Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040755.t1 | XP_013467444.1 | 95.8 | 542 | 23 | 0 | 8 | 549 | 1 | 542 | 3.10E-294 | 1020.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040755.t1 | P45951 | 61.7 | 460 | 164 | 3 | 93 | 549 | 86 | 536 | 1.1e-159 | 564.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040755.t1 | A0A072VIQ1 | 95.8 | 542 | 23 | 0 | 8 | 549 | 1 | 542 | 2.3e-294 | 1020.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005383 | MS.gene040755 | PPI |
| MS.gene04418 | MS.gene040755 | PPI |
| MS.gene05640 | MS.gene040755 | PPI |
| MS.gene20956 | MS.gene040755 | PPI |
| MS.gene04079 | MS.gene040755 | PPI |
| MS.gene040755 | MS.gene58439 | PPI |
| MS.gene08109 | MS.gene040755 | PPI |
| MS.gene033130 | MS.gene040755 | PPI |
| MS.gene21089 | MS.gene040755 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040755.t1 | MTR_1g051380 | 95.756 | 542 | 23 | 0 | 8 | 549 | 1 | 542 | 0.0 | 1044 |
| MS.gene040755.t1 | MTR_1g051380 | 96.450 | 507 | 18 | 0 | 43 | 549 | 1 | 507 | 0.0 | 1006 |
| MS.gene040755.t1 | MTR_3g075220 | 28.797 | 316 | 165 | 13 | 289 | 547 | 43 | 355 | 5.64e-24 | 103 |
| MS.gene040755.t1 | MTR_8g075810 | 28.125 | 288 | 150 | 12 | 289 | 528 | 1 | 279 | 1.06e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040755.t1 | AT2G41460 | 61.739 | 460 | 164 | 3 | 93 | 549 | 39 | 489 | 0.0 | 587 |
| MS.gene040755.t1 | AT2G41460 | 61.739 | 460 | 164 | 3 | 93 | 549 | 79 | 529 | 0.0 | 587 |
| MS.gene040755.t1 | AT2G41460 | 61.739 | 460 | 164 | 3 | 93 | 549 | 86 | 536 | 0.0 | 586 |
| MS.gene040755.t1 | AT2G41460 | 53.395 | 324 | 139 | 3 | 93 | 413 | 86 | 400 | 6.10e-112 | 339 |
| MS.gene040755.t1 | AT3G60950 | 67.368 | 95 | 25 | 2 | 368 | 456 | 502 | 596 | 1.10e-29 | 124 |
| MS.gene040755.t1 | AT3G48425 | 29.032 | 310 | 165 | 13 | 290 | 547 | 44 | 350 | 5.16e-24 | 104 |
| MS.gene040755.t1 | AT3G61030 | 39.850 | 133 | 61 | 5 | 303 | 429 | 389 | 508 | 2.83e-12 | 69.7 |
Find 112 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTAAGCTTGGTTATTC+TGG | 0.175376 | 1.2:+35872728 | MS.gene040755:CDS |
| GTTAAATCAGATGAGGTTTC+AGG | 0.209613 | 1.2:+35869458 | MS.gene040755:CDS |
| TTTCAATTCTCAGGAGTATA+AGG | 0.239708 | 1.2:+35868963 | MS.gene040755:intron |
| TTCAATGTCTTCCGGAGTTC+TGG | 0.247467 | 1.2:-35868849 | None:intergenic |
| TGTTGTTGTATATACTTATT+GGG | 0.261619 | 1.2:+35875055 | MS.gene040755:CDS |
| GTGTTGTTGTATATACTTAT+TGG | 0.273275 | 1.2:+35875054 | MS.gene040755:CDS |
| GACCTTAACAGTATGATTCT+TGG | 0.285369 | 1.2:-35868040 | None:intergenic |
| TATATACTTATTGGGGTTAT+CGG | 0.316344 | 1.2:+35875063 | MS.gene040755:CDS |
| GACCTCAAAAGATGATGAAA+TGG | 0.348075 | 1.2:-35867974 | None:intergenic |
| ACTGGATACGTGCCTAATTC+TGG | 0.349865 | 1.2:+35873386 | MS.gene040755:CDS |
| GGTGGTGGTCTCATAGTTCT+AGG | 0.354792 | 1.2:-35869803 | None:intergenic |
| GTCTGCCTTGAAGAATTTCA+TGG | 0.355163 | 1.2:+35869018 | MS.gene040755:CDS |
| CGACTTACTTCAATGTCTTC+CGG | 0.366924 | 1.2:-35868857 | None:intergenic |
| TACATTCTCCCTGATGTGAT+TGG | 0.367233 | 1.2:+35875606 | MS.gene040755:CDS |
| ATGGCTATGAGAACAGCTTT+TGG | 0.382451 | 1.2:+35872696 | MS.gene040755:CDS |
| AAGATCCTCTTTACGACCTT+TGG | 0.382891 | 1.2:-35868993 | None:intergenic |
| TTCAAGCCATCACCAGAATT+AGG | 0.386124 | 1.2:-35873398 | None:intergenic |
| GAGAGCGTTGCTAAAATTAG+AGG | 0.387103 | 1.2:+35869880 | MS.gene040755:CDS |
| AAGCCTCTTTCAGTTAGATA+TGG | 0.388961 | 1.2:+35873293 | MS.gene040755:CDS |
| TTCAAATAATTGATGAGAGC+TGG | 0.410917 | 1.2:-35873573 | None:intergenic |
| ATGAATGCTGAAAAGGTATC+AGG | 0.411178 | 1.2:+35869308 | MS.gene040755:CDS |
| TACATCGAAGTCTTCCCTTT+GGG | 0.412794 | 1.2:-35869924 | None:intergenic |
| TCTTAATCTTTCAATCTCAA+TGG | 0.416128 | 1.2:-35868793 | None:intergenic |
| GATAAAATGTATCAAACTCT+AGG | 0.417173 | 1.2:-35873358 | None:intergenic |
| GGTTTGCTTCTAAACCTTTG+AGG | 0.420980 | 1.2:-35868011 | None:intergenic |
| AGCTTCATAACGAGGCCAAT+TGG | 0.426579 | 1.2:-35875642 | None:intergenic |
| TGATCGCTCCCAATCACATC+AGG | 0.432864 | 1.2:-35875615 | None:intergenic |
| TGAGACCACCACCTCTTTCT+CGG | 0.433082 | 1.2:+35869813 | MS.gene040755:CDS |
| CAACCTCTTTCAATCTTACC+AGG | 0.435917 | 1.2:+35867694 | MS.gene040755:CDS |
| CTTGCAAGAGACTAAACTTC+AGG | 0.435926 | 1.2:+35869952 | MS.gene040755:CDS |
| TTCAATTCTCAGGAGTATAA+GGG | 0.436894 | 1.2:+35868964 | MS.gene040755:intron |
| GGGAGCGATCATTGTCCAAT+TGG | 0.438960 | 1.2:+35875627 | MS.gene040755:CDS |
| ACATGTAGTGTTTCTAAGCT+TGG | 0.442260 | 1.2:+35872719 | MS.gene040755:CDS |
| TTTAGAAATGAATGCTGAAA+AGG | 0.444120 | 1.2:+35869301 | MS.gene040755:CDS |
| ATACATCGAAGTCTTCCCTT+TGG | 0.444759 | 1.2:-35869925 | None:intergenic |
| TTCCAAGAATCATACTGTTA+AGG | 0.445894 | 1.2:+35868038 | MS.gene040755:CDS |
| ATTGTCCATGAAATTCTTCA+AGG | 0.446973 | 1.2:-35869023 | None:intergenic |
| ATCGTGAACTTTGTCAGCTA+TGG | 0.447234 | 1.2:-35875580 | None:intergenic |
| ATTGGGGTTATCGGCATGGC+GGG | 0.449448 | 1.2:+35875072 | MS.gene040755:CDS |
| ATAAAACAGCGACTGATAGA+TGG | 0.463114 | 1.2:+35872677 | MS.gene040755:CDS |
| TGCTCACAAGAAACCTCAAA+AGG | 0.467136 | 1.2:+35869763 | MS.gene040755:CDS |
| AGCACTTCAACTTGCCCAAA+GGG | 0.471108 | 1.2:+35869910 | MS.gene040755:CDS |
| TCTTGATTATTTCCTTGTCT+CGG | 0.481191 | 1.2:+35875554 | MS.gene040755:CDS |
| GGTTGTGATGAATTTGAAAA+GGG | 0.484462 | 1.2:-35867952 | None:intergenic |
| ACAAGAAACCTCAAAAGGAT+TGG | 0.484591 | 1.2:+35869768 | MS.gene040755:CDS |
| GGGTTGTGATGAATTTGAAA+AGG | 0.486009 | 1.2:-35867953 | None:intergenic |
| ACATTCTCCCTGATGTGATT+GGG | 0.486272 | 1.2:+35875607 | MS.gene040755:CDS |
| TGTCTAAGTGTGAAAGCAAT+GGG | 0.501365 | 1.2:+35867919 | MS.gene040755:CDS |
| AGTCTTACAGAGTGACAGAA+TGG | 0.502399 | 1.2:+35873547 | MS.gene040755:intron |
| CAGGGTAACAAAAGGAGTGC+CGG | 0.505049 | 1.2:+35874948 | MS.gene040755:intron |
| GAGACCACCACCTCTTTCTC+GGG | 0.508355 | 1.2:+35869814 | MS.gene040755:CDS |
| TCCTCTTTACGACCTTTGGC+AGG | 0.508456 | 1.2:-35868989 | None:intergenic |
| ATGTAGGAAAATGATGTTGA+TGG | 0.510524 | 1.2:+35868765 | MS.gene040755:intron |
| CCTCTCTTCATCTGTGAACC+CGG | 0.511217 | 1.2:-35874967 | None:intergenic |
| AAGAAGGATGTGAGCCTCAA+AGG | 0.514227 | 1.2:+35867997 | MS.gene040755:CDS |
| TGTTTCATGTCAGAAAGAAA+AGG | 0.518519 | 1.2:-35867651 | None:intergenic |
| ACCAGGATGCTGCTTTCTAA+AGG | 0.518961 | 1.2:-35875033 | None:intergenic |
| CTTTCAGTTAGATATGGCCT+AGG | 0.519573 | 1.2:+35873299 | MS.gene040755:CDS |
| ACCTCAAAAGATGATGAAAT+GGG | 0.521460 | 1.2:-35867973 | None:intergenic |
| CGACTGTTCAAACTGAAACA+TGG | 0.521592 | 1.2:+35869732 | MS.gene040755:CDS |
| ACAGTATGATTCTTGGAACC+AGG | 0.522628 | 1.2:-35868033 | None:intergenic |
| AGATCACCCGTCAAAACTAC+AGG | 0.527238 | 1.2:-35874449 | None:intergenic |
| ACCTTTAGAAAGCAGCATCC+TGG | 0.527381 | 1.2:+35875032 | MS.gene040755:CDS |
| TTCATGGACAATAATATAAG+TGG | 0.528120 | 1.2:+35869034 | MS.gene040755:CDS |
| GTCATGGTGTCTACTATAGC+CGG | 0.532292 | 1.2:-35868822 | None:intergenic |
| AGGGTAACAAAAGGAGTGCC+GGG | 0.535759 | 1.2:+35874949 | MS.gene040755:intron |
| GTCTTACAGAGTGACAGAAT+GGG | 0.536495 | 1.2:+35873548 | MS.gene040755:intron |
| TGTATTCACAGGGTAACAAA+AGG | 0.537598 | 1.2:+35874940 | MS.gene040755:intron |
| AGGCCATATCTAACTGAAAG+AGG | 0.541827 | 1.2:-35873296 | None:intergenic |
| ATAAAATGTATCAAACTCTA+GGG | 0.542306 | 1.2:-35873357 | None:intergenic |
| CTGGAACAGCAATAATCTCA+AGG | 0.542369 | 1.2:+35872747 | MS.gene040755:CDS |
| CAGCACTTCAACTTGCCCAA+AGG | 0.556398 | 1.2:+35869909 | MS.gene040755:CDS |
| CCGGAGTTCTGGAACAGTCA+TGG | 0.558431 | 1.2:-35868838 | None:intergenic |
| CAGTATGATTCTTGGAACCA+GGG | 0.563347 | 1.2:-35868032 | None:intergenic |
| AAACCTGGTAAGATTGAAAG+AGG | 0.564486 | 1.2:-35867697 | None:intergenic |
| AGAGCGTTGCTAAAATTAGA+GGG | 0.574809 | 1.2:+35869881 | MS.gene040755:CDS |
| AAGTTTGTATCCCGAGAAAG+AGG | 0.582399 | 1.2:-35869824 | None:intergenic |
| ACTTATTGGGGTTATCGGCA+TGG | 0.586656 | 1.2:+35875068 | MS.gene040755:CDS |
| TATATCTGATCATGATAGTG+AGG | 0.588535 | 1.2:+35873322 | MS.gene040755:CDS |
| TCCTGCCAAAGGTCGTAAAG+AGG | 0.591395 | 1.2:+35868988 | MS.gene040755:CDS |
| TACGTGCCTAATTCTGGTGA+TGG | 0.592096 | 1.2:+35873392 | MS.gene040755:CDS |
| TCATGGTGTCTACTATAGCC+GGG | 0.593619 | 1.2:-35868821 | None:intergenic |
| TATCATGATCAGATATACCT+AGG | 0.599479 | 1.2:-35873316 | None:intergenic |
| GTATCCCGAGAAAGAGGTGG+TGG | 0.601084 | 1.2:-35869818 | None:intergenic |
| TGGTGATGGCTTGAAAAGAC+TGG | 0.601332 | 1.2:+35873406 | MS.gene040755:CDS |
| AGTATAAGGGTTCCTGCCAA+AGG | 0.603614 | 1.2:+35868977 | MS.gene040755:CDS |
| GTTGTTGTATATACTTATTG+GGG | 0.605688 | 1.2:+35875056 | MS.gene040755:CDS |
| CCATGACTGTTCCAGAACTC+CGG | 0.606127 | 1.2:+35868838 | MS.gene040755:CDS |
| TTGTCTAAGTGTGAAAGCAA+TGG | 0.608644 | 1.2:+35867918 | MS.gene040755:CDS |
| AGAGACGGTTGAACTTAACC+AGG | 0.609303 | 1.2:+35869364 | MS.gene040755:CDS |
| GGTATCAGGTGAAGAGCCTG+TGG | 0.615370 | 1.2:+35869322 | MS.gene040755:CDS |
| GCTGATAGTTAAATCAGATG+AGG | 0.615656 | 1.2:+35869451 | MS.gene040755:CDS |
| TGGAACAGCAATAATCTCAA+GGG | 0.616962 | 1.2:+35872748 | MS.gene040755:CDS |
| CAGCTATGGATTCCGAGACA+AGG | 0.621221 | 1.2:-35875566 | None:intergenic |
| GTATCATCAACTTCACCCAC+AGG | 0.621362 | 1.2:-35869338 | None:intergenic |
| AACTTAACCAGGGTAAGAGA+AGG | 0.621481 | 1.2:+35869375 | MS.gene040755:CDS |
| TGAAAGATTAAGAAATGACC+CGG | 0.627093 | 1.2:+35868803 | MS.gene040755:CDS |
| CCGGGTTCACAGATGAAGAG+AGG | 0.642033 | 1.2:+35874967 | MS.gene040755:CDS |
| AGATTTAGAGCTTCATAACG+AGG | 0.642931 | 1.2:-35875650 | None:intergenic |
| ATATCTGATCATGATAGTGA+GGG | 0.652626 | 1.2:+35873323 | MS.gene040755:CDS |
| TATTGGGGTTATCGGCATGG+CGG | 0.655289 | 1.2:+35875071 | MS.gene040755:CDS |
| TAAGTATATACAACAACACC+AGG | 0.656810 | 1.2:-35875050 | None:intergenic |
| AGTTGATGATACTCTAGAGA+CGG | 0.665969 | 1.2:+35869349 | MS.gene040755:CDS |
| AAAGGTTTAGAAGCAAACCC+TGG | 0.666896 | 1.2:+35868015 | MS.gene040755:CDS |
| GATCGCTCCCAATCACATCA+GGG | 0.672310 | 1.2:-35875614 | None:intergenic |
| TTTGTATCCCGAGAAAGAGG+TGG | 0.675715 | 1.2:-35869821 | None:intergenic |
| TCTCAAATTAGAGACGAACA+AGG | 0.683995 | 1.2:+35869251 | MS.gene040755:CDS |
| GTATCAGGTGAAGAGCCTGT+GGG | 0.705212 | 1.2:+35869323 | MS.gene040755:CDS |
| CTAACAGGAGAAGGATATCG+AGG | 0.709614 | 1.2:+35872652 | MS.gene040755:intron |
| GGCGGGCGCAAGTATAACAG+AGG | 0.726417 | 1.2:+35875089 | MS.gene040755:CDS |
| GAGACGGTTGAACTTAACCA+GGG | 0.738208 | 1.2:+35869365 | MS.gene040755:CDS |
| GTCTAAGTGTGAAAGCAATG+GGG | 0.780591 | 1.2:+35867920 | MS.gene040755:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 35867645 | 35875668 | 35867645 | ID=MS.gene040755 |
| chr1.2 | mRNA | 35867645 | 35875668 | 35867645 | ID=MS.gene040755.t1;Parent=MS.gene040755 |
| chr1.2 | exon | 35867645 | 35867715 | 35867645 | ID=MS.gene040755.t1.exon1;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35867645 | 35867715 | 35867645 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35867882 | 35868059 | 35867882 | ID=MS.gene040755.t1.exon2;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35867882 | 35868059 | 35867882 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35868771 | 35868871 | 35868771 | ID=MS.gene040755.t1.exon3;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35868771 | 35868871 | 35868771 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35868976 | 35869055 | 35868976 | ID=MS.gene040755.t1.exon4;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35868976 | 35869055 | 35868976 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35869243 | 35869479 | 35869243 | ID=MS.gene040755.t1.exon5;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35869243 | 35869479 | 35869243 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35869651 | 35869973 | 35869651 | ID=MS.gene040755.t1.exon6;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35869651 | 35869973 | 35869651 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35872659 | 35872769 | 35872659 | ID=MS.gene040755.t1.exon7;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35872659 | 35872769 | 35872659 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35873290 | 35873427 | 35873290 | ID=MS.gene040755.t1.exon8;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35873290 | 35873427 | 35873290 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35873549 | 35873596 | 35873549 | ID=MS.gene040755.t1.exon9;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35873549 | 35873596 | 35873549 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35874431 | 35874511 | 35874431 | ID=MS.gene040755.t1.exon10;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35874431 | 35874511 | 35874431 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35874951 | 35875110 | 35874951 | ID=MS.gene040755.t1.exon11;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35874951 | 35875110 | 35874951 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| chr1.2 | exon | 35875547 | 35875668 | 35875547 | ID=MS.gene040755.t1.exon12;Parent=MS.gene040755.t1 |
| chr1.2 | CDS | 35875547 | 35875668 | 35875547 | ID=cds.MS.gene040755.t1;Parent=MS.gene040755.t1 |
| Gene Sequence |
| Protein sequence |