS.gene072798.t1 MTR_5g010470 87.895 727 37 4 4 730 8 683 0.0 1187
MS.gene072798.t1 MTR_7g061330 36.364 110 64 2 4 112 62 166 7.37e-13 72.4
MS.gene072798.t1 MTR_7g461410 36.364 110 64 2 4 112 62 166 7.37e-13 72.4
MS.gene072798.t1 MTR_7g061330 36.364 110 64 2 4 112 26 130 9.11e-13 72.0
MS.gene072798.t1 MTR_3g110028 38.462 78 48 0 4 81 86 163 1.99e-11 68.2
MS.gene072798.t1 MTR_6g027340 40.789 76 45 0 6 81 19 94 2.55e-11 63.9
MS.gene072798.t1 MTR_6g027360 40.741 81 48 0 1 81 76 156 3.70e-11 65.5
MS.gene072798.t1 MTR_8g468380 32.353 102 64 1 3 104 22 118 3.78e-11 66.2
MS.gene072798.t1 MTR_7g451170 38.750 80 49 0 4 83 192 271 5.04e-11 65.9
MS.gene072798.t1 MTR_1g026870 32.727 110 68 2 4 112 34 138 8.60e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072798.t1 AT1G09770 76.066 727 163 4 4 727 8 726 0.0 1070
MS.gene072798.t1 AT3G18100 35.294 102 59 2 4 104 547 642 1.81e-13 74.7
MS.gene072798.t1 AT3G18100 34.653 101 61 2 6 106 498 593 2.96e-11 67.4
MS.gene072798.t1 AT3G18100 35.294 102 59 2 4 104 499 594 3.25e-13 73.9
MS.gene072798.t1 AT3G18100 34.653 101 61 2 6 106 450 545 5.90e-11 66.6
MS.gene072798.t1 AT3G18100 35.294 102 59 2 4 104 386 481 4.03e-13 73.6
MS.gene072798.t1 AT3G18100 34.653 101 61 2 6 106 337 432 7.85e-11 65.9
MS.gene072798.t1 AT5G02320 34.862 109 67 1 4 112 76 180 4.31e-13 73.2
MS.gene072798.t1 AT5G02320 34.862 109 67 1 4 112 76 180 4.31e-13 73.2
MS.gene072798.t1 AT5G02320 34.862 109 67 1 4 112 16 120 4.72e-13 72.8
MS.gene072798.t1 AT3G18100 35.294 102 59 2 4 104 334 429 5.20e-13 72.8
MS.gene072798.t1 AT5G11510 35.455 110 65 2 4 112 30 134 4.39e-12 70.5
MS.gene072798.t1 AT5G11510 35.455 110 65 2 4 112 30 134 4.39e-12 70.5
MS.gene072798.t1 AT5G11510 35.455 110 65 2 4 112 30 134 4.39e-12 70.5
MS.gene072798.t1 AT5G11510 35.455 110 65 2 4 112 30 134 9.09e-12 69.3
MS.gene072798.t1 AT5G11510 35.455 110 65 2 4 112 30 134 9.32e-12 68.9
MS.gene072798.t1 AT4G18770 38.889 90 50 1 4 93 218 302 1.42e-11 67.8
MS.gene072798.t1 AT3G09370 34.545 110 66 2 4 112 84 188 1.70e-11 67.8
MS.gene072798.t1 AT3G09370 34.545 110 66 2 4 112 79 183 1.79e-11 67.8
MS.gene072798.t1 AT4G33450 38.462 78 48 0 4 81 20 97 2.11e-11 65.5
MS.gene072798.t1 AT3G09370 34.545 110 66 2 4 112 92 196 2.47e-11 67.4
MS.gene072798.t1 AT5G17800 40.000 80 48 0 2 81 92 171 9.00e-11 64.3
MS.gene072798.t1 AT5G40360 37.179 78 49 0 4 81 159 236 9.03e-11 64.7

Find 212 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTCTTTCTAACTGTTTC+TGG 0.008572 5.3:+4072005 None:intergenic
TTCTGGGTCATTCAGCTTCT+TGG 0.153986 5.3:+4072022 None:intergenic
TGCCGGCGCCATACCACTTC+TGG 0.177175 5.3:+4071590 None:intergenic
CAGCATCTCTGGAGCTTATT+AGG 0.185268 5.3:-4071221 MS.gene072798:CDS
ATTTCATAACAGCAGCTTTC+AGG 0.225007 5.3:+4072828 None:intergenic
GGAGTAAGGCCTGCACTTCC+AGG 0.240853 5.3:+4071612 None:intergenic
TTGGGTGTCTGTGGATAATT+AGG 0.241982 5.3:+4071852 None:intergenic
CATGATGGAAGCTGAAAATT+TGG 0.248037 5.3:-4071769 MS.gene072798:CDS
GTTCTCTGAGGAGTTCTTAA+AGG 0.283026 5.3:+4071816 None:intergenic
AAAGCTGCTGTTATGAAATA+TGG 0.287568 5.3:-4072824 MS.gene072798:CDS
GAATTGGTTGCATCACTATC+TGG 0.302904 5.3:+4071391 None:intergenic
AAAGGAGCTTCTAGCCTTAC+TGG 0.309592 5.3:-4071118 MS.gene072798:CDS
GGTCGCGCAGGCTTCGATTC+AGG 0.310060 5.3:+4072470 None:intergenic
AGTCCACTCAGTCTTCTTAA+TGG 0.314486 5.3:+4072712 None:intergenic
CCCTGTCATAGAAGATTATC+AGG 0.315605 5.3:-4071007 MS.gene072798:CDS
CCATTGCCTCACGAAGATAC+TGG 0.317289 5.3:+4070288 None:intergenic
TGGGGTCACTCCTAAGAAAA+AGG 0.319124 5.3:-4071676 MS.gene072798:CDS
TCTTCAGCATCTTCTTGAAT+TGG 0.331097 5.3:+4071375 None:intergenic
GTTTGAGAAGAGGCCTCCTC+TGG 0.334561 5.3:-4072219 MS.gene072798:CDS
ATCTCTTTCTAACTGTTTCT+GGG 0.335857 5.3:+4072006 None:intergenic
ATCTCGTCGGCTTGCTCAAT+AGG 0.342238 5.3:+4071147 None:intergenic
TCAAGTTCTTCTATAGTAGT+AGG 0.344179 5.3:+4072146 None:intergenic
CTCCGAAGGGAACTCCTCTC+AGG 0.358383 5.3:-4071542 MS.gene072798:CDS
TAGGCCTCCTTCAGCATCTC+TGG 0.371727 5.3:-4071232 MS.gene072798:CDS
GCTTGAGGAGATAGCAAATA+AGG 0.373696 5.3:-4071073 MS.gene072798:CDS
CCAAAATGAGCATAGGTGTT+TGG 0.385146 5.3:-4072871 None:intergenic
TCTCGTCGGCTTGCTCAATA+GGG 0.387795 5.3:+4071148 None:intergenic
AGGCCCATTTGCTGCTCGTT+TGG 0.388358 5.3:+4071035 None:intergenic
TCAGATTTCCGATCAAGAAT+TGG 0.389053 5.3:-4071961 MS.gene072798:CDS
GCAGGCTTCGATTCAGGATT+CGG 0.393602 5.3:+4072476 None:intergenic
CCTTGACGCCGCTTGTGTTA+AGG 0.393639 5.3:-4072555 MS.gene072798:CDS
AGGCTGCTGGGATTGATATA+AGG 0.409355 5.3:-4072289 MS.gene072798:CDS
TCTGCAACCCCTGGAAGTGC+AGG 0.411721 5.3:-4071621 MS.gene072798:CDS
TATGGTCTATCAAGTGTTGC+TGG 0.416170 5.3:-4070179 MS.gene072798:CDS
GCCGGCGCCATACCACTTCT+GGG 0.416494 5.3:+4071591 None:intergenic
GGATCCAAACGAGCAGCAAA+TGG 0.417377 5.3:-4071039 MS.gene072798:CDS
AAAGGAGTCATGGCTTGGTT+GGG 0.420072 5.3:+4071834 None:intergenic
GCTACATATCAATGAAGATA+TGG 0.420115 5.3:-4071514 MS.gene072798:CDS
ACCCACAATGGTAGCACTAA+TGG 0.421586 5.3:+4072616 None:intergenic
GAGGGAGTCGGCAGTGGGAT+TGG 0.422499 5.3:+4071642 None:intergenic
TAAGGCAGCGGAGGAGGAAA+AGG 0.424744 5.3:-4072271 MS.gene072798:CDS
TTGGATGAAATTGCCAAGTT+GGG 0.429250 5.3:-4071942 MS.gene072798:CDS
AGCTTTCAGGATTTCATCCT+CGG 0.436489 5.3:+4072841 None:intergenic
CAGTATCTTCGTGAGGCAAT+GGG 0.437430 5.3:-4070287 MS.gene072798:CDS
GTTGCAGAGGGAGTCGGCAG+TGG 0.438871 5.3:+4071636 None:intergenic
ATTGGATGAAATTGCCAAGT+TGG 0.444138 5.3:-4071943 MS.gene072798:CDS
AAGAACTTGAGGGGAAAAGA+AGG 0.444403 5.3:-4072133 MS.gene072798:CDS
GCAAATAAGGAGAGAGAGAA+AGG 0.446065 5.3:-4071060 MS.gene072798:CDS
ACTAATGGTTCTCCAACTAA+TGG 0.446782 5.3:+4072631 None:intergenic
CCATACCACTTCTGGGAGTA+AGG 0.448683 5.3:+4071598 None:intergenic
ATCCTCTTCAATCTTCTCCT+CGG 0.449369 5.3:+4071350 None:intergenic
AAGAGAGAATTGAAGGCTGC+TGG 0.451049 5.3:-4072302 MS.gene072798:CDS
TCCTGATAATCTTCTATGAC+AGG 0.451422 5.3:+4071006 None:intergenic
TTGATAGACCATATGTGTTA+CGG 0.451766 5.3:+4070189 None:intergenic
CCGACTCCCTCTGCAACCCC+TGG 0.454253 5.3:-4071630 MS.gene072798:CDS
TCATACTCATCCATATCAAC+AGG 0.454291 5.3:+4072443 None:intergenic
TGATAGACCATATGTGTTAC+GGG 0.454903 5.3:+4070190 None:intergenic
TCCCCTGGACGCAATTTCCT+AGG 0.458724 5.3:+4072506 None:intergenic
TTTGATACCCGTAACACATA+TGG 0.465342 5.3:-4070197 MS.gene072798:CDS
CAGAAATTCCGTTTGAGAAG+AGG 0.469889 5.3:-4072229 MS.gene072798:CDS
TGCAGAGAGGCAAGATGCCC+CGG 0.470266 5.3:-4072060 MS.gene072798:CDS
TAAAGGAGTCATGGCTTGGT+TGG 0.470630 5.3:+4071833 None:intergenic
GAGTCTCAGACACCACTGTT+AGG 0.471291 5.3:-4071735 MS.gene072798:CDS
CTGAAAATTTGGCCAGGCTG+AGG 0.471566 5.3:-4071758 MS.gene072798:CDS
TTCTTAAAGGAGTCATGGCT+TGG 0.472192 5.3:+4071829 None:intergenic
AGAGATGCTGAAGGAGGCCT+AGG 0.472763 5.3:+4071234 None:intergenic
TGGCATGCAGAATAGCAGCC+GGG 0.473211 5.3:+4072042 None:intergenic
TTGATATAAGGCAGCGGAGG+AGG 0.474103 5.3:-4072277 MS.gene072798:CDS
AGCCAACCGAGCACATGCTT+CGG 0.476372 5.3:+4072406 None:intergenic
TGATGTTGCTGATGAGGATA+GGG 0.479449 5.3:-4072189 MS.gene072798:CDS
AATTTCATCCAATTCTTGAT+CGG 0.479560 5.3:+4071953 None:intergenic
GCGACCCGATCCTGTTGATA+TGG 0.481942 5.3:-4072453 MS.gene072798:CDS
AATCTGAAGGATGCAACTCC+GGG 0.484835 5.3:+4071703 None:intergenic
CCAGTATCTTCGTGAGGCAA+TGG 0.484875 5.3:-4070288 MS.gene072798:CDS
TGTCTGAGACTCCCTCAGCC+TGG 0.484905 5.3:+4071746 None:intergenic
AACGATCAAAAGTCATTCAA+AGG 0.485643 5.3:-4071263 MS.gene072798:CDS
TCCTCTTCAATCTTCTCCTC+GGG 0.488427 5.3:+4071351 None:intergenic
ACCATTAGTGCTACCATTGT+GGG 0.490042 5.3:-4072617 MS.gene072798:CDS
GAGTAAGGCCTGCACTTCCA+GGG 0.490905 5.3:+4071613 None:intergenic
AGAAGAAGAGGCACGGCAGA+AGG 0.493242 5.3:-4071298 MS.gene072798:CDS
CTCCTTTCTTATCATCTCGT+CGG 0.493278 5.3:+4071134 None:intergenic
TCATTCAAAGGGAACTTCCT+AGG 0.493709 5.3:-4071251 MS.gene072798:CDS
TGCACTTCCAGGGGTTGCAG+AGG 0.493979 5.3:+4071623 None:intergenic
AAATCTGAAGGATGCAACTC+CGG 0.494050 5.3:+4071702 None:intergenic
ACGAGTAGCACTGCTGCCTT+CGG 0.495690 5.3:+4071884 None:intergenic
TTCCGAAGCATGTGCTCGGT+TGG 0.496711 5.3:-4072408 MS.gene072798:CDS
TCTTCTATGACAGGGATAGC+AGG 0.496725 5.3:+4071015 None:intergenic
TTGCAGAGGGAGTCGGCAGT+GGG 0.497407 5.3:+4071637 None:intergenic
CTCAGTGGAGAACCATTAGT+TGG 0.497414 5.3:-4072643 MS.gene072798:CDS
GTCTCCGTCAGCTCTTATCA+AGG 0.499862 5.3:+4071194 None:intergenic
GAAGTGGTATGGCGCCGGCA+AGG 0.499877 5.3:-4071587 MS.gene072798:CDS
TGCTTTCCGAAGCATGTGCT+CGG 0.502006 5.3:-4072412 MS.gene072798:CDS
GTGAGAAGTAAGCTGGATGA+TGG 0.502979 5.3:-4070113 MS.gene072798:CDS
CTCATCCATATCAACAGGAT+CGG 0.503902 5.3:+4072448 None:intergenic
AAGTAAGCTGGATGATGGGA+AGG 0.506469 5.3:-4070108 MS.gene072798:CDS
ATAGCATCTCCTTTACTAGC+TGG 0.506651 5.3:+4071792 None:intergenic
AGAGGATATGTCTGATAGAA+TGG 0.507303 5.3:-4071334 MS.gene072798:CDS
TGCAGATTTGCAAACGAGTA+GGG 0.508803 5.3:+4072775 None:intergenic
TCCCTGAGAGGAGTTCCCTT+CGG 0.510495 5.3:+4071540 None:intergenic
GATGATTCGACTTGAGAAGA+AGG 0.511403 5.3:-4070081 MS.gene072798:CDS
TGATAGAATGGCTAGAGAAA+AGG 0.511992 5.3:-4071322 MS.gene072798:CDS
TTGGCATGCAGAATAGCAGC+CGG 0.514383 5.3:+4072041 None:intergenic
CAGAGAACACCAGCTAGTAA+AGG 0.515217 5.3:-4071801 MS.gene072798:CDS
AAGTGGTATGGCGCCGGCAA+GGG 0.516862 5.3:-4071586 MS.gene072798:CDS
CATTGCCTCACGAAGATACT+GGG 0.519621 5.3:+4070289 None:intergenic
TGGGTGTCTGTGGATAATTA+GGG 0.519886 5.3:+4071853 None:intergenic
TTGATGTTGCTGATGAGGAT+AGG 0.524642 5.3:-4072190 MS.gene072798:CDS
TCGGCTTGCTCAATAGGGGT+TGG 0.524733 5.3:+4071153 None:intergenic
TGAAAATTTGGCCAGGCTGA+GGG 0.525084 5.3:-4071757 MS.gene072798:CDS
GACCCTAGGAAATTGCGTCC+AGG 0.525314 5.3:-4072509 MS.gene072798:CDS
GGTTATGCCATGGACCTTGT+GGG 0.528280 5.3:-4071921 MS.gene072798:CDS
CAAGTTCTTCTATAGTAGTA+GGG 0.528361 5.3:+4072147 None:intergenic
AGAGGAGGCCTCTTCTCAAA+CGG 0.529206 5.3:+4072221 None:intergenic
TGAGAATGTGAGAAGTAAGC+TGG 0.529343 5.3:-4070120 MS.gene072798:CDS
GCTTGCTCAATAGGGGTTGG+TGG 0.531592 5.3:+4071156 None:intergenic
CACTCAGTCTTCTTAATGGA+AGG 0.532258 5.3:+4072716 None:intergenic
GCACTTCCAGGGGTTGCAGA+GGG 0.532965 5.3:+4071624 None:intergenic
TCATCCATATCAACAGGATC+GGG 0.534614 5.3:+4072449 None:intergenic
AGCATTGTCATGCTCCAGTA+AGG 0.535038 5.3:+4071104 None:intergenic
ACCCTAGGAAATTGCGTCCA+GGG 0.536757 5.3:-4072508 MS.gene072798:CDS
TGCCAAGTTGGGTTATGCCA+TGG 0.539994 5.3:-4071931 MS.gene072798:CDS
GATCCAAACGAGCAGCAAAT+GGG 0.542547 5.3:-4071038 MS.gene072798:CDS
TTGCAGATTTGCAAACGAGT+AGG 0.543492 5.3:+4072774 None:intergenic
AGAGAGAATTGAAGGCTGCT+GGG 0.549517 5.3:-4072301 MS.gene072798:CDS
TGATCGGAAATCTGAGGTGG+TGG 0.551298 5.3:+4071969 None:intergenic
CCTTACTCCCAGAAGTGGTA+TGG 0.551739 5.3:-4071598 MS.gene072798:CDS
AGCCGACGAGATGATAAGAA+AGG 0.552168 5.3:-4071136 MS.gene072798:CDS
GAAAAGAAGGATTGATGTTG+AGG 0.552508 5.3:-4072120 MS.gene072798:CDS
GGTATGGCGCCGGCAAGGGA+TGG 0.553823 5.3:-4071582 MS.gene072798:CDS
AGGAGTTCTTAAAGGAGTCA+TGG 0.554344 5.3:+4071824 None:intergenic
GGGTTATGCCATGGACCTTG+TGG 0.554365 5.3:-4071922 MS.gene072798:CDS
CCAGGGGTTGCAGAGGGAGT+CGG 0.554374 5.3:+4071630 None:intergenic
TCCCAGAAGTGGTATGGCGC+CGG 0.554437 5.3:-4071592 MS.gene072798:CDS
AACCATTAGTGCTACCATTG+TGG 0.555517 5.3:-4072618 MS.gene072798:CDS
ATCGCTGCCCACAAGGTCCA+TGG 0.556575 5.3:+4071914 None:intergenic
TGAGAAAGCAAGACGTTGCA+AGG 0.556741 5.3:-4072091 MS.gene072798:CDS
GGATTCGGATCAATCTCCCC+TGG 0.561665 5.3:+4072491 None:intergenic
CCCCTGGACGCAATTTCCTA+GGG 0.562986 5.3:+4072507 None:intergenic
TCAACAGGATCGGGTCGCGC+AGG 0.566355 5.3:+4072458 None:intergenic
ACGATCAAAAGTCATTCAAA+GGG 0.567785 5.3:-4071262 MS.gene072798:CDS
CAAAACAGTGTAAAGCTCGT+TGG 0.569337 5.3:-4072754 MS.gene072798:CDS
ACTACTATAGAAGAACTTGA+GGG 0.571318 5.3:-4072143 MS.gene072798:CDS
GTCCATGGCATAACCCAACT+TGG 0.572980 5.3:+4071929 None:intergenic
TAAAGGAGATGCTATCATGA+TGG 0.573963 5.3:-4071784 MS.gene072798:CDS
TTACTAGCTGGTGTTCTCTG+AGG 0.578802 5.3:+4071804 None:intergenic
TAGAGAAAAGGCAGAAGAAG+AGG 0.579560 5.3:-4071310 MS.gene072798:CDS
CCTTAACACAAGCGGCGTCA+AGG 0.579579 5.3:+4072555 None:intergenic
ATGAACCTGGTGATGACCCT+AGG 0.580871 5.3:-4072523 MS.gene072798:CDS
TCCGAAGGGAACTCCTCTCA+GGG 0.580985 5.3:-4071541 MS.gene072798:CDS
TTATTTGCTATCTCCTCAAG+CGG 0.583374 5.3:+4071075 None:intergenic
ATGGCTTGGTTGGGTGTCTG+TGG 0.585691 5.3:+4071843 None:intergenic
AAGGTTACATTACTCACGCA+AGG 0.586053 5.3:-4070062 MS.gene072798:CDS
AGTAAGGCCTGCACTTCCAG+GGG 0.586407 5.3:+4071614 None:intergenic
AACTCCTTGATAAGAGCTGA+CGG 0.589304 5.3:-4071198 MS.gene072798:CDS
CCTGATAATCTTCTATGACA+GGG 0.589597 5.3:+4071007 None:intergenic
GTAAAGCTCGTTGGTATGAG+TGG 0.590546 5.3:-4072745 MS.gene072798:CDS
GACTGAGTGGACTCGAGAAG+AGG 0.592125 5.3:-4072702 MS.gene072798:CDS
TGCTTCAACAAAATCCTCGA+GGG 0.592155 5.3:+4070250 None:intergenic
CTCCTTCGCAGTGTCTTGAA+CGG 0.594673 5.3:-4072589 MS.gene072798:CDS
TGCTGATGAGGATAGGGAGG+TGG 0.595277 5.3:-4072183 MS.gene072798:CDS
AGTGTTGCCAAAATGAGCAT+AGG 0.596521 5.3:-4072878 None:intergenic
TGAGAAGTAAGCTGGATGAT+GGG 0.598085 5.3:-4070112 MS.gene072798:CDS
TACTACTATAGAAGAACTTG+AGG 0.598439 5.3:-4072144 MS.gene072798:CDS
AAAAGGCAGAAGAAGAGGCA+CGG 0.599691 5.3:-4071305 MS.gene072798:CDS
TTTGAGAAGAGGCCTCCTCT+GGG 0.600719 5.3:-4072218 MS.gene072798:CDS
CTAATGGTTCTCCACTGAGT+AGG 0.603402 5.3:+4072647 None:intergenic
TGGAAGCTGAAAATTTGGCC+AGG 0.607474 5.3:-4071764 MS.gene072798:CDS
GCTCGGTTGGCTAACACGAA+AGG 0.608258 5.3:-4072395 MS.gene072798:CDS
TCTCAGACACCACTGTTAGG+AGG 0.609284 5.3:-4071732 MS.gene072798:CDS
AGCGGAGGAGGAAAAGGAGA+GGG 0.609580 5.3:-4072265 MS.gene072798:CDS
AGCTCCAGAGATGCTGAAGG+AGG 0.610522 5.3:+4071228 None:intergenic
TGAGTTCATCGCTGCCCACA+AGG 0.613064 5.3:+4071907 None:intergenic
AGAAACAGCTTGAGGAAGCG+AGG 0.613924 5.3:-4072346 MS.gene072798:CDS
CAATGCTAAGTATCCGCTTG+AGG 0.613956 5.3:-4071088 MS.gene072798:CDS
AATTTCCTAGGGTCATCACC+AGG 0.619740 5.3:+4072518 None:intergenic
CAGCGGAGGAGGAAAAGGAG+AGG 0.619802 5.3:-4072266 MS.gene072798:CDS
CTGGGATTGATATAAGGCAG+CGG 0.621106 5.3:-4072283 MS.gene072798:CDS
ACTGTTAGGAGGAGAGAACC+CGG 0.623267 5.3:-4071721 MS.gene072798:CDS
GCAGGCCTTACTCCCAGAAG+TGG 0.624004 5.3:-4071603 MS.gene072798:CDS
CGAAGGAGTACGACCCACAA+TGG 0.624367 5.3:+4072604 None:intergenic
CCCTAGGAAATTGCGTCCAG+GGG 0.631019 5.3:-4072507 MS.gene072798:CDS
CTCGTCGGCTTGCTCAATAG+GGG 0.633774 5.3:+4071149 None:intergenic
AACAGCTTGAGGAAGCGAGG+AGG 0.635219 5.3:-4072343 MS.gene072798:CDS
GGCAGCGATGAACTCACCGA+AGG 0.635534 5.3:-4071900 MS.gene072798:CDS
GGCATGCAGAATAGCAGCCG+GGG 0.639810 5.3:+4072043 None:intergenic
AAGGACGATAACTATGAACC+TGG 0.641325 5.3:-4072536 MS.gene072798:CDS
TGTTGCTGATGAGGATAGGG+AGG 0.645550 5.3:-4072186 MS.gene072798:CDS
AGAAGATGCTGAAGAGCCCG+AGG 0.646686 5.3:-4071367 MS.gene072798:CDS
ATAAGCTCCAGAGATGCTGA+AGG 0.646998 5.3:+4071225 None:intergenic
CTACTATAGAAGAACTTGAG+GGG 0.654103 5.3:-4072142 MS.gene072798:CDS
GCCCGAGGAGAAGATTGAAG+AGG 0.654306 5.3:-4071352 MS.gene072798:CDS
ATAGTGCTAGACTCGAGCTA+CGG 0.656913 5.3:-4071482 MS.gene072798:CDS
GTTATCGTCCTTAACACAAG+CGG 0.659717 5.3:+4072547 None:intergenic
AATTCTTGATCGGAAATCTG+AGG 0.665249 5.3:+4071963 None:intergenic
AGCTAGGGAGAAACAGCTTG+AGG 0.665565 5.3:-4072354 MS.gene072798:CDS
TACCGTTCAAGACACTGCGA+AGG 0.666095 5.3:+4072587 None:intergenic
AGGTTACATTACTCACGCAA+GGG 0.667391 5.3:-4070061 MS.gene072798:CDS
CTAAGCTTACGCCTACTCAG+TGG 0.671805 5.3:-4072658 MS.gene072798:CDS
ACATCAAAATAACCCAGAGG+AGG 0.672004 5.3:+4072206 None:intergenic
TCTTGATCGGAAATCTGAGG+TGG 0.678038 5.3:+4071966 None:intergenic
GGGTTCTCTCCTCCTAACAG+TGG 0.680208 5.3:+4071723 None:intergenic
CTTCCATTAAGAAGACTGAG+TGG 0.680364 5.3:-4072715 MS.gene072798:CDS
TGAAGCCCAGTATCTTCGTG+AGG 0.688109 5.3:-4070294 MS.gene072798:CDS
GTGCTTCAACAAAATCCTCG+AGG 0.688213 5.3:+4070249 None:intergenic
ATATGTAGCTCATCCCTGAG+AGG 0.688581 5.3:+4071528 None:intergenic
AGTATCTTCGTGAGGCAATG+GGG 0.691770 5.3:-4070286 MS.gene072798:CDS
GGATTGATATAAGGCAGCGG+AGG 0.699913 5.3:-4072280 MS.gene072798:CDS
TGATATGGATGAGTATGAGA+AGG 0.714958 5.3:-4072438 MS.gene072798:CDS
TGTCATAGAAGATTATCAGG+AGG 0.727087 5.3:-4071004 MS.gene072798:CDS
GCATGAAAATGATTCCCTCG+AGG 0.731393 5.3:-4070264 MS.gene072798:CDS
CAAGGAATAAAATTGCAGAG+AGG 0.745082 5.3:-4072073 MS.gene072798:CDS
GCAACATCAAAATAACCCAG+AGG 0.761769 5.3:+4072203 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGACAAAAATAAAATTAA+AGG + chr5.3:4071969-4071988 None:intergenic 10.0%
!! TTATAATCATTTGATTAATT+AGG - chr5.3:4072313-4072332 MS.gene072798:CDS 10.0%
!! ATTATAACTGAAAAAAAACA+AGG + chr5.3:4072300-4072319 None:intergenic 15.0%
!! AAGTTTGTATTACTATCATT+CGG + chr5.3:4072451-4072470 None:intergenic 20.0%
!! ATAATAATTAACAAGCAGTT+TGG + chr5.3:4072474-4072493 None:intergenic 20.0%
!! TTGTCTGATTATTAATTACT+TGG - chr5.3:4072121-4072140 MS.gene072798:CDS 20.0%
!!! ACAAAGTACTAATAATTTCA+AGG + chr5.3:4072105-4072124 None:intergenic 20.0%
! AATTTCATCCAATTCTTGAT+CGG + chr5.3:4070956-4070975 None:intergenic 25.0%
! GAAATATGGTAAAAATCAGT+GGG - chr5.3:4070096-4070115 MS.gene072798:CDS 25.0%
! TAGGGAATAAATGTTGTAAA+AGG + chr5.3:4072414-4072433 None:intergenic 25.0%
! TGAAATATGGTAAAAATCAG+TGG - chr5.3:4070095-4070114 MS.gene072798:CDS 25.0%
!! ATGTGAATTTCCTTTTTCTT+AGG + chr5.3:4071243-4071262 None:intergenic 25.0%
!! ATTTTTACATAAGATTCCAG+TGG + chr5.3:4072190-4072209 None:intergenic 25.0%
!! TTTTATCTGTTGTTCTCAAT+AGG - chr5.3:4072570-4072589 MS.gene072798:CDS 25.0%
AAAAAGCAAAAAGGAAAGCT+AGG - chr5.3:4070536-4070555 MS.gene072798:intron 30.0%
AAAAGCAAAAAGGAAAGCTA+GGG - chr5.3:4070537-4070556 MS.gene072798:intron 30.0%
AAAGCTGCTGTTATGAAATA+TGG - chr5.3:4070082-4070101 MS.gene072798:CDS 30.0%
AACGATCAAAAGTCATTCAA+AGG - chr5.3:4071643-4071662 MS.gene072798:CDS 30.0%
AATATGCAACTAGCTCATAA+AGG + chr5.3:4072257-4072276 None:intergenic 30.0%
ACAGAAAAAGAGAGAATTGA+AGG - chr5.3:4070597-4070616 MS.gene072798:intron 30.0%
ACGATCAAAAGTCATTCAAA+GGG - chr5.3:4071644-4071663 MS.gene072798:CDS 30.0%
ACTACTATAGAAGAACTTGA+GGG - chr5.3:4070763-4070782 MS.gene072798:intron 30.0%
CAAGTTCTTCTATAGTAGTA+GGG + chr5.3:4070762-4070781 None:intergenic 30.0%
CATCTCCATAGTCAAATTTA+AGG + chr5.3:4072503-4072522 None:intergenic 30.0%
CGAAAGGTAAAAAAGCAAAA+AGG - chr5.3:4070527-4070546 MS.gene072798:intron 30.0%
GCTACATATCAATGAAGATA+TGG - chr5.3:4071392-4071411 MS.gene072798:CDS 30.0%
TACTACTATAGAAGAACTTG+AGG - chr5.3:4070762-4070781 MS.gene072798:intron 30.0%
TATGAGCTAGTTGCATATTA+TGG - chr5.3:4072258-4072277 MS.gene072798:CDS 30.0%
TCAAGTTCTTCTATAGTAGT+AGG + chr5.3:4070763-4070782 None:intergenic 30.0%
TGACTCCTTAAATTTGACTA+TGG - chr5.3:4072495-4072514 MS.gene072798:CDS 30.0%
TTGATAGACCATATGTGTTA+CGG + chr5.3:4072720-4072739 None:intergenic 30.0%
! ATCTCTTTCTAACTGTTTCT+GGG + chr5.3:4070903-4070922 None:intergenic 30.0%
!! ACTATCTGGTACTCATTTTT+AGG + chr5.3:4071504-4071523 None:intergenic 30.0%
!!! TTATTTTGATGTTGCTGATG+AGG - chr5.3:4070711-4070730 MS.gene072798:intron 30.0%
AAGATTCCAGTGGTTTCAAA+GGG + chr5.3:4072180-4072199 None:intergenic 35.0%
AATTCTTGATCGGAAATCTG+AGG + chr5.3:4070946-4070965 None:intergenic 35.0%
ACTAATGGTTCTCCAACTAA+TGG + chr5.3:4070278-4070297 None:intergenic 35.0%
AGAGGATATGTCTGATAGAA+TGG - chr5.3:4071572-4071591 MS.gene072798:CDS 35.0%
ATTGGATGAAATTGCCAAGT+TGG - chr5.3:4070963-4070982 MS.gene072798:intron 35.0%
ATTTCATAACAGCAGCTTTC+AGG + chr5.3:4070081-4070100 None:intergenic 35.0%
CAAGGAATAAAATTGCAGAG+AGG - chr5.3:4070833-4070852 MS.gene072798:intron 35.0%
CCTGATAATCTTCTATGACA+GGG + chr5.3:4071902-4071921 None:intergenic 35.0%
CTACTATAGAAGAACTTGAG+GGG - chr5.3:4070764-4070783 MS.gene072798:intron 35.0%
GAAAAGAAGGATTGATGTTG+AGG - chr5.3:4070786-4070805 MS.gene072798:intron 35.0%
GATCTCTTTCTAACTGTTTC+TGG + chr5.3:4070904-4070923 None:intergenic 35.0%
TAAAGGAGATGCTATCATGA+TGG - chr5.3:4071122-4071141 MS.gene072798:CDS 35.0%
TAAGATTCCAGTGGTTTCAA+AGG + chr5.3:4072181-4072200 None:intergenic 35.0%
TCAGATTTCCGATCAAGAAT+TGG - chr5.3:4070945-4070964 MS.gene072798:intron 35.0%
TCATACTCATCCATATCAAC+AGG + chr5.3:4070466-4070485 None:intergenic 35.0%
TCCTGATAATCTTCTATGAC+AGG + chr5.3:4071903-4071922 None:intergenic 35.0%
TCGGCGAATTAACGTAAATA+GGG + chr5.3:4072432-4072451 None:intergenic 35.0%
TCTTCAGCATCTTCTTGAAT+TGG + chr5.3:4071534-4071553 None:intergenic 35.0%
TGATAGAATGGCTAGAGAAA+AGG - chr5.3:4071584-4071603 MS.gene072798:CDS 35.0%
TGATAGACCATATGTGTTAC+GGG + chr5.3:4072719-4072738 None:intergenic 35.0%
TGATATGGATGAGTATGAGA+AGG - chr5.3:4070468-4070487 MS.gene072798:intron 35.0%
TGTCATAGAAGATTATCAGG+AGG - chr5.3:4071902-4071921 MS.gene072798:CDS 35.0%
TTCGGCGAATTAACGTAAAT+AGG + chr5.3:4072433-4072452 None:intergenic 35.0%
TTGGATGAAATTGCCAAGTT+GGG - chr5.3:4070964-4070983 MS.gene072798:intron 35.0%
TTTGATACCCGTAACACATA+TGG - chr5.3:4072709-4072728 MS.gene072798:CDS 35.0%
! CATGATGGAAGCTGAAAATT+TGG - chr5.3:4071137-4071156 MS.gene072798:CDS 35.0%
! TGCATCCTTCAGATTTTTCT+GGG - chr5.3:4071211-4071230 MS.gene072798:CDS 35.0%
! TTGCATCCTTCAGATTTTTC+TGG - chr5.3:4071210-4071229 MS.gene072798:CDS 35.0%
!! TTATTTGCTATCTCCTCAAG+CGG + chr5.3:4071834-4071853 None:intergenic 35.0%
AAAGAAAAACCATCCCTTGC+CGG + chr5.3:4071336-4071355 None:intergenic 40.0%
AAATCTGAAGGATGCAACTC+CGG + chr5.3:4071207-4071226 None:intergenic 40.0%
AACCATTAGTGCTACCATTG+TGG - chr5.3:4070288-4070307 MS.gene072798:CDS 40.0%
AACTCCTTGATAAGAGCTGA+CGG - chr5.3:4071708-4071727 MS.gene072798:CDS 40.0%
AAGAACTTGAGGGGAAAAGA+AGG - chr5.3:4070773-4070792 MS.gene072798:intron 40.0%
AAGGACGATAACTATGAACC+TGG - chr5.3:4070370-4070389 MS.gene072798:intron 40.0%
AAGGTTACATTACTCACGCA+AGG - chr5.3:4072844-4072863 MS.gene072798:CDS 40.0%
ACATCAAAATAACCCAGAGG+AGG + chr5.3:4070703-4070722 None:intergenic 40.0%
ACCATTAGTGCTACCATTGT+GGG - chr5.3:4070289-4070308 MS.gene072798:CDS 40.0%
AGATTCCAGTGGTTTCAAAG+GGG + chr5.3:4072179-4072198 None:intergenic 40.0%
AGCTTTCAGGATTTCATCCT+CGG + chr5.3:4070068-4070087 None:intergenic 40.0%
AGGAGTTCTTAAAGGAGTCA+TGG + chr5.3:4071085-4071104 None:intergenic 40.0%
AGGTTACATTACTCACGCAA+GGG - chr5.3:4072845-4072864 MS.gene072798:CDS 40.0%
AGTCCACTCAGTCTTCTTAA+TGG + chr5.3:4070197-4070216 None:intergenic 40.0%
ATAGCATCTCCTTTACTAGC+TGG + chr5.3:4071117-4071136 None:intergenic 40.0%
ATCCTCTTCAATCTTCTCCT+CGG + chr5.3:4071559-4071578 None:intergenic 40.0%
ATGAAAAAAAGTCTGCGCTC+TGG - chr5.3:4071459-4071478 MS.gene072798:CDS 40.0%
CAAAACAGTGTAAAGCTCGT+TGG - chr5.3:4070152-4070171 MS.gene072798:CDS 40.0%
CACTCAGTCTTCTTAATGGA+AGG + chr5.3:4070193-4070212 None:intergenic 40.0%
CAGAAATTCCGTTTGAGAAG+AGG - chr5.3:4070677-4070696 MS.gene072798:intron 40.0%
CCCTGTCATAGAAGATTATC+AGG - chr5.3:4071899-4071918 MS.gene072798:CDS 40.0%
CTCATCCATATCAACAGGAT+CGG + chr5.3:4070461-4070480 None:intergenic 40.0%
CTCCTTTCTTATCATCTCGT+CGG + chr5.3:4071775-4071794 None:intergenic 40.0%
CTTCCATTAAGAAGACTGAG+TGG - chr5.3:4070191-4070210 MS.gene072798:CDS 40.0%
GAATTGGTTGCATCACTATC+TGG + chr5.3:4071518-4071537 None:intergenic 40.0%
GAGCTAGTTGCATATTATGG+TGG - chr5.3:4072261-4072280 MS.gene072798:CDS 40.0%
GCAAATAAGGAGAGAGAGAA+AGG - chr5.3:4071846-4071865 MS.gene072798:CDS 40.0%
GCAACATCAAAATAACCCAG+AGG + chr5.3:4070706-4070725 None:intergenic 40.0%
GCTTGAGGAGATAGCAAATA+AGG - chr5.3:4071833-4071852 MS.gene072798:CDS 40.0%
GTTATCGTCCTTAACACAAG+CGG + chr5.3:4070362-4070381 None:intergenic 40.0%
TAGAGAAAAGGCAGAAGAAG+AGG - chr5.3:4071596-4071615 MS.gene072798:CDS 40.0%
TCATCCATATCAACAGGATC+GGG + chr5.3:4070460-4070479 None:intergenic 40.0%
TCATTCAAAGGGAACTTCCT+AGG - chr5.3:4071655-4071674 MS.gene072798:CDS 40.0%
TGAGAAGTAAGCTGGATGAT+GGG - chr5.3:4072794-4072813 MS.gene072798:CDS 40.0%
TGAGAATGTGAGAAGTAAGC+TGG - chr5.3:4072786-4072805 MS.gene072798:CDS 40.0%
TGATGTTGCTGATGAGGATA+GGG - chr5.3:4070717-4070736 MS.gene072798:intron 40.0%
TGCAGATTTGCAAACGAGTA+GGG + chr5.3:4070134-4070153 None:intergenic 40.0%
TGCTTCAACAAAATCCTCGA+GGG + chr5.3:4072659-4072678 None:intergenic 40.0%
TGGGTGTCTGTGGATAATTA+GGG + chr5.3:4071056-4071075 None:intergenic 40.0%
TGGTTTCAAAGGGGTGAAAA+GGG + chr5.3:4072170-4072189 None:intergenic 40.0%
TTCTTAAAGGAGTCATGGCT+TGG + chr5.3:4071080-4071099 None:intergenic 40.0%
TTGATGTTGCTGATGAGGAT+AGG - chr5.3:4070716-4070735 MS.gene072798:intron 40.0%
TTGCAGATTTGCAAACGAGT+AGG + chr5.3:4070135-4070154 None:intergenic 40.0%
TTGGGTGTCTGTGGATAATT+AGG + chr5.3:4071057-4071076 None:intergenic 40.0%
! GATGATTCGACTTGAGAAGA+AGG - chr5.3:4072825-4072844 MS.gene072798:CDS 40.0%
! GCAAGGGATGGTTTTTCTTT+TGG - chr5.3:4071336-4071355 MS.gene072798:CDS 40.0%
! GCATCCTTCAGATTTTTCTG+GGG - chr5.3:4071212-4071231 MS.gene072798:CDS 40.0%
! GTTCTCTGAGGAGTTCTTAA+AGG + chr5.3:4071093-4071112 None:intergenic 40.0%
! TATGGTCTATCAAGTGTTGC+TGG - chr5.3:4072727-4072746 MS.gene072798:CDS 40.0%
! TGTTCACCTTTTCACCCTTT+GGG - chr5.3:4072023-4072042 MS.gene072798:CDS 40.0%
! TTGTTCACCTTTTCACCCTT+TGG - chr5.3:4072022-4072041 MS.gene072798:CDS 40.0%
!! ACTCATTTTTAGGCTGTGGA+AGG + chr5.3:4071494-4071513 None:intergenic 40.0%
!! TGGTACTCATTTTTAGGCTG+TGG + chr5.3:4071498-4071517 None:intergenic 40.0%
AAAAGGCAGAAGAAGAGGCA+CGG - chr5.3:4071601-4071620 MS.gene072798:CDS 45.0%
AAGAGAGAATTGAAGGCTGC+TGG - chr5.3:4070604-4070623 MS.gene072798:intron 45.0%
AATCACGTTGTGTACCCCAA+AGG + chr5.3:4072041-4072060 None:intergenic 45.0%
AATCTGAAGGATGCAACTCC+GGG + chr5.3:4071206-4071225 None:intergenic 45.0%
AATTTCCTAGGGTCATCACC+AGG + chr5.3:4070391-4070410 None:intergenic 45.0%
ACCCACAATGGTAGCACTAA+TGG + chr5.3:4070293-4070312 None:intergenic 45.0%
AGAGAGAATTGAAGGCTGCT+GGG - chr5.3:4070605-4070624 MS.gene072798:intron 45.0%
AGCATTGTCATGCTCCAGTA+AGG + chr5.3:4071805-4071824 None:intergenic 45.0%
AGCCGACGAGATGATAAGAA+AGG - chr5.3:4071770-4071789 MS.gene072798:CDS 45.0%
AGGCTGCTGGGATTGATATA+AGG - chr5.3:4070617-4070636 MS.gene072798:intron 45.0%
AGGTGTTTGGAAAAACACCG+AGG - chr5.3:4070048-4070067 MS.gene072798:CDS 45.0%
AGTATCTTCGTGAGGCAATG+GGG - chr5.3:4072620-4072639 MS.gene072798:CDS 45.0%
ATAAGCTCCAGAGATGCTGA+AGG + chr5.3:4071684-4071703 None:intergenic 45.0%
ATAGTGCTAGACTCGAGCTA+CGG - chr5.3:4071424-4071443 MS.gene072798:CDS 45.0%
ATATGTAGCTCATCCCTGAG+AGG + chr5.3:4071381-4071400 None:intergenic 45.0%
ATCACGTTGTGTACCCCAAA+GGG + chr5.3:4072040-4072059 None:intergenic 45.0%
CAATGCTAAGTATCCGCTTG+AGG - chr5.3:4071818-4071837 MS.gene072798:CDS 45.0%
CAGAGAACACCAGCTAGTAA+AGG - chr5.3:4071105-4071124 MS.gene072798:CDS 45.0%
CAGTATCTTCGTGAGGCAAT+GGG - chr5.3:4072619-4072638 MS.gene072798:CDS 45.0%
CATTGCCTCACGAAGATACT+GGG + chr5.3:4072620-4072639 None:intergenic 45.0%
CTAATGGTTCTCCACTGAGT+AGG + chr5.3:4070262-4070281 None:intergenic 45.0%
CTCAGTGGAGAACCATTAGT+TGG - chr5.3:4070263-4070282 MS.gene072798:CDS 45.0%
CTGGGATTGATATAAGGCAG+CGG - chr5.3:4070623-4070642 MS.gene072798:intron 45.0%
GATCCAAACGAGCAGCAAAT+GGG - chr5.3:4071868-4071887 MS.gene072798:CDS 45.0%
GCATGAAAATGATTCCCTCG+AGG - chr5.3:4072642-4072661 MS.gene072798:CDS 45.0%
GGTTTCAAAGGGGTGAAAAG+GGG + chr5.3:4072169-4072188 None:intergenic 45.0%
GTAAAGCTCGTTGGTATGAG+TGG - chr5.3:4070161-4070180 MS.gene072798:CDS 45.0%
GTGACCCCAGAAAAATCTGA+AGG + chr5.3:4071219-4071238 None:intergenic 45.0%
GTGAGAAGTAAGCTGGATGA+TGG - chr5.3:4072793-4072812 MS.gene072798:CDS 45.0%
GTGCTTCAACAAAATCCTCG+AGG + chr5.3:4072660-4072679 None:intergenic 45.0%
GTGGTTTCAAAGGGGTGAAA+AGG + chr5.3:4072171-4072190 None:intergenic 45.0%
TCCTCTTCAATCTTCTCCTC+GGG + chr5.3:4071558-4071577 None:intergenic 45.0%
TCTTCTATGACAGGGATAGC+AGG + chr5.3:4071894-4071913 None:intergenic 45.0%
TCTTGATCGGAAATCTGAGG+TGG + chr5.3:4070943-4070962 None:intergenic 45.0%
TGAAAATTTGGCCAGGCTGA+GGG - chr5.3:4071149-4071168 MS.gene072798:CDS 45.0%
TGAGAAAGCAAGACGTTGCA+AGG - chr5.3:4070815-4070834 MS.gene072798:intron 45.0%
TGGAAGCTGAAAATTTGGCC+AGG - chr5.3:4071142-4071161 MS.gene072798:CDS 45.0%
TGGGGTCACTCCTAAGAAAA+AGG - chr5.3:4071230-4071249 MS.gene072798:CDS 45.0%
TTACTAGCTGGTGTTCTCTG+AGG + chr5.3:4071105-4071124 None:intergenic 45.0%
TTCTGGGTCATTCAGCTTCT+TGG + chr5.3:4070887-4070906 None:intergenic 45.0%
! GTTCACCTTTTCACCCTTTG+GGG - chr5.3:4072024-4072043 MS.gene072798:CDS 45.0%
! TCTTTTGGCATGACTCCGAA+GGG - chr5.3:4071351-4071370 MS.gene072798:CDS 45.0%
! TTCTTTTGGCATGACTCCGA+AGG - chr5.3:4071350-4071369 MS.gene072798:CDS 45.0%
!! AAAGGAGCTTCTAGCCTTAC+TGG - chr5.3:4071788-4071807 MS.gene072798:CDS 45.0%
!! AAAGGAGTCATGGCTTGGTT+GGG + chr5.3:4071075-4071094 None:intergenic 45.0%
!! AAGTAAGCTGGATGATGGGA+AGG - chr5.3:4072798-4072817 MS.gene072798:CDS 45.0%
!! CAGCATCTCTGGAGCTTATT+AGG - chr5.3:4071685-4071704 MS.gene072798:CDS 45.0%
!! TAAAGGAGTCATGGCTTGGT+TGG + chr5.3:4071076-4071095 None:intergenic 45.0%
!! TTTCACCCCTTTGAAACCAC+TGG - chr5.3:4072171-4072190 MS.gene072798:CDS 45.0%
!! AAAATTAAATAGAAAAAATT+TGG - chr5.3:4072205-4072224 MS.gene072798:CDS 5.0%
ACCCTAGGAAATTGCGTCCA+GGG - chr5.3:4070398-4070417 MS.gene072798:intron 50.0%
ACTGTTAGGAGGAGAGAACC+CGG - chr5.3:4071185-4071204 MS.gene072798:CDS 50.0%
AGAAACAGCTTGAGGAAGCG+AGG - chr5.3:4070560-4070579 MS.gene072798:intron 50.0%
AGAGGAGGCCTCTTCTCAAA+CGG + chr5.3:4070688-4070707 None:intergenic 50.0%
AGCTAGGGAGAAACAGCTTG+AGG - chr5.3:4070552-4070571 MS.gene072798:intron 50.0%
CCAGTATCTTCGTGAGGCAA+TGG - chr5.3:4072618-4072637 MS.gene072798:CDS 50.0%
CCATTGCCTCACGAAGATAC+TGG + chr5.3:4072621-4072640 None:intergenic 50.0%
CCTTACTCCCAGAAGTGGTA+TGG - chr5.3:4071308-4071327 MS.gene072798:CDS 50.0%
CTAAGCTTACGCCTACTCAG+TGG - chr5.3:4070248-4070267 MS.gene072798:CDS 50.0%
CTCCTTCGCAGTGTCTTGAA+CGG - chr5.3:4070317-4070336 MS.gene072798:CDS 50.0%
CTGAAAATTTGGCCAGGCTG+AGG - chr5.3:4071148-4071167 MS.gene072798:CDS 50.0%
GAGTCTCAGACACCACTGTT+AGG - chr5.3:4071171-4071190 MS.gene072798:CDS 50.0%
GCAGGCTTCGATTCAGGATT+CGG + chr5.3:4070433-4070452 None:intergenic 50.0%
GGATCCAAACGAGCAGCAAA+TGG - chr5.3:4071867-4071886 MS.gene072798:CDS 50.0%
GGATTGATATAAGGCAGCGG+AGG - chr5.3:4070626-4070645 MS.gene072798:intron 50.0%
GGTTATGCCATGGACCTTGT+GGG - chr5.3:4070985-4071004 MS.gene072798:intron 50.0%
GTCCATGGCATAACCCAACT+TGG + chr5.3:4070980-4070999 None:intergenic 50.0%
GTCTCCGTCAGCTCTTATCA+AGG + chr5.3:4071715-4071734 None:intergenic 50.0%
GTGTACCCCAAAGGGTGAAA+AGG + chr5.3:4072032-4072051 None:intergenic 50.0%
TACCGTTCAAGACACTGCGA+AGG + chr5.3:4070322-4070341 None:intergenic 50.0%
TCTCAGACACCACTGTTAGG+AGG - chr5.3:4071174-4071193 MS.gene072798:CDS 50.0%
TGAAGCCCAGTATCTTCGTG+AGG - chr5.3:4072612-4072631 MS.gene072798:CDS 50.0%
TGCTTTCCGAAGCATGTGCT+CGG - chr5.3:4070494-4070513 MS.gene072798:intron 50.0%
TGTTGCTGATGAGGATAGGG+AGG - chr5.3:4070720-4070739 MS.gene072798:intron 50.0%
TTGATATAAGGCAGCGGAGG+AGG - chr5.3:4070629-4070648 MS.gene072798:intron 50.0%
TTGGCATGCAGAATAGCAGC+CGG + chr5.3:4070868-4070887 None:intergenic 50.0%
TTTGAGAAGAGGCCTCCTCT+GGG - chr5.3:4070688-4070707 MS.gene072798:intron 50.0%
! ATGAACCTGGTGATGACCCT+AGG - chr5.3:4070383-4070402 MS.gene072798:intron 50.0%
! CCATACCACTTCTGGGAGTA+AGG + chr5.3:4071311-4071330 None:intergenic 50.0%
! TGATCGGAAATCTGAGGTGG+TGG + chr5.3:4070940-4070959 None:intergenic 50.0%
! TGCCAAGTTGGGTTATGCCA+TGG - chr5.3:4070975-4070994 MS.gene072798:intron 50.0%
!! ATCTCGTCGGCTTGCTCAAT+AGG + chr5.3:4071762-4071781 None:intergenic 50.0%
!! TCTCGTCGGCTTGCTCAATA+GGG + chr5.3:4071761-4071780 None:intergenic 50.0%
AACAGCTTGAGGAAGCGAGG+AGG - chr5.3:4070563-4070582 MS.gene072798:intron 55.0%
ACGAGTAGCACTGCTGCCTT+CGG + chr5.3:4071025-4071044 None:intergenic 55.0%
AGAAGATGCTGAAGAGCCCG+AGG - chr5.3:4071539-4071558 MS.gene072798:CDS 55.0%
AGAGATGCTGAAGGAGGCCT+AGG + chr5.3:4071675-4071694 None:intergenic 55.0%
AGCCAACCGAGCACATGCTT+CGG + chr5.3:4070503-4070522 None:intergenic 55.0%
AGCGGAGGAGGAAAAGGAGA+GGG - chr5.3:4070641-4070660 MS.gene072798:intron 55.0%
AGCTCCAGAGATGCTGAAGG+AGG + chr5.3:4071681-4071700 None:intergenic 55.0%
AGTAAGGCCTGCACTTCCAG+GGG + chr5.3:4071295-4071314 None:intergenic 55.0%
CCCCTGGACGCAATTTCCTA+GGG + chr5.3:4070402-4070421 None:intergenic 55.0%
CCCTAGGAAATTGCGTCCAG+GGG - chr5.3:4070399-4070418 MS.gene072798:intron 55.0%
CCTTAACACAAGCGGCGTCA+AGG + chr5.3:4070354-4070373 None:intergenic 55.0%
CCTTGACGCCGCTTGTGTTA+AGG - chr5.3:4070351-4070370 MS.gene072798:intron 55.0%
GACCCTAGGAAATTGCGTCC+AGG - chr5.3:4070397-4070416 MS.gene072798:intron 55.0%
GAGTAAGGCCTGCACTTCCA+GGG + chr5.3:4071296-4071315 None:intergenic 55.0%
GCCCGAGGAGAAGATTGAAG+AGG - chr5.3:4071554-4071573 MS.gene072798:CDS 55.0%
GCGACCCGATCCTGTTGATA+TGG - chr5.3:4070453-4070472 MS.gene072798:intron 55.0%
GCTTGCTCAATAGGGGTTGG+TGG + chr5.3:4071753-4071772 None:intergenic 55.0%
GGATTCGGATCAATCTCCCC+TGG + chr5.3:4070418-4070437 None:intergenic 55.0%
GGGTTATGCCATGGACCTTG+TGG - chr5.3:4070984-4071003 MS.gene072798:intron 55.0%
GGGTTCTCTCCTCCTAACAG+TGG + chr5.3:4071186-4071205 None:intergenic 55.0%
GTTTGAGAAGAGGCCTCCTC+TGG - chr5.3:4070687-4070706 MS.gene072798:intron 55.0%
TAAGGCAGCGGAGGAGGAAA+AGG - chr5.3:4070635-4070654 MS.gene072798:intron 55.0%
TAGGCCTCCTTCAGCATCTC+TGG - chr5.3:4071674-4071693 MS.gene072798:CDS 55.0%
TCCCCTGGACGCAATTTCCT+AGG + chr5.3:4070403-4070422 None:intergenic 55.0%
TCCCTGAGAGGAGTTCCCTT+CGG + chr5.3:4071369-4071388 None:intergenic 55.0%
TCCGAAGGGAACTCCTCTCA+GGG - chr5.3:4071365-4071384 MS.gene072798:CDS 55.0%
TGAGTTCATCGCTGCCCACA+AGG + chr5.3:4071002-4071021 None:intergenic 55.0%
TGCTGATGAGGATAGGGAGG+TGG - chr5.3:4070723-4070742 MS.gene072798:intron 55.0%
TGGCATGCAGAATAGCAGCC+GGG + chr5.3:4070867-4070886 None:intergenic 55.0%
TTCCGAAGCATGTGCTCGGT+TGG - chr5.3:4070498-4070517 MS.gene072798:intron 55.0%
! AGAAGAAGAGGCACGGCAGA+AGG - chr5.3:4071608-4071627 MS.gene072798:CDS 55.0%
! AGGCCCATTTGCTGCTCGTT+TGG + chr5.3:4071874-4071893 None:intergenic 55.0%
! CGAAGGAGTACGACCCACAA+TGG + chr5.3:4070305-4070324 None:intergenic 55.0%
! GACTGAGTGGACTCGAGAAG+AGG - chr5.3:4070204-4070223 MS.gene072798:CDS 55.0%
! GCTCGGTTGGCTAACACGAA+AGG - chr5.3:4070511-4070530 MS.gene072798:intron 55.0%
! TCGGCTTGCTCAATAGGGGT+TGG + chr5.3:4071756-4071775 None:intergenic 55.0%
!! ATGGCTTGGTTGGGTGTCTG+TGG + chr5.3:4071066-4071085 None:intergenic 55.0%
!! CTCGTCGGCTTGCTCAATAG+GGG + chr5.3:4071760-4071779 None:intergenic 55.0%
ATCGCTGCCCACAAGGTCCA+TGG + chr5.3:4070995-4071014 None:intergenic 60.0%
CAGCGGAGGAGGAAAAGGAG+AGG - chr5.3:4070640-4070659 MS.gene072798:intron 60.0%
CTCCGAAGGGAACTCCTCTC+AGG - chr5.3:4071364-4071383 MS.gene072798:CDS 60.0%
GCACTTCCAGGGGTTGCAGA+GGG + chr5.3:4071285-4071304 None:intergenic 60.0%
GCAGGCCTTACTCCCAGAAG+TGG - chr5.3:4071303-4071322 MS.gene072798:CDS 60.0%
GGAGTAAGGCCTGCACTTCC+AGG + chr5.3:4071297-4071316 None:intergenic 60.0%
GGCAGCGATGAACTCACCGA+AGG - chr5.3:4071006-4071025 MS.gene072798:CDS 60.0%
GGCATGCAGAATAGCAGCCG+GGG + chr5.3:4070866-4070885 None:intergenic 60.0%
TCCCAGAAGTGGTATGGCGC+CGG - chr5.3:4071314-4071333 MS.gene072798:CDS 60.0%
TGCACTTCCAGGGGTTGCAG+AGG + chr5.3:4071286-4071305 None:intergenic 60.0%
TGCAGAGAGGCAAGATGCCC+CGG - chr5.3:4070846-4070865 MS.gene072798:intron 60.0%
TTGCAGAGGGAGTCGGCAGT+GGG + chr5.3:4071272-4071291 None:intergenic 60.0%
! TCTGCAACCCCTGGAAGTGC+AGG - chr5.3:4071285-4071304 MS.gene072798:CDS 60.0%
! TGTCTGAGACTCCCTCAGCC+TGG + chr5.3:4071163-4071182 None:intergenic 60.0%
!! AAGTGGTATGGCGCCGGCAA+GGG - chr5.3:4071320-4071339 MS.gene072798:CDS 60.0%
CCAGGGGTTGCAGAGGGAGT+CGG + chr5.3:4071279-4071298 None:intergenic 65.0%
GAGGGAGTCGGCAGTGGGAT+TGG + chr5.3:4071267-4071286 None:intergenic 65.0%
GCCGGCGCCATACCACTTCT+GGG + chr5.3:4071318-4071337 None:intergenic 65.0%
GGTCGCGCAGGCTTCGATTC+AGG + chr5.3:4070439-4070458 None:intergenic 65.0%
GTTGCAGAGGGAGTCGGCAG+TGG + chr5.3:4071273-4071292 None:intergenic 65.0%
TCAACAGGATCGGGTCGCGC+AGG + chr5.3:4070451-4070470 None:intergenic 65.0%
TGCCGGCGCCATACCACTTC+TGG + chr5.3:4071319-4071338 None:intergenic 65.0%
!! GAAGTGGTATGGCGCCGGCA+AGG - chr5.3:4071319-4071338 MS.gene072798:CDS 65.0%
CCGACTCCCTCTGCAACCCC+TGG - chr5.3:4071276-4071295 MS.gene072798:CDS 70.0%
!! GGTATGGCGCCGGCAAGGGA+TGG - chr5.3:4071324-4071343 MS.gene072798:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 4070040 4072888 4070040 ID=MS.gene072798
chr5.3 mRNA 4070040 4072888 4070040 ID=MS.gene072798.t1;Parent=MS.gene072798
chr5.3 exon 4070990 4072888 4070990 ID=MS.gene072798.t1.exon1;Parent=MS.gene072798.t1
chr5.3 CDS 4070990 4072888 4070990 ID=cds.MS.gene072798.t1;Parent=MS.gene072798.t1
chr5.3 exon 4070040 4070336 4070040 ID=MS.gene072798.t1.exon2;Parent=MS.gene072798.t1
chr5.3 CDS 4070040 4070336 4070040 ID=cds.MS.gene072798.t1;Parent=MS.gene072798.t1
Gene Sequence

>MS.gene072798

ATGAGCATAGGTGTTTGGAAAAACACCGAGGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCATATCTCGTCCCTACTCGTTTGCAAATCTGCAAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAGACTGAGTGGACTCGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTACGCCTACTCAGTGGAGAACCATTAGTTGGAGAACCATTAGTGCTACCATTGTGGGTCGTACTCCTTCGCAGTGTCTTGAACGGTATGAGAAACTCCTTGACGCCGCTTGTGTTAAGGACGATAACTATGAACCTGGTGATGACCCTAGGAAATTGCGTCCAGGGGAGATTGATCCGAATCCTGAATCGAAGCCTGCGCGACCCGATCCTGTTGATATGGATGAGTATGAGAAGGAGATGCTTTCCGAAGCATGTGCTCGGTTGGCTAACACGAAAGGTAAAAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAATTGAAGGCTGCTGGGATTGATATAAGGCAGCGGAGGAGGAAAAGGAGAGGGATTGATTATAATGCAGAAATTCCGTTTGAGAAGAGGCCTCCTCTGGGTTATTTTGATGTTGCTGATGAGGATAGGGAGGTGGAGCAGCATGCATTCCCTACTACTATAGAAGAACTTGAGGGGAAAAGAAGGATTGATGTTGAGGCTCAGTTGAGAAAGCAAGACGTTGCAAGGAATAAAATTGCAGAGAGGCAAGATGCCCCGGCTGCTATTCTGCATGCCAAGAAGCTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCTCAGATTTCCGATCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCCATGGACCTTGTGGGCAGCGATGAACTCACCGAAGGCAGCAGTGCTACTCGTGCTCTTCTCCCTAATTATCCACAGACACCCAACCAAGCCATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACACCACTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACATTCCAATCCCACTGCCGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCCAGAAGTGGTATGGCGCCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCGAAGGGAACTCCTCTCAGGGATGAGCTACATATCAATGAAGATATGGAGATGCGTGATAGTGCTAGACTCGAGCTACGGAGACAAGCTGATATGAAAAAAAGTCTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAATTCAAGAAGATGCTGAAGAGCCCGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATGGCTAGAGAAAAGGCAGAAGAAGAGGCACGGCAGAAGGCATTACTTAGAAAACGATCAAAAGTCATTCAAAGGGAACTTCCTAGGCCTCCTTCAGCATCTCTGGAGCTTATTAGGAACTCCTTGATAAGAGCTGACGGAGACAAAAGTTCATTTGTTCCACCAACCCCTATTGAGCAAGCCGACGAGATGATAAGAAAGGAGCTTCTAGCCTTACTGGAGCATGACAATGCTAAGTATCCGCTTGAGGAGATAGCAAATAAGGAGAGAGAGAAAGGATCCAAACGAGCAGCAAATGGGCCTGCTATCCCTGTCATAGAAGATTATCAGGAGGACGAGATGAAATCTGTATGTTTTTACTAATTTATCTGCTCACCTTTAATTTTATTTTTGTCTTTTAATTCGCTTTTCTTCATTTGCTACTAAGTAGCTTGTTCACCTTTTCACCCTTTGGGGTACACAACGTGATTTTTCATTTAGATGATACACATGCTTTTTCTGATGATCTTGACCTTGAAATTATTAGTACTTTGTCTGATTATTAATTACTTGGCATCATCATTTTTATGCTGAAACCCCTTTTCACCCCTTTGAAACCACTGGAATCTTATGTAAAAATTAAATAGAAAAAATTTGGACATCTTTTTAATTTATGTATCATCTCCTTTATGAGCTAGTTGCATATTATGGTGGTGTATTGTATCGTCCTTGTTTTTTTTCAGTTATAATCATTTGATTAATTAGGTTGAAGTTAGTTTTAGTTTCTCGCAATTGTTGTTCTCTATTTCTTTCGTTTTTGTAACAAGTGATTCTTCAATTGCCTTTTACAACATTTATTCCCTATTTACGTTAATTCGCCGAATGATAGTAATACAAACTTCCAAACTGCTTGTTAATTATTATTTGACTCCTTAAATTTGACTATGGAGATGAGCTTGTACGTTGATGAATGATAATATCTGTGTTGACTGTTATTTATTTTTATCTGTTGTTCTCAATAGGCTGATCAGTTGATAAAAGATGAAGCCCAGTATCTTCGTGAGGCAATGGGGCATGAAAATGATTCCCTCGAGGATTTTGTTGAAGCACATACAACATGCATTAATGATTTAATGTACTTTGATACCCGTAACACATATGGTCTATCAAGTGTTGCTGGAAACGCAGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGTAAGCTGGATGATGGGAAGGAGAAGATGATTCGACTTGAGAAGAAGGTTACATTACTCACGCAAGGGTACGAGTTATGCTACTGCTAA
Protein sequence

>MS.gene072798.t1

MSIGVWKNTEDEILKAAVMKYGKNQWAHISSLLVCKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLTPTQWRTISWRTISATIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEYEKEMLSEACARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPLGYFDVADEDREVEQHAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHAKKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYAMDLVGSDELTEGSSATRALLPNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHIPIPLPTPSATPGSAGLTPRSGMAPARDGFSFGMTPKGTPLRDELHINEDMEMRDSARLELRRQADMKKSLRSGLSSLPQPKNEYQIVMQPIQEDAEEPEEKIEEDMSDRMAREKAEEEARQKALLRKRSKVIQRELPRPPSASLELIRNSLIRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPLEEIANKEREKGSKRAANGPAIPVIEDYQEDEMKSADQLIKDEAQYLREAMGHENDSLEDFVEAHTTCINDLMYFDTRNTYGLSSVAGNAEKLAALQNEFENVRSKLDDGKEKMIRLEKKVTLLTQGYELCYC