Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040399.t1 | XP_013448021.1 | 97.4 | 349 | 9 | 0 | 1 | 349 | 64 | 412 | 1.20E-198 | 702.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040399.t1 | Q67ZU1 | 63.6 | 349 | 126 | 1 | 1 | 348 | 68 | 416 | 3.3e-136 | 486.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040399.t1 | A0A072TYW1 | 97.4 | 349 | 9 | 0 | 1 | 349 | 64 | 412 | 8.7e-199 | 702.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040399 | MS.gene029607 | PPI |
| MS.gene040399 | MS.gene060315 | PPI |
| MS.gene040399 | MS.gene029609 | PPI |
| MS.gene040399 | MS.gene71663 | PPI |
| MS.gene040399 | MS.gene060313 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040399.t1 | MTR_7g029365 | 97.421 | 349 | 9 | 0 | 1 | 349 | 64 | 412 | 0.0 | 711 |
| MS.gene040399.t1 | MTR_7g029365 | 97.531 | 243 | 6 | 0 | 1 | 243 | 64 | 306 | 2.10e-178 | 497 |
| MS.gene040399.t1 | MTR_6g023740 | 61.254 | 351 | 133 | 3 | 1 | 348 | 63 | 413 | 6.06e-160 | 454 |
| MS.gene040399.t1 | MTR_6g023750 | 58.974 | 351 | 141 | 3 | 1 | 348 | 6 | 356 | 1.16e-154 | 439 |
| MS.gene040399.t1 | MTR_6g023715 | 57.265 | 351 | 128 | 5 | 1 | 348 | 63 | 394 | 1.18e-143 | 412 |
| MS.gene040399.t1 | MTR_5g084950 | 53.314 | 347 | 155 | 2 | 1 | 346 | 59 | 399 | 2.25e-135 | 391 |
| MS.gene040399.t1 | MTR_7g081050 | 48.703 | 347 | 175 | 1 | 1 | 347 | 60 | 403 | 9.52e-127 | 369 |
| MS.gene040399.t1 | MTR_3g081060 | 49.857 | 349 | 170 | 4 | 1 | 347 | 64 | 409 | 5.28e-124 | 363 |
| MS.gene040399.t1 | MTR_3g081040 | 49.138 | 348 | 173 | 2 | 1 | 347 | 60 | 404 | 3.63e-123 | 360 |
| MS.gene040399.t1 | MTR_6g033965 | 45.977 | 348 | 181 | 5 | 1 | 347 | 61 | 402 | 5.48e-113 | 334 |
| MS.gene040399.t1 | MTR_3g080980 | 45.821 | 347 | 185 | 1 | 1 | 347 | 60 | 403 | 1.29e-108 | 323 |
| MS.gene040399.t1 | MTR_6g033975 | 44.828 | 348 | 184 | 5 | 1 | 347 | 61 | 401 | 5.35e-107 | 319 |
| MS.gene040399.t1 | MTR_7g081060 | 43.266 | 349 | 192 | 4 | 1 | 348 | 61 | 404 | 1.41e-101 | 305 |
| MS.gene040399.t1 | MTR_1g107330 | 40.395 | 354 | 200 | 4 | 1 | 349 | 52 | 399 | 3.58e-96 | 291 |
| MS.gene040399.t1 | MTR_0595s0010 | 65.896 | 173 | 57 | 2 | 1 | 171 | 63 | 235 | 1.01e-81 | 252 |
| MS.gene040399.t1 | MTR_1g107330 | 42.742 | 248 | 136 | 2 | 1 | 243 | 52 | 298 | 1.09e-66 | 213 |
| MS.gene040399.t1 | MTR_5g006650 | 47.953 | 171 | 73 | 4 | 6 | 171 | 44 | 203 | 9.12e-45 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040399.t1 | AT5G14180 | 63.610 | 349 | 126 | 1 | 1 | 348 | 68 | 416 | 2.36e-175 | 493 |
| MS.gene040399.t1 | AT5G14180 | 64.194 | 310 | 111 | 0 | 39 | 348 | 7 | 316 | 3.44e-157 | 443 |
| MS.gene040399.t1 | AT5G14180 | 63.844 | 307 | 111 | 0 | 42 | 348 | 1 | 307 | 1.03e-154 | 437 |
| MS.gene040399.t1 | AT5G14180 | 64.754 | 244 | 85 | 1 | 1 | 243 | 68 | 311 | 2.72e-121 | 352 |
| MS.gene040399.t1 | AT5G14180 | 58.952 | 229 | 91 | 2 | 1 | 226 | 68 | 296 | 1.14e-99 | 297 |
| MS.gene040399.t1 | AT2G15230 | 39.017 | 346 | 201 | 4 | 1 | 346 | 49 | 384 | 1.87e-89 | 274 |
| MS.gene040399.t1 | AT1G73920 | 25.469 | 373 | 229 | 10 | 1 | 339 | 243 | 600 | 4.02e-16 | 80.1 |
| MS.gene040399.t1 | AT1G73920 | 25.469 | 373 | 229 | 10 | 1 | 339 | 312 | 669 | 4.34e-16 | 80.1 |
Find 0 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATAAAATATTAAT+TGG | + | 51474:10546-10565 | MS.gene040399:intergenic | 0.0% |
| !! | TAATATATAAAATATTAATT+GGG | + | 51474:10545-10564 | MS.gene040399:intergenic | 0.0% |
| !! | AATAATAATAAAATGATTTG+TGG | + | 51474:8451-8470 | MS.gene040399:intergenic | 10.0% |
| !! | TATAGTATAAATGTTTATAT+TGG | + | 51474:10705-10724 | MS.gene040399:intergenic | 10.0% |
| !! | TATATCTTCATAAAAAATTA+TGG | - | 51474:8110-8129 | MS.gene040399:intron | 10.0% |
| !!! | CATAATTTTATACATAAAAA+AGG | - | 51474:10382-10401 | MS.gene040399:intron | 10.0% |
| !! | AAAAATTTATGTATTAGAGA+AGG | + | 51474:9756-9775 | MS.gene040399:intergenic | 15.0% |
| !! | AAGATACATTAATTTCATTA+AGG | + | 51474:9712-9731 | MS.gene040399:intergenic | 15.0% |
| !! | ACAAATAGAATAGTAAAAAA+AGG | + | 51474:10055-10074 | MS.gene040399:intergenic | 15.0% |
| !! | AGAACATTATTAATTGTTTA+AGG | - | 51474:11028-11047 | MS.gene040399:intron | 15.0% |
| !! | ATTACTATTACATTAATTAG+AGG | + | 51474:8860-8879 | MS.gene040399:intergenic | 15.0% |
| !! | CAAATAGAATAGTAAAAAAA+GGG | + | 51474:10054-10073 | MS.gene040399:intergenic | 15.0% |
| !! | CTAACATTTAATTAGATATT+TGG | - | 51474:11276-11295 | MS.gene040399:intron | 15.0% |
| !! | GAATGAAATTCAATAAATAA+GGG | - | 51474:7850-7869 | MS.gene040399:CDS | 15.0% |
| !! | TAATGTAATAGTAATAGTAT+AGG | - | 51474:8865-8884 | MS.gene040399:intron | 15.0% |
| !! | TAATTGTTAATTAGAAGAAA+TGG | + | 51474:8420-8439 | MS.gene040399:intergenic | 15.0% |
| !! | TATATAAGTTTATAAAATGG+AGG | - | 51474:6369-6388 | MS.gene040399:intron | 15.0% |
| !! | TGAATGAAATTCAATAAATA+AGG | - | 51474:7849-7868 | MS.gene040399:CDS | 15.0% |
| !! | TTAAGGATTTATTACAATAA+AGG | + | 51474:9695-9714 | MS.gene040399:intergenic | 15.0% |
| !!! | AAAGTTTTTTTTCCAATAAA+TGG | - | 51474:7530-7549 | MS.gene040399:intron | 15.0% |
| !!! | AAGTTTTTTTTCCAATAAAT+GGG | - | 51474:7531-7550 | MS.gene040399:intron | 15.0% |
| !!! | AATATTTTTTTGTTTGTTTG+AGG | - | 51474:9109-9128 | MS.gene040399:intron | 15.0% |
| !!! | ACAATAAAGGTTTTTTTTTT+TGG | + | 51474:9682-9701 | MS.gene040399:intergenic | 15.0% |
| !!! | ATTTGTTGTTATTTAATCAA+AGG | + | 51474:7197-7216 | MS.gene040399:intergenic | 15.0% |
| !!! | CATGCATTTTATTATATTTT+TGG | + | 51474:6204-6223 | MS.gene040399:intergenic | 15.0% |
| !!! | TTTGTTGTTATTTAATCAAA+GGG | + | 51474:7196-7215 | MS.gene040399:intergenic | 15.0% |
| !!! | TTTGTTTATGCTTATTTTTA+AGG | - | 51474:9222-9241 | MS.gene040399:intron | 15.0% |
| !! | AAAAATGTAACCATAAAACT+TGG | - | 51474:6751-6770 | MS.gene040399:intron | 20.0% |
| !! | AACAAAAAACATAAACATAC+TGG | + | 51474:9087-9106 | MS.gene040399:intergenic | 20.0% |
| !! | AATTAAAACTGTTAGAAACA+AGG | - | 51474:9602-9621 | MS.gene040399:intron | 20.0% |
| !! | AATTATGTTAAATAAGTAGC+TGG | + | 51474:9449-9468 | MS.gene040399:intergenic | 20.0% |
| !! | ACAAAAAACATAAACATACT+GGG | + | 51474:9086-9105 | MS.gene040399:intergenic | 20.0% |
| !! | ACCACACAATAAATAATTTA+AGG | + | 51474:9575-9594 | MS.gene040399:intergenic | 20.0% |
| !! | AGAAAGTCTCAATTAATAAA+TGG | + | 51474:9802-9821 | MS.gene040399:intergenic | 20.0% |
| !! | GAAAAAAAAAGACATTTATC+TGG | + | 51474:6276-6295 | MS.gene040399:intergenic | 20.0% |
| !! | GAAAATGCTAACAATAAAAT+TGG | + | 51474:9553-9572 | MS.gene040399:intergenic | 20.0% |
| !! | TCATGTAAAAAAGTAAGTAA+TGG | + | 51474:9955-9974 | MS.gene040399:intergenic | 20.0% |
| !! | TCCTTAAATTATTTATTGTG+TGG | - | 51474:9571-9590 | MS.gene040399:intron | 20.0% |
| !! | TGAAGACTATTCAAATATTT+AGG | + | 51474:9256-9275 | MS.gene040399:intergenic | 20.0% |
| !! | TTCTTCCAAAAACAAATTTA+AGG | - | 51474:8809-8828 | MS.gene040399:CDS | 20.0% |
| !! | TTTATCTGGATATGAAAAAA+AGG | + | 51474:6262-6281 | MS.gene040399:intergenic | 20.0% |
| !!! | AAAATAATAGCCAAGTTTTA+TGG | + | 51474:6764-6783 | MS.gene040399:intergenic | 20.0% |
| !!! | ACATTCCTTAAATTTGTTTT+TGG | + | 51474:8817-8836 | MS.gene040399:intergenic | 20.0% |
| !!! | ACATTTTTTTTTTTGCATGA+TGG | + | 51474:10985-11004 | MS.gene040399:intergenic | 20.0% |
| !!! | ATGCTTATTTTTAAGGAAAA+TGG | - | 51474:9229-9248 | MS.gene040399:intron | 20.0% |
| !!! | CATATTTTTGTGTTACTTTT+CGG | - | 51474:7466-7485 | MS.gene040399:intron | 20.0% |
| !!! | CATTTTTCTCTTAGATATTT+TGG | + | 51474:6796-6815 | MS.gene040399:intergenic | 20.0% |
| !!! | CTTTTTGGAATTTAAATAGA+CGG | - | 51474:8516-8535 | MS.gene040399:intron | 20.0% |
| !!! | TAAGCAAAAAACTACATTTT+AGG | + | 51474:7326-7345 | MS.gene040399:intergenic | 20.0% |
| !!! | TAATTTTGACTTGTATTTGT+AGG | + | 51474:9325-9344 | MS.gene040399:intergenic | 20.0% |
| !!! | TTGAGTTTTTTTTAAATACG+AGG | - | 51474:10945-10964 | MS.gene040399:intron | 20.0% |
| !!! | TTGTTGTTTTTTCTTTCAAT+CGG | - | 51474:11170-11189 | MS.gene040399:intron | 20.0% |
| !!! | TTTTTGCTTATAATAATGAC+CGG | + | 51474:7227-7246 | MS.gene040399:intergenic | 20.0% |
| !!! | TTTTTGGTGAAAAAATTGTT+AGG | + | 51474:7400-7419 | MS.gene040399:intergenic | 20.0% |
| ! | AACTTCAAATAAATCATGCT+AGG | - | 51474:8195-8214 | MS.gene040399:intron | 25.0% |
| ! | AATAGTCTTCAACATAAAAC+TGG | - | 51474:9265-9284 | MS.gene040399:intron | 25.0% |
| ! | AATGTATGTATGTATGTGTA+TGG | - | 51474:8832-8851 | MS.gene040399:intron | 25.0% |
| ! | AGAATAAGATTCCCATTTAT+TGG | + | 51474:7545-7564 | MS.gene040399:intergenic | 25.0% |
| ! | AGTCAAAATTCTAATATGGA+TGG | - | 51474:6936-6955 | MS.gene040399:CDS | 25.0% |
| ! | ATAAAGAGAATGTCGTTATA+AGG | + | 51474:8277-8296 | MS.gene040399:intergenic | 25.0% |
| ! | ATGTATGTATGTATGTGTAT+GGG | - | 51474:8833-8852 | MS.gene040399:intron | 25.0% |
| ! | ATGTTGAGAATTTACTTGAT+AGG | - | 51474:11571-11590 | MS.gene040399:intron | 25.0% |
| ! | ATGTTGGATAGGTTATATAT+TGG | + | 51474:11489-11508 | MS.gene040399:intergenic | 25.0% |
| ! | ATTGGTCAAAGTAAAATATG+TGG | + | 51474:10687-10706 | MS.gene040399:intergenic | 25.0% |
| ! | ATTTCTCCTCCAAAAAATTA+AGG | + | 51474:7670-7689 | MS.gene040399:intergenic | 25.0% |
| ! | CATTCATTTAATGATGTATG+TGG | + | 51474:7301-7320 | MS.gene040399:intergenic | 25.0% |
| ! | CGAAAAGTAACACAAAAATA+TGG | + | 51474:7468-7487 | MS.gene040399:intergenic | 25.0% |
| ! | CGTCTATTTAAATTCCAAAA+AGG | + | 51474:8518-8537 | MS.gene040399:intergenic | 25.0% |
| ! | GAAAAAAGTTACAAAAACAG+TGG | + | 51474:6240-6259 | MS.gene040399:intergenic | 25.0% |
| ! | GACAATTTCTTATGTTACAT+TGG | + | 51474:10506-10525 | MS.gene040399:intergenic | 25.0% |
| ! | GATTATAACATAATGCACTA+TGG | - | 51474:11450-11469 | MS.gene040399:intron | 25.0% |
| ! | GTAATAATCAAGACCATAAT+CGG | + | 51474:8721-8740 | MS.gene040399:intergenic | 25.0% |
| ! | GTTTATATACGATGTGAATT+TGG | - | 51474:8331-8350 | MS.gene040399:intron | 25.0% |
| ! | TAAATTCCAAAAAGGTTTGA+AGG | + | 51474:8510-8529 | MS.gene040399:intergenic | 25.0% |
| ! | TAATTTGACCTAAAAACAAG+AGG | - | 51474:9357-9376 | MS.gene040399:intron | 25.0% |
| ! | TAGCAGAATTTAATCCTAAA+GGG | - | 51474:10464-10483 | MS.gene040399:intron | 25.0% |
| ! | TAGTGCATTATGTTATAATC+TGG | + | 51474:11450-11469 | MS.gene040399:intergenic | 25.0% |
| ! | TCTAAGAGAAAAATGACATA+TGG | - | 51474:6801-6820 | MS.gene040399:intron | 25.0% |
| ! | TTCCAGTCAAAATTCTAATA+TGG | - | 51474:6932-6951 | MS.gene040399:CDS | 25.0% |
| ! | TTGGTCAAAGTAAAATATGT+GGG | + | 51474:10686-10705 | MS.gene040399:intergenic | 25.0% |
| ! | TTTATAAAATGGAGGACATA+AGG | - | 51474:6377-6396 | MS.gene040399:intron | 25.0% |
| ! | TTTCTCCTCCAAAAAATTAA+GGG | + | 51474:7669-7688 | MS.gene040399:intergenic | 25.0% |
| ! | TTTGTCACCATGTTAAAATA+CGG | + | 51474:6587-6606 | MS.gene040399:intergenic | 25.0% |
| !! | ACAACAATTTTTACCTGAAT+TGG | + | 51474:10758-10777 | MS.gene040399:intergenic | 25.0% |
| !! | CTATTCTATTTGTCTAAAAC+TGG | - | 51474:10062-10081 | MS.gene040399:intron | 25.0% |
| !! | TTTATTTGTGTTACTGACTA+AGG | - | 51474:11348-11367 | MS.gene040399:intron | 25.0% |
| !!! | AATCGATTGAATTTTGAGAA+GGG | + | 51474:11222-11241 | MS.gene040399:intergenic | 25.0% |
| !!! | AGTGATAACCCTTAATTTTT+TGG | - | 51474:7567-7586 | MS.gene040399:CDS | 25.0% |
| !!! | ATCCATATTAGAATTTTGAC+TGG | + | 51474:6937-6956 | MS.gene040399:intergenic | 25.0% |
| !!! | GTTTACATTATTGATTTGCT+AGG | + | 51474:8372-8391 | MS.gene040399:intergenic | 25.0% |
| !!! | TACACCAATTTTTTGAGAAA+GGG | + | 51474:6691-6710 | MS.gene040399:intergenic | 25.0% |
| !!! | TCGTGATTATTGTGTTATTT+TGG | - | 51474:10872-10891 | MS.gene040399:intron | 25.0% |
| !!! | TTACACCAATTTTTTGAGAA+AGG | + | 51474:6692-6711 | MS.gene040399:intergenic | 25.0% |
| !!! | TTTGTTTTTGGAAGAAACAA+TGG | + | 51474:8805-8824 | MS.gene040399:intergenic | 25.0% |
| AAACAGATCACTACACTATT+TGG | - | 51474:10439-10458 | MS.gene040399:intron | 30.0% | |
| AAATAGTGTAGTGATCTGTT+TGG | + | 51474:10440-10459 | MS.gene040399:intergenic | 30.0% | |
| AACACATAATCAAAAACAGC+AGG | + | 51474:9884-9903 | MS.gene040399:intergenic | 30.0% | |
| AACATCGAAGAATGTATTGA+TGG | - | 51474:11251-11270 | MS.gene040399:intron | 30.0% | |
| AAGGATTTATTCTGTGTACT+CGG | + | 51474:11117-11136 | MS.gene040399:intergenic | 30.0% | |
| AAGTTTGTGCACGATTATTA+AGG | - | 51474:7735-7754 | MS.gene040399:intron | 30.0% | |
| AATCATGCTAGGAAATTTAG+AGG | - | 51474:8206-8225 | MS.gene040399:intron | 30.0% | |
| ACTTCTCCTCCAAAAAATTA+AGG | + | 51474:7579-7598 | MS.gene040399:intergenic | 30.0% | |
| AGTCTCTTCTAACTTAACTA+AGG | + | 51474:8599-8618 | MS.gene040399:intergenic | 30.0% | |
| ATAATCGAGGTCTGTATATT+TGG | + | 51474:8773-8792 | MS.gene040399:intergenic | 30.0% | |
| ATCAACATCAACAAAGAACA+TGG | - | 51474:10822-10841 | MS.gene040399:intron | 30.0% | |
| ATCTGAACATAATACAACGT+GGG | - | 51474:8918-8937 | MS.gene040399:intron | 30.0% | |
| ATTACCAACTCTTTCTCTTT+AGG | + | 51474:9384-9403 | MS.gene040399:intergenic | 30.0% | |
| ATTATGTGTTTAGCCAAACT+GGG | - | 51474:9894-9913 | MS.gene040399:intron | 30.0% | |
| CACGAGTTAAATCTTACTTT+GGG | + | 51474:10857-10876 | MS.gene040399:intergenic | 30.0% | |
| CATTCATTTAATGATGCACA+TGG | - | 51474:7262-7281 | MS.gene040399:intron | 30.0% | |
| CCACTAGCTACATTTAATAA+GGG | + | 51474:7818-7837 | MS.gene040399:intergenic | 30.0% | |
| CCAGCATTTATCAAATGATT+GGG | - | 51474:6965-6984 | MS.gene040399:CDS | 30.0% | |
| CTAATGCTAAAAGATATCAC+AGG | + | 51474:6310-6329 | MS.gene040399:intergenic | 30.0% | |
| CTAGCAGAATTTAATCCTAA+AGG | - | 51474:10463-10482 | MS.gene040399:intron | 30.0% | |
| CTTCTCAAAATTCAATCGAT+TGG | - | 51474:11221-11240 | MS.gene040399:intron | 30.0% | |
| CTTCTCCTCCAAAAAATTAA+GGG | + | 51474:7578-7597 | MS.gene040399:intergenic | 30.0% | |
| GACTATAATTTAGAGACAGA+GGG | + | 51474:7710-7729 | MS.gene040399:intergenic | 30.0% | |
| GATATTACAACATGGAGTAT+TGG | - | 51474:6142-6161 | MS.gene040399:CDS | 30.0% | |
| GCACAAAAACATTGTATTGA+AGG | + | 51474:10360-10379 | MS.gene040399:intergenic | 30.0% | |
| GCACGATTATTAAGGAAAAA+TGG | - | 51474:7743-7762 | MS.gene040399:intron | 30.0% | |
| TAATCGAGGTCTGTATATTT+GGG | + | 51474:8772-8791 | MS.gene040399:intergenic | 30.0% | |
| TACTTCTCTTATCAACATCA+TGG | + | 51474:11605-11624 | MS.gene040399:intergenic | 30.0% | |
| TATAAGGTAACTCGTATGTA+CGG | + | 51474:8261-8280 | MS.gene040399:intergenic | 30.0% | |
| TATCTGAACATAATACAACG+TGG | - | 51474:8917-8936 | MS.gene040399:intron | 30.0% | |
| TCAAAATTCAATCGATTGGA+AGG | - | 51474:11225-11244 | MS.gene040399:intron | 30.0% | |
| TCACGAGTTAAATCTTACTT+TGG | + | 51474:10858-10877 | MS.gene040399:intergenic | 30.0% | |
| TCCACTAGCTACATTTAATA+AGG | + | 51474:7819-7838 | MS.gene040399:intergenic | 30.0% | |
| TCCAGCATTTATCAAATGAT+TGG | - | 51474:6964-6983 | MS.gene040399:CDS | 30.0% | |
| TGGATAGGTTATATATTGGT+GGG | + | 51474:11485-11504 | MS.gene040399:intergenic | 30.0% | |
| TGGGAGTTAAATAACAACTT+GGG | - | 51474:6984-7003 | MS.gene040399:CDS | 30.0% | |
| TGTTAGAAACAAGGTTAGAT+TGG | - | 51474:9611-9630 | MS.gene040399:intron | 30.0% | |
| TTGGATAGGTTATATATTGG+TGG | + | 51474:11486-11505 | MS.gene040399:intergenic | 30.0% | |
| TTGGGAGTTAAATAACAACT+TGG | - | 51474:6983-7002 | MS.gene040399:CDS | 30.0% | |
| TTTATGTACCTCACCAATAA+AGG | + | 51474:10235-10254 | MS.gene040399:intergenic | 30.0% | |
| ! | AATCAATTTTCCTTCAGAGA+AGG | + | 51474:10127-10146 | MS.gene040399:intergenic | 30.0% |
| ! | ACAATTTTTACCTGAATTGG+TGG | + | 51474:10755-10774 | MS.gene040399:intergenic | 30.0% |
| ! | ACTAATCCTTCAAACCTTTT+TGG | - | 51474:8501-8520 | MS.gene040399:intron | 30.0% |
| ! | GAAAATTGACTCATGAGATT+AGG | + | 51474:6827-6846 | MS.gene040399:intergenic | 30.0% |
| ! | TCTATTTGTCTAAAACTGGA+AGG | - | 51474:10066-10085 | MS.gene040399:intron | 30.0% |
| ! | TTATGGTCTTGATTATTACG+TGG | - | 51474:8722-8741 | MS.gene040399:CDS | 30.0% |
| ! | TTCTTTGTTGATGTTGATTG+AGG | + | 51474:10820-10839 | MS.gene040399:intergenic | 30.0% |
| ! | TTGATGATCTGAAGATTGTT+AGG | - | 51474:6882-6901 | MS.gene040399:intron | 30.0% |
| ! | TTTTCGGCAAACATTAATCA+TGG | - | 51474:7482-7501 | MS.gene040399:intron | 30.0% |
| !! | CAATCGATTGAATTTTGAGA+AGG | + | 51474:11223-11242 | MS.gene040399:intergenic | 30.0% |
| !! | GGATTAGTTTCTACAATTAC+AGG | + | 51474:8489-8508 | MS.gene040399:intergenic | 30.0% |
| !!! | ACACCAATTTTTTGAGAAAG+GGG | + | 51474:6690-6709 | MS.gene040399:intergenic | 30.0% |
| !!! | GATAACCCTTAATTTTTTGG+AGG | - | 51474:7570-7589 | MS.gene040399:CDS | 30.0% |
| AAAAACAGCAGGTAGATCAT+AGG | + | 51474:9873-9892 | MS.gene040398:intergenic | 35.0% | |
| AAATACGGAGTTTGGTTAAG+TGG | + | 51474:6572-6591 | MS.gene040399:intergenic | 35.0% | |
| AACAACTTGGGCTAATCATT+TGG | - | 51474:6996-7015 | MS.gene040399:CDS | 35.0% | |
| AATTAATCTTCTGCCCAGTT+TGG | + | 51474:9910-9929 | MS.gene040399:intergenic | 35.0% | |
| ACTCCATGTTGTAATATCAC+CGG | + | 51474:6140-6159 | MS.gene040399:intergenic | 35.0% | |
| AGTCTTCAACATAAAACTGG+AGG | - | 51474:9268-9287 | MS.gene040399:intron | 35.0% | |
| ATAACAACAAATACACCCTC+CGG | - | 51474:7205-7224 | MS.gene040399:intron | 35.0% | |
| ATGAAGATAGGTAGATCATG+TGG | + | 51474:11513-11532 | MS.gene040399:intergenic | 35.0% | |
| ATGCACTATCATTACTTGTG+AGG | - | 51474:6518-6537 | MS.gene040399:intron | 35.0% | |
| ATGTGGCTTAGATAAGCAAT+AGG | + | 51474:10180-10199 | MS.gene040399:intergenic | 35.0% | |
| CCATGATCTGCTAGAATTAA+AGG | + | 51474:8991-9010 | MS.gene040399:intergenic | 35.0% | |
| CCATGTTAAAATACGGAGTT+TGG | + | 51474:6580-6599 | MS.gene040399:intergenic | 35.0% | |
| CCCAATCATTTGATAAATGC+TGG | + | 51474:6968-6987 | MS.gene040399:intergenic | 35.0% | |
| CCCTTATTAAATGTAGCTAG+TGG | - | 51474:7815-7834 | MS.gene040399:intron | 35.0% | |
| CCTTTAATTCTAGCAGATCA+TGG | - | 51474:8988-9007 | MS.gene040399:intron | 35.0% | |
| CGACTATAATTTAGAGACAG+AGG | + | 51474:7711-7730 | MS.gene040399:intergenic | 35.0% | |
| CTACCTATCTTCATTAGCTA+TGG | - | 51474:11519-11538 | MS.gene040399:intron | 35.0% | |
| CTTCTATGTTCTTACCCTTT+AGG | + | 51474:10481-10500 | MS.gene040399:intergenic | 35.0% | |
| GACTTTCTGTGTAAATATGC+AGG | - | 51474:9814-9833 | MS.gene040399:intron | 35.0% | |
| GATATCACAGGAAAAAGAGA+AGG | + | 51474:6298-6317 | MS.gene040399:intergenic | 35.0% | |
| GATTATGTGTTTAGCCAAAC+TGG | - | 51474:9893-9912 | MS.gene040399:intron | 35.0% | |
| TAACATGGTGACAAAAAGTG+CGG | - | 51474:6592-6611 | MS.gene040399:intron | 35.0% | |
| TACCTCACCAATAAAGGATT+TGG | + | 51474:10229-10248 | MS.gene040399:intergenic | 35.0% | |
| TGCTTATAATAATGACCGGA+GGG | + | 51474:7223-7242 | MS.gene040399:intergenic | 35.0% | |
| TGCTTATATTAGTGACCAGA+GGG | - | 51474:7340-7359 | MS.gene040399:intron | 35.0% | |
| TGTGGCTTAGATAAGCAATA+GGG | + | 51474:10179-10198 | MS.gene040399:intergenic | 35.0% | |
| TTGCTAGGTTTAAGTGTTAG+TGG | + | 51474:8357-8376 | MS.gene040399:intergenic | 35.0% | |
| TTGCTTATAATAATGACCGG+AGG | + | 51474:7224-7243 | MS.gene040399:intergenic | 35.0% | |
| TTGCTTATATTAGTGACCAG+AGG | - | 51474:7339-7358 | MS.gene040399:intron | 35.0% | |
| TTGGGCTAATCATTTGGTTA+AGG | - | 51474:7002-7021 | MS.gene040399:intron | 35.0% | |
| ! | ACATAAACATACTGGGTTAG+AGG | + | 51474:9079-9098 | MS.gene040399:intergenic | 35.0% |
| ! | ATAAACATACTGGGTTAGAG+GGG | + | 51474:9077-9096 | MS.gene040399:intergenic | 35.0% |
| ! | CATAAACATACTGGGTTAGA+GGG | + | 51474:9078-9097 | MS.gene040399:intergenic | 35.0% |
| ! | CTCATGCTGATTACATTATG+GGG | - | 51474:11646-11665 | MS.gene040399:CDS | 35.0% |
| ! | GCTCATGCTGATTACATTAT+GGG | - | 51474:11645-11664 | MS.gene040399:CDS | 35.0% |
| ! | GGTGATTTCAAGTACAAGTT+GGG | + | 51474:8700-8719 | MS.gene040399:intergenic | 35.0% |
| ! | GTACTTGAAATCACCGATTA+TGG | - | 51474:8705-8724 | MS.gene040399:CDS | 35.0% |
| ! | TGCTCATGCTGATTACATTA+TGG | - | 51474:11644-11663 | MS.gene040399:CDS | 35.0% |
| !! | ATTAAAGGCAAGTCTTGTTC+TGG | + | 51474:8976-8995 | MS.gene040399:intergenic | 35.0% |
| !! | ATTACAACATGGAGTATTGG+TGG | - | 51474:6145-6164 | MS.gene040399:CDS | 35.0% |
| !! | GAATTTTGAGAAGGGAGTTA+GGG | + | 51474:11214-11233 | MS.gene040399:intergenic | 35.0% |
| !! | TGAATTTTGAGAAGGGAGTT+AGG | + | 51474:11215-11234 | MS.gene040399:intergenic | 35.0% |
| !! | TTTTGGAAGAAACAATGGCA+GGG | + | 51474:8800-8819 | MS.gene040399:intergenic | 35.0% |
| !! | TTTTTGGAAGAAACAATGGC+AGG | + | 51474:8801-8820 | MS.gene040399:intergenic | 35.0% |
| !!! | CCAAACTCCGTATTTTAACA+TGG | - | 51474:6577-6596 | MS.gene040399:intron | 35.0% |
| !!! | CTTTAGGACCTCTTGTTTTT+AGG | + | 51474:9368-9387 | MS.gene040399:intergenic | 35.0% |
| !!! | GCGTGATAGTACTGTTTTTT+TGG | + | 51474:7416-7435 | MS.gene040399:intergenic | 35.0% |
| AACAAAGAACATGGTGCACT+TGG | - | 51474:10831-10850 | MS.gene040399:intron | 40.0% | |
| AACAATGTCCGTGTTTCACT+TGG | + | 51474:10299-10318 | MS.gene040399:intergenic | 40.0% | |
| AACTATGCAGTTGTTAGACG+TGG | - | 51474:11396-11415 | MS.gene040399:intron | 40.0% | |
| AAGTCGTAGCAGTCAATTCT+AGG | + | 51474:10633-10652 | MS.gene040399:intergenic | 40.0% | |
| ACTATGCAGTTGTTAGACGT+GGG | - | 51474:11397-11416 | MS.gene040399:intron | 40.0% | |
| AGAGTTGAAGGTAGAAATGG+TGG | - | 51474:6101-6120 | MS.gene040399:CDS | 40.0% | |
| AGCACATAGAGACTTGAGAA+AGG | + | 51474:10607-10626 | MS.gene040399:intergenic | 40.0% | |
| AGCCAAATCCTTTATTGGTG+AGG | - | 51474:10224-10243 | MS.gene040399:intron | 40.0% | |
| AGGTAGATCATGTGGAATGT+TGG | + | 51474:11505-11524 | MS.gene040399:intergenic | 40.0% | |
| AGGTCCTAAAGAGAAAGAGT+TGG | - | 51474:9377-9396 | MS.gene040399:intron | 40.0% | |
| AGTCGTAGCAGTCAATTCTA+GGG | + | 51474:10632-10651 | MS.gene040399:intergenic | 40.0% | |
| ATTCCAGAAGGTAGAGTTGA+AGG | - | 51474:6089-6108 | MS.gene040399:CDS | 40.0% | |
| CAACCGGTGATATTACAACA+TGG | - | 51474:6134-6153 | MS.gene040399:CDS | 40.0% | |
| CAGGAGCAACAACATGTTAA+TGG | - | 51474:8234-8253 | MS.gene040399:intron | 40.0% | |
| CCTATCTTCATTAGCTATGG+AGG | - | 51474:11522-11541 | MS.gene040399:intron | 40.0% | |
| CCTCCATAGCTAATGAAGAT+AGG | + | 51474:11525-11544 | MS.gene040399:intergenic | 40.0% | |
| CGTCCCCTTTCTCAAAAAAT+TGG | - | 51474:6684-6703 | MS.gene040399:intron | 40.0% | |
| GAGTTGAAGGTAGAAATGGT+GGG | - | 51474:6102-6121 | MS.gene040399:CDS | 40.0% | |
| GATCATGTGGAATGTTGGAT+AGG | + | 51474:11500-11519 | MS.gene040399:intergenic | 40.0% | |
| GATTATTACGTGGTCAAGCA+TGG | - | 51474:8732-8751 | MS.gene040399:CDS | 40.0% | |
| GGGCAGAAGATTAATTACGT+TGG | - | 51474:9914-9933 | MS.gene040399:intron | 40.0% | |
| GGTAGAGTTGAAGGTAGAAA+TGG | - | 51474:6098-6117 | MS.gene040399:CDS | 40.0% | |
| GTTGCAGCCAAATCCTTTAT+TGG | - | 51474:10219-10238 | MS.gene040399:intron | 40.0% | |
| GTTTGGATTGCTAACACTAG+AGG | - | 51474:9018-9037 | MS.gene040399:intron | 40.0% | |
| TAAAACTGGAAGGCTGTGTT+TGG | - | 51474:10076-10095 | MS.gene040399:intron | 40.0% | |
| TCATCACACCAAGTGAAACA+CGG | - | 51474:10288-10307 | MS.gene040399:intron | 40.0% | |
| TTCGTAAATGCCACCAATTC+AGG | - | 51474:10742-10761 | MS.gene040399:intron | 40.0% | |
| ! | AACACGGACATTGTTTCTCT+CGG | - | 51474:10304-10323 | MS.gene040399:intron | 40.0% |
| ! | CGGTGATTTCAAGTACAAGT+TGG | + | 51474:8701-8720 | MS.gene040399:intergenic | 40.0% |
| ! | GACTTGATGACTGCATTAAC+TGG | - | 51474:10648-10667 | MS.gene040399:intron | 40.0% |
| ! | GTGTAAATATGCAGGCCTTT+TGG | - | 51474:9822-9841 | MS.gene040399:intron | 40.0% |
| !! | AGGAAATTTAGAGGAGTGTC+AGG | - | 51474:8215-8234 | MS.gene040399:intron | 40.0% |
| !! | ATAAAGCTGCTGATTTCAGC+TGG | + | 51474:10152-10171 | MS.gene040399:intergenic | 40.0% |
| !! | ATGGAGTATTGGTGGTAAGT+TGG | - | 51474:6153-6172 | MS.gene040399:CDS | 40.0% |
| !! | CAGATCATGGCTTTGATGTT+TGG | - | 51474:9001-9020 | MS.gene040399:intron | 40.0% |
| !!! | ATATGCAGGCCTTTTGGAAT+TGG | - | 51474:9828-9847 | MS.gene040399:intron | 40.0% |
| ACATAATACAACGTGGGTGC+AGG | - | 51474:8924-8943 | MS.gene040399:intron | 45.0% | |
| ACGCTGCTGCATGTTGAATT+CGG | - | 51474:8561-8580 | MS.gene040399:intron | 45.0% | |
| ATTCCGCGTCTGTTACATTG+TGG | - | 51474:6616-6635 | MS.gene040399:intron | 45.0% | |
| CTACCTTCAACTCTACCTTC+TGG | + | 51474:6095-6114 | MS.gene040399:intergenic | 45.0% | |
| CTATGCAGTTGTTAGACGTG+GGG | - | 51474:11398-11417 | MS.gene040399:intron | 45.0% | |
| GCATGTTGAATTCGGACTCA+AGG | - | 51474:8569-8588 | MS.gene040399:intron | 45.0% | |
| GTCCCAAGACCAATTCCAAA+AGG | + | 51474:9840-9859 | MS.gene040399:intergenic | 45.0% | |
| TAATTACGTTGGCCACTCTC+TGG | - | 51474:9925-9944 | MS.gene040399:intron | 45.0% | |
| TCTCGGACACCAATATGTGT+CGG | - | 51474:10321-10340 | MS.gene040399:intron | 45.0% | |
| TGACTTCCTTAACCAGTGTC+CGG | - | 51474:7153-7172 | MS.gene040399:CDS | 45.0% | |
| TTGACCCTTAACAAGTGTCC+CGG | + | 51474:7049-7068 | MS.gene040399:intergenic | 45.0% | |
| ! | AAGGTAGAAATGGTGGGACT+AGG | - | 51474:6108-6127 | MS.gene040399:CDS | 45.0% |
| ! | AGTAATGGAGTACCAGAGAG+TGG | + | 51474:9940-9959 | MS.gene040399:intergenic | 45.0% |
| ! | ATTTTCTCGACTACACCCTC+TGG | + | 51474:7358-7377 | MS.gene040399:intergenic | 45.0% |
| ! | GACAGAGGGAGTATGAGAAA+AGG | + | 51474:7696-7715 | MS.gene040399:intergenic | 45.0% |
| ! | GCTTTAGCTTCCTTCTCTGA+AGG | - | 51474:10114-10133 | MS.gene040399:intron | 45.0% |
| ! | GGTACATTTTGAGCCTGCAA+AGG | - | 51474:6066-6085 | MS.gene040399:CDS | 45.0% |
| !! | AAAGGCAAGTCTTGTTCTGG+AGG | + | 51474:8973-8992 | MS.gene040399:intergenic | 45.0% |
| !! | AAGGCAAGTCTTGTTCTGGA+GGG | + | 51474:8972-8991 | MS.gene040399:intergenic | 45.0% |
| !! | GACTTGAGAAAGGCATCAAC+AGG | + | 51474:10597-10616 | MS.gene040399:intergenic | 45.0% |
| !! | TACCTTCTGGAATCCTTTGC+AGG | + | 51474:6082-6101 | MS.gene040399:intergenic | 45.0% |
| !!! | AGGCCTTTTGGAATTGGTCT+TGG | - | 51474:9834-9853 | MS.gene040399:intron | 45.0% |
| !!! | GGCCTTTTGGAATTGGTCTT+GGG | - | 51474:9835-9854 | MS.gene040399:intron | 45.0% |
| !! | AAATATATAAGTTTATAAAA+TGG | - | 51474:6366-6385 | MS.gene040399:intron | 5.0% |
| !! | AATATATAAAATATTAATTG+GGG | + | 51474:10544-10563 | MS.gene040399:intergenic | 5.0% |
| !! | ATTATAATTGAAATATTTAA+AGG | + | 51474:11136-11155 | MS.gene040399:intergenic | 5.0% |
| !! | TTAAATATTTCAATTATAAT+TGG | - | 51474:11136-11155 | MS.gene040399:intron | 5.0% |
| AATACAACGTGGGTGCAGGA+TGG | - | 51474:8928-8947 | MS.gene040399:intron | 50.0% | |
| AATGTTAACCAGTGCCCACC+CGG | - | 51474:7027-7046 | MS.gene040399:intron | 50.0% | |
| ACGCCACAATGTAACAGACG+CGG | + | 51474:6622-6641 | MS.gene040399:intergenic | 50.0% | |
| AGAAGGGAGTTAGGGCACAT+TGG | + | 51474:11206-11225 | MS.gene040399:intergenic | 50.0% | |
| AGCCACATGAACACTGCACT+TGG | - | 51474:10192-10211 | MS.gene040399:intron | 50.0% | |
| AGCCTGCAAAGGATTCCAGA+AGG | - | 51474:6077-6096 | MS.gene040399:CDS | 50.0% | |
| AGGGGTCCAATGAGACATGT+CGG | + | 51474:9059-9078 | MS.gene040399:intergenic | 50.0% | |
| CACCAAGTGCAGTGTTCATG+TGG | + | 51474:10197-10216 | MS.gene040399:intergenic | 50.0% | |
| GACTTCCTTAACCAGTGTCC+GGG | - | 51474:7154-7173 | MS.gene040399:CDS | 50.0% | |
| TAGTCGCCGACATGTCTCAT+TGG | - | 51474:9050-9069 | MS.gene040399:intron | 50.0% | |
| TGACCCTTAACAAGTGTCCC+GGG | + | 51474:7048-7067 | MS.gene040399:intergenic | 50.0% | |
| TGGTGGGACTAGGAAACAAC+CGG | - | 51474:6118-6137 | MS.gene040399:CDS | 50.0% | |
| !! | GGTCTTGTTAACCAGTGTCC+CGG | + | 51474:7175-7194 | MS.gene040399:intergenic | 50.0% |
| ACTGGAAGGCTGTGTTTGGC+AGG | - | 51474:10080-10099 | MS.gene040399:intron | 55.0% | |
| ATGGCAGGGCTGCATAATCG+AGG | + | 51474:8786-8805 | MS.gene040399:intergenic | 55.0% | |
| ATGTTAACCAGTGCCCACCC+GGG | - | 51474:7028-7047 | MS.gene040399:intron | 55.0% | |
| CCTTAACAAGTGTCCCGGGT+GGG | + | 51474:7044-7063 | MS.gene040399:intergenic | 55.0% | |
| CTGGAAGGCTGTGTTTGGCA+GGG | - | 51474:10081-10100 | MS.gene040399:intron | 55.0% | |
| GGGAGTTAGGGCACATTGGT+CGG | + | 51474:11202-11221 | MS.gene040399:intergenic | 55.0% | |
| TTAACCAGTGTCCCGGACAC+TGG | + | 51474:7168-7187 | MS.gene040399:intergenic | 55.0% | |
| TTAACCAGTGTCCGGGACAC+TGG | - | 51474:7161-7180 | MS.gene040399:CDS | 55.0% | |
| ! | AGTGTCCCGGACACTGGTTA+AGG | + | 51474:7162-7181 | MS.gene040399:intergenic | 55.0% |
| ! | CCACCCGGGACACTTGTTAA+GGG | - | 51474:7042-7061 | MS.gene040399:intron | 55.0% |
| CCCTTAACAAGTGTCCCGGG+TGG | + | 51474:7045-7064 | MS.gene040399:intergenic | 60.0% | |
| GGGTGCAGGATGGCATGACA+TGG | - | 51474:8938-8957 | MS.gene040399:intron | 60.0% | |
| ! | CCCACCCGGGACACTTGTTA+AGG | - | 51474:7041-7060 | MS.gene040399:intron | 60.0% |
| CAAGTGTCCCGGGTGGGCAC+TGG | + | 51474:7038-7057 | MS.gene040399:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51474 | gene | 6050 | 11731 | 6050 | ID=MS.gene040399 |
| 51474 | mRNA | 6050 | 11731 | 6050 | ID=MS.gene040399.t1;Parent=MS.gene040399 |
| 51474 | exon | 11615 | 11731 | 11615 | ID=MS.gene040399.t1.exon1;Parent=MS.gene040399.t1 |
| 51474 | CDS | 11615 | 11731 | 11615 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 8695 | 8835 | 8695 | ID=MS.gene040399.t1.exon2;Parent=MS.gene040399.t1 |
| 51474 | CDS | 8695 | 8835 | 8695 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 7835 | 7945 | 7835 | ID=MS.gene040399.t1.exon3;Parent=MS.gene040399.t1 |
| 51474 | CDS | 7835 | 7945 | 7835 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 7536 | 7679 | 7536 | ID=MS.gene040399.t1.exon4;Parent=MS.gene040399.t1 |
| 51474 | CDS | 7536 | 7679 | 7536 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 7296 | 7336 | 7296 | ID=MS.gene040399.t1.exon5;Parent=MS.gene040399.t1 |
| 51474 | CDS | 7296 | 7336 | 7296 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 7112 | 7191 | 7112 | ID=MS.gene040399.t1.exon6;Parent=MS.gene040399.t1 |
| 51474 | CDS | 7112 | 7191 | 7112 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 6922 | 7017 | 6922 | ID=MS.gene040399.t1.exon7;Parent=MS.gene040399.t1 |
| 51474 | CDS | 6922 | 7017 | 6922 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| 51474 | exon | 6050 | 6375 | 6050 | ID=MS.gene040399.t1.exon8;Parent=MS.gene040399.t1 |
| 51474 | CDS | 6050 | 6375 | 6050 | ID=cds.MS.gene040399.t1;Parent=MS.gene040399.t1 |
| Gene Sequence |
| Protein sequence |
