Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041144.t1 | XP_003611828.1 | 92 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 1.20E-137 | 499.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041144.t1 | O80477 | 45.5 | 264 | 133 | 6 | 4 | 262 | 5 | 262 | 8.4e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041144.t1 | G7K9E3 | 92.0 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 8.4e-138 | 499.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047689 | MS.gene041144 | PPI |
| MS.gene87350 | MS.gene041144 | PPI |
| MS.gene041144 | MS.gene011884 | PPI |
| MS.gene041144 | MS.gene44962 | PPI |
| MS.gene010412 | MS.gene041144 | PPI |
| MS.gene28543 | MS.gene041144 | PPI |
| MS.gene041144 | MS.gene041151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041144.t1 | MTR_5g018300 | 92.015 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
| MS.gene041144.t1 | MTR_5g018280 | 87.452 | 263 | 32 | 1 | 1 | 263 | 1 | 262 | 3.10e-173 | 478 |
| MS.gene041144.t1 | MTR_5g018320 | 87.109 | 256 | 33 | 0 | 8 | 263 | 5 | 260 | 9.22e-173 | 477 |
| MS.gene041144.t1 | MTR_8g007675 | 55.469 | 256 | 112 | 2 | 8 | 262 | 32 | 286 | 1.21e-98 | 290 |
| MS.gene041144.t1 | MTR_8g008500 | 54.231 | 260 | 114 | 4 | 7 | 262 | 26 | 284 | 4.37e-94 | 278 |
| MS.gene041144.t1 | MTR_8g008660 | 50.584 | 257 | 122 | 3 | 7 | 262 | 26 | 278 | 1.04e-89 | 267 |
| MS.gene041144.t1 | MTR_8g008505 | 50.584 | 257 | 124 | 3 | 7 | 262 | 27 | 281 | 2.89e-89 | 266 |
| MS.gene041144.t1 | MTR_3g464040 | 49.805 | 257 | 124 | 3 | 7 | 262 | 18 | 270 | 1.25e-87 | 261 |
| MS.gene041144.t1 | MTR_8g007670 | 46.718 | 259 | 135 | 3 | 6 | 262 | 5 | 262 | 2.68e-80 | 243 |
| MS.gene041144.t1 | MTR_8g079120 | 42.697 | 267 | 141 | 4 | 1 | 262 | 1 | 260 | 8.16e-75 | 229 |
| MS.gene041144.t1 | MTR_8g007670 | 40.927 | 259 | 106 | 3 | 6 | 262 | 5 | 218 | 2.49e-64 | 200 |
| MS.gene041144.t1 | MTR_5g018350 | 39.231 | 260 | 147 | 4 | 6 | 262 | 5 | 256 | 4.68e-61 | 193 |
| MS.gene041144.t1 | MTR_5g018365 | 39.382 | 259 | 148 | 3 | 6 | 262 | 10 | 261 | 1.19e-59 | 190 |
| MS.gene041144.t1 | MTR_7g015220 | 37.549 | 253 | 154 | 2 | 7 | 259 | 123 | 371 | 1.49e-52 | 175 |
| MS.gene041144.t1 | MTR_8g079120 | 43.931 | 173 | 87 | 3 | 1 | 168 | 43 | 210 | 6.29e-49 | 161 |
| MS.gene041144.t1 | MTR_3g005410 | 35.409 | 257 | 155 | 4 | 7 | 259 | 93 | 342 | 6.28e-47 | 159 |
| MS.gene041144.t1 | MTR_5g068100 | 35.249 | 261 | 163 | 2 | 3 | 262 | 25 | 280 | 1.09e-45 | 155 |
| MS.gene041144.t1 | MTR_3g093730 | 35.433 | 254 | 159 | 2 | 6 | 259 | 34 | 282 | 6.76e-43 | 147 |
| MS.gene041144.t1 | MTR_3g093730 | 31.102 | 254 | 125 | 4 | 6 | 259 | 34 | 237 | 4.46e-33 | 121 |
| MS.gene041144.t1 | MTR_5g008130 | 40.506 | 79 | 46 | 1 | 185 | 262 | 2 | 80 | 6.49e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041144.t1 | AT2G23610 | 45.076 | 264 | 134 | 5 | 4 | 262 | 5 | 262 | 6.92e-78 | 236 |
| MS.gene041144.t1 | AT2G23620 | 43.798 | 258 | 142 | 2 | 6 | 262 | 7 | 262 | 6.94e-75 | 229 |
| MS.gene041144.t1 | AT2G23560 | 44.944 | 267 | 134 | 6 | 1 | 262 | 1 | 259 | 6.20e-74 | 226 |
| MS.gene041144.t1 | AT3G50440 | 42.578 | 256 | 142 | 3 | 9 | 262 | 22 | 274 | 8.91e-72 | 221 |
| MS.gene041144.t1 | AT2G23600 | 41.985 | 262 | 141 | 5 | 6 | 262 | 7 | 262 | 3.65e-70 | 217 |
| MS.gene041144.t1 | AT2G23600 | 41.985 | 262 | 141 | 5 | 6 | 262 | 22 | 277 | 5.86e-70 | 217 |
| MS.gene041144.t1 | AT4G37150 | 42.424 | 264 | 134 | 6 | 7 | 262 | 2 | 255 | 4.80e-69 | 214 |
| MS.gene041144.t1 | AT2G23580 | 43.446 | 267 | 141 | 5 | 1 | 262 | 1 | 262 | 1.57e-68 | 213 |
| MS.gene041144.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 1 | 262 | 2.02e-66 | 207 |
| MS.gene041144.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 8 | 269 | 2.17e-66 | 207 |
| MS.gene041144.t1 | AT2G23590 | 39.147 | 258 | 147 | 2 | 5 | 262 | 24 | 271 | 7.69e-65 | 204 |
| MS.gene041144.t1 | AT2G23610 | 40.385 | 260 | 107 | 5 | 4 | 262 | 5 | 217 | 2.35e-62 | 195 |
| MS.gene041144.t1 | AT5G10300 | 38.113 | 265 | 149 | 5 | 4 | 262 | 2 | 257 | 1.13e-57 | 185 |
| MS.gene041144.t1 | AT2G23550 | 38.346 | 266 | 127 | 5 | 1 | 262 | 1 | 233 | 1.70e-50 | 166 |
| MS.gene041144.t1 | AT1G26360 | 35.798 | 257 | 160 | 2 | 3 | 259 | 185 | 436 | 2.52e-50 | 171 |
| MS.gene041144.t1 | AT3G29770 | 37.154 | 253 | 155 | 2 | 7 | 259 | 137 | 385 | 4.01e-50 | 169 |
| MS.gene041144.t1 | AT5G58310 | 34.221 | 263 | 161 | 4 | 6 | 261 | 3 | 260 | 1.05e-48 | 162 |
| MS.gene041144.t1 | AT1G69240 | 34.866 | 261 | 157 | 5 | 4 | 259 | 184 | 436 | 7.67e-46 | 159 |
| MS.gene041144.t1 | AT2G23600 | 44.643 | 168 | 84 | 4 | 6 | 168 | 22 | 185 | 2.31e-45 | 151 |
| MS.gene041144.t1 | AT1G33990 | 32.812 | 256 | 167 | 3 | 5 | 259 | 94 | 345 | 2.84e-45 | 155 |
| MS.gene041144.t1 | AT2G23580 | 46.199 | 171 | 84 | 4 | 1 | 166 | 1 | 168 | 5.24e-45 | 150 |
| MS.gene041144.t1 | AT4G09900 | 31.102 | 254 | 170 | 3 | 7 | 259 | 97 | 346 | 1.73e-44 | 153 |
| MS.gene041144.t1 | AT4G16690 | 34.766 | 256 | 145 | 4 | 8 | 255 | 12 | 253 | 9.67e-44 | 149 |
| MS.gene041144.t1 | AT2G23550 | 47.368 | 171 | 82 | 4 | 1 | 166 | 8 | 175 | 1.50e-42 | 144 |
| MS.gene041144.t1 | AT3G10870 | 34.783 | 253 | 162 | 3 | 8 | 259 | 20 | 270 | 6.15e-42 | 145 |
| MS.gene041144.t1 | AT5G10300 | 38.571 | 210 | 103 | 5 | 4 | 207 | 2 | 191 | 5.90e-41 | 140 |
| MS.gene041144.t1 | AT4G37140 | 51.429 | 105 | 51 | 0 | 7 | 111 | 2 | 106 | 1.01e-39 | 135 |
| MS.gene041144.t1 | AT2G23570 | 40.659 | 182 | 101 | 4 | 84 | 262 | 1 | 178 | 8.24e-34 | 121 |
| MS.gene041144.t1 | AT4G37140 | 49.451 | 91 | 46 | 0 | 7 | 97 | 2 | 92 | 7.01e-32 | 113 |
| MS.gene041144.t1 | AT3G29770 | 41.667 | 72 | 42 | 0 | 8 | 79 | 138 | 209 | 6.34e-16 | 75.9 |
Find 62 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.1:+10583811 | MS.gene041144:CDS |
| AACCGTTGATTGAATTTCTA+AGG | 0.235120 | 5.1:+10581087 | MS.gene041144:CDS |
| GAACCATTTGGTTTATCATT+TGG | 0.243454 | 5.1:-10583799 | None:intergenic |
| GCTCTAACACTTTGTCTTGT+TGG | 0.268832 | 5.1:-10584138 | None:intergenic |
| AACCATTTGGTTTATCATTT+GGG | 0.271934 | 5.1:-10583798 | None:intergenic |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5.1:+10581014 | MS.gene041144:CDS |
| AGACATTTCGTGTTGATTCA+TGG | 0.318093 | 5.1:+10580921 | MS.gene041144:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.1:-10583811 | None:intergenic |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.1:-10581044 | None:intergenic |
| ATTGCAGAATACACAAAGAT+TGG | 0.373212 | 5.1:+10583738 | MS.gene041144:intron |
| CAGCTTGGACACAAAGATTA+CGG | 0.386498 | 5.1:+10583765 | MS.gene041144:CDS |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5.1:-10581040 | None:intergenic |
| AGATATGCACAAAGCGCTTT+CGG | 0.402700 | 5.1:-10584250 | None:intergenic |
| GTTACTTTGTTAAAATCTGC+TGG | 0.420158 | 5.1:+10580978 | MS.gene041144:CDS |
| CCCTTGCATTGTCATTACTA+AGG | 0.446862 | 5.1:+10584020 | MS.gene041144:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.464715 | 5.1:+10580946 | MS.gene041144:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.471584 | 5.1:-10584193 | None:intergenic |
| AGACTCAAGAAGCTTACATC+AGG | 0.478617 | 5.1:-10581239 | None:intergenic |
| CGTAATCTTTGTGTCCAAGC+TGG | 0.484193 | 5.1:-10583764 | None:intergenic |
| CTAAGGCCTGCTAGGAGCTA+TGG | 0.487770 | 5.1:+10584037 | MS.gene041144:CDS |
| AGCCCAAATGATAAACCAAA+TGG | 0.499816 | 5.1:+10583796 | MS.gene041144:CDS |
| TGGGGCATGGTGTTGGTACA+AGG | 0.499948 | 5.1:+10580953 | MS.gene041144:CDS |
| TTGGCACACAATGAACACTT+TGG | 0.501510 | 5.1:-10584119 | None:intergenic |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5.1:-10581016 | None:intergenic |
| TTGATTCATGGATCTTGCCA+TGG | 0.506866 | 5.1:+10580933 | MS.gene041144:CDS |
| ACCTTGGTTGCTAAGAATTG+TGG | 0.511072 | 5.1:-10583835 | None:intergenic |
| TGTCATTACTAAGGCCTGCT+AGG | 0.517957 | 5.1:+10584029 | MS.gene041144:CDS |
| GCCTTAGTAATGACAATGCA+AGG | 0.522441 | 5.1:-10584021 | None:intergenic |
| ATGGATCTTGCCATGGGGCA+TGG | 0.523884 | 5.1:+10580940 | MS.gene041144:CDS |
| TGATTCATGGATCTTGCCAT+GGG | 0.528952 | 5.1:+10580934 | MS.gene041144:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.1:+10581134 | MS.gene041144:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.1:+10581043 | MS.gene041144:CDS |
| ACAAAGATTGGATTCCAGCT+TGG | 0.539042 | 5.1:+10583750 | MS.gene041144:CDS |
| GACCTTAGAAATTCAATCAA+CGG | 0.539220 | 5.1:-10581089 | None:intergenic |
| TCATCACCATAGCTCCTAGC+AGG | 0.541402 | 5.1:-10584043 | None:intergenic |
| AGGATAACTCTCTGGTCTTG+TGG | 0.547320 | 5.1:-10581116 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.1:-10581177 | None:intergenic |
| GTAATGACAATGCAAGGGAC+AGG | 0.570287 | 5.1:-10584015 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.1:+10581137 | MS.gene041144:CDS |
| GACCCACTAGGATAACTCTC+TGG | 0.572600 | 5.1:-10581124 | None:intergenic |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.1:+10581160 | MS.gene041144:CDS |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5.1:-10581015 | None:intergenic |
| TGGAGATAGTTGATACACCT+TGG | 0.589354 | 5.1:-10583851 | None:intergenic |
| GACCAGAGAGTTATCCTAGT+GGG | 0.595402 | 5.1:+10581122 | MS.gene041144:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.599089 | 5.1:-10584192 | None:intergenic |
| ATAAGCCAGCATACCTCAGG+TGG | 0.609961 | 5.1:-10583871 | None:intergenic |
| AAGAAGCTTACATCAGGAGA+AGG | 0.612458 | 5.1:-10581233 | None:intergenic |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5.1:+10581004 | MS.gene041144:CDS |
| CTTCTTGAGTCTACTCCAAG+AGG | 0.623407 | 5.1:+10581250 | MS.gene041144:CDS |
| AGAGTCACAAAAGATAACTA+CGG | 0.623664 | 5.1:+10584088 | MS.gene041144:CDS |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.1:+10581154 | MS.gene041144:CDS |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5.1:-10583821 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.1:-10581136 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.1:+10581138 | MS.gene041144:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.1:-10580950 | None:intergenic |
| GCTTTCGGTTTAGAGAACAT+AGG | 0.656314 | 5.1:-10584235 | None:intergenic |
| GTTTAGAGAACATAGGCATG+TGG | 0.663433 | 5.1:-10584228 | None:intergenic |
| CCTTAGTAATGACAATGCAA+GGG | 0.667410 | 5.1:-10584020 | None:intergenic |
| ACCACAATTCTTAGCAACCA+AGG | 0.672825 | 5.1:+10583834 | MS.gene041144:CDS |
| GATTCATGGATCTTGCCATG+GGG | 0.682835 | 5.1:+10580935 | MS.gene041144:CDS |
| GTATCAACTATCTCCACCTG+AGG | 0.688226 | 5.1:+10583858 | MS.gene041144:CDS |
| AGACCAGAGAGTTATCCTAG+TGG | 0.747538 | 5.1:+10581121 | MS.gene041144:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATCCATATAATAAA+TGG | + | chr5.1:10581472-10581491 | MS.gene041144:intron | 10.0% |
| !! | AAAAAATCCATATAATAAAT+GGG | + | chr5.1:10581473-10581492 | MS.gene041144:intron | 10.0% |
| !! | AAATACATTAATTAATTCTT+GGG | + | chr5.1:10582882-10582901 | MS.gene041144:intron | 10.0% |
| !! | AAATTCAAAAATAATATAGT+TGG | + | chr5.1:10581386-10581405 | MS.gene041144:intron | 10.0% |
| !! | AATTCAAAAATAATATAGTT+GGG | + | chr5.1:10581387-10581406 | MS.gene041144:intron | 10.0% |
| !! | GAAAAAGATATAAAATAAAT+AGG | - | chr5.1:10583352-10583371 | None:intergenic | 10.0% |
| !! | TTAATTTAAAGAATTGATTA+TGG | - | chr5.1:10582167-10582186 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTCTTTTTTGTT+TGG | - | chr5.1:10581458-10581477 | None:intergenic | 10.0% |
| !! | AATCGTTAATTAACATATTA+AGG | - | chr5.1:10581604-10581623 | None:intergenic | 15.0% |
| !! | ATAAAAGAGATCTTATTATA+AGG | - | chr5.1:10582403-10582422 | None:intergenic | 15.0% |
| !! | ATCGTTAATTAACATATTAA+GGG | - | chr5.1:10581603-10581622 | None:intergenic | 15.0% |
| !! | ATTCAAAAATAATATAGTTG+GGG | + | chr5.1:10581388-10581407 | MS.gene041144:intron | 15.0% |
| !! | CAAATACATTAATTAATTCT+TGG | + | chr5.1:10582881-10582900 | MS.gene041144:intron | 15.0% |
| !! | GTGTAAATTAAGAAAATTAA+TGG | + | chr5.1:10581527-10581546 | MS.gene041144:intron | 15.0% |
| !! | TAAAAGAGATCTTATTATAA+GGG | - | chr5.1:10582402-10582421 | None:intergenic | 15.0% |
| !! | TATAATATTTATTATGAACC+TGG | - | chr5.1:10581677-10581696 | None:intergenic | 15.0% |
| !!! | CAAAGAATTTAAAAGTATTT+TGG | - | chr5.1:10583942-10583961 | None:intergenic | 15.0% |
| !! | AAGAATTAAGGAAAATTCTA+TGG | - | chr5.1:10583317-10583336 | None:intergenic | 20.0% |
| !! | AGAATTGATTATGGTATATT+TGG | - | chr5.1:10582158-10582177 | None:intergenic | 20.0% |
| !! | ATGTATTTGAAAATACCAAA+AGG | - | chr5.1:10582870-10582889 | None:intergenic | 20.0% |
| !! | CAGTAATTGAAGAAAAAATA+TGG | - | chr5.1:10583697-10583716 | None:intergenic | 20.0% |
| !! | TTTAACACATTATCTTTGAT+TGG | - | chr5.1:10582358-10582377 | None:intergenic | 20.0% |
| !!! | AGACAATTTTTTTCTTCAAA+AGG | - | chr5.1:10582834-10582853 | None:intergenic | 20.0% |
| !!! | TAAAATAAATAGGAGTATGT+TGG | - | chr5.1:10583342-10583361 | None:intergenic | 20.0% |
| !!! | TGATTTGTTAAAATTCACAT+AGG | + | chr5.1:10582276-10582295 | MS.gene041144:intron | 20.0% |
| !!! | TTCAAAAGGTCTTATATTTA+GGG | - | chr5.1:10582820-10582839 | None:intergenic | 20.0% |
| ! | AAAATGCTTATATATGAACC+AGG | + | chr5.1:10583991-10584010 | MS.gene041144:intron | 25.0% |
| ! | AACAAAAATAATAAAGGGAG+AGG | - | chr5.1:10582528-10582547 | None:intergenic | 25.0% |
| ! | ACTATTTCAGTCTAAACTTA+GGG | - | chr5.1:10583620-10583639 | None:intergenic | 25.0% |
| ! | AGTGAATTACTCACTTTAAA+AGG | + | chr5.1:10581650-10581669 | MS.gene041144:intron | 25.0% |
| ! | ATATGAGAAAGCTCAAAATA+AGG | - | chr5.1:10581287-10581306 | None:intergenic | 25.0% |
| ! | ATTGTCAATTTGTGAAAGTT+TGG | + | chr5.1:10583555-10583574 | MS.gene041144:intron | 25.0% |
| ! | CAATGTCATAAGAAATTGAA+TGG | + | chr5.1:10582592-10582611 | MS.gene041144:intron | 25.0% |
| ! | GAAGTTAAGAAAATTGAAAG+TGG | - | chr5.1:10583469-10583488 | None:intergenic | 25.0% |
| ! | TACTATTTCAGTCTAAACTT+AGG | - | chr5.1:10583621-10583640 | None:intergenic | 25.0% |
| ! | TCAAACAGAATCAATTCTAA+AGG | + | chr5.1:10582107-10582126 | MS.gene041144:intron | 25.0% |
| ! | TTAATAGTTATCATCAACTC+TGG | + | chr5.1:10581314-10581333 | MS.gene041144:intron | 25.0% |
| ! | TTGTCAATTTGTGAAAGTTT+GGG | + | chr5.1:10583556-10583575 | MS.gene041144:intron | 25.0% |
| ! | TTTAGTTGTCCAATTAAGAT+TGG | - | chr5.1:10581725-10581744 | None:intergenic | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | - | chr5.1:10581180-10581199 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTT+GGG | - | chr5.1:10583801-10583820 | None:intergenic | 25.0% |
| !! | AGTATGTTGGTAAAGAATTA+AGG | - | chr5.1:10583329-10583348 | None:intergenic | 25.0% |
| !! | CTCTTTTTATAAGATCCTTT+TGG | + | chr5.1:10582852-10582871 | MS.gene041144:intron | 25.0% |
| !! | CTTCAAAAGGTCTTATATTT+AGG | - | chr5.1:10582821-10582840 | None:intergenic | 25.0% |
| !! | GACAACTAAAAATCTTTTGA+CGG | + | chr5.1:10581735-10581754 | MS.gene041144:intron | 25.0% |
| !! | GTGAATTACTCACTTTAAAA+GGG | + | chr5.1:10581651-10581670 | MS.gene041144:intron | 25.0% |
| !! | TGATTGGTTAAAATTCACAT+GGG | - | chr5.1:10582342-10582361 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | chr5.1:10582343-10582362 | None:intergenic | 25.0% |
| !!! | CTTTATTCACTTTAGAGTTT+AGG | - | chr5.1:10581508-10581527 | None:intergenic | 25.0% |
| !!! | GGACACTTTTGAAAAAATAA+TGG | - | chr5.1:10583491-10583510 | None:intergenic | 25.0% |
| !!! | GGTTGCTTTCAATTTTTTAT+AGG | - | chr5.1:10583676-10583695 | None:intergenic | 25.0% |
| !!! | TCAAAAGTGTCCTATAATTA+AGG | + | chr5.1:10583499-10583518 | MS.gene041144:intron | 25.0% |
| !!! | TTTTGGCTAAATTTCACTTT+TGG | - | chr5.1:10583582-10583601 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCTCACTCAAGT+AGG | - | chr5.1:10582207-10582226 | None:intergenic | 25.0% |
| AAGATTCGTCCAATCTTAAT+TGG | + | chr5.1:10581713-10581732 | MS.gene041144:intron | 30.0% | |
| AGAGTCACAAAAGATAACTA+CGG | + | chr5.1:10584088-10584107 | MS.gene041144:CDS | 30.0% | |
| AGCTATGTGACAATTTATCA+CGG | + | chr5.1:10581920-10581939 | MS.gene041144:intron | 30.0% | |
| ATCCATATAATAAATGGGCA+AGG | + | chr5.1:10581478-10581497 | MS.gene041144:intron | 30.0% | |
| ATCCTTGCCCATTTATTATA+TGG | - | chr5.1:10581483-10581502 | None:intergenic | 30.0% | |
| ATTGCAGAATACACAAAGAT+TGG | + | chr5.1:10583738-10583757 | MS.gene041144:intron | 30.0% | |
| ATTGGTGCGATGATAATTAT+TGG | - | chr5.1:10582451-10582470 | None:intergenic | 30.0% | |
| ATTGTTTATTGCCTCATTAG+AGG | - | chr5.1:10582494-10582513 | None:intergenic | 30.0% | |
| ATTTGTAGAATGGCATCAAA+AGG | - | chr5.1:10583221-10583240 | None:intergenic | 30.0% | |
| CTATTTCAGTCTAAACTTAG+GGG | - | chr5.1:10583619-10583638 | None:intergenic | 30.0% | |
| GACCTTAGAAATTCAATCAA+CGG | - | chr5.1:10581092-10581111 | None:intergenic | 30.0% | |
| TAATAATGCTTGCAACATCT+TGG | + | chr5.1:10583019-10583038 | MS.gene041144:intron | 30.0% | |
| TAGATGATGTGTTAGTGATA+AGG | + | chr5.1:10581895-10581914 | MS.gene041144:intron | 30.0% | |
| TCATAAGAAATTGAATGGTG+AGG | + | chr5.1:10582597-10582616 | MS.gene041144:intron | 30.0% | |
| TCATTTATCTCTATCACAAC+CGG | + | chr5.1:10582567-10582586 | MS.gene041144:intron | 30.0% | |
| TCTAATGAGGCAATAAACAA+TGG | + | chr5.1:10582493-10582512 | MS.gene041144:intron | 30.0% | |
| TCTTAAGTGTTACACTTTGT+GGG | + | chr5.1:10583110-10583129 | MS.gene041144:intron | 30.0% | |
| TTGTAGGACCCATATAAATT+TGG | + | chr5.1:10582311-10582330 | MS.gene041144:intron | 30.0% | |
| ! | AACCGTTGATTGAATTTCTA+AGG | + | chr5.1:10581087-10581106 | MS.gene041144:CDS | 30.0% |
| ! | ATTTGAGATACGTTCTTCAT+GGG | - | chr5.1:10582675-10582694 | None:intergenic | 30.0% |
| ! | GAACCATTTGGTTTATCATT+TGG | - | chr5.1:10583802-10583821 | None:intergenic | 30.0% |
| ! | GTTACTTTGTTAAAATCTGC+TGG | + | chr5.1:10580978-10580997 | MS.gene041144:CDS | 30.0% |
| ! | TACATGCACTATTTTATCGT+TGG | + | chr5.1:10583045-10583064 | MS.gene041144:intron | 30.0% |
| ! | TCTTTTATCTCAGTCATTAG+AGG | + | chr5.1:10582415-10582434 | MS.gene041144:intron | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | - | chr5.1:10583291-10583310 | None:intergenic | 30.0% |
| !!! | GGGTGAGTTGTAATTTTTTT+TGG | - | chr5.1:10583599-10583618 | None:intergenic | 30.0% |
| AAGGATAATCAAGTACCTCT+TGG | - | chr5.1:10581268-10581287 | None:intergenic | 35.0% | |
| AAGGCGGTACTTTAAATTTG+GGG | + | chr5.1:10583525-10583544 | MS.gene041144:intron | 35.0% | |
| AATTTCTTATGACATTGCCC+CGG | - | chr5.1:10582589-10582608 | None:intergenic | 35.0% | |
| ACACTAACTCTCTCTCATAA+AGG | + | chr5.1:10583404-10583423 | MS.gene041144:intron | 35.0% | |
| AGCCCAAATGATAAACCAAA+TGG | + | chr5.1:10583796-10583815 | MS.gene041144:CDS | 35.0% | |
| AGGACCCATATAAATTTGGT+GGG | + | chr5.1:10582315-10582334 | MS.gene041144:intron | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | - | chr5.1:10584196-10584215 | None:intergenic | 35.0% | |
| ATGCCATTCTACAAATAGTG+GGG | + | chr5.1:10583225-10583244 | MS.gene041144:intron | 35.0% | |
| ATTTATCTCTATCACAACCG+GGG | + | chr5.1:10582569-10582588 | MS.gene041144:intron | 35.0% | |
| CATTTATCTCTATCACAACC+GGG | + | chr5.1:10582568-10582587 | MS.gene041144:intron | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | - | chr5.1:10583814-10583833 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | + | chr5.1:10583811-10583830 | MS.gene041144:CDS | 35.0% | |
| CCTTAGTAATGACAATGCAA+GGG | - | chr5.1:10584023-10584042 | None:intergenic | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | + | chr5.1:10583111-10583130 | MS.gene041144:intron | 35.0% | |
| GAAGGCGGTACTTTAAATTT+GGG | + | chr5.1:10583524-10583543 | MS.gene041144:intron | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | - | chr5.1:10583824-10583843 | None:intergenic | 35.0% | |
| GATGCCATTCTACAAATAGT+GGG | + | chr5.1:10583224-10583243 | MS.gene041144:intron | 35.0% | |
| GTCTTAAGTGTTACACTTTG+TGG | + | chr5.1:10583109-10583128 | MS.gene041144:intron | 35.0% | |
| TAGGACCCATATAAATTTGG+TGG | + | chr5.1:10582314-10582333 | MS.gene041144:intron | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | - | chr5.1:10584195-10584214 | None:intergenic | 35.0% | |
| TCATCGCACCAATAAAGTAT+TGG | + | chr5.1:10582458-10582477 | MS.gene041144:intron | 35.0% | |
| TCATCGCACCAATACTTTAT+TGG | - | chr5.1:10582469-10582488 | None:intergenic | 35.0% | |
| TGATGCCATTCTACAAATAG+TGG | + | chr5.1:10583223-10583242 | MS.gene041144:intron | 35.0% | |
| TGTCCTATAATTAAGGACGA+AGG | + | chr5.1:10583506-10583525 | MS.gene041144:intron | 35.0% | |
| TTAATTCTTGGGAGCTTCTA+CGG | + | chr5.1:10582893-10582912 | MS.gene041144:intron | 35.0% | |
| ! | AAGGTCTTATATTTAGGGAC+AGG | - | chr5.1:10582815-10582834 | None:intergenic | 35.0% |
| ! | AGGTCTTATATTTAGGGACA+GGG | - | chr5.1:10582814-10582833 | None:intergenic | 35.0% |
| ! | CACTCATGTGATATTTTCGT+TGG | - | chr5.1:10582644-10582663 | None:intergenic | 35.0% |
| ! | GATATTTTCGTTGGAGGAAA+TGG | - | chr5.1:10582635-10582654 | None:intergenic | 35.0% |
| ! | GATGAATTGATGATACTCTG+AGG | + | chr5.1:10583190-10583209 | MS.gene041144:intron | 35.0% |
| ! | GATTTGAGATACGTTCTTCA+TGG | - | chr5.1:10582676-10582695 | None:intergenic | 35.0% |
| ! | TCATGTGATATTTTCGTTGG+AGG | - | chr5.1:10582641-10582660 | None:intergenic | 35.0% |
| !! | AGACATTTCGTGTTGATTCA+TGG | + | chr5.1:10580921-10580940 | MS.gene041144:CDS | 35.0% |
| AAGAAGCTTACATCAGGAGA+AGG | - | chr5.1:10581236-10581255 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | + | chr5.1:10583750-10583769 | MS.gene041144:CDS | 40.0% | |
| ACACCCCACTATTTGTAGAA+TGG | - | chr5.1:10583231-10583250 | None:intergenic | 40.0% | |
| ACCACAATTCTTAGCAACCA+AGG | + | chr5.1:10583834-10583853 | MS.gene041144:CDS | 40.0% | |
| ACCTTGGTTGCTAAGAATTG+TGG | - | chr5.1:10583838-10583857 | None:intergenic | 40.0% | |
| AGACTCAAGAAGCTTACATC+AGG | - | chr5.1:10581242-10581261 | None:intergenic | 40.0% | |
| AGGCGGTACTTTAAATTTGG+GGG | + | chr5.1:10583526-10583545 | MS.gene041144:intron | 40.0% | |
| CAGCTTGGACACAAAGATTA+CGG | + | chr5.1:10583765-10583784 | MS.gene041144:CDS | 40.0% | |
| CCCTTGCATTGTCATTACTA+AGG | + | chr5.1:10584020-10584039 | MS.gene041144:CDS | 40.0% | |
| CCTATAATTAAGGACGAAGG+CGG | + | chr5.1:10583509-10583528 | MS.gene041144:intron | 40.0% | |
| CGAAGGCGGTACTTTAAATT+TGG | + | chr5.1:10583523-10583542 | MS.gene041144:intron | 40.0% | |
| CGTAACATGCACTTGAGATA+TGG | - | chr5.1:10582784-10582803 | None:intergenic | 40.0% | |
| GCCTTAGTAATGACAATGCA+AGG | - | chr5.1:10584024-10584043 | None:intergenic | 40.0% | |
| GCTCTAACACTTTGTCTTGT+TGG | - | chr5.1:10584141-10584160 | None:intergenic | 40.0% | |
| GCTTTCGGTTTAGAGAACAT+AGG | - | chr5.1:10584238-10584257 | None:intergenic | 40.0% | |
| GGGTCCCACCAAATTTATAT+GGG | - | chr5.1:10582322-10582341 | None:intergenic | 40.0% | |
| GTTTAGAGAACATAGGCATG+TGG | - | chr5.1:10584231-10584250 | None:intergenic | 40.0% | |
| TAGGTTCCAGCAAATCTTGT+AGG | + | chr5.1:10582295-10582314 | MS.gene041144:intron | 40.0% | |
| TGATTCATGGATCTTGCCAT+GGG | + | chr5.1:10580934-10580953 | MS.gene041144:CDS | 40.0% | |
| TGGGTCCCACCAAATTTATA+TGG | - | chr5.1:10582323-10582342 | None:intergenic | 40.0% | |
| TTGATTCATGGATCTTGCCA+TGG | + | chr5.1:10580933-10580952 | MS.gene041144:CDS | 40.0% | |
| TTGGCACACAATGAACACTT+TGG | - | chr5.1:10584122-10584141 | None:intergenic | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | - | chr5.1:10581194-10581213 | None:intergenic | 40.0% |
| ! | AGATATGCACAAAGCGCTTT+CGG | - | chr5.1:10584253-10584272 | None:intergenic | 40.0% |
| ! | TGGAGATAGTTGATACACCT+TGG | - | chr5.1:10583854-10583873 | None:intergenic | 40.0% |
| ! | TTACTCACTTTAAAAGGGCC+AGG | + | chr5.1:10581656-10581675 | MS.gene041144:intron | 40.0% |
| AACATAAGCCAGCATACCTC+AGG | - | chr5.1:10583877-10583896 | None:intergenic | 45.0% | |
| AGACCAGAGAGTTATCCTAG+TGG | + | chr5.1:10581121-10581140 | MS.gene041144:CDS | 45.0% | |
| AGGTGGGATGTGTATATCTG+TGG | + | chr5.1:10581154-10581173 | MS.gene041144:CDS | 45.0% | |
| ATGGGTCCTACAAGATTTGC+TGG | - | chr5.1:10582304-10582323 | None:intergenic | 45.0% | |
| CCGCCTTCGTCCTTAATTAT+AGG | - | chr5.1:10583512-10583531 | None:intergenic | 45.0% | |
| CGTAATCTTTGTGTCCAAGC+TGG | - | chr5.1:10583767-10583786 | None:intergenic | 45.0% | |
| CTTCTTGAGTCTACTCCAAG+AGG | + | chr5.1:10581250-10581269 | MS.gene041144:CDS | 45.0% | |
| GACCAGAGAGTTATCCTAGT+GGG | + | chr5.1:10581122-10581141 | MS.gene041144:CDS | 45.0% | |
| GATACGTTCTTCATGGGATG+AGG | - | chr5.1:10582669-10582688 | None:intergenic | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | + | chr5.1:10581160-10581179 | MS.gene041144:CDS | 45.0% | |
| GATTCATGGATCTTGCCATG+GGG | + | chr5.1:10580935-10580954 | MS.gene041144:CDS | 45.0% | |
| GTAATGACAATGCAAGGGAC+AGG | - | chr5.1:10584018-10584037 | None:intergenic | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | + | chr5.1:10583858-10583877 | MS.gene041144:CDS | 45.0% | |
| GTGCGATGATTCCTCTAATG+AGG | + | chr5.1:10582480-10582499 | MS.gene041144:intron | 45.0% | |
| TGCACTTGAGATATGGCTCA+CGG | - | chr5.1:10582777-10582796 | None:intergenic | 45.0% | |
| TGTCATTACTAAGGCCTGCT+AGG | + | chr5.1:10584029-10584048 | MS.gene041144:CDS | 45.0% | |
| TGTGACTCGTGTATCTAACG+AGG | + | chr5.1:10581348-10581367 | MS.gene041144:intron | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | + | chr5.1:10581134-10581153 | MS.gene041144:CDS | 45.0% |
| ! | GGGGTGTTACGCTTATAACA+AGG | + | chr5.1:10583130-10583149 | MS.gene041144:intron | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | + | chr5.1:10581138-10581157 | MS.gene041144:CDS | 45.0% |
| !! | AGGATAACTCTCTGGTCTTG+TGG | - | chr5.1:10581119-10581138 | None:intergenic | 45.0% |
| !! | AATTATAACAAAAATAATAA+AGG | - | chr5.1:10582534-10582553 | None:intergenic | 5.0% |
| !! | ATTATAACAAAAATAATAAA+GGG | - | chr5.1:10582533-10582552 | None:intergenic | 5.0% |
| ATAAGCCAGCATACCTCAGG+TGG | - | chr5.1:10583874-10583893 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | - | chr5.1:10581139-10581158 | None:intergenic | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | + | chr5.1:10581004-10581023 | MS.gene041144:CDS | 50.0% | |
| GACCCACTAGGATAACTCTC+TGG | - | chr5.1:10581127-10581146 | None:intergenic | 50.0% | |
| TATCTCCACCTGAGGTATGC+TGG | + | chr5.1:10583866-10583885 | MS.gene041144:intron | 50.0% | |
| TCATCACCATAGCTCCTAGC+AGG | - | chr5.1:10584046-10584065 | None:intergenic | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | + | chr5.1:10581043-10581062 | MS.gene041144:CDS | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | - | chr5.1:10581018-10581037 | None:intergenic | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | - | chr5.1:10581047-10581066 | None:intergenic | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | - | chr5.1:10581019-10581038 | None:intergenic | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | + | chr5.1:10581137-10581156 | MS.gene041144:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | - | chr5.1:10581043-10581062 | None:intergenic | 50.0% |
| ACAATGCAAGGGACAGGTCC+TGG | - | chr5.1:10584012-10584031 | None:intergenic | 55.0% | |
| ACCCTAGACATGGCTGCTTC+TGG | + | chr5.1:10581014-10581033 | MS.gene041144:CDS | 55.0% | |
| ATGGATCTTGCCATGGGGCA+TGG | + | chr5.1:10580940-10580959 | MS.gene041144:CDS | 55.0% | |
| CTAAGGCCTGCTAGGAGCTA+TGG | + | chr5.1:10584037-10584056 | MS.gene041144:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | - | chr5.1:10580953-10580972 | None:intergenic | 55.0% | |
| !! | TGGGGCATGGTGTTGGTACA+AGG | + | chr5.1:10580953-10580972 | MS.gene041144:CDS | 55.0% |
| CTTGCCATGGGGCATGGTGT+TGG | + | chr5.1:10580946-10580965 | MS.gene041144:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 10580903 | 10584300 | 10580903 | ID=MS.gene041144 |
| chr5.1 | mRNA | 10580903 | 10584300 | 10580903 | ID=MS.gene041144.t1;Parent=MS.gene041144 |
| chr5.1 | exon | 10580903 | 10581271 | 10580903 | ID=MS.gene041144.t1.exon1;Parent=MS.gene041144.t1 |
| chr5.1 | CDS | 10580903 | 10581271 | 10580903 | ID=cds.MS.gene041144.t1;Parent=MS.gene041144.t1 |
| chr5.1 | exon | 10583745 | 10583879 | 10583745 | ID=MS.gene041144.t1.exon2;Parent=MS.gene041144.t1 |
| chr5.1 | CDS | 10583745 | 10583879 | 10583745 | ID=cds.MS.gene041144.t1;Parent=MS.gene041144.t1 |
| chr5.1 | exon | 10584013 | 10584300 | 10584013 | ID=MS.gene041144.t1.exon3;Parent=MS.gene041144.t1 |
| chr5.1 | CDS | 10584013 | 10584300 | 10584013 | ID=cds.MS.gene041144.t1;Parent=MS.gene041144.t1 |
| Gene Sequence |
| Protein sequence |
