Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38263.t1 | XP_024639813.1 | 100 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 4.50E-122 | 447.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38263.t1 | Q75LU8 | 92.9 | 226 | 15 | 1 | 1 | 226 | 1 | 225 | 3.5e-115 | 415.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38263.t1 | B7FN44 | 100.0 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 3.3e-122 | 447.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05700 | MS.gene38263 | PPI |
| MS.gene04148 | MS.gene38263 | PPI |
| MS.gene070285 | MS.gene38263 | PPI |
| MS.gene04347 | MS.gene38263 | PPI |
| MS.gene81289 | MS.gene38263 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38263.t1 | MTR_5g096420 | 100.000 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 4.82e-168 | 462 |
| MS.gene38263.t1 | MTR_3g060730 | 93.363 | 226 | 15 | 0 | 1 | 226 | 1 | 226 | 2.89e-157 | 434 |
| MS.gene38263.t1 | MTR_4g134250 | 89.868 | 227 | 22 | 1 | 1 | 226 | 1 | 227 | 1.99e-151 | 420 |
| MS.gene38263.t1 | MTR_3g060730 | 98.913 | 184 | 2 | 0 | 43 | 226 | 5 | 188 | 1.09e-132 | 371 |
| MS.gene38263.t1 | MTR_2g027440 | 65.351 | 228 | 76 | 1 | 1 | 225 | 1 | 228 | 1.53e-110 | 317 |
| MS.gene38263.t1 | MTR_2g027500 | 68.349 | 218 | 68 | 1 | 9 | 225 | 6 | 223 | 3.67e-108 | 310 |
| MS.gene38263.t1 | MTR_2g027480 | 64.912 | 228 | 77 | 1 | 1 | 225 | 1 | 228 | 4.71e-108 | 310 |
| MS.gene38263.t1 | MTR_2g027520 | 63.203 | 231 | 80 | 1 | 1 | 226 | 1 | 231 | 6.35e-103 | 298 |
| MS.gene38263.t1 | MTR_4g099210 | 63.333 | 210 | 77 | 0 | 16 | 225 | 1 | 210 | 1.81e-94 | 275 |
| MS.gene38263.t1 | MTR_3g091440 | 60.096 | 208 | 83 | 0 | 19 | 226 | 5 | 212 | 2.00e-92 | 271 |
| MS.gene38263.t1 | MTR_1g016430 | 65.789 | 190 | 65 | 0 | 36 | 225 | 60 | 249 | 8.59e-88 | 259 |
| MS.gene38263.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 1 | 180 | 2.48e-85 | 251 |
| MS.gene38263.t1 | MTR_3g091440 | 61.413 | 184 | 71 | 0 | 43 | 226 | 30 | 213 | 2.08e-84 | 250 |
| MS.gene38263.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 99 | 278 | 6.15e-84 | 251 |
| MS.gene38263.t1 | MTR_8g099575 | 54.762 | 210 | 95 | 0 | 16 | 225 | 1 | 210 | 9.30e-82 | 243 |
| MS.gene38263.t1 | MTR_8g099570 | 57.143 | 196 | 84 | 0 | 31 | 226 | 58 | 253 | 1.50e-79 | 239 |
| MS.gene38263.t1 | MTR_8g016170 | 58.947 | 190 | 78 | 0 | 36 | 225 | 66 | 255 | 1.58e-76 | 231 |
| MS.gene38263.t1 | MTR_8g027620 | 55.612 | 196 | 87 | 0 | 31 | 226 | 39 | 234 | 1.03e-75 | 231 |
| MS.gene38263.t1 | MTR_5g013560 | 60.513 | 195 | 66 | 1 | 31 | 225 | 15 | 198 | 1.15e-74 | 224 |
| MS.gene38263.t1 | MTR_8g016170 | 58.960 | 173 | 71 | 0 | 36 | 208 | 47 | 219 | 3.13e-68 | 209 |
| MS.gene38263.t1 | MTR_3g091440 | 60.131 | 153 | 61 | 0 | 19 | 171 | 5 | 157 | 1.60e-63 | 195 |
| MS.gene38263.t1 | MTR_4g113505 | 48.913 | 184 | 94 | 0 | 42 | 225 | 6 | 189 | 6.41e-62 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38263.t1 | AT5G55990 | 89.823 | 226 | 23 | 0 | 1 | 226 | 1 | 226 | 6.72e-150 | 416 |
| MS.gene38263.t1 | AT5G55990 | 89.823 | 226 | 23 | 0 | 1 | 226 | 1 | 226 | 6.72e-150 | 416 |
| MS.gene38263.t1 | AT4G26570 | 88.938 | 226 | 25 | 0 | 1 | 226 | 1 | 226 | 6.80e-150 | 416 |
| MS.gene38263.t1 | AT4G26570 | 87.391 | 230 | 25 | 1 | 1 | 226 | 1 | 230 | 8.03e-148 | 411 |
| MS.gene38263.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 2.81e-112 | 321 |
| MS.gene38263.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 2.81e-112 | 321 |
| MS.gene38263.t1 | AT5G47100 | 68.205 | 195 | 62 | 0 | 31 | 225 | 16 | 210 | 2.76e-95 | 277 |
| MS.gene38263.t1 | AT4G17615 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 1.74e-94 | 275 |
| MS.gene38263.t1 | AT4G17615 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 1.74e-94 | 275 |
| MS.gene38263.t1 | AT4G17615 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 1.74e-94 | 275 |
| MS.gene38263.t1 | AT4G26560 | 69.271 | 192 | 46 | 2 | 48 | 226 | 23 | 214 | 4.48e-93 | 272 |
| MS.gene38263.t1 | AT5G24270 | 62.176 | 193 | 73 | 0 | 26 | 218 | 15 | 207 | 9.40e-88 | 259 |
| MS.gene38263.t1 | AT5G24270 | 62.176 | 193 | 73 | 0 | 26 | 218 | 15 | 207 | 9.40e-88 | 259 |
| MS.gene38263.t1 | AT5G24270 | 62.176 | 193 | 73 | 0 | 26 | 218 | 15 | 207 | 9.40e-88 | 259 |
| MS.gene38263.t1 | AT4G33000 | 59.817 | 219 | 87 | 1 | 8 | 225 | 28 | 246 | 1.73e-86 | 256 |
| MS.gene38263.t1 | AT4G33000 | 59.817 | 219 | 87 | 1 | 8 | 225 | 38 | 256 | 2.60e-86 | 256 |
| MS.gene38263.t1 | AT5G24270 | 62.570 | 179 | 67 | 0 | 40 | 218 | 4 | 182 | 3.21e-82 | 244 |
| MS.gene38263.t1 | AT4G17615 | 62.105 | 190 | 72 | 0 | 25 | 214 | 10 | 199 | 4.08e-82 | 245 |
| MS.gene38263.t1 | AT1G64480 | 53.555 | 211 | 98 | 0 | 15 | 225 | 4 | 214 | 1.32e-79 | 238 |
| MS.gene38263.t1 | AT1G64480 | 53.555 | 211 | 98 | 0 | 15 | 225 | 4 | 214 | 1.32e-79 | 238 |
| MS.gene38263.t1 | AT1G64480 | 53.555 | 211 | 98 | 0 | 15 | 225 | 4 | 214 | 1.32e-79 | 238 |
| MS.gene38263.t1 | AT1G64480 | 53.886 | 193 | 89 | 0 | 16 | 208 | 5 | 197 | 4.47e-72 | 218 |
| MS.gene38263.t1 | AT4G17615 | 63.057 | 157 | 58 | 0 | 69 | 225 | 12 | 168 | 3.12e-71 | 215 |
| MS.gene38263.t1 | AT5G24270 | 59.740 | 154 | 62 | 0 | 65 | 218 | 7 | 160 | 5.35e-66 | 202 |
| MS.gene38263.t1 | AT5G47100 | 65.493 | 142 | 49 | 0 | 31 | 172 | 16 | 157 | 9.03e-64 | 196 |
| MS.gene38263.t1 | AT4G01420 | 48.936 | 188 | 96 | 0 | 31 | 218 | 15 | 202 | 1.46e-60 | 189 |
| MS.gene38263.t1 | AT4G33000 | 58.788 | 165 | 67 | 1 | 8 | 171 | 28 | 192 | 1.46e-57 | 181 |
| MS.gene38263.t1 | AT4G33000 | 58.788 | 165 | 67 | 1 | 8 | 171 | 28 | 192 | 1.46e-57 | 181 |
| MS.gene38263.t1 | AT4G33000 | 59.146 | 164 | 66 | 1 | 8 | 170 | 28 | 191 | 1.69e-57 | 181 |
| MS.gene38263.t1 | AT4G01420 | 48.876 | 178 | 91 | 0 | 31 | 208 | 15 | 192 | 2.49e-56 | 178 |
| MS.gene38263.t1 | AT4G33000 | 56.557 | 122 | 52 | 1 | 11 | 131 | 31 | 152 | 1.89e-36 | 125 |
Find 44 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCCTCGCAAGAATTTC+AGG | 0.186318 | 5.3:-77871620 | None:intergenic |
| ACATGACCCTTCAGTATCTA+AGG | 0.349217 | 5.3:+77873639 | MS.gene38263:CDS |
| GTTGCTACGCTTGCTGAATC+TGG | 0.371351 | 5.3:+77873361 | MS.gene38263:CDS |
| AGAGAGTCTGTTTGCCGATC+GGG | 0.391018 | 5.3:+77872264 | MS.gene38263:CDS |
| ACAAAGCACAATGGGATACT+TGG | 0.417498 | 5.3:+77872987 | MS.gene38263:CDS |
| GACTTATATAAGCAGACAAC+AGG | 0.455103 | 5.3:+77871587 | MS.gene38263:CDS |
| CATCAATAGGGGCATTTGGA+TGG | 0.468852 | 5.3:-77873043 | None:intergenic |
| TTTGCAGGAAGAGTTTCAAT+TGG | 0.472411 | 5.3:+77872219 | MS.gene38263:intron |
| TGTGAATGGAATACAAAGCT+TGG | 0.474084 | 5.3:-77873857 | None:intergenic |
| GATGGAAAACGGAGAGGGCA+CGG | 0.478888 | 5.3:-77873025 | None:intergenic |
| ATGTCACAACATTGCAATAG+AGG | 0.481052 | 5.3:-77871563 | None:intergenic |
| TTATGTAAAGGTGAAACAAA+TGG | 0.482572 | 5.3:+77873336 | MS.gene38263:intron |
| ACTGTATGATCTCAAGCAGC+AGG | 0.484215 | 5.3:+77873209 | MS.gene38263:CDS |
| TGTTTGATACAAAGCACAAT+GGG | 0.488671 | 5.3:+77872979 | MS.gene38263:CDS |
| AAGTATCGTCTACTTGTGAA+TGG | 0.491299 | 5.3:-77873871 | None:intergenic |
| CACAAGTAGACGATACTTGA+AGG | 0.500724 | 5.3:+77873876 | MS.gene38263:CDS |
| AGCAGTGCGGTGATTGATGA+TGG | 0.501327 | 5.3:+77871949 | MS.gene38263:CDS |
| GTGAATGGAATACAAAGCTT+GGG | 0.504891 | 5.3:-77873856 | None:intergenic |
| ATGGAAAACGGAGAGGGCAC+GGG | 0.505764 | 5.3:-77873024 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.521446 | 5.3:-77873623 | None:intergenic |
| TAAATTACCTTAGATACTGA+AGG | 0.529850 | 5.3:-77873646 | None:intergenic |
| ATCATGTTGCAGTGCATAGA+GGG | 0.537202 | 5.3:+77871521 | None:intergenic |
| ATGATGGATGGCGCAAAACA+AGG | 0.543576 | 5.3:-77873607 | None:intergenic |
| AGGGGCATTTGGATGGAAAA+CGG | 0.546018 | 5.3:-77873036 | None:intergenic |
| AAGAGAGTCTGTTTGCCGAT+CGG | 0.550466 | 5.3:+77872263 | MS.gene38263:CDS |
| CTTGAGATCATACAGTTGAA+AGG | 0.567690 | 5.3:-77873202 | None:intergenic |
| GCAAGATTGACAAGGAGGAA+TGG | 0.567894 | 5.3:+77873579 | MS.gene38263:CDS |
| ATTTGGATGGAAAACGGAGA+GGG | 0.578590 | 5.3:-77873030 | None:intergenic |
| AGATCCTGAAATTCTTGCGA+GGG | 0.585224 | 5.3:+77871616 | MS.gene38263:CDS |
| TTGTTTGATACAAAGCACAA+TGG | 0.589590 | 5.3:+77872978 | MS.gene38263:CDS |
| TATCATGTTGCAGTGCATAG+AGG | 0.591820 | 5.3:+77871520 | None:intergenic |
| AAGATCCTGAAATTCTTGCG+AGG | 0.599900 | 5.3:+77871615 | MS.gene38263:CDS |
| AAATTACCTTAGATACTGAA+GGG | 0.626563 | 5.3:-77873645 | None:intergenic |
| TACAAAGCTTGGGAACGTTG+TGG | 0.634535 | 5.3:-77873846 | None:intergenic |
| CTGTATGATCTCAAGCAGCA+GGG | 0.642917 | 5.3:+77873210 | MS.gene38263:CDS |
| GCAGTGCGGTGATTGATGAT+GGG | 0.644066 | 5.3:+77871950 | MS.gene38263:CDS |
| TGTTCTTGAGTAATGATGGA+TGG | 0.645982 | 5.3:-77873619 | None:intergenic |
| GAAGCGGATACGAAGCATGA+CGG | 0.656838 | 5.3:+77873557 | MS.gene38263:CDS |
| ATAGAAATACCATACCCGAT+CGG | 0.662123 | 5.3:-77872278 | None:intergenic |
| CATTTGGATGGAAAACGGAG+AGG | 0.669040 | 5.3:-77873031 | None:intergenic |
| TATTGAGAGTATAATTGACA+AGG | 0.673907 | 5.3:+77873405 | MS.gene38263:CDS |
| TGATGATGGGCTGATCAACA+AGG | 0.685091 | 5.3:+77871963 | MS.gene38263:CDS |
| GCATGACGGCAAGATTGACA+AGG | 0.686105 | 5.3:+77873571 | MS.gene38263:CDS |
| TGACGGCAAGATTGACAAGG+AGG | 0.702524 | 5.3:+77873574 | MS.gene38263:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTTATAGTATTAAATT+TGG | - | chr5.3:77873727-77873746 | None:intergenic | 10.0% |
| !! | TTTAATGTTAAAACAAAAAA+GGG | - | chr5.3:77872811-77872830 | None:intergenic | 10.0% |
| !!! | ACAATTTTTTTTTTTTTTAG+GGG | + | chr5.3:77872582-77872601 | MS.gene38263:intron | 10.0% |
| !!! | GACAATTTTTTTTTTTTTTA+GGG | + | chr5.3:77872581-77872600 | MS.gene38263:intron | 10.0% |
| !!! | GTATTATATAGTTTTAATTT+TGG | - | chr5.3:77873132-77873151 | None:intergenic | 10.0% |
| !!! | TGACAATTTTTTTTTTTTTT+AGG | + | chr5.3:77872580-77872599 | MS.gene38263:intron | 10.0% |
| !!! | TTTTAATGTTAAAACAAAAA+AGG | - | chr5.3:77872812-77872831 | None:intergenic | 10.0% |
| !! | AATGTTAAAAAAACTCATTT+CGG | - | chr5.3:77872548-77872567 | None:intergenic | 15.0% |
| !! | AGAAAAATAAGATTTAAAGA+AGG | - | chr5.3:77873263-77873282 | None:intergenic | 15.0% |
| !! | ATTTACAATGGTAATTAATA+AGG | - | chr5.3:77872854-77872873 | None:intergenic | 15.0% |
| !!! | ATGATTTTGATAAAGAATTA+AGG | - | chr5.3:77872748-77872767 | None:intergenic | 15.0% |
| !!! | TGAAATTTTATATTGAACTA+GGG | + | chr5.3:77872720-77872739 | MS.gene38263:intron | 15.0% |
| !!! | TTTATTTTGTATGTCATATT+AGG | - | chr5.3:77872421-77872440 | None:intergenic | 15.0% |
| !! | AGTTCAATATAAAATTTCAC+AGG | - | chr5.3:77872719-77872738 | None:intergenic | 20.0% |
| !! | ATACAAAATAAACTTTGTCT+CGG | + | chr5.3:77872429-77872448 | MS.gene38263:intron | 20.0% |
| !! | ATTAATTTCTTCAATCAGAA+AGG | + | chr5.3:77872119-77872138 | MS.gene38263:intron | 20.0% |
| !! | ATTTGGAAATAAATACACAT+AGG | + | chr5.3:77871839-77871858 | MS.gene38263:intron | 20.0% |
| !!! | ATATTACATGGTTTTAGTTT+TGG | - | chr5.3:77873169-77873188 | None:intergenic | 20.0% |
| !!! | ATTTGAAGCAATATACAATA+TGG | - | chr5.3:77872915-77872934 | None:intergenic | 20.0% |
| !!! | CATGTCATATTTTATAATGT+TGG | - | chr5.3:77872147-77872166 | None:intergenic | 20.0% |
| !!! | GTGAAATTTTATATTGAACT+AGG | + | chr5.3:77872719-77872738 | MS.gene38263:intron | 20.0% |
| !!! | GTGGATATAATAAATTTTGT+TGG | + | chr5.3:77872021-77872040 | MS.gene38263:intron | 20.0% |
| !!! | TGTCAGAAAGTATAATTTAT+TGG | - | chr5.3:77872090-77872109 | None:intergenic | 20.0% |
| ! | AAATTACCTTAGATACTGAA+GGG | - | chr5.3:77873648-77873667 | None:intergenic | 25.0% |
| ! | AACTGAAACAAGATATTACA+TGG | - | chr5.3:77873181-77873200 | None:intergenic | 25.0% |
| ! | CAATGGTAATTAATAAGGTA+TGG | - | chr5.3:77872849-77872868 | None:intergenic | 25.0% |
| ! | GATTCAAAGTAAATGTAACA+AGG | + | chr5.3:77872663-77872682 | MS.gene38263:intron | 25.0% |
| ! | TAAATTACCTTAGATACTGA+AGG | - | chr5.3:77873649-77873668 | None:intergenic | 25.0% |
| ! | TATCACTATAGACTGATTAT+AGG | + | chr5.3:77873745-77873764 | MS.gene38263:intron | 25.0% |
| ! | TATTAATATGCATCATTTGC+AGG | + | chr5.3:77872204-77872223 | MS.gene38263:intron | 25.0% |
| ! | TGGTAAATTGAAAAGAAGTA+AGG | - | chr5.3:77873112-77873131 | None:intergenic | 25.0% |
| ! | TTATGTAAAGGTGAAACAAA+TGG | + | chr5.3:77873336-77873355 | MS.gene38263:intron | 25.0% |
| ! | TTGGTTATTGTTGTATTTGA+TGG | - | chr5.3:77872386-77872405 | None:intergenic | 25.0% |
| ! | TTTACATAAAAAGAAACCGA+AGG | - | chr5.3:77873325-77873344 | None:intergenic | 25.0% |
| !! | ACTCAATCTTTTCATCAATA+GGG | - | chr5.3:77873058-77873077 | None:intergenic | 25.0% |
| !! | TATTGAGAGTATAATTGACA+AGG | + | chr5.3:77873405-77873424 | MS.gene38263:CDS | 25.0% |
| !! | TGTATGTTACTTCAATTCTT+TGG | + | chr5.3:77873077-77873096 | MS.gene38263:intron | 25.0% |
| !! | TTCGGTTTCTTTTTATGTAA+AGG | + | chr5.3:77873324-77873343 | MS.gene38263:intron | 25.0% |
| !!! | ACTTTTTGATTTTGAAAGCA+TGG | + | chr5.3:77871760-77871779 | MS.gene38263:intron | 25.0% |
| !!! | ATGCTCTTGTATTTTATTTG+TGG | + | chr5.3:77871793-77871812 | MS.gene38263:intron | 25.0% |
| !!! | CATGTTTTTTTGCATTGAAA+AGG | - | chr5.3:77872052-77872071 | None:intergenic | 25.0% |
| !!! | TAAGTTTTTGCTTCTTGTTT+AGG | + | chr5.3:77873283-77873302 | MS.gene38263:intron | 25.0% |
| !!! | TATTAGGTTGAAATAAGACT+TGG | - | chr5.3:77872405-77872424 | None:intergenic | 25.0% |
| !!! | TTAGTTTTAACATTGGGTTT+CGG | + | chr5.3:77873515-77873534 | MS.gene38263:intron | 25.0% |
| !!! | TTTTTTTTAGGGGAATCATA+TGG | + | chr5.3:77872592-77872611 | MS.gene38263:intron | 25.0% |
| AAAACAAAAAAGGGAACATG+TGG | - | chr5.3:77872802-77872821 | None:intergenic | 30.0% | |
| AAACAAAAAAGGGAACATGT+GGG | - | chr5.3:77872801-77872820 | None:intergenic | 30.0% | |
| ACTCATTTCAGTTAACTTTG+TGG | - | chr5.3:77872502-77872521 | None:intergenic | 30.0% | |
| AGAAGGAATAGCATTTACAA+TGG | - | chr5.3:77872866-77872885 | None:intergenic | 30.0% | |
| CTTGAAACAGAAAAACAGAT+TGG | - | chr5.3:77873478-77873497 | None:intergenic | 30.0% | |
| GAAAGGTCGTAATCTTAAAA+GGG | - | chr5.3:77873441-77873460 | None:intergenic | 30.0% | |
| GTGGGAAAACTTATAATTGA+AGG | - | chr5.3:77872783-77872802 | None:intergenic | 30.0% | |
| GTTACATTTACTTTGAATCG+TGG | - | chr5.3:77872662-77872681 | None:intergenic | 30.0% | |
| TAAGAATAACATGTGAGAAG+AGG | - | chr5.3:77872631-77872650 | None:intergenic | 30.0% | |
| TGTTTGATACAAAGCACAAT+GGG | + | chr5.3:77872979-77872998 | MS.gene38263:CDS | 30.0% | |
| TTCAAGAAGTAACGAAAACA+CGG | + | chr5.3:77873492-77873511 | MS.gene38263:intron | 30.0% | |
| TTGTGGTAGTAAAAAGAAGA+CGG | - | chr5.3:77872485-77872504 | None:intergenic | 30.0% | |
| TTGTTTGATACAAAGCACAA+TGG | + | chr5.3:77872978-77872997 | MS.gene38263:CDS | 30.0% | |
| ! | CACTCAATCTTTTCATCAAT+AGG | - | chr5.3:77873059-77873078 | None:intergenic | 30.0% |
| ! | CTCAATCTTTTCATCAATAG+GGG | - | chr5.3:77873057-77873076 | None:intergenic | 30.0% |
| ! | TTTGTTTCTCTGATCAGATT+AGG | + | chr5.3:77872347-77872366 | MS.gene38263:intron | 30.0% |
| !! | CCTTTTTCATGTGTTGAATA+GGG | + | chr5.3:77873817-77873836 | MS.gene38263:intron | 30.0% |
| !! | TCCTTTTTCATGTGTTGAAT+AGG | + | chr5.3:77873816-77873835 | MS.gene38263:intron | 30.0% |
| !!! | AACACGGTTAGTTTTAACAT+TGG | + | chr5.3:77873508-77873527 | MS.gene38263:intron | 30.0% |
| !!! | ACACGGTTAGTTTTAACATT+GGG | + | chr5.3:77873509-77873528 | MS.gene38263:intron | 30.0% |
| AGTAGTCATGAAAACAAGAG+AGG | - | chr5.3:77872692-77872711 | None:intergenic | 35.0% | |
| ATAGAAATACCATACCCGAT+CGG | - | chr5.3:77872281-77872300 | None:intergenic | 35.0% | |
| ATCTGACATGAGCTTATTTC+TGG | + | chr5.3:77872942-77872961 | MS.gene38263:intron | 35.0% | |
| ATGTCACAACATTGCAATAG+AGG | - | chr5.3:77871566-77871585 | None:intergenic | 35.0% | |
| CAGATTGGTATATATGCTAG+AGG | - | chr5.3:77873463-77873482 | None:intergenic | 35.0% | |
| CCCTATTCAACACATGAAAA+AGG | - | chr5.3:77873820-77873839 | None:intergenic | 35.0% | |
| CTTGAGATCATACAGTTGAA+AGG | - | chr5.3:77873205-77873224 | None:intergenic | 35.0% | |
| GACTTATATAAGCAGACAAC+AGG | + | chr5.3:77871587-77871606 | MS.gene38263:CDS | 35.0% | |
| GGAAAGGTCGTAATCTTAAA+AGG | - | chr5.3:77873442-77873461 | None:intergenic | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr5.3:77873626-77873645 | None:intergenic | 35.0% | |
| GTCGTAATCTTAAAAGGGTT+GGG | - | chr5.3:77873436-77873455 | None:intergenic | 35.0% | |
| GTGAATGGAATACAAAGCTT+GGG | - | chr5.3:77873859-77873878 | None:intergenic | 35.0% | |
| TGGTATATATGCTAGAGGAA+AGG | - | chr5.3:77873458-77873477 | None:intergenic | 35.0% | |
| TGTGAATGGAATACAAAGCT+TGG | - | chr5.3:77873860-77873879 | None:intergenic | 35.0% | |
| TGTGGTAGTAAAAAGAAGAC+GGG | - | chr5.3:77872484-77872503 | None:intergenic | 35.0% | |
| TTACCTCTCACACTACTATT+TGG | + | chr5.3:77871822-77871841 | MS.gene38263:intron | 35.0% | |
| TTTCCAAATAGTAGTGTGAG+AGG | - | chr5.3:77871828-77871847 | None:intergenic | 35.0% | |
| TTTGCAGGAAGAGTTTCAAT+TGG | + | chr5.3:77872219-77872238 | MS.gene38263:intron | 35.0% | |
| ! | AAGAGTGCATAGACATAAGT+TGG | - | chr5.3:77873690-77873709 | None:intergenic | 35.0% |
| ! | AAGTATCGTCTACTTGTGAA+TGG | - | chr5.3:77873874-77873893 | None:intergenic | 35.0% |
| ! | ATTGTTGTATTTGATGGCCT+TGG | - | chr5.3:77872380-77872399 | None:intergenic | 35.0% |
| ! | CTCATTTCGGTTTAACTTTG+TGG | - | chr5.3:77872535-77872554 | None:intergenic | 35.0% |
| ! | CTTTAAAAAGATCAGCAGTG+CGG | + | chr5.3:77871936-77871955 | MS.gene38263:CDS | 35.0% |
| ! | TCTGACATGAGCTTATTTCT+GGG | + | chr5.3:77872943-77872962 | MS.gene38263:intron | 35.0% |
| ! | TGTTCTTGAGTAATGATGGA+TGG | - | chr5.3:77873622-77873641 | None:intergenic | 35.0% |
| ! | TTGTTGTATTTGATGGCCTT+GGG | - | chr5.3:77872379-77872398 | None:intergenic | 35.0% |
| !!! | GGGTTTTATTGAAAGACAAG+AGG | + | chr5.3:77873230-77873249 | MS.gene38263:CDS | 35.0% |
| !!! | TTTTCATCAATAGGGGCATT+TGG | - | chr5.3:77873050-77873069 | None:intergenic | 35.0% |
| AAGATCCTGAAATTCTTGCG+AGG | + | chr5.3:77871615-77871634 | MS.gene38263:CDS | 40.0% | |
| ACAAAGCACAATGGGATACT+TGG | + | chr5.3:77872987-77873006 | MS.gene38263:CDS | 40.0% | |
| ACATGACCCTTCAGTATCTA+AGG | + | chr5.3:77873639-77873658 | MS.gene38263:CDS | 40.0% | |
| AGATCCTGAAATTCTTGCGA+GGG | + | chr5.3:77871616-77871635 | MS.gene38263:CDS | 40.0% | |
| ATTTGGATGGAAAACGGAGA+GGG | - | chr5.3:77873033-77873052 | None:intergenic | 40.0% | |
| CAATACATGCACATGTTGCA+AGG | - | chr5.3:77872890-77872909 | None:intergenic | 40.0% | |
| CTTGCAACATGTGCATGTAT+TGG | + | chr5.3:77872888-77872907 | MS.gene38263:intron | 40.0% | |
| GCTTCATTACTGACAACTTG+TGG | + | chr5.3:77871995-77872014 | MS.gene38263:intron | 40.0% | |
| GGTCGTAATCTTAAAAGGGT+TGG | - | chr5.3:77873437-77873456 | None:intergenic | 40.0% | |
| TACTGACAACTTGTGGTTTG+TGG | + | chr5.3:77872002-77872021 | MS.gene38263:intron | 40.0% | |
| ! | ACAAGCCTGATTTGTACCTT+CGG | + | chr5.3:77873306-77873325 | MS.gene38263:intron | 40.0% |
| ! | AGAAACCGAAGGTACAAATC+AGG | - | chr5.3:77873314-77873333 | None:intergenic | 40.0% |
| !! | ACATGAGCTTATTTCTGGGT+AGG | + | chr5.3:77872947-77872966 | MS.gene38263:intron | 40.0% |
| !! | CGGATTTGTTCAGACTTTTG+AGG | + | chr5.3:77873535-77873554 | MS.gene38263:intron | 40.0% |
| !! | TGTTCAGACTTTTGAGGAAG+CGG | + | chr5.3:77873541-77873560 | MS.gene38263:intron | 40.0% |
| AAGAGAGTCTGTTTGCCGAT+CGG | + | chr5.3:77872263-77872282 | MS.gene38263:CDS | 45.0% | |
| ACTGTATGATCTCAAGCAGC+AGG | + | chr5.3:77873209-77873228 | MS.gene38263:CDS | 45.0% | |
| CATTTGGATGGAAAACGGAG+AGG | - | chr5.3:77873034-77873053 | None:intergenic | 45.0% | |
| CTGTATGATCTCAAGCAGCA+GGG | + | chr5.3:77873210-77873229 | MS.gene38263:CDS | 45.0% | |
| GCAAGATTGACAAGGAGGAA+TGG | + | chr5.3:77873579-77873598 | MS.gene38263:CDS | 45.0% | |
| TACAAAGCTTGGGAACGTTG+TGG | - | chr5.3:77873849-77873868 | None:intergenic | 45.0% | |
| TCTCTGATCAGATTAGGCCA+AGG | + | chr5.3:77872353-77872372 | MS.gene38263:intron | 45.0% | |
| TGCACATGTTGCAAGGAAGA+AGG | - | chr5.3:77872883-77872902 | None:intergenic | 45.0% | |
| !! | AGGGGCATTTGGATGGAAAA+CGG | - | chr5.3:77873039-77873058 | None:intergenic | 45.0% |
| !! | ATGATGGATGGCGCAAAACA+AGG | - | chr5.3:77873610-77873629 | None:intergenic | 45.0% |
| !! | CATCAATAGGGGCATTTGGA+TGG | - | chr5.3:77873046-77873065 | None:intergenic | 45.0% |
| !! | TGATGATGGGCTGATCAACA+AGG | + | chr5.3:77871963-77871982 | MS.gene38263:CDS | 45.0% |
| !! | ATATTAATAATTAATATTGT+AGG | - | chr5.3:77872193-77872212 | None:intergenic | 5.0% |
| !!! | ATTTTTTCATTTTATATTTT+TGG | + | chr5.3:77873781-77873800 | MS.gene38263:intron | 5.0% |
| AGAGAGTCTGTTTGCCGATC+GGG | + | chr5.3:77872264-77872283 | MS.gene38263:CDS | 50.0% | |
| AGCAGTGCGGTGATTGATGA+TGG | + | chr5.3:77871949-77871968 | MS.gene38263:CDS | 50.0% | |
| GAAGCGGATACGAAGCATGA+CGG | + | chr5.3:77873557-77873576 | MS.gene38263:CDS | 50.0% | |
| GCATGACGGCAAGATTGACA+AGG | + | chr5.3:77873571-77873590 | MS.gene38263:CDS | 50.0% | |
| GTCTCCCTCGCAAGAATTTC+AGG | - | chr5.3:77871623-77871642 | None:intergenic | 50.0% | |
| TGACGGCAAGATTGACAAGG+AGG | + | chr5.3:77873574-77873593 | MS.gene38263:CDS | 50.0% | |
| ! | GCAGTGCGGTGATTGATGAT+GGG | + | chr5.3:77871950-77871969 | MS.gene38263:CDS | 50.0% |
| ! | GTTGCTACGCTTGCTGAATC+TGG | + | chr5.3:77873361-77873380 | MS.gene38263:CDS | 50.0% |
| ! | TATTTGATGGCCTTGGGCCT+TGG | - | chr5.3:77872373-77872392 | None:intergenic | 50.0% |
| GATGGAAAACGGAGAGGGCA+CGG | - | chr5.3:77873028-77873047 | None:intergenic | 55.0% | |
| GTCTGTTTGCCGATCGGGTA+TGG | + | chr5.3:77872269-77872288 | MS.gene38263:intron | 55.0% | |
| TCAGATTAGGCCAAGGCCCA+AGG | + | chr5.3:77872360-77872379 | MS.gene38263:intron | 55.0% | |
| ! | ATGGAAAACGGAGAGGGCAC+GGG | - | chr5.3:77873027-77873046 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77871524 | 77873895 | 77871524 | ID=MS.gene38263 |
| chr5.3 | mRNA | 77871524 | 77873895 | 77871524 | ID=MS.gene38263.t1;Parent=MS.gene38263 |
| chr5.3 | exon | 77871524 | 77871647 | 77871524 | ID=MS.gene38263.t1.exon1;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77871524 | 77871647 | 77871524 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77871902 | 77871984 | 77871902 | ID=MS.gene38263.t1.exon2;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77871902 | 77871984 | 77871902 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77872226 | 77872285 | 77872226 | ID=MS.gene38263.t1.exon3;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77872226 | 77872285 | 77872226 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77872969 | 77873077 | 77872969 | ID=MS.gene38263.t1.exon4;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77872969 | 77873077 | 77872969 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77873199 | 77873251 | 77873199 | ID=MS.gene38263.t1.exon5;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77873199 | 77873251 | 77873199 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77873346 | 77873426 | 77873346 | ID=MS.gene38263.t1.exon6;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77873346 | 77873426 | 77873346 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77873548 | 77873660 | 77873548 | ID=MS.gene38263.t1.exon7;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77873548 | 77873660 | 77873548 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| chr5.3 | exon | 77873838 | 77873895 | 77873838 | ID=MS.gene38263.t1.exon8;Parent=MS.gene38263.t1 |
| chr5.3 | CDS | 77873838 | 77873895 | 77873838 | ID=cds.MS.gene38263.t1;Parent=MS.gene38263.t1 |
| Gene Sequence |
| Protein sequence |
