AlfalfaGEDB | MS.gene040721

M. sativa cultivar XinJiangDaYe / MS.gene040721

KEGG: K17262
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01302.28 PF14560.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040721.t1	XP_024631914.1	83.7	245	28	2	1	234	1	244	5.90E-109	403.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040721.t1	Q67Z52	59.6	245	86	2	1	234	1	243	1.4e-77	290.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040721.t1	A0A072VI47	84.4	243	29	2	1	234	1	243	9.5e-109	402.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene028078	MS.gene040721	PPI
MS.gene028080	MS.gene040721	PPI
MS.gene040721	MS.gene045185	PPI
MS.gene070084	MS.gene040721	PPI
MS.gene72831	MS.gene040721	PPI
MS.gene84986	MS.gene040721	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040721.t1	MTR_1g051215	84.362	243	29	2	1	234	1	243	1.70e-145	406
MS.gene040721.t1	MTR_0004s0600	84.362	243	29	2	1	234	1	243	5.76e-144	402
MS.gene040721.t1	MTR_0004s0600	81.951	205	28	2	1	196	1	205	8.04e-114	324
MS.gene040721.t1	MTR_1g051215	76.250	160	29	2	1	151	1	160	1.77e-77	231
MS.gene040721.t1	MTR_0004s0600	77.019	161	28	2	1	152	1	161	2.24e-76	228
MS.gene040721.t1	MTR_0004s0600	76.875	160	28	2	1	151	1	160	2.77e-76	228

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040721.t1	AT3G10220	59.200	250	79	2	1	234	1	243	4.83e-101	293

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Find 64 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAACTAACCCATCAAA+GGG	0.532839	1.2:+34630035	None:intergenic
AACCACTGGGTCCTGGTTTC+TGG	-0.038978	1.2:-34627104	MS.gene040721:CDS
AACTAGGCCGGAGAAAGTGA+AGG	0.625495	1.2:-34626835	MS.gene040721:intron
AAGCAGTCAAGGACAAGCTA+TGG	0.547974	1.2:-34630166	MS.gene040721:CDS
ACCACTGGGTCCTGGTTTCT+GGG	0.303718	1.2:-34627103	MS.gene040721:CDS
ACCCAGAAACCAGGACCCAG+TGG	0.679557	1.2:+34627102	None:intergenic
ACCTTTGCCTCAATAGTCGA+TGG	0.516172	1.2:+34629674	None:intergenic
AGAATAGAATCCAAGGAGTT+TGG	0.355776	1.2:+34630058	None:intergenic
AGACACTTTCAGAAAATATA+GGG	0.357903	1.2:-34629717	MS.gene040721:CDS
AGACATCTGTGCTAATATCA+AGG	0.558662	1.2:-34629144	MS.gene040721:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACATTCAGATTCGTAC+AGG	+	chr1.2:34628985-34629004	None:intergenic	30.0%
AAACAAGAAAGATTTAGAGG+GGG	-	chr1.2:34628912-34628931	MS.gene040721:intron	30.0%
AAAGGAAAAATACGATGACA+AGG	-	chr1.2:34629808-34629827	MS.gene040721:intron	30.0%
AAAGTAACTAACCCATCAAA+GGG	+	chr1.2:34626513-34626532	None:intergenic	30.0%
ACTAATTGGATTTGTAGTGT+TGG	-	chr1.2:34627017-34627036	MS.gene040721:intron	30.0%
ACTACTTGTTCTTCATAGTT+AGG	+	chr1.2:34628289-34628308	None:intergenic	30.0%
ACTTATCCTAGTACAAAATC+AGG	-	chr1.2:34626907-34626926	MS.gene040721:intron	30.0%
AGAAAACTACACATGATTGA+AGG	+	chr1.2:34629182-34629201	None:intergenic	30.0%
AGAAATTTGAATGAAGTCGT+GGG	-	chr1.2:34627588-34627607	MS.gene040721:intron	30.0%
ATTTAGTACAACAAAAGAGC+TGG	-	chr1.2:34628645-34628664	MS.gene040721:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	34626264	34630303	34626264	ID=MS.gene040721
chr1.2	mRNA	34626264	34630303	34626264	ID=MS.gene040721.t1;Parent=MS.gene040721
chr1.2	exon	34629955	34630303	34629955	ID=MS.gene040721.t1.exon1;Parent=MS.gene040721.t1
chr1.2	CDS	34629955	34630303	34629955	ID=cds.MS.gene040721.t1;Parent=MS.gene040721.t1
chr1.2	exon	34629676	34629737	34629676	ID=MS.gene040721.t1.exon2;Parent=MS.gene040721.t1
chr1.2	CDS	34629676	34629737	34629676	ID=cds.MS.gene040721.t1;Parent=MS.gene040721.t1
chr1.2	exon	34629145	34629186	34629145	ID=MS.gene040721.t1.exon3;Parent=MS.gene040721.t1
chr1.2	CDS	34629145	34629186	34629145	ID=cds.MS.gene040721.t1;Parent=MS.gene040721.t1
chr1.2	exon	34627060	34627193	34627060	ID=MS.gene040721.t1.exon4;Parent=MS.gene040721.t1
chr1.2	CDS	34627060	34627193	34627060	ID=cds.MS.gene040721.t1;Parent=MS.gene040721.t1
chr1.2	exon	34626836	34626905	34626836	ID=MS.gene040721.t1.exon5;Parent=MS.gene040721.t1
chr1.2	CDS	34626836	34626905	34626836	ID=cds.MS.gene040721.t1;Parent=MS.gene040721.t1
chr1.2	exon	34626264	34626311	34626264	ID=MS.gene040721.t1.exon6;Parent=MS.gene040721.t1
chr1.2	CDS	34626264	34626311	34626264	ID=cds.MS.gene040721.t1;Parent=MS.gene040721.t1

Gene Sequence

>MS.gene040721

ATGGCATCGAGCTTACAGAAAATCGAAGGGGACGAGTCCGTACTATTGCGCGTTACTCATTCTAATCTCAAATCTTTCAACCCCGACATTCGCTTCTCCCTACAGCTCACAGTGGAAGCAGTCAAGGACAAGCTATGGAAAAAATGTGGTACTTCTGTTAACTCAATGCACCTCGAACTCTACGACGAACTTCGCAATAAAATCGCCGATCTCTCTGATCATTCCAAACTCCTTGGATTCTATTCTCCCTTTGATGGGTTAGTTACTTTCTCTTTTTCTTTCTATTTTTATTTTATTCTTCATCAATTGTTTAGTGTTTTTACTTTTTATTCCTTGTGGACTGTGGCAGGTTTCGTTTGCACGTCATTGATCTTGATCCAGCGTCTGTTACATCGGGTGGATGGTTGGAAGATACTTCTTTGGTGGAGAAATACGAAATTTCCGAAGAAGCCTATAATAAGCGAGGAGGCATGTCCCTCTATCACCTCATTCAACACAACTTTTTTTTATTTGTGAAAACTGGTTCTTGTAGCTTATTATATATTTTTTTCATTATGCTATAGCAGACACTTTCAGAAAATATAGGGAAAAATTGACTTCGCATGCTCCATCGACTATTGAGGCAAAGGTAAGCATTTCATTAACTTATCCTAGTACAAAATCAGGCTTTGTTTGGTAAAAATAGCGGATAGCCGATAAGCTAGTTTAACAGATGACTAGTAAACTAGCTTATAACTGATTGCGGATAATCTAACTAATTGGATTTGTAGTGTTGGTTATTTAGCGGTTGAAGTAGTTTATAAATATAAAATGATGTAAAAAAAGGTGTATTCAATTAAGATTGCAGGAGTAAAATTGAGATAAAAGGTGATAAGCTATAAGCTACTTGAATTAGCTTATCAAAAAACGCTCTAAGCTCGTGTGGAAATGACAGTTGCCTGGCGGTTTTCTTTAGTCATGCGAGTTTATAAGCTATAAGCTTTAAGCCATAAGCTCAAATATGTATCTTACCAAACAAACGCTTATTGGGCTCAAAATATGTCTATTACTTGACATGGGCTCATGTCCTTGCTTTTGGGTAATGGACACTTTCACTGATTTGGCGTTTCTTGTGCAGACACCAGACACCGACATGGAAGACATCTGTGCTAATATCAAGGTTTGTTAGTTATCATTTTTATGTTTTATTTTCTACTACGAGCATAATTGTTGTATAGGTTATTTTAGTATAGTTTTCAAAGTTATAAGGTTTAGGTTGATAAGGAGGAAAATTGAATAAAGATACAATGCAAAATGCGAGGTTAGATTGATAGGAAATTTGGATAGAAATTTGAATGAAGTCGTGGGCCAGCTGAGTCCAGATGAAGGTAATAGGCCTAATTTGTGGAGAGTGCACCACATGAAGATATTTAAGAAGAAGGATGCTGAGCTGGCATAGCAGGTGGAGAAGCTAGTGGAAGTTAGTTATACAGGGATGTGGACTGAGGAGAGGGGAGAATGATGAATTCTGTCATAGTGAGGTAAGGAACTTCAGAGAATATTTTCTCTGCGGTGGGAAGCCGTTGGGTTAGGTTCGGCAGACTCATTGCTATCAGATTTTCTTTTCAATAATTCACTGTAGCTTGTAACATGTATGCAAGTTACTGTTATCCATCCTTTTCTCTCTCTTGAAATTACAAGGATTTGGTGGATAAGGATGAAAACTGAATAAAGATACAATGAGCAATACGAGGTTAGATTGATAAGAGATTTGATGATAAGTAAGTATAAAACACAAACTTATAATTCTTACTTTAATTTATAAAATTCTAATATGGTCATGTATCAATGTAGTAAAACCAGTACAAGCCTACCCCAATAAGACTGCTAACATAATAGAAATCTTACATTCTAATGCTCTTCCTACATCTACAAGTTAGCTTACAAATGTCAAGGACCAATATTCTTAGAGTTACTTTATATTATATGTATATCTAATGCATGCCCTTATGCAAGTCTAGTTTACCTTCTGCTCAAATCAAACCTAACTATGAAGAACAAGTAGTGGCACGGATAAAATTCCTGAACATTTCTTCACAGAACATGTCAAGGACCAAGTATTACAAAAGCGTAAAGTATTTATTAGGTGGAATCTCAGAACTGCTTTATATATCTAACAACAAATAAACTTCAAAAAGCCTTCATATAATATGGGATTTAAAAACCATAGCAGGAAAGAGTAACCATGAATTAGATGCAATAAGCAAGCTGAGCACTGTAGGGAAGATAGCTTGGCGAGACAGCTGGAATAAAGCACAAGATTCGACAACCTGATTGTCCTTGAAATCATCAAACTGATAATTTGTTTAACTTTTGCTTGATGAATTTGGTGAAAACTTGTGATTTAGTACAACAAAAGAGCTGGTTTTGATGAAATATAATTAAGGATTTTCAGACAACAGAATAAATGATAATATTTAATAAAATAAAAAACTGCTTACAGTACATTACTGTAGCATCATTTATTTTCCACGATGACTTTTTCATTTATGCTATTCCCTTGAAGAATGAATGAAACGAGTATTTGGTTAGTTTGGTTTCTATTGAAACTGCTTTTATTTTAAATAGAGACCAAGGAAGAGAAGGACTGAGGACGTCCATTCTTGAAAAAACAAGAAAGATTTAGAGGGGGATTAACTTGAATGTGTAGTTTGGATGGGATTAACATACACCAGATAGCCTGTACGAATCTGAATGTTTTTAGCGGTTTGAATATAATGTTTGCTAGTATCAATTTGTATCAACTATAAATTGCTAGTCATATAACAAATAGGTTTGACTAAAGATATGGTTTTGTTTTCTAGCAGTATACTGTAGCCTCAGTTACTTGAATATTTATTTTTAGATGCATCGTGAATTGGACTTATTTTTTGGATCCTTCAATCATGTGTAGTTTTCTTTGGTTCTTTTAGTTATGGTTCATATGTTTTTGCAGTTTTGCTTTGCTGTAAAAGGGATATATAGCATATTTTGTTTTTCCTGTTATTGTAATGTCGATCAATTCGTCTGGTGTTTCTGAATTGAATCTCTTTGAATTTCTTTGTTGTTACTCCAATTTCCAAAATATTAAGGTAGGATCCAGATGTGAAGTTGAACCTGGGGCAAAAAGAGGTGTTGTAAAATTTGTTGGTCAGGCAGAACCACTGGGTCCTGGTTTCTGGGTTGGAGTTCAATATGATGAACCCTTGGGCAAACATGATGGCATGTAAGTAAAATTACCATCTTTTTTATGCAAGTCAATCAACTCACGACCAACTCACCATGCTAATTCCTGCTTTTAGCTATTGTGTGCTGTTTTGCATTCAAAAACAGCAATTATGCCTACATTTATCTCAGAATTTCCCTTGGTTATGTTGCAGGGTTAAAGGAGTACGTTACTTCCAATGCCCTCCATCTCACGGGGGAATAACTAGGCCGGAGAAAGTGAAGGTTTGTTGGAAATCATGTAGTAGTCCTTTAGTATCAGAATATTTTTCATTCATGGTTTTTTTGCCTGATAAAAATAAAAGGAAAAATACGATGACAAGGAATCCTGCTTAACATAAGACTAAAACACAAAATGACCAAGAGCAAAAATAACTTCATACATCCAAAAGCCTACTCTTATCCCAAATCTAGTATTGTGCTGTACTTCTTTTTTCTTGCTATCTGCGCACACACTAAGGCTCTGTTCGGGAGCTTGGAGAAAAGGGCTTTGGGGAGAGGGAACAGAAGAGAAGTCTTCCACCTTATTTTATAGTGACTATTTAGAGAACAATAAAAGAATACGTATGATTAATTTTAAGAGTATTATAACATTAAGATGATTTGAAGAATTTTTCTAAACTTGTAAATGGAAAAATTCTGACTGTCACACCAGATGGTGGCAAAAAGTATATTTGATTTCATATATCTAATAATATTTGTCTAAAAAACACTGATTTTTTTTATTTTTTTTTATAAATTCTTTCCAGGTTGGTGACTTCCCTGAACGAGATCCCTTTGAAGAGGATGAAATTTGA

Protein sequence

>MS.gene040721.t1

MASSLQKIEGDESVLLRVTHSNLKSFNPDIRFSLQLTVEAVKDKLWKKCGTSVNSMHLELYDELRNKIADLSDHSKLLGFYSPFDGLVTFSFSFYFYFILHQLFSVFTFYSLWTVADTFRKYREKLTSHAPSTIEAKTPDTDMEDICANIKVGSRCEVEPGAKRGVVKFVGQAEPLGPGFWVGVQYDEPLGKHDGMVKGVRYFQCPPSHGGITRPEKVKVGDFPERDPFEEDEI