Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060313.t1 | XP_013470044.1 | 93.9 | 407 | 23 | 1 | 1 | 407 | 1 | 405 | 7.70E-221 | 776.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060313.t1 | Q71DJ5 | 60.2 | 402 | 148 | 2 | 5 | 406 | 3 | 392 | 6.1e-142 | 505.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060313.t1 | A0A072VQK3 | 93.9 | 407 | 23 | 1 | 1 | 407 | 1 | 405 | 5.5e-221 | 776.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060313 | MS.gene060315 | 0.973846 | 3.99E-137 | -1.69E-46 |
| MS.gene060313 | MS.gene73248 | 0.807195 | 5.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060313 | MS.gene040400 | PPI |
| MS.gene060064 | MS.gene060313 | PPI |
| MS.gene060063 | MS.gene060313 | PPI |
| MS.gene040398 | MS.gene060313 | PPI |
| MS.gene060313 | MS.gene62511 | PPI |
| MS.gene040399 | MS.gene060313 | PPI |
| MS.gene79184 | MS.gene060313 | PPI |
| MS.gene060065 | MS.gene060313 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060313.t1 | MTR_1g107330 | 98.280 | 407 | 5 | 2 | 1 | 407 | 1 | 405 | 0.0 | 825 |
| MS.gene060313.t1 | MTR_1g107330 | 98.000 | 300 | 4 | 2 | 1 | 300 | 1 | 298 | 0.0 | 605 |
| MS.gene060313.t1 | MTR_5g084950 | 40.053 | 377 | 208 | 5 | 29 | 399 | 36 | 400 | 4.77e-105 | 316 |
| MS.gene060313.t1 | MTR_7g081050 | 40.691 | 376 | 199 | 6 | 35 | 400 | 43 | 404 | 8.38e-102 | 308 |
| MS.gene060313.t1 | MTR_3g081060 | 41.711 | 374 | 200 | 5 | 35 | 400 | 47 | 410 | 4.17e-101 | 306 |
| MS.gene060313.t1 | MTR_7g029365 | 39.314 | 379 | 217 | 4 | 29 | 401 | 41 | 412 | 1.27e-100 | 305 |
| MS.gene060313.t1 | MTR_3g081040 | 40.214 | 373 | 206 | 5 | 35 | 400 | 43 | 405 | 3.90e-100 | 304 |
| MS.gene060313.t1 | MTR_6g033965 | 42.473 | 372 | 196 | 5 | 35 | 400 | 44 | 403 | 6.82e-99 | 300 |
| MS.gene060313.t1 | MTR_7g081060 | 40.162 | 371 | 205 | 5 | 35 | 399 | 44 | 403 | 9.24e-96 | 293 |
| MS.gene060313.t1 | MTR_3g080980 | 39.516 | 372 | 209 | 6 | 35 | 400 | 43 | 404 | 9.15e-91 | 280 |
| MS.gene060313.t1 | MTR_6g033975 | 41.176 | 374 | 197 | 8 | 35 | 400 | 44 | 402 | 1.77e-89 | 276 |
| MS.gene060313.t1 | MTR_6g023740 | 33.933 | 389 | 243 | 6 | 19 | 399 | 30 | 412 | 1.91e-85 | 266 |
| MS.gene060313.t1 | MTR_6g023715 | 33.247 | 388 | 228 | 7 | 19 | 399 | 30 | 393 | 6.51e-81 | 254 |
| MS.gene060313.t1 | MTR_6g023750 | 32.961 | 358 | 226 | 6 | 50 | 399 | 4 | 355 | 8.38e-73 | 232 |
| MS.gene060313.t1 | MTR_7g029365 | 41.026 | 273 | 153 | 2 | 29 | 300 | 41 | 306 | 3.27e-72 | 229 |
| MS.gene060313.t1 | MTR_0595s0010 | 39.459 | 185 | 105 | 3 | 35 | 218 | 46 | 224 | 3.48e-43 | 154 |
| MS.gene060313.t1 | MTR_5g006650 | 43.382 | 136 | 68 | 2 | 88 | 219 | 63 | 193 | 5.09e-33 | 124 |
| MS.gene060313.t1 | MTR_5g049630 | 65.385 | 52 | 11 | 1 | 269 | 320 | 34 | 78 | 3.12e-15 | 71.6 |
| MS.gene060313.t1 | MTR_5g049820 | 90.625 | 32 | 3 | 0 | 269 | 300 | 903 | 934 | 1.32e-12 | 70.1 |
| MS.gene060313.t1 | MTR_7g451290 | 85.294 | 34 | 2 | 1 | 270 | 300 | 65 | 98 | 2.13e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060313.t1 | AT2G15230 | 63.271 | 373 | 126 | 1 | 34 | 406 | 31 | 392 | 0.0 | 511 |
| MS.gene060313.t1 | AT5G14180 | 36.816 | 402 | 234 | 7 | 6 | 399 | 26 | 415 | 7.74e-95 | 291 |
| MS.gene060313.t1 | AT5G14180 | 40.065 | 307 | 178 | 3 | 99 | 399 | 9 | 315 | 2.17e-82 | 255 |
| MS.gene060313.t1 | AT5G14180 | 40.000 | 305 | 177 | 3 | 101 | 399 | 2 | 306 | 3.53e-82 | 254 |
| MS.gene060313.t1 | AT5G14180 | 38.043 | 276 | 162 | 4 | 28 | 300 | 42 | 311 | 1.53e-67 | 217 |
| MS.gene060313.t1 | AT5G14180 | 36.585 | 246 | 147 | 4 | 28 | 270 | 42 | 281 | 3.19e-54 | 182 |
Find 90 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGAGTTGGTTGTTGTTT+GGG | 0.186644 | 1.2:-79865048 | None:intergenic |
| TTGCCTTTGTTGATGGCTTA+TGG | 0.191042 | 1.2:+79870185 | MS.gene060313:CDS |
| CAGATCATTGCCTTTGTTGA+TGG | 0.268391 | 1.2:+79870178 | MS.gene060313:CDS |
| ACCTTCTCCAAGTACGATTA+TGG | 0.280197 | 1.2:+79870089 | MS.gene060313:CDS |
| ACAAAGGATGGTTTCTTGTT+AGG | 0.282718 | 1.2:+79865232 | MS.gene060313:CDS |
| ACAGAGAGTTGGTTGTTGTT+TGG | 0.284882 | 1.2:-79865049 | None:intergenic |
| TGCCTTTGTTGATGGCTTAT+GGG | 0.286118 | 1.2:+79870186 | MS.gene060313:CDS |
| ATATGATCCAAGTATGAAAT+TGG | 0.303318 | 1.2:-79867588 | None:intergenic |
| GCTTCTCCATGGCCTATTCA+TGG | 0.309670 | 1.2:+79865342 | MS.gene060313:CDS |
| ATGCGGCTAAGGTCAAATTT+TGG | 0.319645 | 1.2:-79870152 | None:intergenic |
| TCTGTCTCCAATTTCATACT+TGG | 0.350785 | 1.2:+79867581 | MS.gene060313:CDS |
| ATCAGTTTCTTCAAGTCAAT+GGG | 0.364667 | 1.2:+79870356 | MS.gene060313:CDS |
| CATCAGTTTCTTCAAGTCAA+TGG | 0.364835 | 1.2:+79870355 | MS.gene060313:CDS |
| AACTCAAAGTTATTTGTAGT+TGG | 0.368834 | 1.2:+79867393 | MS.gene060313:CDS |
| GGATCATATTAGTGCACCTT+TGG | 0.375065 | 1.2:+79867602 | MS.gene060313:CDS |
| TGCACCTTTGGTACTAAGAA+TGG | 0.380394 | 1.2:+79867614 | MS.gene060313:CDS |
| ACTCAAAGTTATTTGTAGTT+GGG | 0.404963 | 1.2:+79867394 | MS.gene060313:CDS |
| ATCTTTATCAGAGAAGAATA+AGG | 0.417364 | 1.2:+79866236 | MS.gene060313:CDS |
| ACATAAGGAAATCAAGAGAT+TGG | 0.417842 | 1.2:-79867904 | None:intergenic |
| GACATGCTGTCATCCATTAC+AGG | 0.418206 | 1.2:+79867948 | MS.gene060313:CDS |
| GTGGTTTATCTTGAAAACTA+TGG | 0.418535 | 1.2:+79870278 | MS.gene060313:CDS |
| AGTAAGTAGTAACCATGAAT+AGG | 0.420033 | 1.2:-79865354 | None:intergenic |
| AAATACACCAGAACAATCAT+TGG | 0.421081 | 1.2:+79866137 | MS.gene060313:CDS |
| AAGCTTTCCATAATCGTACT+TGG | 0.430219 | 1.2:-79870096 | None:intergenic |
| GGAAAAGATGCACATTGATC+AGG | 0.447013 | 1.2:+79867635 | MS.gene060313:CDS |
| GATTCCGAAGGATAAGAGTA+TGG | 0.447146 | 1.2:-79864992 | None:intergenic |
| GGGTGCGCTGCCGCCGTCGA+AGG | 0.448632 | 1.2:-79865025 | None:intergenic |
| CATCAACAAAGGCAATGATC+TGG | 0.449214 | 1.2:-79870177 | None:intergenic |
| GGCTTCATCCTTGCGGATCA+AGG | 0.449610 | 1.2:+79866159 | MS.gene060313:CDS |
| TTCATCAGCTGAATTTCAAA+AGG | 0.450695 | 1.2:+79867761 | MS.gene060313:CDS |
| GACTTGAAGAAACTGATGAT+AGG | 0.472607 | 1.2:-79870350 | None:intergenic |
| AGAGAGTTGGTTGTTGTTTG+GGG | 0.478775 | 1.2:-79865047 | None:intergenic |
| ATGAAGCCCAATGATTGTTC+TGG | 0.479529 | 1.2:-79866144 | None:intergenic |
| AGGCCATGGAGAAGCAGAAC+CGG | 0.486022 | 1.2:-79865334 | None:intergenic |
| GCCTTTGTTGATGGCTTATG+GGG | 0.492263 | 1.2:+79870187 | MS.gene060313:CDS |
| ATGATCTGGGTATGCGGCTA+AGG | 0.493826 | 1.2:-79870163 | None:intergenic |
| ATTGCCATACTCTTATCCTT+CGG | 0.496634 | 1.2:+79864988 | MS.gene060313:CDS |
| TCATTTCCGCAAGATCGTAC+AGG | 0.501400 | 1.2:-79867347 | None:intergenic |
| ATTTGTAGTTGGGCATTCAC+AGG | 0.502438 | 1.2:+79867404 | MS.gene060313:CDS |
| CATGGAACATACTCTGGAAA+AGG | 0.507066 | 1.2:-79869017 | None:intergenic |
| CCTCCGGTTCTGCTTCTCCA+TGG | 0.509579 | 1.2:+79865331 | MS.gene060313:CDS |
| TTACTTTCAGATTGAAACAA+AGG | 0.517112 | 1.2:+79865216 | MS.gene060313:intron |
| TCAACCGGATATAGTAGAAA+AGG | 0.520659 | 1.2:+79867542 | MS.gene060313:CDS |
| TGTTCAGATGATTGCTACAA+TGG | 0.521008 | 1.2:+79867735 | MS.gene060313:intron |
| GTTCAGATGATTGCTACAAT+GGG | 0.525033 | 1.2:+79867736 | MS.gene060313:intron |
| CTGATAAAGATTTATGTCCA+TGG | 0.529374 | 1.2:-79866224 | None:intergenic |
| TGAGAGACATGAACCTGTAA+TGG | 0.530576 | 1.2:-79867961 | None:intergenic |
| ACAACAACAACGAGGTCCTC+CGG | 0.531545 | 1.2:+79865315 | MS.gene060313:CDS |
| TACTATATCCGGTTGAGTGA+AGG | 0.532690 | 1.2:-79867535 | None:intergenic |
| ATCAACAAAGGCAATGATCT+GGG | 0.532780 | 1.2:-79870176 | None:intergenic |
| AGAGTTGGTTGTTGTTTGGG+GGG | 0.532934 | 1.2:-79865045 | None:intergenic |
| ACTTGAAGAAACTGATGATA+GGG | 0.535072 | 1.2:-79870349 | None:intergenic |
| GCAGTTCCTTGAGTGTGTGC+TGG | 0.538191 | 1.2:-79870241 | None:intergenic |
| TCCATAATCGTACTTGGAGA+AGG | 0.540057 | 1.2:-79870090 | None:intergenic |
| AATACACCAGAACAATCATT+GGG | 0.543527 | 1.2:+79866138 | MS.gene060313:CDS |
| TTACCCTTGCTCTGAATATG+TGG | 0.550867 | 1.2:+79865095 | MS.gene060313:CDS |
| ATGAGTTCATCACAGAGAGT+TGG | 0.551768 | 1.2:-79865060 | None:intergenic |
| GAGAGTTGGTTGTTGTTTGG+GGG | 0.553474 | 1.2:-79865046 | None:intergenic |
| TTTCAGATTGAAACAAAGGA+TGG | 0.556157 | 1.2:+79865220 | MS.gene060313:intron |
| ACTTAGACGAGTATCACATA+AGG | 0.561077 | 1.2:-79867919 | None:intergenic |
| ATCATTGGGCTTCATCCTTG+CGG | 0.568286 | 1.2:+79866152 | MS.gene060313:CDS |
| TAGTAACCATGAATAGGCCA+TGG | 0.571896 | 1.2:-79865348 | None:intergenic |
| TAAACCACCTCAGGTGTGGA+TGG | 0.574032 | 1.2:-79870263 | None:intergenic |
| CGTGGAACACGTTGGAGCCA+TGG | 0.574865 | 1.2:+79866207 | MS.gene060313:CDS |
| CATTTCCGCAAGATCGTACA+GGG | 0.575973 | 1.2:-79867346 | None:intergenic |
| GATGAACTCATTCTTCCCGC+TGG | 0.577409 | 1.2:+79865072 | MS.gene060313:CDS |
| ACTTGGAGAAGGTACCTTTG+CGG | 0.586271 | 1.2:-79870079 | None:intergenic |
| AATACCACATATTCAGAGCA+AGG | 0.587448 | 1.2:-79865099 | None:intergenic |
| AAGATAAACCACCTCAGGTG+TGG | 0.587694 | 1.2:-79870267 | None:intergenic |
| TCAGAGCAAGGGTAACCAGC+GGG | 0.589366 | 1.2:-79865087 | None:intergenic |
| ATTAGCCCTGTACGATCTTG+CGG | 0.594612 | 1.2:+79867341 | MS.gene060313:CDS |
| TTGCTTCAACGAGTCACGCG+TGG | 0.604439 | 1.2:+79868942 | MS.gene060313:CDS |
| ATCGCTCACTCCTTCGACGG+CGG | 0.604774 | 1.2:+79865015 | MS.gene060313:CDS |
| ACAATCAGGCAGGTGATGCA+TGG | 0.608662 | 1.2:+79866109 | MS.gene060313:intron |
| TGATTTCCAGCACACACTCA+AGG | 0.617911 | 1.2:+79870235 | MS.gene060313:CDS |
| ATCATCGCTCACTCCTTCGA+CGG | 0.619683 | 1.2:+79865012 | MS.gene060313:CDS |
| GGAACATACTCTGGAAAAGG+TGG | 0.634034 | 1.2:-79869014 | None:intergenic |
| ACTGCCATCCACACCTGAGG+TGG | 0.635259 | 1.2:+79870259 | MS.gene060313:CDS |
| AAGGCAATGATCTGGGTATG+CGG | 0.641163 | 1.2:-79870169 | None:intergenic |
| CATCAAAACCTTGATCCGCA+AGG | 0.641366 | 1.2:-79866167 | None:intergenic |
| TGTTCTCCAGTGATCCGCAA+AGG | 0.657082 | 1.2:+79870065 | MS.gene060313:intron |
| ATACCACATATTCAGAGCAA+GGG | 0.659010 | 1.2:-79865098 | None:intergenic |
| CCTTTGTTGATGGCTTATGG+GGG | 0.663104 | 1.2:+79870188 | MS.gene060313:CDS |
| GGAACTGCCATCCACACCTG+AGG | 0.674091 | 1.2:+79870256 | MS.gene060313:CDS |
| TTCAGAGCAAGGGTAACCAG+CGG | 0.686767 | 1.2:-79865088 | None:intergenic |
| CCATGGAGAAGCAGAACCGG+AGG | 0.690082 | 1.2:-79865331 | None:intergenic |
| TCAGTTTCTTCAAGTCAATG+GGG | 0.699933 | 1.2:+79870357 | MS.gene060313:CDS |
| GGAGTGAGCGATGATTCCGA+AGG | 0.727835 | 1.2:-79865004 | None:intergenic |
| GAAATGTGCGTGGAACACGT+TGG | 0.739556 | 1.2:+79866199 | MS.gene060313:CDS |
| GTTTGGGTAGGAAATGTGCG+TGG | 0.748523 | 1.2:+79866189 | MS.gene060313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTGATGTAAAAAATAT+AGG | + | chr1.2:79868267-79868286 | MS.gene060313:intron | 10.0% |
| !!! | AGAAAAAAACAATTTTATTT+AGG | + | chr1.2:79868654-79868673 | MS.gene060313:intron | 10.0% |
| !!! | ATATTTTTTACATCAATAAT+GGG | - | chr1.2:79868267-79868286 | None:intergenic | 10.0% |
| !!! | TATATTTTTTACATCAATAA+TGG | - | chr1.2:79868268-79868287 | None:intergenic | 10.0% |
| !! | AATGAAAAGTTATTTATGTT+TGG | - | chr1.2:79865819-79865838 | None:intergenic | 15.0% |
| !! | AATGCTTGAAAATATTTATA+GGG | + | chr1.2:79866487-79866506 | MS.gene060313:intron | 15.0% |
| !! | ATAAATTAATATATGTGTAG+CGG | - | chr1.2:79868302-79868321 | None:intergenic | 15.0% |
| !! | ATGACATTAAATTAAATTAC+AGG | + | chr1.2:79868910-79868929 | MS.gene060313:intron | 15.0% |
| !! | TAATGCTTGAAAATATTTAT+AGG | + | chr1.2:79866486-79866505 | MS.gene060313:intron | 15.0% |
| !! | TCTATTTATAAATTGCTAAA+AGG | + | chr1.2:79869904-79869923 | MS.gene060313:intron | 15.0% |
| !!! | AATTAGTTTCAAACTTTAAA+AGG | - | chr1.2:79866043-79866062 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr1.2:79865497-79865516 | MS.gene060313:intron | 15.0% |
| !!! | TCTTTTCAATTGTAAAATAT+GGG | + | chr1.2:79866334-79866353 | MS.gene060313:intron | 15.0% |
| !!! | TTCTTTTCAATTGTAAAATA+TGG | + | chr1.2:79866333-79866352 | MS.gene060313:intron | 15.0% |
| !! | AAAGATATGAATTAGAAAGA+AGG | - | chr1.2:79865158-79865177 | None:intergenic | 20.0% |
| !! | AAGATATGAATTAGAAAGAA+GGG | - | chr1.2:79865157-79865176 | None:intergenic | 20.0% |
| !! | ATTTAAAAGATATGCATTGT+CGG | - | chr1.2:79869549-79869568 | None:intergenic | 20.0% |
| !! | CATAGTGTATTAGTATAATA+AGG | + | chr1.2:79865543-79865562 | MS.gene060313:intron | 20.0% |
| !! | GATAGTAGAAGAATAAATAA+AGG | - | chr1.2:79868429-79868448 | None:intergenic | 20.0% |
| !! | TTAAAAATTCACTTTGTATG+CGG | + | chr1.2:79865943-79865962 | MS.gene060313:intron | 20.0% |
| !!! | AAATTCATTTTGCAATTTTG+TGG | - | chr1.2:79866410-79866429 | None:intergenic | 20.0% |
| !!! | AATATTTGTACAACCATTTT+GGG | + | chr1.2:79866514-79866533 | MS.gene060313:intron | 20.0% |
| !!! | ACAAGTTCTAAATGTATTAA+GGG | + | chr1.2:79866720-79866739 | MS.gene060313:intron | 20.0% |
| !!! | ACTATATTCTGTCATTTTTT+AGG | + | chr1.2:79865974-79865993 | MS.gene060313:intron | 20.0% |
| !!! | ATTATGAGAAGAGTATTATT+TGG | - | chr1.2:79868097-79868116 | None:intergenic | 20.0% |
| !!! | CTATATTCTGTCATTTTTTA+GGG | + | chr1.2:79865975-79865994 | MS.gene060313:intron | 20.0% |
| !!! | CTCATTTTAATCAATAACTT+AGG | + | chr1.2:79868805-79868824 | MS.gene060313:intron | 20.0% |
| !!! | TAATATTTGTACAACCATTT+TGG | + | chr1.2:79866513-79866532 | MS.gene060313:intron | 20.0% |
| !!! | TACAAGTTCTAAATGTATTA+AGG | + | chr1.2:79866719-79866738 | MS.gene060313:intron | 20.0% |
| !!! | TATATTCTGTCATTTTTTAG+GGG | + | chr1.2:79865976-79865995 | MS.gene060313:intron | 20.0% |
| !!! | TATATTTTTGAGTTTTGACA+CGG | + | chr1.2:79866806-79866825 | MS.gene060313:intron | 20.0% |
| !!! | TCAATTTAGAATCATTTATG+AGG | - | chr1.2:79865718-79865737 | None:intergenic | 20.0% |
| !!! | TGAGAAATTTTGATCAATTA+GGG | - | chr1.2:79868495-79868514 | None:intergenic | 20.0% |
| !!! | TTGAGAAATTTTGATCAATT+AGG | - | chr1.2:79868496-79868515 | None:intergenic | 20.0% |
| !!! | TTTTATTTTGGTAAAAACGA+GGG | - | chr1.2:79867256-79867275 | None:intergenic | 20.0% |
| !!! | TTTTTAGCTGTATATTGATA+AGG | + | chr1.2:79867108-79867127 | MS.gene060313:intron | 20.0% |
| ! | AAATGATTCTAAATTGAGCT+TGG | + | chr1.2:79865721-79865740 | MS.gene060313:intron | 25.0% |
| ! | AACTCAAAGTTATTTGTAGT+TGG | + | chr1.2:79867393-79867412 | MS.gene060313:CDS | 25.0% |
| ! | AAGAAACCAATTAAAGATGA+TGG | - | chr1.2:79869045-79869064 | None:intergenic | 25.0% |
| ! | AAGATGCAGTTATTAAAATG+GGG | + | chr1.2:79869472-79869491 | MS.gene060313:intron | 25.0% |
| ! | ACATTATCAAACATGATCAA+AGG | - | chr1.2:79869208-79869227 | None:intergenic | 25.0% |
| ! | ACGATATAGAATAAACAAAC+TGG | - | chr1.2:79869368-79869387 | None:intergenic | 25.0% |
| ! | ACTCAAAGTTATTTGTAGTT+GGG | + | chr1.2:79867394-79867413 | MS.gene060313:CDS | 25.0% |
| ! | ATATGATCCAAGTATGAAAT+TGG | - | chr1.2:79867591-79867610 | None:intergenic | 25.0% |
| ! | ATATGTAACTCTTGTATCTA+CGG | + | chr1.2:79868519-79868538 | MS.gene060313:intron | 25.0% |
| ! | ATCAACATATGCAAAAGAAA+AGG | - | chr1.2:79867816-79867835 | None:intergenic | 25.0% |
| ! | ATCCTTACAAATATGTCTTT+AGG | + | chr1.2:79869567-79869586 | MS.gene060313:intron | 25.0% |
| ! | ATCTTTATCAGAGAAGAATA+AGG | + | chr1.2:79866236-79866255 | MS.gene060313:CDS | 25.0% |
| ! | ATGTTATAGAACTCATTGAA+TGG | + | chr1.2:79866281-79866300 | MS.gene060313:intron | 25.0% |
| ! | ATTAGAAAGAAGGGTAATAT+TGG | - | chr1.2:79865148-79865167 | None:intergenic | 25.0% |
| ! | CAAATAAGAAATGCTTCATT+CGG | + | chr1.2:79867038-79867057 | MS.gene060313:intron | 25.0% |
| ! | CAAGATGCAGTTATTAAAAT+GGG | + | chr1.2:79869471-79869490 | MS.gene060313:intron | 25.0% |
| ! | CAGTGTAAAACTAATTACTA+AGG | - | chr1.2:79869405-79869424 | None:intergenic | 25.0% |
| ! | GGGTTTAACAATAAATTCAA+TGG | - | chr1.2:79865779-79865798 | None:intergenic | 25.0% |
| ! | TAAATAAAGGTCAGATACTA+TGG | - | chr1.2:79868416-79868435 | None:intergenic | 25.0% |
| ! | TCAAGATGCAGTTATTAAAA+TGG | + | chr1.2:79869470-79869489 | MS.gene060313:intron | 25.0% |
| ! | TGGATATATTCATGTAAACA+GGG | - | chr1.2:79865799-79865818 | None:intergenic | 25.0% |
| ! | TGTAAAACTAATTACTAAGG+TGG | - | chr1.2:79869402-79869421 | None:intergenic | 25.0% |
| ! | TTACTTTCAGATTGAAACAA+AGG | + | chr1.2:79865216-79865235 | MS.gene060313:intron | 25.0% |
| ! | TTATGGAAAGCTTAAAAATC+TGG | + | chr1.2:79870106-79870125 | MS.gene060313:CDS | 25.0% |
| ! | TTGGATATATTCATGTAAAC+AGG | - | chr1.2:79865800-79865819 | None:intergenic | 25.0% |
| ! | TTTCCTATAATGTCATTACT+AGG | + | chr1.2:79869611-79869630 | MS.gene060313:intron | 25.0% |
| !! | AAACATTTTTCTATCTCTCT+TGG | - | chr1.2:79868554-79868573 | None:intergenic | 25.0% |
| !! | GTTATTGATTAAAATGAGAG+AGG | - | chr1.2:79868803-79868822 | None:intergenic | 25.0% |
| !!! | AACAATTTTATTTAGGACAC+CGG | + | chr1.2:79868661-79868680 | MS.gene060313:intron | 25.0% |
| !!! | AACCTTTTTTTCTCTTCTTT+TGG | - | chr1.2:79866645-79866664 | None:intergenic | 25.0% |
| !!! | ACCTTTTTTTCTCTTCTTTT+GGG | - | chr1.2:79866644-79866663 | None:intergenic | 25.0% |
| !!! | AGAAATTTTGATCAATTAGG+GGG | - | chr1.2:79868493-79868512 | None:intergenic | 25.0% |
| !!! | ATATCTTGCTATTTCAATGT+GGG | + | chr1.2:79865571-79865590 | MS.gene060313:intron | 25.0% |
| !!! | CATACTCATCAGTTTTATTT+TGG | - | chr1.2:79867268-79867287 | None:intergenic | 25.0% |
| !!! | GAGAAATTTTGATCAATTAG+GGG | - | chr1.2:79868494-79868513 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTGGTAAAAACG+AGG | - | chr1.2:79867257-79867276 | None:intergenic | 25.0% |
| !!! | TGTTTCTAAAATGTAAGCTA+TGG | - | chr1.2:79867478-79867497 | None:intergenic | 25.0% |
| !!! | TTTATTTTGGTAAAAACGAG+GGG | - | chr1.2:79867255-79867274 | None:intergenic | 25.0% |
| !!! | TTTCTGTTTTTCTTGCTAAT+TGG | + | chr1.2:79865175-79865194 | MS.gene060313:intron | 25.0% |
| !!! | TTTTACTGTGTTATTTGCTT+TGG | + | chr1.2:79869950-79869969 | MS.gene060313:intron | 25.0% |
| AAAACAATAGAGAGAGAAAG+AGG | - | chr1.2:79866618-79866637 | None:intergenic | 30.0% | |
| AAACAATAGAGAGAGAAAGA+GGG | - | chr1.2:79866617-79866636 | None:intergenic | 30.0% | |
| AAACATCTTATCCATCTTAG+GGG | + | chr1.2:79867493-79867512 | MS.gene060313:intron | 30.0% | |
| AAATACACCAGAACAATCAT+TGG | + | chr1.2:79866137-79866156 | MS.gene060313:CDS | 30.0% | |
| AAGAGAAAAAGAAACTACAG+CGG | - | chr1.2:79869670-79869689 | None:intergenic | 30.0% | |
| AATACACCAGAACAATCATT+GGG | + | chr1.2:79866138-79866157 | MS.gene060313:CDS | 30.0% | |
| ACATAAGGAAATCAAGAGAT+TGG | - | chr1.2:79867907-79867926 | None:intergenic | 30.0% | |
| ACCTCATTTCTATTAGCAAA+TGG | - | chr1.2:79866755-79866774 | None:intergenic | 30.0% | |
| ACTTATGATGATCTCGAAAA+GGG | + | chr1.2:79867002-79867021 | MS.gene060313:intron | 30.0% | |
| ACTTGAAGAAACTGATGATA+GGG | - | chr1.2:79870352-79870371 | None:intergenic | 30.0% | |
| AGAAACATCTTATCCATCTT+AGG | + | chr1.2:79867491-79867510 | MS.gene060313:intron | 30.0% | |
| AGTAAGTAGTAACCATGAAT+AGG | - | chr1.2:79865357-79865376 | None:intergenic | 30.0% | |
| AGTACTTCTTATAAGATCAG+AGG | - | chr1.2:79866985-79867004 | None:intergenic | 30.0% | |
| ATAGAGTTTAAAAGACAGTC+TGG | - | chr1.2:79869889-79869908 | None:intergenic | 30.0% | |
| ATCAGTTTCTTCAAGTCAAT+GGG | + | chr1.2:79870356-79870375 | MS.gene060313:CDS | 30.0% | |
| ATCATACACAAAATGAAAGC+TGG | - | chr1.2:79869980-79869999 | None:intergenic | 30.0% | |
| ATGTGAAAAGGATGATTTAC+AGG | - | chr1.2:79867441-79867460 | None:intergenic | 30.0% | |
| ATTATTTGATCTTGAGCAGT+TGG | + | chr1.2:79867073-79867092 | MS.gene060313:intron | 30.0% | |
| CAAAACTCTGCAAATATTAC+TGG | - | chr1.2:79865904-79865923 | None:intergenic | 30.0% | |
| CAAAAGAAAAGGAGAAAAAC+AGG | - | chr1.2:79867805-79867824 | None:intergenic | 30.0% | |
| CAAAGAAGTAATGCTTCATT+CGG | + | chr1.2:79866943-79866962 | MS.gene060313:intron | 30.0% | |
| CAATGAGTTCTATAACATGA+AGG | - | chr1.2:79866279-79866298 | None:intergenic | 30.0% | |
| CATCATCAACCAGTAATTAA+TGG | - | chr1.2:79869803-79869822 | None:intergenic | 30.0% | |
| CATGTTCCATCATCTTTAAT+TGG | + | chr1.2:79869036-79869055 | MS.gene060313:intron | 30.0% | |
| CTCCTAAAGACATATTTGTA+AGG | - | chr1.2:79869572-79869591 | None:intergenic | 30.0% | |
| CTGATAAAGATTTATGTCCA+TGG | - | chr1.2:79866227-79866246 | None:intergenic | 30.0% | |
| CTTAAAAATCTGGTAGAGTA+TGG | + | chr1.2:79870116-79870135 | MS.gene060313:CDS | 30.0% | |
| GAAACATCTTATCCATCTTA+GGG | + | chr1.2:79867492-79867511 | MS.gene060313:intron | 30.0% | |
| GAATAAACAAACTGGTACTA+AGG | - | chr1.2:79869360-79869379 | None:intergenic | 30.0% | |
| GATCAAAGGTAAATTTGTGA+TGG | - | chr1.2:79869194-79869213 | None:intergenic | 30.0% | |
| GTACCTAGTAATGACATTAT+AGG | - | chr1.2:79869617-79869636 | None:intergenic | 30.0% | |
| GTGGTTTATCTTGAAAACTA+TGG | + | chr1.2:79870278-79870297 | MS.gene060313:CDS | 30.0% | |
| TAACTGCATCTTGAAATTGA+CGG | - | chr1.2:79869464-79869483 | None:intergenic | 30.0% | |
| TACTTATGATGATCTCGAAA+AGG | + | chr1.2:79867001-79867020 | MS.gene060313:intron | 30.0% | |
| TAGAACCAAACATACACTAA+AGG | - | chr1.2:79865623-79865642 | None:intergenic | 30.0% | |
| TAGCAATTGCCATTAATTAC+TGG | + | chr1.2:79869791-79869810 | MS.gene060313:intron | 30.0% | |
| TATGTATGTCTGTGTTTAGA+AGG | + | chr1.2:79867995-79868014 | MS.gene060313:intron | 30.0% | |
| TCAACAACTAAACTTTCATG+TGG | + | chr1.2:79866463-79866482 | MS.gene060313:intron | 30.0% | |
| TCCCAAAAGAAGAGAAAAAA+AGG | + | chr1.2:79866640-79866659 | MS.gene060313:intron | 30.0% | |
| TTCATCAGCTGAATTTCAAA+AGG | + | chr1.2:79867761-79867780 | MS.gene060313:CDS | 30.0% | |
| TTGATTAAAATGAGAGAGGA+AGG | - | chr1.2:79868799-79868818 | None:intergenic | 30.0% | |
| TTTCAGATTGAAACAAAGGA+TGG | + | chr1.2:79865220-79865239 | MS.gene060313:intron | 30.0% | |
| ! | AAGGTTTTTGAATCATGCTT+AGG | - | chr1.2:79868780-79868799 | None:intergenic | 30.0% |
| ! | ACTTTTCTATACATAGCCAA+GGG | + | chr1.2:79866380-79866399 | MS.gene060313:intron | 30.0% |
| ! | AGCTTTCATTTTGTGTATGA+TGG | + | chr1.2:79869979-79869998 | MS.gene060313:intron | 30.0% |
| ! | CAATAACTTAGGAATCCTTT+TGG | + | chr1.2:79868816-79868835 | MS.gene060313:intron | 30.0% |
| ! | CAGTAATATTTGCAGAGTTT+TGG | + | chr1.2:79865902-79865921 | MS.gene060313:intron | 30.0% |
| ! | CTAAAAGGACATTTGAAGTT+TGG | + | chr1.2:79869919-79869938 | MS.gene060313:intron | 30.0% |
| ! | TACAAATATGTCTTTAGGAG+AGG | + | chr1.2:79869572-79869591 | MS.gene060313:intron | 30.0% |
| ! | TACTTTTCTATACATAGCCA+AGG | + | chr1.2:79866379-79866398 | MS.gene060313:intron | 30.0% |
| ! | TCAACCTTTTCTACTATATC+CGG | - | chr1.2:79867549-79867568 | None:intergenic | 30.0% |
| ! | TTAACTCATTTTCAGCGATT+GGG | + | chr1.2:79867878-79867897 | MS.gene060313:intron | 30.0% |
| ! | TTATGCCATTTGATACAATC+AGG | + | chr1.2:79866095-79866114 | MS.gene060313:intron | 30.0% |
| ! | TTTTCCATTCTTAGTACCAA+AGG | - | chr1.2:79867621-79867640 | None:intergenic | 30.0% |
| !! | AACTTGTTGAAAACATTCAG+AGG | - | chr1.2:79866834-79866853 | None:intergenic | 30.0% |
| !! | AGCTATTTTGTGACAACTTT+TGG | - | chr1.2:79866671-79866690 | None:intergenic | 30.0% |
| !! | CAATTAAAGATGATGGAACA+TGG | - | chr1.2:79869038-79869057 | None:intergenic | 30.0% |
| !! | CTTGCTATTATTCTTGTCAA+TGG | + | chr1.2:79870020-79870039 | MS.gene060313:intron | 30.0% |
| !! | GAATTTGTTATTGACCTGTT+TGG | + | chr1.2:79865678-79865697 | MS.gene060313:intron | 30.0% |
| !! | GAGAAGAGTATTATTTGGAT+TGG | - | chr1.2:79868092-79868111 | None:intergenic | 30.0% |
| !! | GATATCTTGCTATTTCAATG+TGG | + | chr1.2:79865570-79865589 | MS.gene060313:intron | 30.0% |
| !! | GCTATTTTGTGACAACTTTT+GGG | - | chr1.2:79866670-79866689 | None:intergenic | 30.0% |
| !! | TTGATGATGAATCAGCATAT+GGG | + | chr1.2:79869814-79869833 | MS.gene060313:intron | 30.0% |
| !! | TTTTCAGCACTAGTTTGAAA+AGG | + | chr1.2:79866906-79866925 | MS.gene060313:intron | 30.0% |
| !!! | TGTATGTTTGGTTCTACTTT+TGG | + | chr1.2:79865627-79865646 | MS.gene060313:intron | 30.0% |
| AAACAGGACAGAATGAAAAC+TGG | - | chr1.2:79867789-79867808 | None:intergenic | 35.0% | |
| AACAATAGAGAGAGAAAGAG+GGG | - | chr1.2:79866616-79866635 | None:intergenic | 35.0% | |
| AAGCTTTCCATAATCGTACT+TGG | - | chr1.2:79870099-79870118 | None:intergenic | 35.0% | |
| AATACCACATATTCAGAGCA+AGG | - | chr1.2:79865102-79865121 | None:intergenic | 35.0% | |
| AATGCTGGTAGAATGTGAAA+AGG | - | chr1.2:79867453-79867472 | None:intergenic | 35.0% | |
| ACAAAGGATGGTTTCTTGTT+AGG | + | chr1.2:79865232-79865251 | MS.gene060313:CDS | 35.0% | |
| ACAGTCTGGTGGAAATAATT+AGG | - | chr1.2:79869875-79869894 | None:intergenic | 35.0% | |
| ACTTAGACGAGTATCACATA+AGG | - | chr1.2:79867922-79867941 | None:intergenic | 35.0% | |
| AGCTTCCTTTAGTGTATGTT+TGG | + | chr1.2:79865615-79865634 | MS.gene060313:intron | 35.0% | |
| ATACCACATATTCAGAGCAA+GGG | - | chr1.2:79865101-79865120 | None:intergenic | 35.0% | |
| ATCAACAAAGGCAATGATCT+GGG | - | chr1.2:79870179-79870198 | None:intergenic | 35.0% | |
| ATGTAAGCTATGGAAAATGC+TGG | - | chr1.2:79867468-79867487 | None:intergenic | 35.0% | |
| ATTGACCTGTTTGGATGTAT+TGG | + | chr1.2:79865687-79865706 | MS.gene060313:intron | 35.0% | |
| ATTGCCATACTCTTATCCTT+CGG | + | chr1.2:79864988-79865007 | MS.gene060313:CDS | 35.0% | |
| CAAAACCAATACATCCAAAC+AGG | - | chr1.2:79865695-79865714 | None:intergenic | 35.0% | |
| CATCAGTTTCTTCAAGTCAA+TGG | + | chr1.2:79870355-79870374 | MS.gene060313:CDS | 35.0% | |
| GAAAAATAGAGACCTCTCAT+TGG | - | chr1.2:79869432-79869451 | None:intergenic | 35.0% | |
| GAAATAATTGTCCCCTAAGA+TGG | - | chr1.2:79867507-79867526 | None:intergenic | 35.0% | |
| GACTTGAAGAAACTGATGAT+AGG | - | chr1.2:79870353-79870372 | None:intergenic | 35.0% | |
| GGGAAGTAATAATGTTCAGT+GGG | + | chr1.2:79869287-79869306 | MS.gene060313:intron | 35.0% | |
| GTTCAGATGATTGCTACAAT+GGG | + | chr1.2:79867736-79867755 | MS.gene060313:intron | 35.0% | |
| TAATATATGTGTAGCGGTGA+TGG | - | chr1.2:79868296-79868315 | None:intergenic | 35.0% | |
| TCAACCGGATATAGTAGAAA+AGG | + | chr1.2:79867542-79867561 | MS.gene060313:CDS | 35.0% | |
| TCAGTTTCTTCAAGTCAATG+GGG | + | chr1.2:79870357-79870376 | MS.gene060313:CDS | 35.0% | |
| TCTCAAAAGTTGTCCCAAAA+TGG | - | chr1.2:79866530-79866549 | None:intergenic | 35.0% | |
| TCTGTCTCCAATTTCATACT+TGG | + | chr1.2:79867581-79867600 | MS.gene060313:CDS | 35.0% | |
| TGACTAGAATTCTTCGACAA+TGG | - | chr1.2:79867163-79867182 | None:intergenic | 35.0% | |
| TGGCATTCATGAAAGACAAA+AGG | - | chr1.2:79868121-79868140 | None:intergenic | 35.0% | |
| TGTTCAGATGATTGCTACAA+TGG | + | chr1.2:79867735-79867754 | MS.gene060313:intron | 35.0% | |
| TTGAAATTGACGGAATGACA+TGG | - | chr1.2:79869454-79869473 | None:intergenic | 35.0% | |
| TTTGCTAAGCTGGAAATACA+TGG | - | chr1.2:79867839-79867858 | None:intergenic | 35.0% | |
| ! | AAATATGTCTTTAGGAGAGG+AGG | + | chr1.2:79869575-79869594 | MS.gene060313:intron | 35.0% |
| ! | CTTAACTCATTTTCAGCGAT+TGG | + | chr1.2:79867877-79867896 | MS.gene060313:intron | 35.0% |
| ! | GCCATTTGCTAATAGAAATG+AGG | + | chr1.2:79866751-79866770 | MS.gene060313:intron | 35.0% |
| ! | GCTGTAGTTTCTTTTTCTCT+TGG | + | chr1.2:79869669-79869688 | MS.gene060313:intron | 35.0% |
| ! | TACATAATTGATTCTCGAGG+TGG | + | chr1.2:79865654-79865673 | MS.gene060313:intron | 35.0% |
| ! | TCCAGCTTAGCAAATTTTCA+CGG | + | chr1.2:79867845-79867864 | MS.gene060313:intron | 35.0% |
| ! | TGACTTTTCTGACTATTCAC+TGG | + | chr1.2:79869083-79869102 | MS.gene060313:intron | 35.0% |
| ! | TGTCCTTTTGTAGCACTTTT+GGG | + | chr1.2:79867302-79867321 | MS.gene060313:intron | 35.0% |
| ! | TTGTCCTTTTGTAGCACTTT+TGG | + | chr1.2:79867301-79867320 | MS.gene060313:intron | 35.0% |
| !! | AATCCCAAAAGTGCTACAAA+AGG | - | chr1.2:79867308-79867327 | None:intergenic | 35.0% |
| !! | GAAAAGGTGGTTCAAGTTTT+TGG | - | chr1.2:79869004-79869023 | None:intergenic | 35.0% |
| !! | GGATCAAGGTTTTGATGTTT+GGG | + | chr1.2:79866173-79866192 | MS.gene060313:CDS | 35.0% |
| !! | GTTGATGATGAATCAGCATA+TGG | + | chr1.2:79869813-79869832 | MS.gene060313:intron | 35.0% |
| !! | GTTTTGGACAGTGTTTGAAT+TGG | + | chr1.2:79865918-79865937 | MS.gene060313:intron | 35.0% |
| !! | TTCAAGTTTTTGGAGGATGA+TGG | - | chr1.2:79868994-79869013 | None:intergenic | 35.0% |
| !! | TTTTCAAGATAAACCACCTC+AGG | - | chr1.2:79870275-79870294 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTCTACTTTTGG+AGG | + | chr1.2:79865630-79865649 | MS.gene060313:intron | 35.0% |
| !!! | TGTTTGGTTCTACTTTTGGA+GGG | + | chr1.2:79865631-79865650 | MS.gene060313:intron | 35.0% |
| !!! | TTTTGTAGCACTTTTGGGAT+TGG | + | chr1.2:79867307-79867326 | MS.gene060313:intron | 35.0% |
| ACCTGCCTGATTGTATCAAA+TGG | - | chr1.2:79866103-79866122 | None:intergenic | 40.0% | |
| ACCTTCTCCAAGTACGATTA+TGG | + | chr1.2:79870089-79870108 | MS.gene060313:CDS | 40.0% | |
| AGCCAGCAAAGTAATTGCAA+TGG | - | chr1.2:79868141-79868160 | None:intergenic | 40.0% | |
| ATACACGCAGAATGACCAAA+AGG | - | chr1.2:79868834-79868853 | None:intergenic | 40.0% | |
| ATGAAGCACATACACACACA+TGG | - | chr1.2:79865526-79865545 | None:intergenic | 40.0% | |
| ATGAAGCCCAATGATTGTTC+TGG | - | chr1.2:79866147-79866166 | None:intergenic | 40.0% | |
| ATGAGTTCATCACAGAGAGT+TGG | - | chr1.2:79865063-79865082 | None:intergenic | 40.0% | |
| ATGATGAATCAGCATATGGG+TGG | + | chr1.2:79869817-79869836 | MS.gene060313:intron | 40.0% | |
| ATGGAACATGGAACATACTC+TGG | - | chr1.2:79869026-79869045 | None:intergenic | 40.0% | |
| ATGGCTCGTATGAGTGTTAT+AGG | + | chr1.2:79868599-79868618 | MS.gene060313:intron | 40.0% | |
| ATTTGTAGTTGGGCATTCAC+AGG | + | chr1.2:79867404-79867423 | MS.gene060313:CDS | 40.0% | |
| CAGATCATTGCCTTTGTTGA+TGG | + | chr1.2:79870178-79870197 | MS.gene060313:CDS | 40.0% | |
| CATCAACAAAGGCAATGATC+TGG | - | chr1.2:79870180-79870199 | None:intergenic | 40.0% | |
| CGTATGAGTGTTATAGGTGT+CGG | + | chr1.2:79868605-79868624 | MS.gene060313:intron | 40.0% | |
| CTTAGGCAAGTTATGAAGCA+CGG | - | chr1.2:79868763-79868782 | None:intergenic | 40.0% | |
| CTTCGTACAAATATGCTCCT+TGG | - | chr1.2:79869758-79869777 | None:intergenic | 40.0% | |
| GAGTTTAAAAGACAGTCTGG+TGG | - | chr1.2:79869886-79869905 | None:intergenic | 40.0% | |
| GATTCCGAAGGATAAGAGTA+TGG | - | chr1.2:79864995-79865014 | None:intergenic | 40.0% | |
| GCTCAAAAACAACAACAACG+AGG | + | chr1.2:79865307-79865326 | MS.gene060313:CDS | 40.0% | |
| GGAAAAGATGCACATTGATC+AGG | + | chr1.2:79867635-79867654 | MS.gene060313:CDS | 40.0% | |
| GGATCATATTAGTGCACCTT+TGG | + | chr1.2:79867602-79867621 | MS.gene060313:CDS | 40.0% | |
| GGGGAAGTAATAATGTTCAG+TGG | + | chr1.2:79869286-79869305 | MS.gene060313:intron | 40.0% | |
| TACTATATCCGGTTGAGTGA+AGG | - | chr1.2:79867538-79867557 | None:intergenic | 40.0% | |
| TAGTAACCATGAATAGGCCA+TGG | - | chr1.2:79865351-79865370 | None:intergenic | 40.0% | |
| TCCATAATCGTACTTGGAGA+AGG | - | chr1.2:79870093-79870112 | None:intergenic | 40.0% | |
| TGACATGCTTTATCTTGCCA+AGG | + | chr1.2:79869738-79869757 | MS.gene060313:intron | 40.0% | |
| TGAGAGACATGAACCTGTAA+TGG | - | chr1.2:79867964-79867983 | None:intergenic | 40.0% | |
| TGCACCTTTGGTACTAAGAA+TGG | + | chr1.2:79867614-79867633 | MS.gene060313:CDS | 40.0% | |
| TGCCATTGCAATTACTTTGC+TGG | + | chr1.2:79868136-79868155 | MS.gene060313:intron | 40.0% | |
| TTACACTGACATCCAATGAG+AGG | + | chr1.2:79869417-79869436 | MS.gene060313:intron | 40.0% | |
| TTTGTCTGAGTTGTCTGACA+TGG | + | chr1.2:79868580-79868599 | MS.gene060313:intron | 40.0% | |
| ! | ACAGAGAGTTGGTTGTTGTT+TGG | - | chr1.2:79865052-79865071 | None:intergenic | 40.0% |
| ! | ACGTCTTCTATCAGAAGTGT+CGG | - | chr1.2:79865434-79865453 | None:intergenic | 40.0% |
| ! | ATACGATGTGACTTGTGCTT+TGG | + | chr1.2:79867229-79867248 | MS.gene060313:intron | 40.0% |
| ! | ATGCGGCTAAGGTCAAATTT+TGG | - | chr1.2:79870155-79870174 | None:intergenic | 40.0% |
| ! | CAGCTTAGCAAATTTTCACG+GGG | + | chr1.2:79867847-79867866 | MS.gene060313:intron | 40.0% |
| ! | CATGGAACATACTCTGGAAA+AGG | - | chr1.2:79869020-79869039 | None:intergenic | 40.0% |
| ! | CCAGCTTAGCAAATTTTCAC+GGG | + | chr1.2:79867846-79867865 | MS.gene060313:intron | 40.0% |
| ! | GGGTACATAATTGATTCTCG+AGG | + | chr1.2:79865651-79865670 | MS.gene060313:intron | 40.0% |
| ! | TTACCCTTGCTCTGAATATG+TGG | + | chr1.2:79865095-79865114 | MS.gene060313:CDS | 40.0% |
| !! | AAGGTGGTTCAAGTTTTTGG+AGG | - | chr1.2:79869001-79869020 | None:intergenic | 40.0% |
| !! | AGAGAGTTGGTTGTTGTTTG+GGG | - | chr1.2:79865050-79865069 | None:intergenic | 40.0% |
| !! | CAAGGTTTTGATGTTTGGGT+AGG | + | chr1.2:79866177-79866196 | MS.gene060313:CDS | 40.0% |
| !! | CAGAGAGTTGGTTGTTGTTT+GGG | - | chr1.2:79865051-79865070 | None:intergenic | 40.0% |
| !! | CGGATCAAGGTTTTGATGTT+TGG | + | chr1.2:79866172-79866191 | MS.gene060313:CDS | 40.0% |
| !! | TGCCTTTGTTGATGGCTTAT+GGG | + | chr1.2:79870186-79870205 | MS.gene060313:CDS | 40.0% |
| !! | TTGCCTTTGTTGATGGCTTA+TGG | + | chr1.2:79870185-79870204 | MS.gene060313:CDS | 40.0% |
| !!! | CTGTCATTTTTTAGGGGAAG+TGG | + | chr1.2:79865982-79866001 | MS.gene060313:intron | 40.0% |
| !!! | TTTTTGGAGGATGATGGATG+AGG | - | chr1.2:79868988-79869007 | None:intergenic | 40.0% |
| AAGATAAACCACCTCAGGTG+TGG | - | chr1.2:79870270-79870289 | None:intergenic | 45.0% | |
| AAGGCAATGATCTGGGTATG+CGG | - | chr1.2:79870172-79870191 | None:intergenic | 45.0% | |
| AATCAGCATATGGGTGGAAG+TGG | + | chr1.2:79869823-79869842 | MS.gene060313:intron | 45.0% | |
| ATCATTGGGCTTCATCCTTG+CGG | + | chr1.2:79866152-79866171 | MS.gene060313:CDS | 45.0% | |
| ATTAGCCCTGTACGATCTTG+CGG | + | chr1.2:79867341-79867360 | MS.gene060313:CDS | 45.0% | |
| CATCAAAACCTTGATCCGCA+AGG | - | chr1.2:79866170-79866189 | None:intergenic | 45.0% | |
| CATTTCCGCAAGATCGTACA+GGG | - | chr1.2:79867349-79867368 | None:intergenic | 45.0% | |
| CGCACAATTCAGATCAGAGA+GGG | - | chr1.2:79868238-79868257 | None:intergenic | 45.0% | |
| CTCGAAAAGGGAGAACAGAA+TGG | + | chr1.2:79867014-79867033 | MS.gene060313:intron | 45.0% | |
| CTTCTGATAGAAGACGTGTC+TGG | + | chr1.2:79865437-79865456 | MS.gene060313:intron | 45.0% | |
| GACATGCTGTCATCCATTAC+AGG | + | chr1.2:79867948-79867967 | MS.gene060313:CDS | 45.0% | |
| GCCATTTGATACAATCAGGC+AGG | + | chr1.2:79866099-79866118 | MS.gene060313:intron | 45.0% | |
| GGATCACTGGAGAACATATG+AGG | - | chr1.2:79870061-79870080 | None:intergenic | 45.0% | |
| TCATTTCCGCAAGATCGTAC+AGG | - | chr1.2:79867350-79867369 | None:intergenic | 45.0% | |
| TGATTTCCAGCACACACTCA+AGG | + | chr1.2:79870235-79870254 | MS.gene060313:CDS | 45.0% | |
| TTACTTCGACACTCCTAGAC+CGG | - | chr1.2:79868634-79868653 | None:intergenic | 45.0% | |
| ! | CGGCTAAGGTCAAATTTTGG+TGG | - | chr1.2:79870152-79870171 | None:intergenic | 45.0% |
| ! | GCAATTTTGTGGAACACCCT+TGG | - | chr1.2:79866399-79866418 | None:intergenic | 45.0% |
| ! | GGAACATACTCTGGAAAAGG+TGG | - | chr1.2:79869017-79869036 | None:intergenic | 45.0% |
| ! | TTTTGCTGCCTTCACTCAAC+CGG | + | chr1.2:79867527-79867546 | MS.gene060313:CDS | 45.0% |
| !! | ACTTGGAGAAGGTACCTTTG+CGG | - | chr1.2:79870082-79870101 | None:intergenic | 45.0% |
| !! | AGAGTTGGTTGTTGTTTGGG+GGG | - | chr1.2:79865048-79865067 | None:intergenic | 45.0% |
| !! | CCCGTGAAAATTTGCTAAGC+TGG | - | chr1.2:79867849-79867868 | None:intergenic | 45.0% |
| !! | CCTTTGTTGATGGCTTATGG+GGG | + | chr1.2:79870188-79870207 | MS.gene060313:CDS | 45.0% |
| !! | GAGAGTTGGTTGTTGTTTGG+GGG | - | chr1.2:79865049-79865068 | None:intergenic | 45.0% |
| !! | GCCTTTGTTGATGGCTTATG+GGG | + | chr1.2:79870187-79870206 | MS.gene060313:CDS | 45.0% |
| !! | GCGCTGTTTTCAATTAGCAG+TGG | + | chr1.2:79869105-79869124 | MS.gene060313:intron | 45.0% |
| !! | GTGTTATAGGTGTCGGATAC+CGG | + | chr1.2:79868612-79868631 | MS.gene060313:intron | 45.0% |
| !! | TATATTAATTTATTTATAGA+CGG | + | chr1.2:79868309-79868328 | MS.gene060313:intron | 5.0% |
| ACAACAACAACGAGGTCCTC+CGG | + | chr1.2:79865315-79865334 | MS.gene060313:CDS | 50.0% | |
| ACAATCAGGCAGGTGATGCA+TGG | + | chr1.2:79866109-79866128 | MS.gene060313:intron | 50.0% | |
| ACGTGTCGGACAACTAAGAC+CGG | - | chr1.2:79868683-79868702 | None:intergenic | 50.0% | |
| ACGTGTCGTACGAGTGTCAT+GGG | + | chr1.2:79868699-79868718 | MS.gene060313:intron | 50.0% | |
| ATCATCGCTCACTCCTTCGA+CGG | + | chr1.2:79865012-79865031 | MS.gene060313:CDS | 50.0% | |
| ATGATCTGGGTATGCGGCTA+AGG | - | chr1.2:79870166-79870185 | None:intergenic | 50.0% | |
| CCCCCATAAGCCATCAACAA+AGG | - | chr1.2:79870191-79870210 | None:intergenic | 50.0% | |
| GAAATGTGCGTGGAACACGT+TGG | + | chr1.2:79866199-79866218 | MS.gene060313:CDS | 50.0% | |
| GATGAACTCATTCTTCCCGC+TGG | + | chr1.2:79865072-79865091 | MS.gene060313:CDS | 50.0% | |
| GCGCACAATTCAGATCAGAG+AGG | - | chr1.2:79868239-79868258 | None:intergenic | 50.0% | |
| GCTTCTCCATGGCCTATTCA+TGG | + | chr1.2:79865342-79865361 | MS.gene060313:CDS | 50.0% | |
| GTTTGGGTAGGAAATGTGCG+TGG | + | chr1.2:79866189-79866208 | MS.gene060313:CDS | 50.0% | |
| TAAACCACCTCAGGTGTGGA+TGG | - | chr1.2:79870266-79870285 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACCTCT+AGG | - | chr1.2:79868752-79868771 | None:intergenic | 50.0% | |
| TCAGATCAGAGAGGGTGAGT+AGG | - | chr1.2:79868230-79868249 | None:intergenic | 50.0% | |
| TGTTCTCCAGTGATCCGCAA+AGG | + | chr1.2:79870065-79870084 | MS.gene060313:intron | 50.0% | |
| TTCAGAGCAAGGGTAACCAG+CGG | - | chr1.2:79865091-79865110 | None:intergenic | 50.0% | |
| ! | AAGGTACCTTTGCGGATCAC+TGG | - | chr1.2:79870074-79870093 | None:intergenic | 50.0% |
| !!! | AGCACTTTTGGGATTGGAGC+TGG | + | chr1.2:79867313-79867332 | MS.gene060313:intron | 50.0% |
| ACTTTGTAGGGACGGGGGTT+GGG | + | chr1.2:79869265-79869284 | MS.gene060313:intron | 55.0% | |
| AGGCCATGGAGAAGCAGAAC+CGG | - | chr1.2:79865337-79865356 | None:intergenic | 55.0% | |
| CACGTGTCGTACGAGTGTCA+TGG | + | chr1.2:79868698-79868717 | MS.gene060313:intron | 55.0% | |
| GACACTCGTACGACACGTGT+CGG | - | chr1.2:79868697-79868716 | None:intergenic | 55.0% | |
| GCAGTTCCTTGAGTGTGTGC+TGG | - | chr1.2:79870244-79870263 | None:intergenic | 55.0% | |
| GGAGTGAGCGATGATTCCGA+AGG | - | chr1.2:79865007-79865026 | None:intergenic | 55.0% | |
| GGCTTCATCCTTGCGGATCA+AGG | + | chr1.2:79866159-79866178 | MS.gene060313:CDS | 55.0% | |
| TCAGAGCAAGGGTAACCAGC+GGG | - | chr1.2:79865090-79865109 | None:intergenic | 55.0% | |
| TTGCTTCAACGAGTCACGCG+TGG | + | chr1.2:79868942-79868961 | MS.gene060313:CDS | 55.0% | |
| ! | TACGAGTGTCATGGGAGTGC+CGG | + | chr1.2:79868707-79868726 | MS.gene060313:intron | 55.0% |
| !! | CTCTAGGACTAGACGTGTCG+CGG | - | chr1.2:79868736-79868755 | None:intergenic | 55.0% |
| !! | TAGGTGTCGGATACCGGTCT+AGG | + | chr1.2:79868618-79868637 | MS.gene060313:intron | 55.0% |
| ACTAGACGTGTCGCGGTGTC+CGG | - | chr1.2:79868729-79868748 | None:intergenic | 60.0% | |
| ACTGCCATCCACACCTGAGG+TGG | + | chr1.2:79870259-79870278 | MS.gene060313:CDS | 60.0% | |
| ATCGCTCACTCCTTCGACGG+CGG | + | chr1.2:79865015-79865034 | MS.gene060313:CDS | 60.0% | |
| CCATGGAGAAGCAGAACCGG+AGG | - | chr1.2:79865334-79865353 | None:intergenic | 60.0% | |
| CCTCCGGTTCTGCTTCTCCA+TGG | + | chr1.2:79865331-79865350 | MS.gene060313:CDS | 60.0% | |
| CGCGACACGTCTAGTCCTAG+AGG | + | chr1.2:79868734-79868753 | MS.gene060313:intron | 60.0% | |
| CGTGGAACACGTTGGAGCCA+TGG | + | chr1.2:79866207-79866226 | MS.gene060313:CDS | 60.0% | |
| CTTTGTAGGGACGGGGGTTG+GGG | + | chr1.2:79869266-79869285 | MS.gene060313:intron | 60.0% | |
| GACTTTGTAGGGACGGGGGT+TGG | + | chr1.2:79869264-79869283 | MS.gene060313:intron | 60.0% | |
| GGAACTGCCATCCACACCTG+AGG | + | chr1.2:79870256-79870275 | MS.gene060313:CDS | 60.0% | |
| TTTGTAGGGACGGGGGTTGG+GGG | + | chr1.2:79869267-79869286 | MS.gene060313:intron | 60.0% | |
| ! | GGGTGCGCTGCCGCCGTCGA+AGG | - | chr1.2:79865028-79865047 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 79864964 | 79870397 | 79864964 | ID=MS.gene060313 |
| chr1.2 | mRNA | 79864964 | 79870397 | 79864964 | ID=MS.gene060313.t1;Parent=MS.gene060313 |
| chr1.2 | exon | 79864964 | 79865116 | 79864964 | ID=MS.gene060313.t1.exon1;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79864964 | 79865116 | 79864964 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79865226 | 79865363 | 79865226 | ID=MS.gene060313.t1.exon2;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79865226 | 79865363 | 79865226 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79866117 | 79866257 | 79866117 | ID=MS.gene060313.t1.exon3;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79866117 | 79866257 | 79866117 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79867315 | 79867425 | 79867315 | ID=MS.gene060313.t1.exon4;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79867315 | 79867425 | 79867315 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79867513 | 79867656 | 79867513 | ID=MS.gene060313.t1.exon5;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79867513 | 79867656 | 79867513 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79867742 | 79867782 | 79867742 | ID=MS.gene060313.t1.exon6;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79867742 | 79867782 | 79867742 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79867893 | 79867969 | 79867893 | ID=MS.gene060313.t1.exon7;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79867893 | 79867969 | 79867893 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79868932 | 79869027 | 79868932 | ID=MS.gene060313.t1.exon8;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79868932 | 79869027 | 79868932 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| chr1.2 | exon | 79870075 | 79870397 | 79870075 | ID=MS.gene060313.t1.exon9;Parent=MS.gene060313.t1 |
| chr1.2 | CDS | 79870075 | 79870397 | 79870075 | ID=cds.MS.gene060313.t1;Parent=MS.gene060313.t1 |
| Gene Sequence |
| Protein sequence |
