Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041145.t1 | XP_003611830.1 | 92.7 | 260 | 6 | 1 | 1 | 247 | 1 | 260 | 9.90E-131 | 476.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041145.t1 | A2WYS8 | 42.6 | 258 | 132 | 3 | 4 | 246 | 6 | 262 | 1.8e-56 | 220.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041145.t1 | G7K9E5 | 92.7 | 260 | 6 | 1 | 1 | 247 | 1 | 260 | 7.2e-131 | 476.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011884 | MS.gene041145 | PPI |
| MS.gene44962 | MS.gene041145 | PPI |
| MS.gene28543 | MS.gene041145 | PPI |
| MS.gene047689 | MS.gene041145 | PPI |
| MS.gene87350 | MS.gene041145 | PPI |
| MS.gene041145 | MS.gene041151 | PPI |
| MS.gene010412 | MS.gene041145 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041145.t1 | MTR_5g018320 | 92.692 | 260 | 6 | 1 | 1 | 247 | 1 | 260 | 5.91e-180 | 494 |
| MS.gene041145.t1 | MTR_5g018300 | 83.658 | 257 | 29 | 1 | 4 | 247 | 7 | 263 | 7.95e-161 | 446 |
| MS.gene041145.t1 | MTR_5g018280 | 79.087 | 263 | 38 | 3 | 1 | 247 | 1 | 262 | 3.95e-149 | 416 |
| MS.gene041145.t1 | MTR_8g007675 | 53.125 | 256 | 105 | 3 | 5 | 246 | 32 | 286 | 5.63e-92 | 273 |
| MS.gene041145.t1 | MTR_8g008500 | 52.290 | 262 | 107 | 5 | 2 | 246 | 24 | 284 | 6.96e-88 | 262 |
| MS.gene041145.t1 | MTR_8g008505 | 49.231 | 260 | 116 | 4 | 1 | 246 | 24 | 281 | 1.80e-83 | 251 |
| MS.gene041145.t1 | MTR_3g464040 | 48.462 | 260 | 116 | 3 | 1 | 246 | 15 | 270 | 2.51e-83 | 250 |
| MS.gene041145.t1 | MTR_8g008660 | 47.876 | 259 | 117 | 4 | 2 | 246 | 24 | 278 | 2.80e-81 | 245 |
| MS.gene041145.t1 | MTR_8g007670 | 45.349 | 258 | 125 | 4 | 4 | 246 | 6 | 262 | 5.36e-75 | 228 |
| MS.gene041145.t1 | MTR_8g079120 | 43.798 | 258 | 123 | 5 | 4 | 246 | 10 | 260 | 4.24e-68 | 211 |
| MS.gene041145.t1 | MTR_8g007670 | 39.535 | 258 | 96 | 4 | 4 | 246 | 6 | 218 | 6.51e-59 | 186 |
| MS.gene041145.t1 | MTR_5g018350 | 39.773 | 264 | 133 | 6 | 1 | 246 | 1 | 256 | 1.25e-58 | 186 |
| MS.gene041145.t1 | MTR_5g018365 | 40.698 | 258 | 131 | 4 | 4 | 246 | 11 | 261 | 6.31e-56 | 180 |
| MS.gene041145.t1 | MTR_7g015220 | 39.453 | 256 | 138 | 3 | 1 | 243 | 120 | 371 | 9.94e-52 | 172 |
| MS.gene041145.t1 | MTR_8g079120 | 48.171 | 164 | 78 | 3 | 4 | 165 | 52 | 210 | 1.38e-50 | 164 |
| MS.gene041145.t1 | MTR_3g005410 | 34.351 | 262 | 144 | 5 | 1 | 243 | 90 | 342 | 3.06e-43 | 149 |
| MS.gene041145.t1 | MTR_5g068100 | 34.766 | 256 | 150 | 2 | 4 | 246 | 29 | 280 | 1.34e-39 | 138 |
| MS.gene041145.t1 | MTR_3g093730 | 34.766 | 256 | 149 | 3 | 1 | 243 | 32 | 282 | 1.84e-37 | 133 |
| MS.gene041145.t1 | MTR_3g093730 | 44.860 | 107 | 59 | 0 | 1 | 107 | 32 | 138 | 1.22e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041145.t1 | AT2G23610 | 42.529 | 261 | 126 | 6 | 4 | 246 | 8 | 262 | 4.88e-67 | 208 |
| MS.gene041145.t1 | AT3G50440 | 41.406 | 256 | 132 | 4 | 6 | 246 | 22 | 274 | 1.17e-65 | 205 |
| MS.gene041145.t1 | AT2G23560 | 44.106 | 263 | 121 | 7 | 2 | 246 | 5 | 259 | 4.36e-65 | 203 |
| MS.gene041145.t1 | AT2G23620 | 40.078 | 257 | 138 | 3 | 4 | 246 | 8 | 262 | 5.72e-63 | 198 |
| MS.gene041145.t1 | AT2G23580 | 42.586 | 263 | 128 | 7 | 2 | 246 | 5 | 262 | 6.68e-61 | 192 |
| MS.gene041145.t1 | AT2G23600 | 38.911 | 257 | 141 | 3 | 4 | 246 | 8 | 262 | 5.62e-59 | 187 |
| MS.gene041145.t1 | AT2G23600 | 38.911 | 257 | 141 | 3 | 4 | 246 | 23 | 277 | 9.71e-59 | 187 |
| MS.gene041145.t1 | AT4G37150 | 39.695 | 262 | 131 | 7 | 4 | 246 | 2 | 255 | 4.59e-58 | 185 |
| MS.gene041145.t1 | AT2G23550 | 40.684 | 263 | 133 | 7 | 2 | 246 | 5 | 262 | 5.82e-56 | 180 |
| MS.gene041145.t1 | AT2G23550 | 40.684 | 263 | 133 | 7 | 2 | 246 | 12 | 269 | 6.61e-56 | 180 |
| MS.gene041145.t1 | AT5G10300 | 39.922 | 258 | 133 | 4 | 5 | 246 | 6 | 257 | 4.14e-55 | 177 |
| MS.gene041145.t1 | AT2G23590 | 36.293 | 259 | 142 | 3 | 1 | 246 | 23 | 271 | 4.14e-54 | 176 |
| MS.gene041145.t1 | AT2G23610 | 37.354 | 257 | 100 | 6 | 4 | 246 | 8 | 217 | 2.53e-51 | 167 |
| MS.gene041145.t1 | AT3G29770 | 38.672 | 256 | 140 | 3 | 1 | 243 | 134 | 385 | 2.20e-48 | 164 |
| MS.gene041145.t1 | AT1G26360 | 36.863 | 255 | 144 | 3 | 2 | 243 | 186 | 436 | 4.44e-48 | 164 |
| MS.gene041145.t1 | AT5G58310 | 34.100 | 261 | 155 | 4 | 1 | 245 | 1 | 260 | 5.14e-47 | 157 |
| MS.gene041145.t1 | AT2G23600 | 42.945 | 163 | 92 | 1 | 4 | 165 | 23 | 185 | 9.77e-45 | 149 |
| MS.gene041145.t1 | AT1G69240 | 35.000 | 260 | 144 | 5 | 2 | 243 | 184 | 436 | 1.32e-44 | 155 |
| MS.gene041145.t1 | AT4G09900 | 33.462 | 260 | 149 | 4 | 1 | 243 | 94 | 346 | 1.34e-42 | 148 |
| MS.gene041145.t1 | AT1G33990 | 34.241 | 257 | 145 | 4 | 4 | 243 | 96 | 345 | 4.62e-42 | 146 |
| MS.gene041145.t1 | AT4G16690 | 35.547 | 256 | 130 | 5 | 5 | 239 | 12 | 253 | 9.76e-42 | 143 |
| MS.gene041145.t1 | AT2G23580 | 44.311 | 167 | 85 | 4 | 2 | 163 | 5 | 168 | 1.41e-41 | 141 |
| MS.gene041145.t1 | AT2G23550 | 35.878 | 262 | 118 | 7 | 2 | 246 | 5 | 233 | 1.42e-41 | 142 |
| MS.gene041145.t1 | AT5G10300 | 43.353 | 173 | 91 | 2 | 5 | 174 | 6 | 174 | 1.42e-40 | 139 |
| MS.gene041145.t1 | AT4G37140 | 51.429 | 105 | 51 | 0 | 4 | 108 | 2 | 106 | 1.35e-39 | 134 |
| MS.gene041145.t1 | AT2G23550 | 44.311 | 167 | 85 | 4 | 2 | 163 | 12 | 175 | 7.77e-39 | 134 |
| MS.gene041145.t1 | AT3G10870 | 33.730 | 252 | 153 | 4 | 5 | 243 | 20 | 270 | 9.14e-39 | 136 |
| MS.gene041145.t1 | AT4G37140 | 50.549 | 91 | 45 | 0 | 4 | 94 | 2 | 92 | 1.71e-32 | 114 |
| MS.gene041145.t1 | AT2G23570 | 42.077 | 183 | 84 | 6 | 81 | 246 | 1 | 178 | 4.48e-30 | 110 |
| MS.gene041145.t1 | AT3G29770 | 44.156 | 77 | 43 | 0 | 1 | 77 | 134 | 210 | 4.85e-18 | 81.6 |
Find 57 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.1:+10567954 | MS.gene041145:CDS |
| CCCTTGCAATGTCTTTAATA+AGG | 0.211857 | 5.1:+10568123 | MS.gene041145:CDS |
| GAACCATTTGGTTTATCATT+AGG | 0.217887 | 5.1:-10567942 | None:intergenic |
| AACCATTTGGTTTATCATTA+GGG | 0.239611 | 5.1:-10567941 | None:intergenic |
| TTTGCTGATCAAGAACTATT+AGG | 0.294996 | 5.1:+10568158 | MS.gene041145:CDS |
| ACCCTAGACATGGCTGCTTC+TGG | 0.309439 | 5.1:+10565807 | MS.gene041145:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.1:-10567954 | None:intergenic |
| AGACATTTCGTGTTGGTTCA+TGG | 0.351633 | 5.1:+10565714 | MS.gene041145:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.1:-10565837 | None:intergenic |
| ATTGCAGTATCAACAAAGAT+TGG | 0.372297 | 5.1:+10567881 | MS.gene041145:intron |
| CTCTTTCGGTTTGGAGAACA+TGG | 0.400553 | 5.1:-10568337 | None:intergenic |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5.1:-10565833 | None:intergenic |
| GCGTATCTTCAAGAAATTGC+GGG | 0.452472 | 5.1:+10568366 | MS.gene041145:CDS |
| ATTGCTCTGTTGAAATCTGC+TGG | 0.456073 | 5.1:+10565771 | MS.gene041145:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.457852 | 5.1:+10565739 | MS.gene041145:CDS |
| TTGGTTCATGGAGCTTGCCA+TGG | 0.459523 | 5.1:+10565726 | MS.gene041145:CDS |
| AGAGTCAAGAAGCTTAGATC+AGG | 0.464438 | 5.1:-10566032 | None:intergenic |
| AGTGTCACACAAAACAACTA+TGG | 0.473238 | 5.1:+10568191 | MS.gene041145:CDS |
| CATAATCTTTGTGTCCAAGC+TGG | 0.478530 | 5.1:-10567907 | None:intergenic |
| TGGTTCATGGAGCTTGCCAT+GGG | 0.483424 | 5.1:+10565727 | MS.gene041145:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.486986 | 5.1:-10568294 | None:intergenic |
| TGATCAGCAAAGCTACGAAC+AGG | 0.487222 | 5.1:-10568146 | None:intergenic |
| ATGGAGCTTGCCATGGGGCA+TGG | 0.500266 | 5.1:+10565733 | MS.gene041145:CDS |
| TTCCAGAAGCAGCCATGTCT+AGG | 0.502599 | 5.1:-10565809 | None:intergenic |
| GCCTTATTAAAGACATTGCA+AGG | 0.509202 | 5.1:-10568124 | None:intergenic |
| AGCCCTAATGATAAACCAAA+TGG | 0.509653 | 5.1:+10567939 | MS.gene041145:CDS |
| AGGATAACTCTTTGCTCTTG+TGG | 0.521619 | 5.1:-10565909 | None:intergenic |
| ACAAAGATTGGATTCCAGCT+TGG | 0.525705 | 5.1:+10567893 | MS.gene041145:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.1:+10565927 | MS.gene041145:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.1:+10565836 | MS.gene041145:CDS |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.1:-10565970 | None:intergenic |
| GATCTTAGAAATTCAATCAA+CGG | 0.558595 | 5.1:-10565882 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.1:+10565930 | MS.gene041145:CDS |
| TGGAGACAGTTGATACAACT+TGG | 0.572318 | 5.1:-10567994 | None:intergenic |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.1:+10565953 | MS.gene041145:CDS |
| TCCAGAAGCAGCCATGTCTA+GGG | 0.584704 | 5.1:-10565808 | None:intergenic |
| TGCGTATCTTCAAGAAATTG+CGG | 0.593654 | 5.1:+10568365 | MS.gene041145:CDS |
| GAGCAAAGAGTTATCCTAGT+GGG | 0.595319 | 5.1:+10565915 | MS.gene041145:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.601541 | 5.1:-10568293 | None:intergenic |
| AAGAAGCTTAGATCAGGAGA+AGG | 0.607709 | 5.1:-10566026 | None:intergenic |
| CGTATCTTCAAGAAATTGCG+GGG | 0.611463 | 5.1:+10568367 | MS.gene041145:CDS |
| CTTCTTGACTCTTCTCCAAG+AGG | 0.614857 | 5.1:+10566043 | MS.gene041145:CDS |
| CGAAGTCACAACCCTAGACA+TGG | 0.616290 | 5.1:+10565797 | MS.gene041145:CDS |
| GTATCAACTGTCTCCACCTG+AGG | 0.617568 | 5.1:+10568001 | MS.gene041145:CDS |
| GGATACAAGACATTTCGTGT+TGG | 0.618681 | 5.1:+10565707 | MS.gene041145:CDS |
| GAACTGTGGTCCAAATAACA+TGG | 0.625548 | 5.1:-10567964 | None:intergenic |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.1:+10565947 | MS.gene041145:CDS |
| ATTAGCCAGCATACCTCAGG+TGG | 0.628093 | 5.1:-10568014 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.1:-10565929 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.1:+10565931 | MS.gene041145:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.1:-10565743 | None:intergenic |
| GATTGTTGATGCTGATCACA+TGG | 0.672431 | 5.1:+10568314 | MS.gene041145:CDS |
| CCTTATTAAAGACATTGCAA+GGG | 0.676815 | 5.1:-10568123 | None:intergenic |
| AACTTGGTTGCTAAGAACTG+TGG | 0.677365 | 5.1:-10567978 | None:intergenic |
| GGTTCATGGAGCTTGCCATG+GGG | 0.706151 | 5.1:+10565728 | MS.gene041145:CDS |
| GTATCTTCAAGAAATTGCGG+GGG | 0.724507 | 5.1:+10568368 | MS.gene041145:CDS |
| AGAGCAAAGAGTTATCCTAG+TGG | 0.738096 | 5.1:+10565914 | MS.gene041145:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGATCATAATTATAAT+AGG | + | chr5.1:10566569-10566588 | MS.gene041145:intron | 10.0% |
| !!! | AAATCTATTTTATATGAATA+TGG | - | chr5.1:10567169-10567188 | None:intergenic | 10.0% |
| !!! | ATAGTTTTGATTTTAAAATT+AGG | - | chr5.1:10567743-10567762 | None:intergenic | 10.0% |
| !!! | TAGTTTTGATTTTAAAATTA+GGG | - | chr5.1:10567742-10567761 | None:intergenic | 10.0% |
| !! | AATTGATGAAGAAAAAAAAA+TGG | - | chr5.1:10567836-10567855 | None:intergenic | 15.0% |
| !! | CTAAAATACAATAAAGATTA+TGG | + | chr5.1:10566315-10566334 | MS.gene041145:intron | 15.0% |
| !! | TTTAACCCTTATATAATTTA+AGG | - | chr5.1:10567661-10567680 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTAAAATTAG+GGG | - | chr5.1:10567741-10567760 | None:intergenic | 15.0% |
| !!! | TGGTTACTTAATTTTTTTAT+AGG | - | chr5.1:10567816-10567835 | None:intergenic | 15.0% |
| !!! | TTTAAAATTAAGATAAAGAG+TGG | + | chr5.1:10567624-10567643 | MS.gene041145:intron | 15.0% |
| !! | AACACTTATTTAATCCTTAA+AGG | + | chr5.1:10567122-10567141 | MS.gene041145:intron | 20.0% |
| !! | AACGAGTAAAAATAAAAAGA+TGG | + | chr5.1:10566843-10566862 | MS.gene041145:intron | 20.0% |
| !! | AGTAATATAACATACCTTTA+AGG | - | chr5.1:10567139-10567158 | None:intergenic | 20.0% |
| !! | ATACAATAAAGATTATGGAT+AGG | + | chr5.1:10566320-10566339 | MS.gene041145:intron | 20.0% |
| !! | CCTTTCCTTAAATTATATAA+GGG | + | chr5.1:10567653-10567672 | MS.gene041145:intron | 20.0% |
| !! | TAAAAAGATGGTATGTTTAT+AGG | + | chr5.1:10566855-10566874 | MS.gene041145:intron | 20.0% |
| !! | TCAATATGCTTAAATTCTTT+GGG | + | chr5.1:10568044-10568063 | MS.gene041145:intron | 20.0% |
| !! | TCCTTTCCTTAAATTATATA+AGG | + | chr5.1:10567652-10567671 | MS.gene041145:intron | 20.0% |
| !! | TTCAATATGCTTAAATTCTT+TGG | + | chr5.1:10568043-10568062 | MS.gene041145:intron | 20.0% |
| !!! | AGAAAATCAAATTTTGGAAA+AGG | + | chr5.1:10567773-10567792 | MS.gene041145:intron | 20.0% |
| !!! | AGAAACAGAAAATCAAATTT+TGG | + | chr5.1:10567767-10567786 | MS.gene041145:intron | 20.0% |
| !!! | CATATATCACATTTCTTTTT+TGG | - | chr5.1:10566599-10566618 | None:intergenic | 20.0% |
| !!! | TCTTTATTGTATTTTAGCTA+AGG | - | chr5.1:10566312-10566331 | None:intergenic | 20.0% |
| !!! | TTTCTATTTTTTCATGTGTT+TGG | - | chr5.1:10567695-10567714 | None:intergenic | 20.0% |
| ! | AACCAAAGATTGTATACTTA+CGG | - | chr5.1:10566729-10566748 | None:intergenic | 25.0% |
| ! | AATCGAAATATGATATGTTG+AGG | + | chr5.1:10566432-10566451 | MS.gene041145:intron | 25.0% |
| ! | ACTAATAAACAAATAGGAGT+GGG | + | chr5.1:10567475-10567494 | MS.gene041145:intron | 25.0% |
| ! | ACTATATCATAAACCTCTAT+CGG | - | chr5.1:10566361-10566380 | None:intergenic | 25.0% |
| ! | AGTTTCAAAAATAATCTAGC+TGG | + | chr5.1:10566231-10566250 | MS.gene041145:intron | 25.0% |
| ! | CCCTTATATAATTTAAGGAA+AGG | - | chr5.1:10567656-10567675 | None:intergenic | 25.0% |
| ! | GATCTTAGAAATTCAATCAA+CGG | - | chr5.1:10565885-10565904 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATAATCTAGCT+GGG | + | chr5.1:10566232-10566251 | MS.gene041145:intron | 25.0% |
| ! | TAAATGCTTATATATGAACC+AGG | + | chr5.1:10568094-10568113 | MS.gene041145:intron | 25.0% |
| ! | TCATAGCTATCATCAAATTT+GGG | + | chr5.1:10566102-10566121 | MS.gene041145:intron | 25.0% |
| ! | TGATGATAGCTATGAAATAT+GGG | - | chr5.1:10566097-10566116 | None:intergenic | 25.0% |
| ! | TTCATAGCTATCATCAAATT+TGG | + | chr5.1:10566101-10566120 | MS.gene041145:intron | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | - | chr5.1:10565973-10565992 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTA+GGG | - | chr5.1:10567944-10567963 | None:intergenic | 25.0% |
| !! | TTCACATGTGTTATTGTATA+GGG | - | chr5.1:10566939-10566958 | None:intergenic | 25.0% |
| !! | TTGATGATAGCTATGAAATA+TGG | - | chr5.1:10566098-10566117 | None:intergenic | 25.0% |
| !! | TTTCACATGTGTTATTGTAT+AGG | - | chr5.1:10566940-10566959 | None:intergenic | 25.0% |
| !!! | CTTGAAAGTTTTTTTGTGAA+GGG | - | chr5.1:10567265-10567284 | None:intergenic | 25.0% |
| !!! | TCTTGAAAGTTTTTTTGTGA+AGG | - | chr5.1:10567266-10567285 | None:intergenic | 25.0% |
| ACAGAGAACAAATCTTTCAT+TGG | + | chr5.1:10567318-10567337 | MS.gene041145:intron | 30.0% | |
| AGCAATAATTTAGTACCTCT+TGG | - | chr5.1:10566061-10566080 | None:intergenic | 30.0% | |
| ATTGCAGTATCAACAAAGAT+TGG | + | chr5.1:10567881-10567900 | MS.gene041145:intron | 30.0% | |
| CACTAATAAACAAATAGGAG+TGG | + | chr5.1:10567474-10567493 | MS.gene041145:intron | 30.0% | |
| CATAATAACGTATGCATATG+TGG | + | chr5.1:10566178-10566197 | MS.gene041145:intron | 30.0% | |
| CCTTATTAAAGACATTGCAA+GGG | - | chr5.1:10568126-10568145 | None:intergenic | 30.0% | |
| GAGCTAAAAATTTAACTGCA+TGG | + | chr5.1:10566877-10566896 | MS.gene041145:intron | 30.0% | |
| GCGATCACTAATAAACAAAT+AGG | + | chr5.1:10567469-10567488 | MS.gene041145:intron | 30.0% | |
| GTAAGCTATATGAATACCTT+GGG | + | chr5.1:10566532-10566551 | MS.gene041145:intron | 30.0% | |
| TTTGCTGATCAAGAACTATT+AGG | + | chr5.1:10568158-10568177 | MS.gene041145:CDS | 30.0% | |
| ! | ATGTGAAAGCTTTAATAGCT+GGG | + | chr5.1:10566952-10566971 | MS.gene041145:intron | 30.0% |
| ! | GAACCATTTGGTTTATCATT+AGG | - | chr5.1:10567945-10567964 | None:intergenic | 30.0% |
| ! | TATGATCTTTTACCATCAAG+AGG | - | chr5.1:10566561-10566580 | None:intergenic | 30.0% |
| ! | TTTTTCATGTGTTTGGACTT+TGG | - | chr5.1:10567688-10567707 | None:intergenic | 30.0% |
| ! | TTTTTGACACAACCAGAATT+AGG | + | chr5.1:10567349-10567368 | MS.gene041145:intron | 30.0% |
| !!! | AGGTTTTTAAAGCCTAATTC+TGG | - | chr5.1:10567364-10567383 | None:intergenic | 30.0% |
| !!! | ATGTTTTAACACTGTCTTGT+TGG | - | chr5.1:10568244-10568263 | None:intergenic | 30.0% |
| AAGCATGATGCATACATATG+TGG | + | chr5.1:10566130-10566149 | MS.gene041145:intron | 35.0% | |
| AGATACGCAAAAAGCTCTTT+CGG | - | chr5.1:10568354-10568373 | None:intergenic | 35.0% | |
| AGCCCTAATGATAAACCAAA+TGG | + | chr5.1:10567939-10567958 | MS.gene041145:CDS | 35.0% | |
| AGTGTCACACAAAACAACTA+TGG | + | chr5.1:10568191-10568210 | MS.gene041145:CDS | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | - | chr5.1:10568297-10568316 | None:intergenic | 35.0% | |
| CATGAGACTAATTCTCGAAT+CGG | - | chr5.1:10566499-10566518 | None:intergenic | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | - | chr5.1:10567957-10567976 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | + | chr5.1:10567954-10567973 | MS.gene041145:CDS | 35.0% | |
| CCCTTGCAATGTCTTTAATA+AGG | + | chr5.1:10568123-10568142 | MS.gene041145:CDS | 35.0% | |
| CTCCGTAAGTATACAATCTT+TGG | + | chr5.1:10566724-10566743 | MS.gene041145:intron | 35.0% | |
| GGTAAGCTATATGAATACCT+TGG | + | chr5.1:10566531-10566550 | MS.gene041145:intron | 35.0% | |
| GTACTAGTAAGTTTCAAGAC+TGG | - | chr5.1:10567417-10567436 | None:intergenic | 35.0% | |
| TAAGTTTCAAGACTGGAGTT+GGG | - | chr5.1:10567410-10567429 | None:intergenic | 35.0% | |
| TATCATAAACCTCTATCGGT+CGG | - | chr5.1:10566357-10566376 | None:intergenic | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | - | chr5.1:10568296-10568315 | None:intergenic | 35.0% | |
| TGCGTATCTTCAAGAAATTG+CGG | + | chr5.1:10568365-10568384 | MS.gene041145:CDS | 35.0% | |
| ! | ATTCTGACCTGATTTGAAGT+TGG | - | chr5.1:10566389-10566408 | None:intergenic | 35.0% |
| ! | CATGTGAAAGCTTTAATAGC+TGG | + | chr5.1:10566951-10566970 | MS.gene041145:intron | 35.0% |
| ! | GCCTTATTAAAGACATTGCA+AGG | - | chr5.1:10568127-10568146 | None:intergenic | 35.0% |
| ! | TTCGAGAATTAGTCTCATGA+CGG | + | chr5.1:10566500-10566519 | MS.gene041145:intron | 35.0% |
| AACTTGGTTGCTAAGAACTG+TGG | - | chr5.1:10567981-10568000 | None:intergenic | 40.0% | |
| AAGAAGCTTAGATCAGGAGA+AGG | - | chr5.1:10566029-10566048 | None:intergenic | 40.0% | |
| ACAAAGATTGGATTCCAGCT+TGG | + | chr5.1:10567893-10567912 | MS.gene041145:CDS | 40.0% | |
| AGAGCAAAGAGTTATCCTAG+TGG | + | chr5.1:10565914-10565933 | MS.gene041145:CDS | 40.0% | |
| AGAGTCAAGAAGCTTAGATC+AGG | - | chr5.1:10566035-10566054 | None:intergenic | 40.0% | |
| AGGATAACTCTTTGCTCTTG+TGG | - | chr5.1:10565912-10565931 | None:intergenic | 40.0% | |
| ATTGCTCTGTTGAAATCTGC+TGG | + | chr5.1:10565771-10565790 | MS.gene041145:CDS | 40.0% | |
| CATAATCTTTGTGTCCAAGC+TGG | - | chr5.1:10567910-10567929 | None:intergenic | 40.0% | |
| CGTATCTTCAAGAAATTGCG+GGG | + | chr5.1:10568367-10568386 | MS.gene041145:CDS | 40.0% | |
| GAACTGTGGTCCAAATAACA+TGG | - | chr5.1:10567967-10567986 | None:intergenic | 40.0% | |
| GAGCAAAGAGTTATCCTAGT+GGG | + | chr5.1:10565915-10565934 | MS.gene041145:CDS | 40.0% | |
| GATTGTTGATGCTGATCACA+TGG | + | chr5.1:10568314-10568333 | MS.gene041145:CDS | 40.0% | |
| GCGTATCTTCAAGAAATTGC+GGG | + | chr5.1:10568366-10568385 | MS.gene041145:CDS | 40.0% | |
| GGAATAGGCTGTAGAGAATT+AGG | - | chr5.1:10567384-10567403 | None:intergenic | 40.0% | |
| GGATACAAGACATTTCGTGT+TGG | + | chr5.1:10565707-10565726 | MS.gene041145:CDS | 40.0% | |
| GTAAGTTTCAAGACTGGAGT+TGG | - | chr5.1:10567411-10567430 | None:intergenic | 40.0% | |
| GTATCTTCAAGAAATTGCGG+GGG | + | chr5.1:10568368-10568387 | MS.gene041145:CDS | 40.0% | |
| GTCTATGCCAACTTCAAATC+AGG | + | chr5.1:10566379-10566398 | MS.gene041145:intron | 40.0% | |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | - | chr5.1:10565987-10566006 | None:intergenic | 40.0% |
| ! | TGGAGACAGTTGATACAACT+TGG | - | chr5.1:10567997-10568016 | None:intergenic | 40.0% |
| !! | AGACATTTCGTGTTGGTTCA+TGG | + | chr5.1:10565714-10565733 | MS.gene041145:CDS | 40.0% |
| !! | AGTCTCATGACGGATACAAA+GGG | + | chr5.1:10566510-10566529 | MS.gene041145:intron | 40.0% |
| !! | TAGTCTCATGACGGATACAA+AGG | + | chr5.1:10566509-10566528 | MS.gene041145:intron | 40.0% |
| AGGTGGGATGTGTATATCTG+TGG | + | chr5.1:10565947-10565966 | MS.gene041145:CDS | 45.0% | |
| CGCAAAAAGCTCTTTCGGTT+TGG | - | chr5.1:10568349-10568368 | None:intergenic | 45.0% | |
| CTTCTTGACTCTTCTCCAAG+AGG | + | chr5.1:10566043-10566062 | MS.gene041145:CDS | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | + | chr5.1:10565953-10565972 | MS.gene041145:CDS | 45.0% | |
| TAAACCTCTATCGGTCGGTT+TGG | - | chr5.1:10566352-10566371 | None:intergenic | 45.0% | |
| TGATCAGCAAAGCTACGAAC+AGG | - | chr5.1:10568149-10568168 | None:intergenic | 45.0% | |
| TTAACCAAACCGACCGATAG+AGG | + | chr5.1:10566345-10566364 | MS.gene041145:intron | 45.0% | |
| TTCAAGACTGGAGTTGGGTT+GGG | - | chr5.1:10567405-10567424 | None:intergenic | 45.0% | |
| TTTCAAGACTGGAGTTGGGT+TGG | - | chr5.1:10567406-10567425 | None:intergenic | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | + | chr5.1:10565927-10565946 | MS.gene041145:CDS | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | + | chr5.1:10565931-10565950 | MS.gene041145:CDS | 45.0% |
| ! | TTGATTAGCCAGCATACCTC+AGG | - | chr5.1:10568020-10568039 | None:intergenic | 45.0% |
| !! | CTCTTTCGGTTTGGAGAACA+TGG | - | chr5.1:10568340-10568359 | None:intergenic | 45.0% |
| !!! | AAATATTTTTTTATCAAATT+TGG | + | chr5.1:10566789-10566808 | MS.gene041145:intron | 5.0% |
| !!! | AATTTGATAAAAAAATATTT+TGG | - | chr5.1:10566789-10566808 | None:intergenic | 5.0% |
| ACATTGCAAGGGACAAGTCC+TGG | - | chr5.1:10568115-10568134 | None:intergenic | 50.0% | |
| ATTAGCCAGCATACCTCAGG+TGG | - | chr5.1:10568017-10568036 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | - | chr5.1:10565932-10565951 | None:intergenic | 50.0% | |
| CGAAGTCACAACCCTAGACA+TGG | + | chr5.1:10565797-10565816 | MS.gene041145:CDS | 50.0% | |
| GTATCAACTGTCTCCACCTG+AGG | + | chr5.1:10568001-10568020 | MS.gene041145:CDS | 50.0% | |
| TACCTTGGGACACCTCTTGA+TGG | + | chr5.1:10566546-10566565 | MS.gene041145:intron | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | + | chr5.1:10565836-10565855 | MS.gene041145:CDS | 50.0% | |
| TCCAGAAGCAGCCATGTCTA+GGG | - | chr5.1:10565811-10565830 | None:intergenic | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | - | chr5.1:10565840-10565859 | None:intergenic | 50.0% | |
| TGGTTCATGGAGCTTGCCAT+GGG | + | chr5.1:10565727-10565746 | MS.gene041145:CDS | 50.0% | |
| TTCCAGAAGCAGCCATGTCT+AGG | - | chr5.1:10565812-10565831 | None:intergenic | 50.0% | |
| TTGGTTCATGGAGCTTGCCA+TGG | + | chr5.1:10565726-10565745 | MS.gene041145:CDS | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | + | chr5.1:10565930-10565949 | MS.gene041145:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | - | chr5.1:10565836-10565855 | None:intergenic | 50.0% |
| !! | ACTGGAGTTGGGTTGGGAAT+AGG | - | chr5.1:10567399-10567418 | None:intergenic | 50.0% |
| !! | TACCATCAAGAGGTGTCCCA+AGG | - | chr5.1:10566551-10566570 | None:intergenic | 50.0% |
| ACCCTAGACATGGCTGCTTC+TGG | + | chr5.1:10565807-10565826 | MS.gene041145:CDS | 55.0% | |
| GGTTCATGGAGCTTGCCATG+GGG | + | chr5.1:10565728-10565747 | MS.gene041145:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | - | chr5.1:10565746-10565765 | None:intergenic | 55.0% | |
| TGTCTCCACCTGAGGTATGC+TGG | + | chr5.1:10568009-10568028 | MS.gene041145:intron | 55.0% | |
| ATGGAGCTTGCCATGGGGCA+TGG | + | chr5.1:10565733-10565752 | MS.gene041145:CDS | 60.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | + | chr5.1:10565739-10565758 | MS.gene041145:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 10565705 | 10568401 | 10565705 | ID=MS.gene041145 |
| chr5.1 | mRNA | 10565705 | 10568401 | 10565705 | ID=MS.gene041145.t1;Parent=MS.gene041145 |
| chr5.1 | exon | 10565705 | 10566064 | 10565705 | ID=MS.gene041145.t1.exon1;Parent=MS.gene041145.t1 |
| chr5.1 | CDS | 10565705 | 10566064 | 10565705 | ID=cds.MS.gene041145.t1;Parent=MS.gene041145.t1 |
| chr5.1 | exon | 10567888 | 10568022 | 10567888 | ID=MS.gene041145.t1.exon2;Parent=MS.gene041145.t1 |
| chr5.1 | CDS | 10567888 | 10568022 | 10567888 | ID=cds.MS.gene041145.t1;Parent=MS.gene041145.t1 |
| chr5.1 | exon | 10568116 | 10568235 | 10568116 | ID=MS.gene041145.t1.exon3;Parent=MS.gene041145.t1 |
| chr5.1 | CDS | 10568116 | 10568235 | 10568116 | ID=cds.MS.gene041145.t1;Parent=MS.gene041145.t1 |
| chr5.1 | exon | 10568273 | 10568401 | 10568273 | ID=MS.gene041145.t1.exon4;Parent=MS.gene041145.t1 |
| chr5.1 | CDS | 10568273 | 10568401 | 10568273 | ID=cds.MS.gene041145.t1;Parent=MS.gene041145.t1 |
| Gene Sequence |
| Protein sequence |
