AlfalfaGEDB | MS.gene033130

M. sativa cultivar XinJiangDaYe / MS.gene033130

KEGG: K11290
GO: GO:0005575 GO:0005634 GO:0006325 GO:0006334 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0065003 GO:0065004 GO:0071824 GO:0071840 GO:0110165
PFAM: PF00956.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033130.t1	XP_003609066.2	99.5	222	1	0	1	222	1	222	1.00E-122	449.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033130.t1	Q8LC68	72.9	221	58	2	1	219	1	221	2.4e-88	326.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033130.t1	G7JQZ6	99.5	222	1	0	1	222	1	222	7.4e-123	449.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene033130	MS.gene21952	PPI
MS.gene033130	MS.gene22290	PPI
MS.gene033130	MS.gene024700	PPI
MS.gene033130	MS.gene58439	PPI
MS.gene033130	MS.gene040755	PPI
MS.gene033130	MS.gene031830	PPI
MS.gene033130	MS.gene93335	PPI
MS.gene033130	MS.gene003373	PPI
MS.gene035484	MS.gene033130	PPI
MS.gene052308	MS.gene033130	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033130.t1	MTR_4g108570	99.213	254	1	1	1	253	1	254	0.0	497
MS.gene033130.t1	MTR_4g108570	94.737	266	1	2	1	253	1	266	6.07e-177	487
MS.gene033130.t1	MTR_3g040400	78.281	221	45	1	1	218	1	221	4.05e-127	361
MS.gene033130.t1	MTR_4g115160	63.559	236	71	3	5	230	105	335	4.29e-100	296
MS.gene033130.t1	MTR_4g115160	61.004	259	83	4	5	253	105	355	2.62e-97	289
MS.gene033130.t1	MTR_4g115820	60.204	98	25	3	100	183	6	103	3.62e-30	110
MS.gene033130.t1	MTR_0240s0030	48.810	84	42	1	57	139	2	85	4.97e-25	95.1
MS.gene033130.t1	MTR_6g090475	39.496	119	59	2	100	206	38	155	3.50e-20	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene033130.t1	AT1G18800	72.851	221	57	3	1	218	1	221	1.54e-112	324
MS.gene033130.t1	AT1G74560	73.529	204	52	2	17	218	22	225	2.10e-108	313
MS.gene033130.t1	AT1G74560	73.333	195	50	2	17	209	22	216	1.23e-102	299

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Find 52 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCCTCCTGTTGATGTC+AGG	0.487205	8.2:+17398927	MS.gene033130:CDS
AATTAATCAAGGATGATTTA+TGG	0.308424	8.2:+17400404	MS.gene033130:CDS
ACACTGTTGAAATAAATGAG+TGG	0.676235	8.2:-17400433	None:intergenic
ACAGCATTCAACCAGAAATC+AGG	0.453818	8.2:-17397296	None:intergenic
ACAGGAGGAGCCTGATGAAG+AGG	0.571562	8.2:+17400572	MS.gene033130:intron
ACCAACCTGACATCAACAGG+AGG	0.699036	8.2:-17398932	None:intergenic
AGACGAGGACGACTCTGAAG+AGG	0.603159	8.2:+17401216	MS.gene033130:CDS
AGAGGCGAACCGAAGATGGT+TGG	0.579592	8.2:+17396932	None:intergenic
AGCAGAAGTATAATGAGATT+AGG	0.487313	8.2:+17397231	MS.gene033130:CDS
AGTTCAGCATCAACTTCTTC+GGG	0.365326	8.2:-17396989	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGTTATGCATTCAGCA+TGG	-	chr8.2:17400787-17400806	None:intergenic	30.0%
AAAACAAGCATCACTAATCA+AGG	-	chr8.2:17399172-17399191	None:intergenic	30.0%
AAACAAGCATCACTAATCAA+GGG	-	chr8.2:17399171-17399190	None:intergenic	30.0%
AAAGTTACCCCACAATTAAA+AGG	+	chr8.2:17398506-17398525	MS.gene033130:intron	30.0%
ACACTGTTGAAATAAATGAG+TGG	-	chr8.2:17400436-17400455	None:intergenic	30.0%
ACAGATTCATACAACATTAC+AGG	-	chr8.2:17398532-17398551	None:intergenic	30.0%
ACATAATCCTGATACATGTA+GGG	+	chr8.2:17398866-17398885	MS.gene033130:intron	30.0%
ACTAATATGCATCATGAACA+TGG	-	chr8.2:17399014-17399033	None:intergenic	30.0%
AGCTACAGTTAGAAACATAA+CGG	-	chr8.2:17400540-17400559	None:intergenic	30.0%
ATTAATGACAAACACAGCTT+TGG	+	chr8.2:17401153-17401172	MS.gene033130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	17396947	17401273	17396947	ID=MS.gene033130
chr8.2	mRNA	17396947	17401273	17396947	ID=MS.gene033130.t1;Parent=MS.gene033130
chr8.2	exon	17396947	17397060	17396947	ID=MS.gene033130.t1.exon1;Parent=MS.gene033130.t1
chr8.2	CDS	17396947	17397060	17396947	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17397194	17397316	17397194	ID=MS.gene033130.t1.exon2;Parent=MS.gene033130.t1
chr8.2	CDS	17397194	17397316	17397194	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17397436	17397486	17397436	ID=MS.gene033130.t1.exon3;Parent=MS.gene033130.t1
chr8.2	CDS	17397436	17397486	17397436	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17397866	17397937	17397866	ID=MS.gene033130.t1.exon4;Parent=MS.gene033130.t1
chr8.2	CDS	17397866	17397937	17397866	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17398110	17398223	17398110	ID=MS.gene033130.t1.exon5;Parent=MS.gene033130.t1
chr8.2	CDS	17398110	17398223	17398110	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17398887	17398948	17398887	ID=MS.gene033130.t1.exon6;Parent=MS.gene033130.t1
chr8.2	CDS	17398887	17398948	17398887	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17400175	17400235	17400175	ID=MS.gene033130.t1.exon7;Parent=MS.gene033130.t1
chr8.2	CDS	17400175	17400235	17400175	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17400397	17400453	17400397	ID=MS.gene033130.t1.exon8;Parent=MS.gene033130.t1
chr8.2	CDS	17400397	17400453	17400397	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17400576	17400620	17400576	ID=MS.gene033130.t1.exon9;Parent=MS.gene033130.t1
chr8.2	CDS	17400576	17400620	17400576	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1
chr8.2	exon	17401211	17401273	17401211	ID=MS.gene033130.t1.exon10;Parent=MS.gene033130.t1
chr8.2	CDS	17401211	17401273	17401211	ID=cds.MS.gene033130.t1;Parent=MS.gene033130.t1

Gene Sequence

>MS.gene033130

ATGGTTGGAGACAGAACCAAGAAGCAGAAACTCACCGAAAATCCCGAAGAAGTTGATGCTGAACTCATCCTCTCCATCGAGAAATTGCAAGAGATCCAAGATGACCTCGAAAAGGTACCGTTTTTTTATTATTCAATTGAAGCTTTTAACTTACACAATTATTTGATCCACCAAATTAGGTTAACCTAATTTGATTTGAATTGTGTTTTATTAATTATGTGGATGATGAATTTGAAATTCGTTACAGATTAATGATGAAGCGAGTGATAAGGTTCTCGAAATTGAGCAGAAGTATAATGAGATTAGGAAGCCGGTTTACGATAAGCGGAACGAGATTATCAAATCTATTCCTGATTTCTGGTTGAATGCTGTGAGTATTTTATATATGTTTTTTCTTAATTGAATTTATTTTGTGAATTTTGTTAGTGTAATAGTTAAAATTGTTTTTTTTTGTTTTTTGTTTTGCTTTATCTTTGTTATTGTTTGCAGTTTTTGAGCCATCCTACCCTCAGTGAACTACTGAATGAGGAAGATCAAAAAGTATGTCTTTTTTTCTTTCAGCAATTAAAATTTACATTTATGTTAAGTTTTCCATGTTGTTACGTTTGGTTTGTTTGTATGATTCTGGAAATTACTCGGCGTGTTCTGTGGAAGTATTTTTTAAGGTAGTAGTTTTGACCCAGCGTGGACAAAACGAAACAGAATGGTTTTGGTTTCACCATTTTCCATGGAATCAAAGTAATATCACTTTTATCGCGTTCTGTTTTACTTTTAATATATGCACTAAACATAAAACAAAACTCACTTATTATGTTCTTTCATGTTTTAACCTGCCTTCTGAACAATTGCTAGGTTTTGTTCCTTTGATTAACGGTTCTGTTGGGAAACTTTAATTGATTTCCAATTCTTTATTTGATAGATATTCAAGTATTTGAGTTCTCTTGAGGTTGAAGATAATAAGGATGTCAAATCTGGATACACAATCACCCTTGTAAGTTGCCCTTCTTCTCTTCCCCCTCTTCCGAAAATTTGAAAATCACTTCATTGCAATGAAAAATATGGTTTTTGTGAAATTGTGAACTTCTTATTCATTGAAGATTGAAGAATAACCAAATGTTGATTTTCTACTGACAAAAATTAACCAGTAATCATTTCATGTTCAGAATTTCAATCCCAATCCCTATTTTGAGGATTCAAAACTTTCAAAGACTTTTACCTTCCGTGAAGAAGGAACAACAGAGATCACTGCTACCCCCATAAAATGGAAAGAAGGCAAGGTAAGGGAATTAATTTCACATTTTCTCCCCTATCAGCATTTATAATTTTTATTTTGCATATTTATCTGACAGCCAATGTGAAACTTCTTCAAATCTACATGACATGGATCAGCTTAAACTTGCTAAAAGTAGAGGGAGAGAACAACAAACTCGAACTTGATGAGATGCATAGGGAAAATAGTGGTCTTAAAATAAGATATAAATCATAAGTTTCAAGTAGGGTAGATGTAATAAGATTTGAGTGTGTTCCGCAATAGTAAAGTATCACTCAAGTTTGCAGGAAAAGTTACCCCACAATTAAAAGGCCTGTAATGTTGTATGAATCTGTTCACTTGGGGGTTGCACAAGACAGGGTTGCACAAGACAATATGTAATTAGAAATATGATTAGAAATACAATCATTAGGCATTTGTGAAAAGACCTCTACAAGAACAAATGGGGAGGGTTGGTCTGATTAAATATATGATAGTTTAAGGGAAACTGTTGGCCAAATTGTGAGATTTACAGATTAATGGTCTATATTTACACCTTATATATTTTTTGTTGTTGAGTGATCCATATAGTGGACCCAAGCTCATGGTAAAAGACCTTCTTTTTTTTTTTTCGACAGAGGAAAAGACCTTGTTGTTGTATTTTACTAACACATAATCCTGATACATGTAGGGAATACCCAATGGCGACAATCATGAGAAGAAAGGGAACAAAAGGCCTCCTGTTGATGTCAGGTTGGTGTCTTCAGTTTATTTTTTTTTCTTCTATTTGTACAGAATATCTTAAACAAAGAAAGCCATGTTCATGATGCATATTAGTTTCCACTTGTTCTTGGCTGACCTTTATATGTCTATACAAAATGAACTTCTGGAATTTGCCCACTCTCCAGCTTTGTCCATGATAACAAACTCACGAGTTATAATCCTGCCGTCAATTAGGACATCAATAAAGGGCCCTTGATTAGTGATGCTTGTTTTGGTTGCTAAACCAAATTCCTCTTTTCCTTTTTTCTTCTTCTTTTCAGTAATGTTTATTCCAATATGACCAAGCGGAAGGTAAGGAAATATTGGGAGTGAAACGAAATTCATAACACAATACAATACAGAGGATGCCTAAATCTACTTTAAAAGGATTATGTTAATCCCACAGTTTGATGATTACGGATACCCTGTTCGTTCCAGACCTCAACAACCTGAACAACTTTCCCATTACTATCGTTGCTATGGAAATAGCAGCCGCTATTGCACTGATAGCGAAAGAATCATATTGTAGCGGTTTTCATAGCGTTTTGTTCAAATCCCGCTAGACAATAGCTCCGCTATTTAACAATACCAAAGTATTTTCATTTGCAAATAATTGACTGGTACGTAAAGCCTTTGAAGAATTATCTCCGTCAATTATTTGACGGATGGCCCCATATTTGACGGGTGGATTCAATGGAAACATCCAAGAGAAATTTGATCAATTGTATACTTGATTGGAGGTTTGGGATCAGGGGTATGGTGGATGTTTAAGAGTCTGGTACCAATTTTTTCCAATAGGTCCCTGCCAGTAAAACTTGTGTGCTTTGCAGCATACTTTCCCATATTGTCAAGAGCAGTCTCTATGAGATACATTTGAATCATTATACTGTGAAAAGTATTGACCTTTCAGGAGTCGATGGAAGAGTATCTTTATGCCTGGCTGGCTGTGCATTACTCTGCCAAAACCCTTTCATGTAAAAAAACATTTTTCTAACAACGTAGCTAGTTTAAGCAAGACAGAGAGTAAAGTAGGCAAAGCAAATATCATGATTTTCCTTAAAACCACCTTCATATTTGAGGACAGAAGCTTTTGCTTTTATTGTTCATTAAATGTTATTATTTGAGAAATATGTTGTCAAAGGCTTAAAGCTCCTTTTGGAAACGCTTCATTGAACAAATGGTTAAAATCCTTTGATTTCTTGTGCTAATGAATGCAGTTTCCTTAGTTGGTTTTGTGACTGTGAGCAGAAAGATGATATGGCTGACATTCACGACGAGGTATAATTTTTTTTCCTGTTCTTCTCAAGTAGTTTCTAGATATGTGCATCCCTGTCTTTGTTTTCCACGTGTCTCTACTTGACTAATTTGAGTTTCTTTATTTTGTACTTTTTTATTCTTCACATTAGTCCTTGTATAATATTCAATTCACTATATTGCAGCTTGCAGAATTAATCAAGGATGATTTATGGTCAAATCCACTCATTTATTTCAACAGTGTAAGTCAACTTTTAGTTTTTATATCTTCGTTTTGATGAATACCAAATGCATTATTTGTCATTTTACTGTCATTTTTTTTCTTCCGTTATGTTTCTAACTGTAGCTGATTGTAATATAACAGGAGGAGCCTGATGAAGAGGATGCCGATGATGAAGCTGATGATGAGGTAATGGAAGTTCCGTTTTTCTTGGAAAAAATAGAGGTGATTAACAAAAGTTTTTGGGTTATTGCTCATAATAATTGTTTGGAATCTGATTATCATTTGATCCATACTGAATTCATAATTTTCAATTAAAGAGTTTGATGCGGTGATACTGTGCATACTGGATCCATGCTGAATGCATAACTTTTTAGCATGTGCATGTGCTTCTAGCAGCGATTTCTGAAGGACCTGAACCGAACTTTAATTTTCATTCGCGATCTAGGATAGTATCATATAAATGTTAATATAAAGAATATGGAACTATAAGTTGGAATAATACTTGAAGATTTTAAGTGAAGACAATACCTAAAGCTTTAAGTTAGAATGATTTTCATGATCCGAAAACAATAAATAATGTGAACACTGAGCACATGTTAAGATGTTTGATAACCTCCAAAAAAACTTGGCAAGTTATCTCTAACTGATTGCTATTAATCCTAAACATTGTTAAAGGATCTAAGTTGTGCATATACATATAGAATAATTTCCATTTTAAATTAATGACAAACACAGCTTTGGAAATACTAGATACAAATAATATTTCTTGTTCGCAGGAAAAAGACGAGGACGACTCTGAAGAGGATGACGAAGAGGGTGATGATGAGGAAGGCAATTGA

Protein sequence

>MS.gene033130.t1

MVGDRTKKQKLTENPEEVDAELILSIEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNAFLSHPTLSELLNEEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGTTEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELIKDDLWSNPLIYFNSEEPDEEDADDEADDEEKDEDDSEEDDEEGDDEEGN