Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070285.t1 | XP_003600397.2 | 99.1 | 226 | 2 | 0 | 1 | 226 | 1 | 226 | 3.20E-120 | 441 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070285.t1 | Q75LU8 | 90.7 | 226 | 20 | 1 | 1 | 226 | 1 | 225 | 4.3e-113 | 408.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070285.t1 | G7IXS6 | 99.1 | 226 | 2 | 0 | 1 | 226 | 1 | 226 | 2.3e-120 | 441.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene070285 | 0.801025 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81289 | MS.gene070285 | PPI |
| MS.gene05700 | MS.gene070285 | PPI |
| MS.gene04148 | MS.gene070285 | PPI |
| MS.gene070285 | MS.gene38263 | PPI |
| MS.gene04347 | MS.gene070285 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070285.t1 | MTR_3g060730 | 99.115 | 226 | 2 | 0 | 1 | 226 | 1 | 226 | 5.90e-166 | 456 |
| MS.gene070285.t1 | MTR_5g096420 | 92.478 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 1.73e-155 | 430 |
| MS.gene070285.t1 | MTR_4g134250 | 89.868 | 227 | 22 | 1 | 1 | 226 | 1 | 227 | 6.95e-150 | 416 |
| MS.gene070285.t1 | MTR_3g060730 | 99.457 | 184 | 1 | 0 | 43 | 226 | 5 | 188 | 4.78e-133 | 372 |
| MS.gene070285.t1 | MTR_2g027440 | 67.105 | 228 | 72 | 1 | 1 | 225 | 1 | 228 | 1.67e-113 | 324 |
| MS.gene070285.t1 | MTR_2g027480 | 66.667 | 228 | 73 | 1 | 1 | 225 | 1 | 228 | 3.73e-111 | 318 |
| MS.gene070285.t1 | MTR_2g027500 | 69.406 | 219 | 66 | 1 | 8 | 225 | 5 | 223 | 1.98e-110 | 316 |
| MS.gene070285.t1 | MTR_2g027520 | 63.636 | 231 | 79 | 1 | 1 | 226 | 1 | 231 | 2.75e-104 | 301 |
| MS.gene070285.t1 | MTR_3g091440 | 61.058 | 208 | 81 | 0 | 19 | 226 | 5 | 212 | 2.02e-94 | 276 |
| MS.gene070285.t1 | MTR_4g099210 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 3.98e-94 | 274 |
| MS.gene070285.t1 | MTR_1g016430 | 56.522 | 230 | 95 | 1 | 1 | 225 | 20 | 249 | 7.55e-87 | 257 |
| MS.gene070285.t1 | MTR_3g091440 | 63.043 | 184 | 68 | 0 | 43 | 226 | 30 | 213 | 2.84e-86 | 255 |
| MS.gene070285.t1 | MTR_1g016430 | 66.111 | 180 | 61 | 0 | 43 | 222 | 1 | 180 | 2.10e-84 | 249 |
| MS.gene070285.t1 | MTR_1g016430 | 66.111 | 180 | 61 | 0 | 43 | 222 | 99 | 278 | 4.62e-83 | 249 |
| MS.gene070285.t1 | MTR_8g099575 | 57.436 | 195 | 83 | 0 | 31 | 225 | 16 | 210 | 8.09e-81 | 241 |
| MS.gene070285.t1 | MTR_8g099570 | 57.653 | 196 | 83 | 0 | 31 | 226 | 58 | 253 | 5.81e-80 | 240 |
| MS.gene070285.t1 | MTR_8g027620 | 55.612 | 196 | 87 | 0 | 31 | 226 | 39 | 234 | 4.24e-76 | 232 |
| MS.gene070285.t1 | MTR_8g016170 | 58.947 | 190 | 78 | 0 | 36 | 225 | 66 | 255 | 5.06e-76 | 230 |
| MS.gene070285.t1 | MTR_5g013560 | 60.000 | 195 | 67 | 1 | 31 | 225 | 15 | 198 | 2.75e-74 | 224 |
| MS.gene070285.t1 | MTR_8g016170 | 58.960 | 173 | 71 | 0 | 36 | 208 | 47 | 219 | 6.15e-68 | 208 |
| MS.gene070285.t1 | MTR_3g091440 | 60.131 | 153 | 61 | 0 | 19 | 171 | 5 | 157 | 1.91e-64 | 197 |
| MS.gene070285.t1 | MTR_4g113505 | 48.370 | 184 | 95 | 0 | 42 | 225 | 6 | 189 | 3.00e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070285.t1 | AT4G26570 | 89.823 | 226 | 23 | 0 | 1 | 226 | 1 | 226 | 2.13e-149 | 415 |
| MS.gene070285.t1 | AT4G26570 | 88.261 | 230 | 23 | 1 | 1 | 226 | 1 | 230 | 2.99e-147 | 409 |
| MS.gene070285.t1 | AT5G55990 | 89.381 | 226 | 24 | 0 | 1 | 226 | 1 | 226 | 1.42e-146 | 407 |
| MS.gene070285.t1 | AT5G55990 | 89.381 | 226 | 24 | 0 | 1 | 226 | 1 | 226 | 1.42e-146 | 407 |
| MS.gene070285.t1 | AT4G16350 | 70.354 | 226 | 60 | 2 | 1 | 226 | 2 | 220 | 2.73e-110 | 316 |
| MS.gene070285.t1 | AT4G16350 | 70.354 | 226 | 60 | 2 | 1 | 226 | 2 | 220 | 2.73e-110 | 316 |
| MS.gene070285.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 7.98e-95 | 276 |
| MS.gene070285.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 7.98e-95 | 276 |
| MS.gene070285.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 7.98e-95 | 276 |
| MS.gene070285.t1 | AT5G47100 | 67.179 | 195 | 64 | 0 | 31 | 225 | 16 | 210 | 4.65e-94 | 274 |
| MS.gene070285.t1 | AT4G26560 | 69.792 | 192 | 45 | 2 | 48 | 226 | 23 | 214 | 2.04e-93 | 273 |
| MS.gene070285.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.77e-88 | 259 |
| MS.gene070285.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.77e-88 | 259 |
| MS.gene070285.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.77e-88 | 259 |
| MS.gene070285.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 31 | 246 | 9.72e-87 | 257 |
| MS.gene070285.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 41 | 256 | 1.61e-86 | 257 |
| MS.gene070285.t1 | AT4G17615 | 63.441 | 186 | 68 | 0 | 28 | 213 | 13 | 198 | 1.15e-82 | 247 |
| MS.gene070285.t1 | AT5G24270 | 62.570 | 179 | 67 | 0 | 40 | 218 | 4 | 182 | 2.64e-82 | 244 |
| MS.gene070285.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 7.71e-80 | 238 |
| MS.gene070285.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 7.71e-80 | 238 |
| MS.gene070285.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 7.71e-80 | 238 |
| MS.gene070285.t1 | AT1G64480 | 52.792 | 197 | 93 | 0 | 12 | 208 | 1 | 197 | 2.35e-72 | 219 |
| MS.gene070285.t1 | AT4G17615 | 63.057 | 157 | 58 | 0 | 69 | 225 | 12 | 168 | 3.33e-71 | 215 |
| MS.gene070285.t1 | AT5G24270 | 59.740 | 154 | 62 | 0 | 65 | 218 | 7 | 160 | 5.59e-66 | 202 |
| MS.gene070285.t1 | AT5G47100 | 64.789 | 142 | 50 | 0 | 31 | 172 | 16 | 157 | 5.12e-63 | 194 |
| MS.gene070285.t1 | AT4G01420 | 49.741 | 193 | 97 | 0 | 26 | 218 | 10 | 202 | 8.17e-63 | 194 |
| MS.gene070285.t1 | AT4G01420 | 49.727 | 183 | 92 | 0 | 26 | 208 | 10 | 192 | 1.65e-58 | 183 |
| MS.gene070285.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.84e-57 | 181 |
| MS.gene070285.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.84e-57 | 181 |
| MS.gene070285.t1 | AT4G33000 | 59.006 | 161 | 65 | 1 | 11 | 170 | 31 | 191 | 2.97e-57 | 181 |
| MS.gene070285.t1 | AT4G33000 | 55.738 | 122 | 53 | 1 | 11 | 131 | 31 | 152 | 1.93e-36 | 125 |
Find 49 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGTTTGTTTGCTGATC+GGG | 0.319506 | 3.3:+48849478 | MS.gene070285:CDS |
| CCCTTCAAGTATCGTCTACT+TGG | 0.324835 | 3.3:-48851567 | None:intergenic |
| ATTCAATCTTATCATCAATA+GGG | 0.343925 | 3.3:-48850338 | None:intergenic |
| CATTCAATCTTATCATCAAT+AGG | 0.360435 | 3.3:-48850339 | None:intergenic |
| TTATCATCAATAGGGGCATT+TGG | 0.366158 | 3.3:-48850330 | None:intergenic |
| GTCTCCCTAGCAAGAAGTTC+AGG | 0.379316 | 3.3:-48848766 | None:intergenic |
| TACCATGTTGCATTGCTTAG+AGG | 0.394561 | 3.3:+48848666 | None:intergenic |
| GTTGCTACACTTGCGGAGTC+TGG | 0.413717 | 3.3:+48850852 | MS.gene070285:CDS |
| CTTGCAGGAAGAATTTCAAT+TGG | 0.430829 | 3.3:+48849433 | MS.gene070285:intron |
| GATCTTCAAGGCCTCTTGAC+TGG | 0.445973 | 3.3:-48848744 | None:intergenic |
| ACAAAGCACAATGGGATACT+AGG | 0.447006 | 3.3:+48850270 | MS.gene070285:CDS |
| CAAGAAGTTCAGGATCTTCA+AGG | 0.447125 | 3.3:-48848756 | None:intergenic |
| CATCAATAGGGGCATTTGGA+TGG | 0.463572 | 3.3:-48850326 | None:intergenic |
| TGGGAATGGAATACAAAGCT+TGG | 0.469623 | 3.3:-48851547 | None:intergenic |
| TATTTGATACAAAGCACAAT+GGG | 0.478319 | 3.3:+48850262 | MS.gene070285:CDS |
| ACCATGTTGCATTGCTTAGA+GGG | 0.490298 | 3.3:+48848667 | None:intergenic |
| GGATTACTTGCAGACGTTTG+AGG | 0.490426 | 3.3:+48851016 | MS.gene070285:intron |
| CCCAAGTAGACGATACTTGA+AGG | 0.498461 | 3.3:+48851566 | MS.gene070285:CDS |
| AGTAGTGCTGTAATTGATGA+TGG | 0.499604 | 3.3:+48849168 | MS.gene070285:CDS |
| AAGAAAGTTTGTTTGCTGAT+CGG | 0.502858 | 3.3:+48849477 | MS.gene070285:CDS |
| AAGATCCTGAACTTCTTGCT+AGG | 0.502884 | 3.3:+48848761 | MS.gene070285:CDS |
| GGGAATGGAATACAAAGCTT+GGG | 0.509455 | 3.3:-48851546 | None:intergenic |
| ATTTGGATGGAAAACGGATA+GGG | 0.523943 | 3.3:-48850313 | None:intergenic |
| GAATTTACTTGAGATATTGA+AGG | 0.524603 | 3.3:-48851127 | None:intergenic |
| CATTTGGATGGAAAACGGAT+AGG | 0.526248 | 3.3:-48850314 | None:intergenic |
| AAGTATCGTCTACTTGGGAA+TGG | 0.527759 | 3.3:-48851561 | None:intergenic |
| AGGGGCATTTGGATGGAAAA+CGG | 0.529208 | 3.3:-48850319 | None:intergenic |
| AATTTACTTGAGATATTGAA+GGG | 0.537206 | 3.3:-48851126 | None:intergenic |
| AGATCCTGAACTTCTTGCTA+GGG | 0.557142 | 3.3:+48848762 | MS.gene070285:CDS |
| TGATGATGGGTTGATTAACA+AGG | 0.559178 | 3.3:+48849182 | MS.gene070285:CDS |
| CTTGAGATCATATAGTTGAA+AGG | 0.560664 | 3.3:-48850703 | None:intergenic |
| GTGACGGATGCTGCAAAACA+AGG | 0.572639 | 3.3:-48851088 | None:intergenic |
| GATATAAATAACCAGTCAAG+AGG | 0.576093 | 3.3:+48848733 | MS.gene070285:CDS |
| TTCAATCTTATCATCAATAG+GGG | 0.577092 | 3.3:-48850337 | None:intergenic |
| CCTTCAAGTATCGTCTACTT+GGG | 0.585565 | 3.3:-48851566 | None:intergenic |
| GTCATGTTCTTCAAAAGTGA+CGG | 0.587926 | 3.3:-48851104 | None:intergenic |
| GCAAGATTGACAAGGAGGAG+TGG | 0.614720 | 3.3:+48851060 | MS.gene070285:CDS |
| GGAGTCTGGTATGAATCTAT+CGG | 0.615262 | 3.3:+48850866 | MS.gene070285:CDS |
| TATACAGGTGAAACAAATGG+TGG | 0.623629 | 3.3:+48850830 | MS.gene070285:intron |
| TTATTTGATACAAAGCACAA+TGG | 0.632496 | 3.3:+48850261 | MS.gene070285:CDS |
| GAAGCAGATACAAAGCATGA+TGG | 0.634840 | 3.3:+48851038 | MS.gene070285:CDS |
| TCCCTCTAAGCAATGCAACA+TGG | 0.641830 | 3.3:-48848668 | None:intergenic |
| CTATATGATCTCAAGCAGCA+AGG | 0.650338 | 3.3:+48850711 | MS.gene070285:CDS |
| AATGGTGGTTGCTACACTTG+CGG | 0.655953 | 3.3:+48850845 | MS.gene070285:CDS |
| GTAGTGCTGTAATTGATGAT+GGG | 0.667152 | 3.3:+48849169 | MS.gene070285:CDS |
| TACAAAGCTTGGGAATGTTG+TGG | 0.667515 | 3.3:-48851536 | None:intergenic |
| GCATGATGGCAAGATTGACA+AGG | 0.674338 | 3.3:+48851052 | MS.gene070285:CDS |
| TGATGGCAAGATTGACAAGG+AGG | 0.679906 | 3.3:+48851055 | MS.gene070285:CDS |
| TATAGAAAGTATAATCGACA+AGG | 0.691619 | 3.3:+48850896 | MS.gene070285:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTTTAACATTAAATTT+TGG | + | chr3.3:48850995-48851014 | MS.gene070285:intron | 10.0% |
| !!! | ATGTTTTATTTTCTATTTTA+TGG | + | chr3.3:48849608-48849627 | MS.gene070285:intron | 10.0% |
| !!! | TGTTTTATTTTCTATTTTAT+GGG | + | chr3.3:48849609-48849628 | MS.gene070285:intron | 10.0% |
| !! | AAAATAGAAAAAAAAGATGT+TGG | - | chr3.3:48851455-48851474 | None:intergenic | 15.0% |
| !! | ACTAAAATTGAATATAACAT+CGG | - | chr3.3:48849407-48849426 | None:intergenic | 15.0% |
| !! | ATGAAAATCAATATAAGAAA+AGG | - | chr3.3:48851496-48851515 | None:intergenic | 15.0% |
| !! | CAATATTCTATTGAATTTAA+AGG | + | chr3.3:48848936-48848955 | MS.gene070285:intron | 15.0% |
| !! | GAAAAGTTGTTAAAAAATTA+CGG | - | chr3.3:48851158-48851177 | None:intergenic | 15.0% |
| !! | GTATGTAATATTTATACTAT+AGG | + | chr3.3:48849070-48849089 | MS.gene070285:intron | 15.0% |
| !! | TAAATTAAAGAAGAGTTTAA+TGG | - | chr3.3:48850617-48850636 | None:intergenic | 15.0% |
| !! | TAAATTCTTTAATGAGAAAA+GGG | + | chr3.3:48850444-48850463 | MS.gene070285:intron | 15.0% |
| !! | TGAAAATCAATATAAGAAAA+GGG | - | chr3.3:48851495-48851514 | None:intergenic | 15.0% |
| !! | TTATATGAATTTCAACTAAT+AGG | + | chr3.3:48851308-48851327 | MS.gene070285:intron | 15.0% |
| !!! | AAAATCCAATTCTATTTTTT+TGG | + | chr3.3:48850769-48850788 | MS.gene070285:intron | 15.0% |
| !! | AAATTCTTTAATGAGAAAAG+GGG | + | chr3.3:48850445-48850464 | MS.gene070285:intron | 20.0% |
| !! | AATTTACTTGAGATATTGAA+GGG | - | chr3.3:48851129-48851148 | None:intergenic | 20.0% |
| !! | AGTAGAAATGATAATTAATC+CGG | - | chr3.3:48850135-48850154 | None:intergenic | 20.0% |
| !! | ATAGAATAAAGTAGCATTAA+CGG | - | chr3.3:48848802-48848821 | None:intergenic | 20.0% |
| !! | ATAGTAAACACTGTATATTA+AGG | - | chr3.3:48850043-48850062 | None:intergenic | 20.0% |
| !! | ATTAAACATATTACAAGGAA+AGG | - | chr3.3:48850170-48850189 | None:intergenic | 20.0% |
| !! | ATTCAATCTTATCATCAATA+GGG | - | chr3.3:48850341-48850360 | None:intergenic | 20.0% |
| !! | GTAAATTCTTTAATGAGAAA+AGG | + | chr3.3:48850443-48850462 | MS.gene070285:intron | 20.0% |
| !! | TAGTTTCATCATGTAAATTA+AGG | + | chr3.3:48849833-48849852 | MS.gene070285:intron | 20.0% |
| !! | TTCTCATTTATTTAAAGAGA+AGG | - | chr3.3:48850653-48850672 | None:intergenic | 20.0% |
| !!! | ATATTGATTTTCATGTGTTT+GGG | + | chr3.3:48851502-48851521 | MS.gene070285:intron | 20.0% |
| !!! | TATATTGATTTTCATGTGTT+TGG | + | chr3.3:48851501-48851520 | MS.gene070285:intron | 20.0% |
| !!! | TCATTTGAATTTTAACCAAT+AGG | - | chr3.3:48851236-48851255 | None:intergenic | 20.0% |
| !!! | TTTAAAGTTAGTTAGTTTAC+CGG | + | chr3.3:48849799-48849818 | MS.gene070285:intron | 20.0% |
| ! | AAGTAAATTTAACGCTATGT+TGG | - | chr3.3:48849639-48849658 | None:intergenic | 25.0% |
| ! | ACAAAACAGATAGAATAGAA+GGG | - | chr3.3:48849513-48849532 | None:intergenic | 25.0% |
| ! | ACATAGCGTTAAATTTACTT+TGG | + | chr3.3:48849639-48849658 | MS.gene070285:intron | 25.0% |
| ! | AGTTACAAAATGAGTTTATG+TGG | + | chr3.3:48850546-48850565 | MS.gene070285:intron | 25.0% |
| ! | CATTCAATCTTATCATCAAT+AGG | - | chr3.3:48850342-48850361 | None:intergenic | 25.0% |
| ! | GAACTAGAACAAAAAAGAAA+TGG | + | chr3.3:48848978-48848997 | MS.gene070285:intron | 25.0% |
| ! | GAATTTACTTGAGATATTGA+AGG | - | chr3.3:48851130-48851149 | None:intergenic | 25.0% |
| ! | GATAAACAAAACATATGAAC+AGG | - | chr3.3:48850066-48850085 | None:intergenic | 25.0% |
| ! | GTTAGATGACATCATATAAT+AGG | + | chr3.3:48849775-48849794 | MS.gene070285:intron | 25.0% |
| ! | TAAAAAGACAGACAAAAATC+AGG | - | chr3.3:48850812-48850831 | None:intergenic | 25.0% |
| ! | TAAGAACTAACATAATATCC+CGG | - | chr3.3:48849552-48849571 | None:intergenic | 25.0% |
| ! | TATTTGATACAAAGCACAAT+GGG | + | chr3.3:48850262-48850281 | MS.gene070285:CDS | 25.0% |
| ! | TCTTGAAAATATGTGTGTAA+AGG | - | chr3.3:48850096-48850115 | None:intergenic | 25.0% |
| ! | TTATTTGATACAAAGCACAA+TGG | + | chr3.3:48850261-48850280 | MS.gene070285:CDS | 25.0% |
| ! | TTCAATCTTATCATCAATAG+GGG | - | chr3.3:48850340-48850359 | None:intergenic | 25.0% |
| ! | TTTCAAGAAAAATCACTTTC+CGG | + | chr3.3:48850108-48850127 | MS.gene070285:intron | 25.0% |
| !! | ATGTTATTGTTTTCCTTCTT+TGG | + | chr3.3:48849355-48849374 | MS.gene070285:intron | 25.0% |
| !! | CACTTGACAAATATTTCTAA+AGG | - | chr3.3:48851427-48851446 | None:intergenic | 25.0% |
| !! | TATAGAAAGTATAATCGACA+AGG | + | chr3.3:48850896-48850915 | MS.gene070285:CDS | 25.0% |
| !! | TCTTTTATTGAAAACTCACT+TGG | + | chr3.3:48850972-48850991 | MS.gene070285:intron | 25.0% |
| !! | TTTTATACAGGTGAAACAAA+TGG | + | chr3.3:48850827-48850846 | MS.gene070285:intron | 25.0% |
| !! | TTTTGTCTGTCTTTTTATAC+AGG | + | chr3.3:48850815-48850834 | MS.gene070285:intron | 25.0% |
| !!! | ATTTCTAAAGGAGTGTTATT+TGG | - | chr3.3:48851415-48851434 | None:intergenic | 25.0% |
| !!! | TGCGGACATAATTATTTTTT+TGG | + | chr3.3:48851366-48851385 | MS.gene070285:intron | 25.0% |
| !!! | TTTTGGAGTAATCTTCAAAA+CGG | + | chr3.3:48851383-48851402 | MS.gene070285:intron | 25.0% |
| AAATGATAATTAATCCGGTC+CGG | - | chr3.3:48850130-48850149 | None:intergenic | 30.0% | |
| AACAGTGGTGTGAAAAATAA+TGG | - | chr3.3:48849040-48849059 | None:intergenic | 30.0% | |
| AACTAAAACTCTTCCAAAGA+AGG | - | chr3.3:48849371-48849390 | None:intergenic | 30.0% | |
| ACTGAAATATGAAATTGCAG+CGG | - | chr3.3:48850681-48850700 | None:intergenic | 30.0% | |
| AGTTGTTCAATGACAAAAGA+AGG | - | chr3.3:48849212-48849231 | None:intergenic | 30.0% | |
| CACAAAACAGATAGAATAGA+AGG | - | chr3.3:48849514-48849533 | None:intergenic | 30.0% | |
| CATACTTATTTCGAAAACAG+TGG | - | chr3.3:48849055-48849074 | None:intergenic | 30.0% | |
| CCACATGGAATAATAAGAAT+CGG | - | chr3.3:48850195-48850214 | None:intergenic | 30.0% | |
| CGGTCATTAAACATATTACA+AGG | - | chr3.3:48850175-48850194 | None:intergenic | 30.0% | |
| CTTGAGATCATATAGTTGAA+AGG | - | chr3.3:48850706-48850725 | None:intergenic | 30.0% | |
| GAGAGCCAAAAAAATAGAAT+TGG | - | chr3.3:48850777-48850796 | None:intergenic | 30.0% | |
| GATATAAATAACCAGTCAAG+AGG | + | chr3.3:48848733-48848752 | MS.gene070285:CDS | 30.0% | |
| GCAAAACTAATTTACACTGA+CGG | - | chr3.3:48850478-48850497 | None:intergenic | 30.0% | |
| GCAATATCATGAGATTTCAT+TGG | + | chr3.3:48850568-48850587 | MS.gene070285:intron | 30.0% | |
| GTTAAATTTACTTTGGACAC+TGG | + | chr3.3:48849646-48849665 | MS.gene070285:intron | 30.0% | |
| TGTGCAAATATGTTTATCTC+CGG | + | chr3.3:48849530-48849549 | MS.gene070285:intron | 30.0% | |
| TTCTTATTATTCCATGTGGT+TGG | + | chr3.3:48850196-48850215 | MS.gene070285:intron | 30.0% | |
| ! | AAGAAAGTTTGTTTGCTGAT+CGG | + | chr3.3:48849477-48849496 | MS.gene070285:CDS | 30.0% |
| ! | AGCTTTTCTCTAACTCTATT+AGG | + | chr3.3:48850230-48850249 | MS.gene070285:intron | 30.0% |
| ! | TGAAACTACACTAATTTTGC+CGG | - | chr3.3:48849821-48849840 | None:intergenic | 30.0% |
| !!! | AGTGTAAATTAGTTTTGCAC+TGG | + | chr3.3:48850480-48850499 | MS.gene070285:intron | 30.0% |
| AGTAGTGCTGTAATTGATGA+TGG | + | chr3.3:48849168-48849187 | MS.gene070285:CDS | 35.0% | |
| ATCAGACACTTCATAGATGT+TGG | - | chr3.3:48848880-48848899 | None:intergenic | 35.0% | |
| ATTTGGATGGAAAACGGATA+GGG | - | chr3.3:48850316-48850335 | None:intergenic | 35.0% | |
| CCGATTCTTATTATTCCATG+TGG | + | chr3.3:48850192-48850211 | MS.gene070285:intron | 35.0% | |
| CTTAACACACTATCTCCTAT+TGG | + | chr3.3:48851218-48851237 | MS.gene070285:intron | 35.0% | |
| CTTGCAGGAAGAATTTCAAT+TGG | + | chr3.3:48849433-48849452 | MS.gene070285:intron | 35.0% | |
| GATCGAATTAAAGTGTGTTG+CGG | + | chr3.3:48851348-48851367 | MS.gene070285:intron | 35.0% | |
| GCATGATACAGTATTTCAGA+CGG | - | chr3.3:48848917-48848936 | None:intergenic | 35.0% | |
| GTCATGTTCTTCAAAAGTGA+CGG | - | chr3.3:48851107-48851126 | None:intergenic | 35.0% | |
| GTCATTGAACAACTTATGCA+TGG | + | chr3.3:48849218-48849237 | MS.gene070285:intron | 35.0% | |
| GTGCAAATATGTTTATCTCC+GGG | + | chr3.3:48849531-48849550 | MS.gene070285:intron | 35.0% | |
| TACCTCTGGTAAATGTTTGT+AGG | + | chr3.3:48849740-48849759 | MS.gene070285:intron | 35.0% | |
| TATACAGGTGAAACAAATGG+TGG | + | chr3.3:48850830-48850849 | MS.gene070285:intron | 35.0% | |
| TTACTTTGGACACTGGTATA+TGG | + | chr3.3:48849653-48849672 | MS.gene070285:intron | 35.0% | |
| TTGAACAACTTATGCATGGT+TGG | + | chr3.3:48849222-48849241 | MS.gene070285:intron | 35.0% | |
| TTTGTTCAACTTTGTACCTC+TGG | + | chr3.3:48849726-48849745 | MS.gene070285:intron | 35.0% | |
| ! | AGAAAGTTTGTTTGCTGATC+GGG | + | chr3.3:48849478-48849497 | MS.gene070285:CDS | 35.0% |
| ! | GTAGTGCTGTAATTGATGAT+GGG | + | chr3.3:48849169-48849188 | MS.gene070285:CDS | 35.0% |
| !! | AATTTTAGTGCTCATCTTGC+AGG | + | chr3.3:48849418-48849437 | MS.gene070285:intron | 35.0% |
| !! | ATAAGAAAAGGGCTAGTCAA+AGG | - | chr3.3:48851484-48851503 | None:intergenic | 35.0% |
| !! | TGATGATGGGTTGATTAACA+AGG | + | chr3.3:48849182-48849201 | MS.gene070285:CDS | 35.0% |
| !! | TTATCATCAATAGGGGCATT+TGG | - | chr3.3:48850333-48850352 | None:intergenic | 35.0% |
| !!! | AGCAGCAAGGTTTTATTGAA+AGG | + | chr3.3:48850724-48850743 | MS.gene070285:CDS | 35.0% |
| !!! | AGGTTTTATTGAAAGGCAAG+AGG | + | chr3.3:48850731-48850750 | MS.gene070285:CDS | 35.0% |
| AAGATCCTGAACTTCTTGCT+AGG | + | chr3.3:48848761-48848780 | MS.gene070285:CDS | 40.0% | |
| ACAAAGCACAATGGGATACT+AGG | + | chr3.3:48850270-48850289 | MS.gene070285:CDS | 40.0% | |
| ACCATCCCACCAAATTTAAG+TGG | - | chr3.3:48851288-48851307 | None:intergenic | 40.0% | |
| AGAAAAATCACTTTCCGGAC+CGG | + | chr3.3:48850113-48850132 | MS.gene070285:intron | 40.0% | |
| AGATCCTGAACTTCTTGCTA+GGG | + | chr3.3:48848762-48848781 | MS.gene070285:CDS | 40.0% | |
| AGCAGCTATAACAGTGCTAT+AGG | - | chr3.3:48849916-48849935 | None:intergenic | 40.0% | |
| AGTGCAAGTGACAGAAAAAC+AGG | - | chr3.3:48850928-48850947 | None:intergenic | 40.0% | |
| ATGACTCCCACTAAATCATG+TGG | + | chr3.3:48851252-48851271 | MS.gene070285:intron | 40.0% | |
| CAAGAAGTTCAGGATCTTCA+AGG | - | chr3.3:48848759-48848778 | None:intergenic | 40.0% | |
| CACCTACAAACATTTACCAG+AGG | - | chr3.3:48849745-48849764 | None:intergenic | 40.0% | |
| CATTTGGATGGAAAACGGAT+AGG | - | chr3.3:48850317-48850336 | None:intergenic | 40.0% | |
| CTATATGATCTCAAGCAGCA+AGG | + | chr3.3:48850711-48850730 | MS.gene070285:CDS | 40.0% | |
| GAAGCAGATACAAAGCATGA+TGG | + | chr3.3:48851038-48851057 | MS.gene070285:CDS | 40.0% | |
| GCAGCTATAACAGTGCTATA+GGG | - | chr3.3:48849915-48849934 | None:intergenic | 40.0% | |
| GGAGTCTGGTATGAATCTAT+CGG | + | chr3.3:48850866-48850885 | MS.gene070285:CDS | 40.0% | |
| GGGAATGGAATACAAAGCTT+GGG | - | chr3.3:48851549-48851568 | None:intergenic | 40.0% | |
| GTGCAAGTGACAGAAAAACA+GGG | - | chr3.3:48850927-48850946 | None:intergenic | 40.0% | |
| TAAAAATAACCGCGTAGTGC+TGG | - | chr3.3:48850520-48850539 | None:intergenic | 40.0% | |
| TACAAAGCTTGGGAATGTTG+TGG | - | chr3.3:48851539-48851558 | None:intergenic | 40.0% | |
| TAGCCAGTGTTGTCAAATAG+CGG | - | chr3.3:48850012-48850031 | None:intergenic | 40.0% | |
| TGACTCCCACTAAATCATGT+GGG | + | chr3.3:48851253-48851272 | MS.gene070285:intron | 40.0% | |
| TGGGAATGGAATACAAAGCT+TGG | - | chr3.3:48851550-48851569 | None:intergenic | 40.0% | |
| TTGCAGATCGCAGAAAATAG+TGG | + | chr3.3:48849877-48849896 | MS.gene070285:intron | 40.0% | |
| ! | AAGTATCGTCTACTTGGGAA+TGG | - | chr3.3:48851564-48851583 | None:intergenic | 40.0% |
| ! | ACCACTTAAATTTGGTGGGA+TGG | + | chr3.3:48851284-48851303 | MS.gene070285:intron | 40.0% |
| ! | GATTTTCATGTGTTTGGGCA+GGG | + | chr3.3:48851507-48851526 | MS.gene070285:intron | 40.0% |
| ! | TGATTTTCATGTGTTTGGGC+AGG | + | chr3.3:48851506-48851525 | MS.gene070285:intron | 40.0% |
| AAATAGCGGCTGTAGCGAAA+CGG | - | chr3.3:48849998-48850017 | None:intergenic | 45.0% | |
| AATCAGAATCCAGCACTACG+CGG | + | chr3.3:48850508-48850527 | MS.gene070285:intron | 45.0% | |
| AATGGTGGTTGCTACACTTG+CGG | + | chr3.3:48850845-48850864 | MS.gene070285:CDS | 45.0% | |
| CACTAAATCATGTGGGCAGT+GGG | + | chr3.3:48851260-48851279 | MS.gene070285:intron | 45.0% | |
| CACTGCCCACATGATTTAGT+GGG | - | chr3.3:48851261-48851280 | None:intergenic | 45.0% | |
| CAGTGGGCACCACTTAAATT+TGG | + | chr3.3:48851276-48851295 | MS.gene070285:intron | 45.0% | |
| GCATGATGGCAAGATTGACA+AGG | + | chr3.3:48851052-48851071 | MS.gene070285:CDS | 45.0% | |
| GGATTACTTGCAGACGTTTG+AGG | + | chr3.3:48851016-48851035 | MS.gene070285:intron | 45.0% | |
| GGGCACCACTTAAATTTGGT+GGG | + | chr3.3:48851280-48851299 | MS.gene070285:intron | 45.0% | |
| TGATGGCAAGATTGACAAGG+AGG | + | chr3.3:48851055-48851074 | MS.gene070285:CDS | 45.0% | |
| TGGGCACCACTTAAATTTGG+TGG | + | chr3.3:48851279-48851298 | MS.gene070285:intron | 45.0% | |
| TTGGACACTGGTATATGGTG+TGG | + | chr3.3:48849658-48849677 | MS.gene070285:intron | 45.0% | |
| !! | AGGGGCATTTGGATGGAAAA+CGG | - | chr3.3:48850322-48850341 | None:intergenic | 45.0% |
| !! | CATCAATAGGGGCATTTGGA+TGG | - | chr3.3:48850329-48850348 | None:intergenic | 45.0% |
| !!! | ATATTTTTCTTTTATTATTT+TGG | + | chr3.3:48850370-48850389 | MS.gene070285:intron | 5.0% |
| !!! | TATTTTTCTTTTATTATTTT+GGG | + | chr3.3:48850371-48850390 | MS.gene070285:intron | 5.0% |
| CAGCCGCTATTTGACAACAC+TGG | + | chr3.3:48850006-48850025 | MS.gene070285:intron | 50.0% | |
| CCACTAAATCATGTGGGCAG+TGG | + | chr3.3:48851259-48851278 | MS.gene070285:intron | 50.0% | |
| CCACTGCCCACATGATTTAG+TGG | - | chr3.3:48851262-48851281 | None:intergenic | 50.0% | |
| CGAGTGAGATACCAACCACA+TGG | - | chr3.3:48850210-48850229 | None:intergenic | 50.0% | |
| GATCTTCAAGGCCTCTTGAC+TGG | - | chr3.3:48848747-48848766 | None:intergenic | 50.0% | |
| GCAAGATTGACAAGGAGGAG+TGG | + | chr3.3:48851060-48851079 | MS.gene070285:CDS | 50.0% | |
| GTCTCCCTAGCAAGAAGTTC+AGG | - | chr3.3:48848769-48848788 | None:intergenic | 50.0% | |
| ! | GCGTAGTGCTGGATTCTGAT+TGG | - | chr3.3:48850509-48850528 | None:intergenic | 50.0% |
| !! | GTGACGGATGCTGCAAAACA+AGG | - | chr3.3:48851091-48851110 | None:intergenic | 50.0% |
| GTTGCTACACTTGCGGAGTC+TGG | + | chr3.3:48850852-48850871 | MS.gene070285:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48848670 | 48851585 | 48848670 | ID=MS.gene070285 |
| chr3.3 | mRNA | 48848670 | 48851585 | 48848670 | ID=MS.gene070285.t1;Parent=MS.gene070285 |
| chr3.3 | exon | 48848670 | 48848793 | 48848670 | ID=MS.gene070285.t1.exon1;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48848670 | 48848793 | 48848670 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48849121 | 48849203 | 48849121 | ID=MS.gene070285.t1.exon2;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48849121 | 48849203 | 48849121 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48849440 | 48849499 | 48849440 | ID=MS.gene070285.t1.exon3;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48849440 | 48849499 | 48849440 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48850252 | 48850360 | 48850252 | ID=MS.gene070285.t1.exon4;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48850252 | 48850360 | 48850252 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48850700 | 48850752 | 48850700 | ID=MS.gene070285.t1.exon5;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48850700 | 48850752 | 48850700 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48850837 | 48850917 | 48850837 | ID=MS.gene070285.t1.exon6;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48850837 | 48850917 | 48850837 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48851029 | 48851141 | 48851029 | ID=MS.gene070285.t1.exon7;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48851029 | 48851141 | 48851029 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| chr3.3 | exon | 48851528 | 48851585 | 48851528 | ID=MS.gene070285.t1.exon8;Parent=MS.gene070285.t1 |
| chr3.3 | CDS | 48851528 | 48851585 | 48851528 | ID=cds.MS.gene070285.t1;Parent=MS.gene070285.t1 |
| Gene Sequence |
| Protein sequence |
