Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04148.t1 | XP_003600397.2 | 100 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04148.t1 | Q75LU8 | 91.6 | 226 | 18 | 1 | 1 | 226 | 1 | 225 | 3.9e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04148.t1 | G7IXS6 | 100.0 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04347 | MS.gene04148 | PPI |
| MS.gene81289 | MS.gene04148 | PPI |
| MS.gene05700 | MS.gene04148 | PPI |
| MS.gene04148 | MS.gene070285 | PPI |
| MS.gene04148 | MS.gene38263 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04148.t1 | MTR_3g060730 | 100.000 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 1.58e-167 | 461 |
| MS.gene04148.t1 | MTR_5g096420 | 93.363 | 226 | 15 | 0 | 1 | 226 | 1 | 226 | 2.89e-157 | 434 |
| MS.gene04148.t1 | MTR_4g134250 | 90.749 | 227 | 20 | 1 | 1 | 226 | 1 | 227 | 1.25e-151 | 420 |
| MS.gene04148.t1 | MTR_3g060730 | 100.000 | 184 | 0 | 0 | 43 | 226 | 5 | 188 | 6.71e-134 | 374 |
| MS.gene04148.t1 | MTR_2g027440 | 66.667 | 228 | 73 | 1 | 1 | 225 | 1 | 228 | 6.15e-113 | 323 |
| MS.gene04148.t1 | MTR_2g027480 | 66.228 | 228 | 74 | 1 | 1 | 225 | 1 | 228 | 1.29e-110 | 317 |
| MS.gene04148.t1 | MTR_2g027500 | 68.950 | 219 | 67 | 1 | 8 | 225 | 5 | 223 | 7.69e-110 | 315 |
| MS.gene04148.t1 | MTR_2g027520 | 64.069 | 231 | 78 | 1 | 1 | 226 | 1 | 231 | 2.91e-105 | 303 |
| MS.gene04148.t1 | MTR_3g091440 | 60.577 | 208 | 82 | 0 | 19 | 226 | 5 | 212 | 8.86e-94 | 274 |
| MS.gene04148.t1 | MTR_4g099210 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 9.44e-94 | 273 |
| MS.gene04148.t1 | MTR_1g016430 | 56.957 | 230 | 94 | 1 | 1 | 225 | 20 | 249 | 7.78e-88 | 260 |
| MS.gene04148.t1 | MTR_3g091440 | 62.500 | 184 | 69 | 0 | 43 | 226 | 30 | 213 | 1.39e-85 | 253 |
| MS.gene04148.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 1 | 180 | 2.96e-85 | 251 |
| MS.gene04148.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 99 | 278 | 7.24e-84 | 251 |
| MS.gene04148.t1 | MTR_8g099575 | 57.436 | 195 | 83 | 0 | 31 | 225 | 16 | 210 | 4.95e-81 | 241 |
| MS.gene04148.t1 | MTR_8g099570 | 57.143 | 196 | 84 | 0 | 31 | 226 | 58 | 253 | 2.82e-79 | 238 |
| MS.gene04148.t1 | MTR_8g016170 | 59.474 | 190 | 77 | 0 | 36 | 225 | 66 | 255 | 7.11e-77 | 232 |
| MS.gene04148.t1 | MTR_8g027620 | 55.612 | 196 | 87 | 0 | 31 | 226 | 39 | 234 | 3.20e-76 | 232 |
| MS.gene04148.t1 | MTR_5g013560 | 59.487 | 195 | 68 | 1 | 31 | 225 | 15 | 198 | 1.65e-73 | 222 |
| MS.gene04148.t1 | MTR_8g016170 | 59.538 | 173 | 70 | 0 | 36 | 208 | 47 | 219 | 1.11e-68 | 210 |
| MS.gene04148.t1 | MTR_3g091440 | 60.131 | 153 | 61 | 0 | 19 | 171 | 5 | 157 | 1.83e-64 | 198 |
| MS.gene04148.t1 | MTR_4g113505 | 48.370 | 184 | 95 | 0 | 42 | 225 | 6 | 189 | 2.90e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04148.t1 | AT4G26570 | 90.708 | 226 | 21 | 0 | 1 | 226 | 1 | 226 | 5.89e-151 | 419 |
| MS.gene04148.t1 | AT4G26570 | 89.130 | 230 | 21 | 1 | 1 | 226 | 1 | 230 | 6.66e-149 | 414 |
| MS.gene04148.t1 | AT5G55990 | 90.265 | 226 | 22 | 0 | 1 | 226 | 1 | 226 | 1.71e-148 | 412 |
| MS.gene04148.t1 | AT5G55990 | 90.265 | 226 | 22 | 0 | 1 | 226 | 1 | 226 | 1.71e-148 | 412 |
| MS.gene04148.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 7.36e-112 | 320 |
| MS.gene04148.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 7.36e-112 | 320 |
| MS.gene04148.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene04148.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene04148.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene04148.t1 | AT4G26560 | 70.312 | 192 | 44 | 2 | 48 | 226 | 23 | 214 | 2.16e-94 | 275 |
| MS.gene04148.t1 | AT5G47100 | 67.179 | 195 | 64 | 0 | 31 | 225 | 16 | 210 | 4.12e-94 | 275 |
| MS.gene04148.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene04148.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene04148.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene04148.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 31 | 246 | 6.15e-87 | 257 |
| MS.gene04148.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 41 | 256 | 8.92e-87 | 257 |
| MS.gene04148.t1 | AT4G17615 | 63.441 | 186 | 68 | 0 | 28 | 213 | 13 | 198 | 1.04e-82 | 247 |
| MS.gene04148.t1 | AT5G24270 | 62.570 | 179 | 67 | 0 | 40 | 218 | 4 | 182 | 2.79e-82 | 244 |
| MS.gene04148.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene04148.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene04148.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene04148.t1 | AT1G64480 | 52.792 | 197 | 93 | 0 | 12 | 208 | 1 | 197 | 1.34e-72 | 219 |
| MS.gene04148.t1 | AT4G17615 | 63.057 | 157 | 58 | 0 | 69 | 225 | 12 | 168 | 2.86e-71 | 215 |
| MS.gene04148.t1 | AT5G24270 | 59.740 | 154 | 62 | 0 | 65 | 218 | 7 | 160 | 6.88e-66 | 201 |
| MS.gene04148.t1 | AT5G47100 | 64.789 | 142 | 50 | 0 | 31 | 172 | 16 | 157 | 5.58e-63 | 194 |
| MS.gene04148.t1 | AT4G01420 | 49.741 | 193 | 97 | 0 | 26 | 218 | 10 | 202 | 1.12e-62 | 194 |
| MS.gene04148.t1 | AT4G01420 | 49.727 | 183 | 92 | 0 | 26 | 208 | 10 | 192 | 1.96e-58 | 183 |
| MS.gene04148.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.53e-57 | 181 |
| MS.gene04148.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.53e-57 | 181 |
| MS.gene04148.t1 | AT4G33000 | 59.006 | 161 | 65 | 1 | 11 | 170 | 31 | 191 | 2.63e-57 | 181 |
| MS.gene04148.t1 | AT4G33000 | 55.738 | 122 | 53 | 1 | 11 | 131 | 31 | 152 | 1.71e-36 | 126 |
Find 49 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGTTTGTTTGCTGATC+GGG | 0.319506 | 3.1:+45150466 | MS.gene04148:CDS |
| CCCTTCAAGTATCGTCTACT+TGG | 0.324835 | 3.1:-45152560 | None:intergenic |
| ATTCAATCTTATCATCAATA+GGG | 0.343925 | 3.1:-45151327 | None:intergenic |
| CATTCAATCTTATCATCAAT+AGG | 0.360435 | 3.1:-45151328 | None:intergenic |
| TTATCATCAATAGGGGCATT+TGG | 0.366158 | 3.1:-45151319 | None:intergenic |
| GTCTCCCTAGCAAGAAGTTC+AGG | 0.379316 | 3.1:-45149754 | None:intergenic |
| GTTGCTACACTTGCGGAGTC+TGG | 0.413717 | 3.1:+45151840 | MS.gene04148:CDS |
| TACCATGTTGCAGTGCTTAG+AGG | 0.427015 | 3.1:+45149654 | None:intergenic |
| CTTGCAGGAAGAATTTCAAT+TGG | 0.430829 | 3.1:+45150421 | MS.gene04148:intron |
| GATCTTCAAGGCCTCTTGAC+TGG | 0.445973 | 3.1:-45149732 | None:intergenic |
| ACAAAGCACAATGGGATACT+AGG | 0.447006 | 3.1:+45151259 | MS.gene04148:CDS |
| CAAGAAGTTCAGGATCTTCA+AGG | 0.447125 | 3.1:-45149744 | None:intergenic |
| CATCAATAGGGGCATTTGGA+TGG | 0.463572 | 3.1:-45151315 | None:intergenic |
| TGGGAATGGAATACAAAGCT+TGG | 0.469623 | 3.1:-45152540 | None:intergenic |
| TATTTGATACAAAGCACAAT+GGG | 0.478319 | 3.1:+45151251 | MS.gene04148:CDS |
| GGATTACTTGCAGACGTTTG+AGG | 0.490426 | 3.1:+45152004 | MS.gene04148:intron |
| CCCAAGTAGACGATACTTGA+AGG | 0.498461 | 3.1:+45152559 | MS.gene04148:CDS |
| AGTAGTGCTGTAATTGATGA+TGG | 0.499604 | 3.1:+45150156 | MS.gene04148:CDS |
| AAGAAAGTTTGTTTGCTGAT+CGG | 0.502858 | 3.1:+45150465 | MS.gene04148:CDS |
| AAGATCCTGAACTTCTTGCT+AGG | 0.502884 | 3.1:+45149749 | MS.gene04148:CDS |
| GGGAATGGAATACAAAGCTT+GGG | 0.521874 | 3.1:-45152539 | None:intergenic |
| ATTTGGATGGAAAACGGATA+GGG | 0.523943 | 3.1:-45151302 | None:intergenic |
| GAATTTACTTGAGATATTGA+AGG | 0.524603 | 3.1:-45152115 | None:intergenic |
| CATTTGGATGGAAAACGGAT+AGG | 0.526248 | 3.1:-45151303 | None:intergenic |
| ACCATGTTGCAGTGCTTAGA+GGG | 0.527412 | 3.1:+45149655 | None:intergenic |
| AAGTATCGTCTACTTGGGAA+TGG | 0.527759 | 3.1:-45152554 | None:intergenic |
| AGGGGCATTTGGATGGAAAA+CGG | 0.529208 | 3.1:-45151308 | None:intergenic |
| AATTTACTTGAGATATTGAA+GGG | 0.537206 | 3.1:-45152114 | None:intergenic |
| AGATCCTGAACTTCTTGCTA+GGG | 0.557142 | 3.1:+45149750 | MS.gene04148:CDS |
| TGATGATGGGTTGATTAACA+AGG | 0.559178 | 3.1:+45150170 | MS.gene04148:CDS |
| CTTGAGATCATATAGTTGAA+AGG | 0.560664 | 3.1:-45151691 | None:intergenic |
| GTGACGGATGCCGCAAAACA+AGG | 0.561848 | 3.1:-45152076 | None:intergenic |
| GATATAAATAACCAGTCAAG+AGG | 0.576093 | 3.1:+45149721 | MS.gene04148:CDS |
| TTCAATCTTATCATCAATAG+GGG | 0.577092 | 3.1:-45151326 | None:intergenic |
| CCTTCAAGTATCGTCTACTT+GGG | 0.585565 | 3.1:-45152559 | None:intergenic |
| GTCATGTTCTTCAATAGTGA+CGG | 0.592664 | 3.1:-45152092 | None:intergenic |
| GCAAGATTGACAAGGAGGAG+TGG | 0.614720 | 3.1:+45152048 | MS.gene04148:CDS |
| GGAGTCTGGTATGAATCTAT+CGG | 0.615262 | 3.1:+45151854 | MS.gene04148:CDS |
| TATACAGGTGAAACAAATGG+TGG | 0.623629 | 3.1:+45151818 | MS.gene04148:intron |
| TTATTTGATACAAAGCACAA+TGG | 0.632496 | 3.1:+45151250 | MS.gene04148:CDS |
| TACAAAGCTTGGGAACGTTG+TGG | 0.634535 | 3.1:-45152529 | None:intergenic |
| TCCCTCTAAGCACTGCAACA+TGG | 0.634698 | 3.1:-45149656 | None:intergenic |
| GAAGCAGATACAAAGCATGA+TGG | 0.634840 | 3.1:+45152026 | MS.gene04148:CDS |
| CTATATGATCTCAAGCAGCA+AGG | 0.650338 | 3.1:+45151699 | MS.gene04148:CDS |
| AATGGTGGTTGCTACACTTG+CGG | 0.655953 | 3.1:+45151833 | MS.gene04148:CDS |
| GTAGTGCTGTAATTGATGAT+GGG | 0.667152 | 3.1:+45150157 | MS.gene04148:CDS |
| GCATGATGGCAAGATTGACA+AGG | 0.674338 | 3.1:+45152040 | MS.gene04148:CDS |
| TGATGGCAAGATTGACAAGG+AGG | 0.679906 | 3.1:+45152043 | MS.gene04148:CDS |
| TATAGAAAGTATAATCGACA+AGG | 0.691619 | 3.1:+45151884 | MS.gene04148:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTTTAACATTAAATTT+TGG | + | chr3.1:45151983-45152002 | MS.gene04148:intron | 10.0% |
| !!! | ATGTTTTATTTTCTATTTTA+TGG | + | chr3.1:45150596-45150615 | MS.gene04148:intron | 10.0% |
| !!! | TGTTTTATTTTCTATTTTAT+GGG | + | chr3.1:45150597-45150616 | MS.gene04148:intron | 10.0% |
| !! | ACTAAAATTGAATATAACAT+CGG | - | chr3.1:45150395-45150414 | None:intergenic | 15.0% |
| !! | ATGAAAATCAATATAAGAAA+AGG | - | chr3.1:45152489-45152508 | None:intergenic | 15.0% |
| !! | GTATGTAATATTTATACTAT+AGG | + | chr3.1:45150058-45150077 | MS.gene04148:intron | 15.0% |
| !! | TAAATTAAAGAAGAGTTTAA+TGG | - | chr3.1:45151605-45151624 | None:intergenic | 15.0% |
| !! | TAAATTCTTTAATGAGAAAA+GGG | + | chr3.1:45151432-45151451 | MS.gene04148:intron | 15.0% |
| !! | TGAAAATCAATATAAGAAAA+GGG | - | chr3.1:45152488-45152507 | None:intergenic | 15.0% |
| !! | TTATATGAATTTCAACTAAT+AGG | + | chr3.1:45152296-45152315 | MS.gene04148:intron | 15.0% |
| !!! | AAAATCCAATTCTATTTTTT+TGG | + | chr3.1:45151757-45151776 | MS.gene04148:intron | 15.0% |
| !!! | GAAAACTTGTTAAAAAATTA+CGG | - | chr3.1:45152146-45152165 | None:intergenic | 15.0% |
| !! | AAATTCTTTAATGAGAAAAG+GGG | + | chr3.1:45151433-45151452 | MS.gene04148:intron | 20.0% |
| !! | AAGAAAAAAAGAAAACATGT+TGG | - | chr3.1:45152444-45152463 | None:intergenic | 20.0% |
| !! | AAGTAAATTTAACGCTATAT+TGG | - | chr3.1:45150627-45150646 | None:intergenic | 20.0% |
| !! | AATTTACTTGAGATATTGAA+GGG | - | chr3.1:45152117-45152136 | None:intergenic | 20.0% |
| !! | AGTAGAAATGATAATTAATC+CGG | - | chr3.1:45151124-45151143 | None:intergenic | 20.0% |
| !! | ATAGAATAAAGTAGCATTAA+CGG | - | chr3.1:45149790-45149809 | None:intergenic | 20.0% |
| !! | ATAGTAAACACTGTATATTA+AGG | - | chr3.1:45151032-45151051 | None:intergenic | 20.0% |
| !! | ATATAGCGTTAAATTTACTT+TGG | + | chr3.1:45150627-45150646 | MS.gene04148:intron | 20.0% |
| !! | ATTAAACATATTACAAGGAA+AGG | - | chr3.1:45151159-45151178 | None:intergenic | 20.0% |
| !! | ATTCAATCTTATCATCAATA+GGG | - | chr3.1:45151330-45151349 | None:intergenic | 20.0% |
| !! | CAATATTCTGTTGAATTTAA+AGG | + | chr3.1:45149924-45149943 | MS.gene04148:intron | 20.0% |
| !! | GTAAATTCTTTAATGAGAAA+AGG | + | chr3.1:45151431-45151450 | MS.gene04148:intron | 20.0% |
| !! | TAGTTTCATCATGTAAATTA+AGG | + | chr3.1:45150822-45150841 | MS.gene04148:intron | 20.0% |
| !! | TTCTCATTTATTTAAAGAGA+AGG | - | chr3.1:45151641-45151660 | None:intergenic | 20.0% |
| !!! | ATATTGATTTTCATGTGTTT+GGG | + | chr3.1:45152495-45152514 | MS.gene04148:intron | 20.0% |
| !!! | TATATTGATTTTCATGTGTT+TGG | + | chr3.1:45152494-45152513 | MS.gene04148:intron | 20.0% |
| !!! | TCATTTGAATTTTAACCAAT+AGG | - | chr3.1:45152224-45152243 | None:intergenic | 20.0% |
| ! | ACAAAACAGATAGAATAGAA+GGG | - | chr3.1:45150501-45150520 | None:intergenic | 25.0% |
| ! | AGTTACAAAATGAGTTTATG+TGG | + | chr3.1:45151534-45151553 | MS.gene04148:intron | 25.0% |
| ! | CATTCAATCTTATCATCAAT+AGG | - | chr3.1:45151331-45151350 | None:intergenic | 25.0% |
| ! | GAACTAGAACAAAAAAGAAA+TGG | + | chr3.1:45149966-45149985 | MS.gene04148:intron | 25.0% |
| ! | GAATTTACTTGAGATATTGA+AGG | - | chr3.1:45152118-45152137 | None:intergenic | 25.0% |
| ! | GATAAACAAAACATATGAAC+AGG | - | chr3.1:45151055-45151074 | None:intergenic | 25.0% |
| ! | GTTACAAAATGAGTTTATGT+GGG | + | chr3.1:45151535-45151554 | MS.gene04148:intron | 25.0% |
| ! | GTTAGATGACATCATATAAT+AGG | + | chr3.1:45150763-45150782 | MS.gene04148:intron | 25.0% |
| ! | TAAAAAGACAGACAAAAATC+AGG | - | chr3.1:45151800-45151819 | None:intergenic | 25.0% |
| ! | TAAGAACTAACATAATATCC+CGG | - | chr3.1:45150540-45150559 | None:intergenic | 25.0% |
| ! | TATTTGATACAAAGCACAAT+GGG | + | chr3.1:45151251-45151270 | MS.gene04148:CDS | 25.0% |
| ! | TCTTGAAAATATGTGTGTAA+AGG | - | chr3.1:45151085-45151104 | None:intergenic | 25.0% |
| ! | TTATTTGATACAAAGCACAA+TGG | + | chr3.1:45151250-45151269 | MS.gene04148:CDS | 25.0% |
| ! | TTCAATCTTATCATCAATAG+GGG | - | chr3.1:45151329-45151348 | None:intergenic | 25.0% |
| ! | TTTCAAGAAAAATCACTTTC+CGG | + | chr3.1:45151097-45151116 | MS.gene04148:intron | 25.0% |
| !! | ATGTTATTGTTTTCCTTCTT+TGG | + | chr3.1:45150343-45150362 | MS.gene04148:intron | 25.0% |
| !! | CACTTGACAAATATTTCTAA+AGG | - | chr3.1:45152416-45152435 | None:intergenic | 25.0% |
| !! | TATAGAAAGTATAATCGACA+AGG | + | chr3.1:45151884-45151903 | MS.gene04148:CDS | 25.0% |
| !! | TCTTTTATTGAAAACTCACT+TGG | + | chr3.1:45151960-45151979 | MS.gene04148:intron | 25.0% |
| !! | TTTTATACAGGTGAAACAAA+TGG | + | chr3.1:45151815-45151834 | MS.gene04148:intron | 25.0% |
| !! | TTTTGTCTGTCTTTTTATAC+AGG | + | chr3.1:45151803-45151822 | MS.gene04148:intron | 25.0% |
| !!! | ATTTCTAAAGGAGTGTTATT+TGG | - | chr3.1:45152404-45152423 | None:intergenic | 25.0% |
| !!! | GCGGACATAATTTATTTTTT+TGG | + | chr3.1:45152355-45152374 | MS.gene04148:intron | 25.0% |
| !!! | TTTCAAGTTAGTTAGTTTAC+CGG | + | chr3.1:45150787-45150806 | MS.gene04148:intron | 25.0% |
| !!! | TTTTGGAGTAATCTTCAAAA+CGG | + | chr3.1:45152372-45152391 | MS.gene04148:intron | 25.0% |
| AAATGATAATTAATCCGGTC+CGG | - | chr3.1:45151119-45151138 | None:intergenic | 30.0% | |
| AACAGTGGTGTGAAAAATAA+TGG | - | chr3.1:45150028-45150047 | None:intergenic | 30.0% | |
| AACTAAAACTCTTCCAAAGA+AGG | - | chr3.1:45150359-45150378 | None:intergenic | 30.0% | |
| ACTGAAATATGAAATTGCAG+CGG | - | chr3.1:45151669-45151688 | None:intergenic | 30.0% | |
| AGTTGTTCAATGACAAAAGA+AGG | - | chr3.1:45150200-45150219 | None:intergenic | 30.0% | |
| CACAAAACAGATAGAATAGA+AGG | - | chr3.1:45150502-45150521 | None:intergenic | 30.0% | |
| CATACTTATTTCGAAAACAG+TGG | - | chr3.1:45150043-45150062 | None:intergenic | 30.0% | |
| CCACATGGAATAATAAGAAT+CGG | - | chr3.1:45151184-45151203 | None:intergenic | 30.0% | |
| CGGTCATTAAACATATTACA+AGG | - | chr3.1:45151164-45151183 | None:intergenic | 30.0% | |
| CTTGAGATCATATAGTTGAA+AGG | - | chr3.1:45151694-45151713 | None:intergenic | 30.0% | |
| GAGAGCCAAAAAAATAGAAT+TGG | - | chr3.1:45151765-45151784 | None:intergenic | 30.0% | |
| GATATAAATAACCAGTCAAG+AGG | + | chr3.1:45149721-45149740 | MS.gene04148:CDS | 30.0% | |
| GGAATATCATGAGATTTCAT+TGG | + | chr3.1:45151556-45151575 | MS.gene04148:intron | 30.0% | |
| GTTAAATTTACTTTGGACAC+TGG | + | chr3.1:45150634-45150653 | MS.gene04148:intron | 30.0% | |
| TGTGCAAATATGTTTATCTC+CGG | + | chr3.1:45150518-45150537 | MS.gene04148:intron | 30.0% | |
| TTCTTATTATTCCATGTGGT+TGG | + | chr3.1:45151185-45151204 | MS.gene04148:intron | 30.0% | |
| ! | AAGAAAGTTTGTTTGCTGAT+CGG | + | chr3.1:45150465-45150484 | MS.gene04148:CDS | 30.0% |
| ! | AGCTTTTCTCTAACTCTATT+AGG | + | chr3.1:45151219-45151238 | MS.gene04148:intron | 30.0% |
| ! | GAAACTACACTAAATTTTGC+CGG | - | chr3.1:45150809-45150828 | None:intergenic | 30.0% |
| AGTAGTGCTGTAATTGATGA+TGG | + | chr3.1:45150156-45150175 | MS.gene04148:CDS | 35.0% | |
| ATCAGACACTTCATAGATGT+TGG | - | chr3.1:45149868-45149887 | None:intergenic | 35.0% | |
| ATTTGGATGGAAAACGGATA+GGG | - | chr3.1:45151305-45151324 | None:intergenic | 35.0% | |
| CCGATTCTTATTATTCCATG+TGG | + | chr3.1:45151181-45151200 | MS.gene04148:intron | 35.0% | |
| CTTAACACACTATCTCCTAT+TGG | + | chr3.1:45152206-45152225 | MS.gene04148:intron | 35.0% | |
| CTTGCAGGAAGAATTTCAAT+TGG | + | chr3.1:45150421-45150440 | MS.gene04148:intron | 35.0% | |
| GATCGAATTAAAGTGTGTTG+CGG | + | chr3.1:45152336-45152355 | MS.gene04148:intron | 35.0% | |
| GCATGATACAGTATTTCAGA+CGG | - | chr3.1:45149905-45149924 | None:intergenic | 35.0% | |
| GTCATGTTCTTCAATAGTGA+CGG | - | chr3.1:45152095-45152114 | None:intergenic | 35.0% | |
| GTCATTGAACAACTTATGCA+TGG | + | chr3.1:45150206-45150225 | MS.gene04148:intron | 35.0% | |
| GTGCAAATATGTTTATCTCC+GGG | + | chr3.1:45150519-45150538 | MS.gene04148:intron | 35.0% | |
| TACCTCTGGTAAATGTTTGT+AGG | + | chr3.1:45150728-45150747 | MS.gene04148:intron | 35.0% | |
| TATACAGGTGAAACAAATGG+TGG | + | chr3.1:45151818-45151837 | MS.gene04148:intron | 35.0% | |
| TTACTTTGGACACTGGTATA+TGG | + | chr3.1:45150641-45150660 | MS.gene04148:intron | 35.0% | |
| TTGAACAACTTATGCATGGT+TGG | + | chr3.1:45150210-45150229 | MS.gene04148:intron | 35.0% | |
| TTGTAGTAAATCGTGTATCG+CGG | + | chr3.1:45150938-45150957 | MS.gene04148:intron | 35.0% | |
| TTTGTTCAACTTTGTACCTC+TGG | + | chr3.1:45150714-45150733 | MS.gene04148:intron | 35.0% | |
| ! | AGAAAGTTTGTTTGCTGATC+GGG | + | chr3.1:45150466-45150485 | MS.gene04148:CDS | 35.0% |
| ! | GCAAAACTAGTTTACACTGA+CGG | - | chr3.1:45151466-45151485 | None:intergenic | 35.0% |
| ! | GTAGTGCTGTAATTGATGAT+GGG | + | chr3.1:45150157-45150176 | MS.gene04148:CDS | 35.0% |
| !! | AATTTTAGTGCTCATCTTGC+AGG | + | chr3.1:45150406-45150425 | MS.gene04148:intron | 35.0% |
| !! | TGATGATGGGTTGATTAACA+AGG | + | chr3.1:45150170-45150189 | MS.gene04148:CDS | 35.0% |
| !! | TTATCATCAATAGGGGCATT+TGG | - | chr3.1:45151322-45151341 | None:intergenic | 35.0% |
| !!! | AGCAGCAAGGTTTTATTGAA+AGG | + | chr3.1:45151712-45151731 | MS.gene04148:CDS | 35.0% |
| !!! | AGGTTTTATTGAAAGGCAAG+AGG | + | chr3.1:45151719-45151738 | MS.gene04148:CDS | 35.0% |
| !!! | AGTGTAAACTAGTTTTGCAC+TGG | + | chr3.1:45151468-45151487 | MS.gene04148:intron | 35.0% |
| AAGATCCTGAACTTCTTGCT+AGG | + | chr3.1:45149749-45149768 | MS.gene04148:CDS | 40.0% | |
| ACAAAGCACAATGGGATACT+AGG | + | chr3.1:45151259-45151278 | MS.gene04148:CDS | 40.0% | |
| ACCATCCCACCAAATTTAAG+TGG | - | chr3.1:45152276-45152295 | None:intergenic | 40.0% | |
| AGAAAAATCACTTTCCGGAC+CGG | + | chr3.1:45151102-45151121 | MS.gene04148:intron | 40.0% | |
| AGATCCTGAACTTCTTGCTA+GGG | + | chr3.1:45149750-45149769 | MS.gene04148:CDS | 40.0% | |
| AGCAGCTATAACAGTGCTAT+AGG | - | chr3.1:45150905-45150924 | None:intergenic | 40.0% | |
| AGTGCAAGTGACAGAAAAAC+AGG | - | chr3.1:45151916-45151935 | None:intergenic | 40.0% | |
| ATGACTCCCACTAAATCATG+TGG | + | chr3.1:45152240-45152259 | MS.gene04148:intron | 40.0% | |
| CAAGAAGTTCAGGATCTTCA+AGG | - | chr3.1:45149747-45149766 | None:intergenic | 40.0% | |
| CACCTACAAACATTTACCAG+AGG | - | chr3.1:45150733-45150752 | None:intergenic | 40.0% | |
| CATTTGGATGGAAAACGGAT+AGG | - | chr3.1:45151306-45151325 | None:intergenic | 40.0% | |
| CTATATGATCTCAAGCAGCA+AGG | + | chr3.1:45151699-45151718 | MS.gene04148:CDS | 40.0% | |
| GAAGCAGATACAAAGCATGA+TGG | + | chr3.1:45152026-45152045 | MS.gene04148:CDS | 40.0% | |
| GCAGCTATAACAGTGCTATA+GGG | - | chr3.1:45150904-45150923 | None:intergenic | 40.0% | |
| GGAGTCTGGTATGAATCTAT+CGG | + | chr3.1:45151854-45151873 | MS.gene04148:CDS | 40.0% | |
| GGGAATGGAATACAAAGCTT+GGG | - | chr3.1:45152542-45152561 | None:intergenic | 40.0% | |
| GTGCAAGTGACAGAAAAACA+GGG | - | chr3.1:45151915-45151934 | None:intergenic | 40.0% | |
| TAAAAATAACCGCGTAGTGC+TGG | - | chr3.1:45151508-45151527 | None:intergenic | 40.0% | |
| TAGCCAGTGTTGTCAAATAG+CGG | - | chr3.1:45151001-45151020 | None:intergenic | 40.0% | |
| TGACTCCCACTAAATCATGT+GGG | + | chr3.1:45152241-45152260 | MS.gene04148:intron | 40.0% | |
| TGGGAATGGAATACAAAGCT+TGG | - | chr3.1:45152543-45152562 | None:intergenic | 40.0% | |
| TTGCAGATCGCAGAAAATAG+TGG | + | chr3.1:45150866-45150885 | MS.gene04148:intron | 40.0% | |
| ! | AAGTATCGTCTACTTGGGAA+TGG | - | chr3.1:45152557-45152576 | None:intergenic | 40.0% |
| ! | ACCACTTAAATTTGGTGGGA+TGG | + | chr3.1:45152272-45152291 | MS.gene04148:intron | 40.0% |
| ! | GATTTTCATGTGTTTGGGCA+GGG | + | chr3.1:45152500-45152519 | MS.gene04148:intron | 40.0% |
| ! | TGATTTTCATGTGTTTGGGC+AGG | + | chr3.1:45152499-45152518 | MS.gene04148:intron | 40.0% |
| !!! | AGTGGAGAAACCTTGTTTTG+CGG | + | chr3.1:45152066-45152085 | MS.gene04148:CDS | 40.0% |
| AAATAGCGGCTGTAGCGAAA+CGG | - | chr3.1:45150987-45151006 | None:intergenic | 45.0% | |
| AATCAGAATCCAGCACTACG+CGG | + | chr3.1:45151496-45151515 | MS.gene04148:intron | 45.0% | |
| AATGGTGGTTGCTACACTTG+CGG | + | chr3.1:45151833-45151852 | MS.gene04148:CDS | 45.0% | |
| CACTAAATCATGTGGGCAGT+GGG | + | chr3.1:45152248-45152267 | MS.gene04148:intron | 45.0% | |
| CACTGCCCACATGATTTAGT+GGG | - | chr3.1:45152249-45152268 | None:intergenic | 45.0% | |
| CAGTGGGCACCACTTAAATT+TGG | + | chr3.1:45152264-45152283 | MS.gene04148:intron | 45.0% | |
| GCATGATGGCAAGATTGACA+AGG | + | chr3.1:45152040-45152059 | MS.gene04148:CDS | 45.0% | |
| GGATTACTTGCAGACGTTTG+AGG | + | chr3.1:45152004-45152023 | MS.gene04148:intron | 45.0% | |
| GGGCACCACTTAAATTTGGT+GGG | + | chr3.1:45152268-45152287 | MS.gene04148:intron | 45.0% | |
| TACAAAGCTTGGGAACGTTG+TGG | - | chr3.1:45152532-45152551 | None:intergenic | 45.0% | |
| TGATGGCAAGATTGACAAGG+AGG | + | chr3.1:45152043-45152062 | MS.gene04148:CDS | 45.0% | |
| TGGGCACCACTTAAATTTGG+TGG | + | chr3.1:45152267-45152286 | MS.gene04148:intron | 45.0% | |
| TTGGACACTGGTATATGGTG+TGG | + | chr3.1:45150646-45150665 | MS.gene04148:intron | 45.0% | |
| !! | AGGGGCATTTGGATGGAAAA+CGG | - | chr3.1:45151311-45151330 | None:intergenic | 45.0% |
| !! | CATCAATAGGGGCATTTGGA+TGG | - | chr3.1:45151318-45151337 | None:intergenic | 45.0% |
| CAGCCGCTATTTGACAACAC+TGG | + | chr3.1:45150995-45151014 | MS.gene04148:intron | 50.0% | |
| CCACTAAATCATGTGGGCAG+TGG | + | chr3.1:45152247-45152266 | MS.gene04148:intron | 50.0% | |
| CCACTGCCCACATGATTTAG+TGG | - | chr3.1:45152250-45152269 | None:intergenic | 50.0% | |
| CGAGTGAGATACCAACCACA+TGG | - | chr3.1:45151199-45151218 | None:intergenic | 50.0% | |
| GATCTTCAAGGCCTCTTGAC+TGG | - | chr3.1:45149735-45149754 | None:intergenic | 50.0% | |
| GCAAGATTGACAAGGAGGAG+TGG | + | chr3.1:45152048-45152067 | MS.gene04148:CDS | 50.0% | |
| GTCTCCCTAGCAAGAAGTTC+AGG | - | chr3.1:45149757-45149776 | None:intergenic | 50.0% | |
| ! | GCGTAGTGCTGGATTCTGAT+TGG | - | chr3.1:45151497-45151516 | None:intergenic | 50.0% |
| GTTGCTACACTTGCGGAGTC+TGG | + | chr3.1:45151840-45151859 | MS.gene04148:CDS | 55.0% | |
| !! | GTGACGGATGCCGCAAAACA+AGG | - | chr3.1:45152079-45152098 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 45149658 | 45152578 | 45149658 | ID=MS.gene04148 |
| chr3.1 | mRNA | 45149658 | 45152578 | 45149658 | ID=MS.gene04148.t1;Parent=MS.gene04148 |
| chr3.1 | exon | 45149658 | 45149781 | 45149658 | ID=MS.gene04148.t1.exon1;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45149658 | 45149781 | 45149658 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45150109 | 45150191 | 45150109 | ID=MS.gene04148.t1.exon2;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45150109 | 45150191 | 45150109 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45150428 | 45150487 | 45150428 | ID=MS.gene04148.t1.exon3;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45150428 | 45150487 | 45150428 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45151241 | 45151349 | 45151241 | ID=MS.gene04148.t1.exon4;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45151241 | 45151349 | 45151241 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45151688 | 45151740 | 45151688 | ID=MS.gene04148.t1.exon5;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45151688 | 45151740 | 45151688 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45151825 | 45151905 | 45151825 | ID=MS.gene04148.t1.exon6;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45151825 | 45151905 | 45151825 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45152017 | 45152129 | 45152017 | ID=MS.gene04148.t1.exon7;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45152017 | 45152129 | 45152017 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| chr3.1 | exon | 45152521 | 45152578 | 45152521 | ID=MS.gene04148.t1.exon8;Parent=MS.gene04148.t1 |
| chr3.1 | CDS | 45152521 | 45152578 | 45152521 | ID=cds.MS.gene04148.t1;Parent=MS.gene04148.t1 |
| Gene Sequence |
| Protein sequence |
