Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05700.t1 | XP_003600397.2 | 100 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05700.t1 | Q75LU8 | 91.6 | 226 | 18 | 1 | 1 | 226 | 1 | 225 | 3.9e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05700.t1 | G7IXS6 | 100.0 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05700 | MS.gene38263 | PPI |
| MS.gene81289 | MS.gene05700 | PPI |
| MS.gene05700 | MS.gene070285 | PPI |
| MS.gene05700 | MS.gene04148 | PPI |
| MS.gene04347 | MS.gene05700 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05700.t1 | MTR_3g060730 | 100.000 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 1.58e-167 | 461 |
| MS.gene05700.t1 | MTR_5g096420 | 93.363 | 226 | 15 | 0 | 1 | 226 | 1 | 226 | 2.89e-157 | 434 |
| MS.gene05700.t1 | MTR_4g134250 | 90.749 | 227 | 20 | 1 | 1 | 226 | 1 | 227 | 1.25e-151 | 420 |
| MS.gene05700.t1 | MTR_3g060730 | 100.000 | 184 | 0 | 0 | 43 | 226 | 5 | 188 | 6.71e-134 | 374 |
| MS.gene05700.t1 | MTR_2g027440 | 66.667 | 228 | 73 | 1 | 1 | 225 | 1 | 228 | 6.15e-113 | 323 |
| MS.gene05700.t1 | MTR_2g027480 | 66.228 | 228 | 74 | 1 | 1 | 225 | 1 | 228 | 1.29e-110 | 317 |
| MS.gene05700.t1 | MTR_2g027500 | 68.950 | 219 | 67 | 1 | 8 | 225 | 5 | 223 | 7.69e-110 | 315 |
| MS.gene05700.t1 | MTR_2g027520 | 64.069 | 231 | 78 | 1 | 1 | 226 | 1 | 231 | 2.91e-105 | 303 |
| MS.gene05700.t1 | MTR_3g091440 | 60.577 | 208 | 82 | 0 | 19 | 226 | 5 | 212 | 8.86e-94 | 274 |
| MS.gene05700.t1 | MTR_4g099210 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 9.44e-94 | 273 |
| MS.gene05700.t1 | MTR_1g016430 | 56.957 | 230 | 94 | 1 | 1 | 225 | 20 | 249 | 7.78e-88 | 260 |
| MS.gene05700.t1 | MTR_3g091440 | 62.500 | 184 | 69 | 0 | 43 | 226 | 30 | 213 | 1.39e-85 | 253 |
| MS.gene05700.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 1 | 180 | 2.96e-85 | 251 |
| MS.gene05700.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 99 | 278 | 7.24e-84 | 251 |
| MS.gene05700.t1 | MTR_8g099575 | 57.436 | 195 | 83 | 0 | 31 | 225 | 16 | 210 | 4.95e-81 | 241 |
| MS.gene05700.t1 | MTR_8g099570 | 57.143 | 196 | 84 | 0 | 31 | 226 | 58 | 253 | 2.82e-79 | 238 |
| MS.gene05700.t1 | MTR_8g016170 | 59.474 | 190 | 77 | 0 | 36 | 225 | 66 | 255 | 7.11e-77 | 232 |
| MS.gene05700.t1 | MTR_8g027620 | 55.612 | 196 | 87 | 0 | 31 | 226 | 39 | 234 | 3.20e-76 | 232 |
| MS.gene05700.t1 | MTR_5g013560 | 59.487 | 195 | 68 | 1 | 31 | 225 | 15 | 198 | 1.65e-73 | 222 |
| MS.gene05700.t1 | MTR_8g016170 | 59.538 | 173 | 70 | 0 | 36 | 208 | 47 | 219 | 1.11e-68 | 210 |
| MS.gene05700.t1 | MTR_3g091440 | 60.131 | 153 | 61 | 0 | 19 | 171 | 5 | 157 | 1.83e-64 | 198 |
| MS.gene05700.t1 | MTR_4g113505 | 48.370 | 184 | 95 | 0 | 42 | 225 | 6 | 189 | 2.90e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05700.t1 | AT4G26570 | 90.708 | 226 | 21 | 0 | 1 | 226 | 1 | 226 | 5.89e-151 | 419 |
| MS.gene05700.t1 | AT4G26570 | 89.130 | 230 | 21 | 1 | 1 | 226 | 1 | 230 | 6.66e-149 | 414 |
| MS.gene05700.t1 | AT5G55990 | 90.265 | 226 | 22 | 0 | 1 | 226 | 1 | 226 | 1.71e-148 | 412 |
| MS.gene05700.t1 | AT5G55990 | 90.265 | 226 | 22 | 0 | 1 | 226 | 1 | 226 | 1.71e-148 | 412 |
| MS.gene05700.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 7.36e-112 | 320 |
| MS.gene05700.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 7.36e-112 | 320 |
| MS.gene05700.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene05700.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene05700.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene05700.t1 | AT4G26560 | 70.312 | 192 | 44 | 2 | 48 | 226 | 23 | 214 | 2.16e-94 | 275 |
| MS.gene05700.t1 | AT5G47100 | 67.179 | 195 | 64 | 0 | 31 | 225 | 16 | 210 | 4.12e-94 | 275 |
| MS.gene05700.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene05700.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene05700.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene05700.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 31 | 246 | 6.15e-87 | 257 |
| MS.gene05700.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 41 | 256 | 8.92e-87 | 257 |
| MS.gene05700.t1 | AT4G17615 | 63.441 | 186 | 68 | 0 | 28 | 213 | 13 | 198 | 1.04e-82 | 247 |
| MS.gene05700.t1 | AT5G24270 | 62.570 | 179 | 67 | 0 | 40 | 218 | 4 | 182 | 2.79e-82 | 244 |
| MS.gene05700.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene05700.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene05700.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene05700.t1 | AT1G64480 | 52.792 | 197 | 93 | 0 | 12 | 208 | 1 | 197 | 1.34e-72 | 219 |
| MS.gene05700.t1 | AT4G17615 | 63.057 | 157 | 58 | 0 | 69 | 225 | 12 | 168 | 2.86e-71 | 215 |
| MS.gene05700.t1 | AT5G24270 | 59.740 | 154 | 62 | 0 | 65 | 218 | 7 | 160 | 6.88e-66 | 201 |
| MS.gene05700.t1 | AT5G47100 | 64.789 | 142 | 50 | 0 | 31 | 172 | 16 | 157 | 5.58e-63 | 194 |
| MS.gene05700.t1 | AT4G01420 | 49.741 | 193 | 97 | 0 | 26 | 218 | 10 | 202 | 1.12e-62 | 194 |
| MS.gene05700.t1 | AT4G01420 | 49.727 | 183 | 92 | 0 | 26 | 208 | 10 | 192 | 1.96e-58 | 183 |
| MS.gene05700.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.53e-57 | 181 |
| MS.gene05700.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.53e-57 | 181 |
| MS.gene05700.t1 | AT4G33000 | 59.006 | 161 | 65 | 1 | 11 | 170 | 31 | 191 | 2.63e-57 | 181 |
| MS.gene05700.t1 | AT4G33000 | 55.738 | 122 | 53 | 1 | 11 | 131 | 31 | 152 | 1.71e-36 | 126 |
Find 50 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCAAGTATCATCTACT+TGG | 0.316480 | 3.2:-51779367 | None:intergenic |
| AGAAAGTTTGTTTGCTGATC+GGG | 0.319506 | 3.2:+51777088 | MS.gene05700:CDS |
| ATTCAATCTTATCATCAATA+GGG | 0.343925 | 3.2:-51777948 | None:intergenic |
| CATTCAATCTTATCATCAAT+AGG | 0.360435 | 3.2:-51777949 | None:intergenic |
| TTATCATCAATAGGGGCATT+TGG | 0.366158 | 3.2:-51777940 | None:intergenic |
| GTCTCCCTAGCAAGAAGTTC+AGG | 0.379316 | 3.2:-51776376 | None:intergenic |
| TACCATGTTGCAGTGCTTAG+AGG | 0.427015 | 3.2:+51776276 | None:intergenic |
| CTTGCAGGAAGAATTTCAAT+TGG | 0.430829 | 3.2:+51777043 | MS.gene05700:intron |
| GATCTTCAAGGCCTCTTGAC+TGG | 0.445973 | 3.2:-51776354 | None:intergenic |
| ACAAAGCACAATGGGATACT+AGG | 0.447006 | 3.2:+51777880 | MS.gene05700:CDS |
| CAAGAAGTTCAGGATCTTCA+AGG | 0.447125 | 3.2:-51776366 | None:intergenic |
| CATCAATAGGGGCATTTGGA+TGG | 0.463572 | 3.2:-51777936 | None:intergenic |
| TGGGAATGGAATACAAAGCT+TGG | 0.469623 | 3.2:-51779347 | None:intergenic |
| TATTTGATACAAAGCACAAT+GGG | 0.478319 | 3.2:+51777872 | MS.gene05700:CDS |
| GTTGCTACACTTGCGGAGTC+CGG | 0.478644 | 3.2:+51778462 | MS.gene05700:CDS |
| GGATTATTTGCAGACGTTTG+AGG | 0.484901 | 3.2:+51778627 | MS.gene05700:intron |
| CCCAAGTAGATGATACTTGA+AGG | 0.485093 | 3.2:+51779366 | MS.gene05700:CDS |
| AAAATTACTTGAGATATTGA+AGG | 0.486094 | 3.2:-51778738 | None:intergenic |
| AGTAGTGCTGTAATTGATGA+TGG | 0.499604 | 3.2:+51776778 | MS.gene05700:CDS |
| AAGAAAGTTTGTTTGCTGAT+CGG | 0.502858 | 3.2:+51777087 | MS.gene05700:CDS |
| AAGATCCTGAACTTCTTGCT+AGG | 0.502884 | 3.2:+51776371 | MS.gene05700:CDS |
| GGGAATGGAATACAAAGCTT+GGG | 0.509455 | 3.2:-51779346 | None:intergenic |
| ATTTGGATGGAAAACGGATA+GGG | 0.523943 | 3.2:-51777923 | None:intergenic |
| CATTTGGATGGAAAACGGAT+AGG | 0.526248 | 3.2:-51777924 | None:intergenic |
| ACCATGTTGCAGTGCTTAGA+GGG | 0.527412 | 3.2:+51776277 | None:intergenic |
| AAGTATCATCTACTTGGGAA+TGG | 0.527759 | 3.2:-51779361 | None:intergenic |
| AGGGGCATTTGGATGGAAAA+CGG | 0.529208 | 3.2:-51777929 | None:intergenic |
| GTGACGGATGCCGCAAAACA+AGG | 0.557110 | 3.2:-51778699 | None:intergenic |
| AGATCCTGAACTTCTTGCTA+GGG | 0.557142 | 3.2:+51776372 | MS.gene05700:CDS |
| TGATGATGGGTTGATTAACA+AGG | 0.559178 | 3.2:+51776792 | MS.gene05700:CDS |
| CTTGAGATCATATAGTTGAA+AGG | 0.560664 | 3.2:-51778313 | None:intergenic |
| CCTTCAAGTATCATCTACTT+GGG | 0.574104 | 3.2:-51779366 | None:intergenic |
| GATATAAATAACCAGTCAAG+AGG | 0.576093 | 3.2:+51776343 | MS.gene05700:CDS |
| TTCAATCTTATCATCAATAG+GGG | 0.577092 | 3.2:-51777947 | None:intergenic |
| GTCATGTTCTTCAAAAGTGA+CGG | 0.587926 | 3.2:-51778715 | None:intergenic |
| AAATTACTTGAGATATTGAA+GGG | 0.590949 | 3.2:-51778737 | None:intergenic |
| GCAAGATTGACAAGGAGGAG+TGG | 0.614720 | 3.2:+51778671 | MS.gene05700:CDS |
| ATCGTCCGATAGATTCATAC+CGG | 0.617648 | 3.2:-51778481 | None:intergenic |
| GGAGTCCGGTATGAATCTAT+CGG | 0.622480 | 3.2:+51778476 | MS.gene05700:CDS |
| TATACAGGTGAAACAAATGG+TGG | 0.623629 | 3.2:+51778440 | MS.gene05700:intron |
| TTATTTGATACAAAGCACAA+TGG | 0.632496 | 3.2:+51777871 | MS.gene05700:CDS |
| TCCCTCTAAGCACTGCAACA+TGG | 0.634698 | 3.2:-51776278 | None:intergenic |
| GAAGCAGATACAAAGCATGA+TGG | 0.634840 | 3.2:+51778649 | MS.gene05700:CDS |
| CTATATGATCTCAAGCAGCA+AGG | 0.650338 | 3.2:+51778321 | MS.gene05700:CDS |
| AATGGTGGTTGCTACACTTG+CGG | 0.655953 | 3.2:+51778455 | MS.gene05700:CDS |
| GTAGTGCTGTAATTGATGAT+GGG | 0.667152 | 3.2:+51776779 | MS.gene05700:CDS |
| TACAAAGCTTGGGAATGTTG+TGG | 0.667515 | 3.2:-51779336 | None:intergenic |
| GCATGATGGCAAGATTGACA+AGG | 0.674338 | 3.2:+51778663 | MS.gene05700:CDS |
| TGATGGCAAGATTGACAAGG+AGG | 0.679906 | 3.2:+51778666 | MS.gene05700:CDS |
| TATAGAAAGTATAATCGACA+AGG | 0.691619 | 3.2:+51778506 | MS.gene05700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACTTGTTAAAAAATTA+CGG | - | chr3.2:51778769-51778788 | None:intergenic | 10.0% |
| !!! | AATAGTTTAACATTAAATTT+TGG | + | chr3.2:51778606-51778625 | MS.gene05700:intron | 10.0% |
| !!! | ATGTTTTATTTTCTATTTTA+TGG | + | chr3.2:51777218-51777237 | MS.gene05700:intron | 10.0% |
| !!! | TGTTTTATTTTCTATTTTAT+GGG | + | chr3.2:51777219-51777238 | MS.gene05700:intron | 10.0% |
| !! | AAGTAAATTTAACGTTATAT+TGG | - | chr3.2:51777249-51777268 | None:intergenic | 15.0% |
| !! | ACTAAAATTGAATATAACAT+CGG | - | chr3.2:51777017-51777036 | None:intergenic | 15.0% |
| !! | ATATAACGTTAAATTTACTT+TGG | + | chr3.2:51777249-51777268 | MS.gene05700:intron | 15.0% |
| !! | ATGAAAATCAATATAAGAAA+AGG | - | chr3.2:51779296-51779315 | None:intergenic | 15.0% |
| !! | GTATGTAATATTTATACTAT+AGG | + | chr3.2:51776680-51776699 | MS.gene05700:intron | 15.0% |
| !! | TAAATTAAAGAAGAGTTTAA+TGG | - | chr3.2:51778227-51778246 | None:intergenic | 15.0% |
| !! | TAAATTCTTTAATGAGAAAA+GGG | + | chr3.2:51778054-51778073 | MS.gene05700:intron | 15.0% |
| !! | TGAAAATCAATATAAGAAAA+GGG | - | chr3.2:51779295-51779314 | None:intergenic | 15.0% |
| !!! | AAAATCCAATTCTATTTTTT+TGG | + | chr3.2:51778379-51778398 | MS.gene05700:intron | 15.0% |
| !! | AAAATTACTTGAGATATTGA+AGG | - | chr3.2:51778741-51778760 | None:intergenic | 20.0% |
| !! | AAATTACTTGAGATATTGAA+GGG | - | chr3.2:51778740-51778759 | None:intergenic | 20.0% |
| !! | AAATTCTTTAATGAGAAAAG+GGG | + | chr3.2:51778055-51778074 | MS.gene05700:intron | 20.0% |
| !! | AGTAGAAATGATAATTAATC+CGG | - | chr3.2:51777745-51777764 | None:intergenic | 20.0% |
| !! | ATAGAATAAAGTAGCATTAA+CGG | - | chr3.2:51776412-51776431 | None:intergenic | 20.0% |
| !! | ATAGTAAACACTGTATATTA+AGG | - | chr3.2:51777653-51777672 | None:intergenic | 20.0% |
| !! | ATTAAACATATTACAAGGAA+AGG | - | chr3.2:51777780-51777799 | None:intergenic | 20.0% |
| !! | ATTCAATCTTATCATCAATA+GGG | - | chr3.2:51777951-51777970 | None:intergenic | 20.0% |
| !! | CAATATTCTGTTGAATTTAA+AGG | + | chr3.2:51776546-51776565 | MS.gene05700:intron | 20.0% |
| !! | CTAAAAAGAAAAAAAGATGT+TGG | - | chr3.2:51779261-51779280 | None:intergenic | 20.0% |
| !! | GTAAATTCTTTAATGAGAAA+AGG | + | chr3.2:51778053-51778072 | MS.gene05700:intron | 20.0% |
| !! | TAGTTTCATCATGTAAATTA+AGG | + | chr3.2:51777443-51777462 | MS.gene05700:intron | 20.0% |
| !! | TTCTCATTTATTTAAAGAGA+AGG | - | chr3.2:51778263-51778282 | None:intergenic | 20.0% |
| !! | TTGGTTAAAATTCAAATGAT+AGG | + | chr3.2:51778848-51778867 | MS.gene05700:intron | 20.0% |
| !!! | ATATTGATTTTCATGTGTTT+GGG | + | chr3.2:51779302-51779321 | MS.gene05700:intron | 20.0% |
| !!! | TATATTGATTTTCATGTGTT+TGG | + | chr3.2:51779301-51779320 | MS.gene05700:intron | 20.0% |
| !!! | TCATTTGAATTTTAACCAAT+AGG | - | chr3.2:51778847-51778866 | None:intergenic | 20.0% |
| ! | ACAAAACAGATAGAATAGAA+GGG | - | chr3.2:51777123-51777142 | None:intergenic | 25.0% |
| ! | AGTTACAAAATGAGTTTATG+TGG | + | chr3.2:51778156-51778175 | MS.gene05700:intron | 25.0% |
| ! | CATTCAATCTTATCATCAAT+AGG | - | chr3.2:51777952-51777971 | None:intergenic | 25.0% |
| ! | CTCTTTATTGAAAACTCAAT+TGG | + | chr3.2:51778583-51778602 | MS.gene05700:intron | 25.0% |
| ! | GAACTAGAACAAAAAAGAAA+TGG | + | chr3.2:51776588-51776607 | MS.gene05700:intron | 25.0% |
| ! | GATAAACAAAACATATGAAC+AGG | - | chr3.2:51777676-51777695 | None:intergenic | 25.0% |
| ! | GTCAAAAAGTTGTAGTAAAT+TGG | - | chr3.2:51778939-51778958 | None:intergenic | 25.0% |
| ! | GTTAGATGACATCATATAAT+AGG | + | chr3.2:51777385-51777404 | MS.gene05700:intron | 25.0% |
| ! | TAAAAAGACAGACAAAAATC+AGG | - | chr3.2:51778422-51778441 | None:intergenic | 25.0% |
| ! | TAAGAACTAACATAATATCC+CGG | - | chr3.2:51777162-51777181 | None:intergenic | 25.0% |
| ! | TATTTGATACAAAGCACAAT+GGG | + | chr3.2:51777872-51777891 | MS.gene05700:CDS | 25.0% |
| ! | TCTTGAAAATATGTGTGTAA+AGG | - | chr3.2:51777706-51777725 | None:intergenic | 25.0% |
| ! | TGATATATGTACAACCATTT+GGG | - | chr3.2:51779147-51779166 | None:intergenic | 25.0% |
| ! | TTATTTGATACAAAGCACAA+TGG | + | chr3.2:51777871-51777890 | MS.gene05700:CDS | 25.0% |
| ! | TTCAATCTTATCATCAATAG+GGG | - | chr3.2:51777950-51777969 | None:intergenic | 25.0% |
| ! | TTTCAAGAAAAATCACTTTC+CGG | + | chr3.2:51777718-51777737 | MS.gene05700:intron | 25.0% |
| !! | ATGTTATTGTTTTCCTTCTT+TGG | + | chr3.2:51776965-51776984 | MS.gene05700:intron | 25.0% |
| !! | CACTTGACAAATATTTCTAA+AGG | - | chr3.2:51779233-51779252 | None:intergenic | 25.0% |
| !! | TATAGAAAGTATAATCGACA+AGG | + | chr3.2:51778506-51778525 | MS.gene05700:CDS | 25.0% |
| !! | TTTTATACAGGTGAAACAAA+TGG | + | chr3.2:51778437-51778456 | MS.gene05700:intron | 25.0% |
| !! | TTTTGTCTGTCTTTTTATAC+AGG | + | chr3.2:51778425-51778444 | MS.gene05700:intron | 25.0% |
| !!! | ATTTCTAAAGGAGTGTTATT+TGG | - | chr3.2:51779221-51779240 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTAGTTAGTTTAC+CGG | + | chr3.2:51777409-51777428 | MS.gene05700:intron | 25.0% |
| !!! | TTTTGGAGTATTCTTCAAAA+CGG | + | chr3.2:51779189-51779208 | MS.gene05700:intron | 25.0% |
| AAATGATAATTAATCCGGTC+CGG | - | chr3.2:51777740-51777759 | None:intergenic | 30.0% | |
| AACAGTGGTGTGAAAAATAA+TGG | - | chr3.2:51776650-51776669 | None:intergenic | 30.0% | |
| AACTAAAACTCTTCCAAAGA+AGG | - | chr3.2:51776981-51777000 | None:intergenic | 30.0% | |
| ACTGAAATATGAAATTGCAG+CGG | - | chr3.2:51778291-51778310 | None:intergenic | 30.0% | |
| AGTTGTTCAATGACAAAAGA+AGG | - | chr3.2:51776822-51776841 | None:intergenic | 30.0% | |
| CACAAAACAGATAGAATAGA+AGG | - | chr3.2:51777124-51777143 | None:intergenic | 30.0% | |
| CATACTTATTTCGAAAACAG+TGG | - | chr3.2:51776665-51776684 | None:intergenic | 30.0% | |
| CCACATGGAATAATAAGAAT+CGG | - | chr3.2:51777805-51777824 | None:intergenic | 30.0% | |
| CGGTCATTAAACATATTACA+AGG | - | chr3.2:51777785-51777804 | None:intergenic | 30.0% | |
| CTTGAGATCATATAGTTGAA+AGG | - | chr3.2:51778316-51778335 | None:intergenic | 30.0% | |
| GAGAGCCAAAAAAATAGAAT+TGG | - | chr3.2:51778387-51778406 | None:intergenic | 30.0% | |
| GATATAAATAACCAGTCAAG+AGG | + | chr3.2:51776343-51776362 | MS.gene05700:CDS | 30.0% | |
| GCAATATCATGAGATTTCAT+TGG | + | chr3.2:51778178-51778197 | MS.gene05700:intron | 30.0% | |
| GTGATATATGTACAACCATT+TGG | - | chr3.2:51779148-51779167 | None:intergenic | 30.0% | |
| GTTAAATTTACTTTGGACAC+TGG | + | chr3.2:51777256-51777275 | MS.gene05700:intron | 30.0% | |
| TGTGCAAATATGTTTATCTC+CGG | + | chr3.2:51777140-51777159 | MS.gene05700:intron | 30.0% | |
| TTCTTATTATTCCATGTGGT+TGG | + | chr3.2:51777806-51777825 | MS.gene05700:intron | 30.0% | |
| ! | AAGAAAGTTTGTTTGCTGAT+CGG | + | chr3.2:51777087-51777106 | MS.gene05700:CDS | 30.0% |
| ! | AGCTTTTCTCTAACTCTATT+AGG | + | chr3.2:51777840-51777859 | MS.gene05700:intron | 30.0% |
| ! | CGTGGACATAATTATTGTTT+TGG | + | chr3.2:51779172-51779191 | MS.gene05700:intron | 30.0% |
| ! | TGAAACTACACTAATTTTGC+CGG | - | chr3.2:51777431-51777450 | None:intergenic | 30.0% |
| AAGTATCATCTACTTGGGAA+TGG | - | chr3.2:51779364-51779383 | None:intergenic | 35.0% | |
| AGTAGTGCTGTAATTGATGA+TGG | + | chr3.2:51776778-51776797 | MS.gene05700:CDS | 35.0% | |
| ATCAGACACTTCATAGATGT+TGG | - | chr3.2:51776490-51776509 | None:intergenic | 35.0% | |
| ATTTGGATGGAAAACGGATA+GGG | - | chr3.2:51777926-51777945 | None:intergenic | 35.0% | |
| CCGATTCTTATTATTCCATG+TGG | + | chr3.2:51777802-51777821 | MS.gene05700:intron | 35.0% | |
| CTTAACACACTATCTCCTAT+TGG | + | chr3.2:51778829-51778848 | MS.gene05700:intron | 35.0% | |
| CTTGCAGGAAGAATTTCAAT+TGG | + | chr3.2:51777043-51777062 | MS.gene05700:intron | 35.0% | |
| GAAAATGGAAGTTGTCATCA+AGG | + | chr3.2:51779117-51779136 | MS.gene05700:intron | 35.0% | |
| GCATGATACAGTATTTCAGA+CGG | - | chr3.2:51776527-51776546 | None:intergenic | 35.0% | |
| GTCATGTTCTTCAAAAGTGA+CGG | - | chr3.2:51778718-51778737 | None:intergenic | 35.0% | |
| GTCATTGAACAACTTATGCA+TGG | + | chr3.2:51776828-51776847 | MS.gene05700:intron | 35.0% | |
| GTGCAAATATGTTTATCTCC+GGG | + | chr3.2:51777141-51777160 | MS.gene05700:intron | 35.0% | |
| TACCTCTGGTAAATGTTTGT+AGG | + | chr3.2:51777350-51777369 | MS.gene05700:intron | 35.0% | |
| TATACAGGTGAAACAAATGG+TGG | + | chr3.2:51778440-51778459 | MS.gene05700:intron | 35.0% | |
| TGTACATATATCACTACTCG+TGG | + | chr3.2:51779154-51779173 | MS.gene05700:intron | 35.0% | |
| TTACTTTGGACACTGGTATA+TGG | + | chr3.2:51777263-51777282 | MS.gene05700:intron | 35.0% | |
| TTGAACAACTTATGCATGGT+TGG | + | chr3.2:51776832-51776851 | MS.gene05700:intron | 35.0% | |
| TTGTAGTAAATCGTGTATCG+CGG | + | chr3.2:51777559-51777578 | MS.gene05700:intron | 35.0% | |
| TTTGTTCAACTTTGTACCTC+TGG | + | chr3.2:51777336-51777355 | MS.gene05700:intron | 35.0% | |
| ! | AGAAAGTTTGTTTGCTGATC+GGG | + | chr3.2:51777088-51777107 | MS.gene05700:CDS | 35.0% |
| ! | GAAGATCGAATTAGAGTGTT+TGG | + | chr3.2:51778885-51778904 | MS.gene05700:intron | 35.0% |
| ! | GCAAAACTAGTTTACACTGA+CGG | - | chr3.2:51778088-51778107 | None:intergenic | 35.0% |
| ! | GTAGTGCTGTAATTGATGAT+GGG | + | chr3.2:51776779-51776798 | MS.gene05700:CDS | 35.0% |
| ! | TCTCTCTCTCTCTATTGTTT+TGG | + | chr3.2:51779079-51779098 | MS.gene05700:intron | 35.0% |
| !! | AATTTTAGTGCTCATCTTGC+AGG | + | chr3.2:51777028-51777047 | MS.gene05700:intron | 35.0% |
| !! | TGATGATGGGTTGATTAACA+AGG | + | chr3.2:51776792-51776811 | MS.gene05700:CDS | 35.0% |
| !! | TTATCATCAATAGGGGCATT+TGG | - | chr3.2:51777943-51777962 | None:intergenic | 35.0% |
| !!! | AGCAGCAAGGTTTTATTGAA+AGG | + | chr3.2:51778334-51778353 | MS.gene05700:CDS | 35.0% |
| !!! | AGGTTTTATTGAAAGGCAAG+AGG | + | chr3.2:51778341-51778360 | MS.gene05700:CDS | 35.0% |
| !!! | AGTGTAAACTAGTTTTGCAC+TGG | + | chr3.2:51778090-51778109 | MS.gene05700:intron | 35.0% |
| !!! | TATTGTTTTGGACCAATGAG+AGG | + | chr3.2:51779091-51779110 | MS.gene05700:intron | 35.0% |
| AAGATCCTGAACTTCTTGCT+AGG | + | chr3.2:51776371-51776390 | MS.gene05700:CDS | 40.0% | |
| ACAAAGCACAATGGGATACT+AGG | + | chr3.2:51777880-51777899 | MS.gene05700:CDS | 40.0% | |
| ACCAATGAGAGGAGAGAAAA+TGG | + | chr3.2:51779102-51779121 | MS.gene05700:intron | 40.0% | |
| AGAAAAATCACTTTCCGGAC+CGG | + | chr3.2:51777723-51777742 | MS.gene05700:intron | 40.0% | |
| AGAGAGAGAGAGAGAGAAAA+AGG | - | chr3.2:51779006-51779025 | None:intergenic | 40.0% | |
| AGATCCTGAACTTCTTGCTA+GGG | + | chr3.2:51776372-51776391 | MS.gene05700:CDS | 40.0% | |
| AGCAGCTATAACAGTGCTAT+AGG | - | chr3.2:51777526-51777545 | None:intergenic | 40.0% | |
| ATCGTCCGATAGATTCATAC+CGG | - | chr3.2:51778484-51778503 | None:intergenic | 40.0% | |
| CAAGAAGTTCAGGATCTTCA+AGG | - | chr3.2:51776369-51776388 | None:intergenic | 40.0% | |
| CACCTACAAACATTTACCAG+AGG | - | chr3.2:51777355-51777374 | None:intergenic | 40.0% | |
| CATTTGGATGGAAAACGGAT+AGG | - | chr3.2:51777927-51777946 | None:intergenic | 40.0% | |
| CTATATGATCTCAAGCAGCA+AGG | + | chr3.2:51778321-51778340 | MS.gene05700:CDS | 40.0% | |
| GAAGCAGATACAAAGCATGA+TGG | + | chr3.2:51778649-51778668 | MS.gene05700:CDS | 40.0% | |
| GCAGCTATAACAGTGCTATA+GGG | - | chr3.2:51777525-51777544 | None:intergenic | 40.0% | |
| GGATTATTTGCAGACGTTTG+AGG | + | chr3.2:51778627-51778646 | MS.gene05700:intron | 40.0% | |
| GGGAATGGAATACAAAGCTT+GGG | - | chr3.2:51779349-51779368 | None:intergenic | 40.0% | |
| TAAAAATAACCGCGTAGTGC+TGG | - | chr3.2:51778130-51778149 | None:intergenic | 40.0% | |
| TACAAAGCTTGGGAATGTTG+TGG | - | chr3.2:51779339-51779358 | None:intergenic | 40.0% | |
| TAGCCAGTGTTGTCAAATAG+CGG | - | chr3.2:51777622-51777641 | None:intergenic | 40.0% | |
| TGGGAATGGAATACAAAGCT+TGG | - | chr3.2:51779350-51779369 | None:intergenic | 40.0% | |
| TTGCAGATCGCAGAAAATAG+TGG | + | chr3.2:51777487-51777506 | MS.gene05700:intron | 40.0% | |
| ! | GATCGAATTAGAGTGTTTGG+TGG | + | chr3.2:51778888-51778907 | MS.gene05700:intron | 40.0% |
| ! | GATTTTCATGTGTTTGGGCA+GGG | + | chr3.2:51779307-51779326 | MS.gene05700:intron | 40.0% |
| ! | TCCATTTTCTCTCCTCTCAT+TGG | - | chr3.2:51779106-51779125 | None:intergenic | 40.0% |
| ! | TGATTTTCATGTGTTTGGGC+AGG | + | chr3.2:51779306-51779325 | MS.gene05700:intron | 40.0% |
| !!! | AGTGGAGAAACCTTGTTTTG+CGG | + | chr3.2:51778689-51778708 | MS.gene05700:CDS | 40.0% |
| AAATAGCGGCTGTAGCGAAA+TGG | - | chr3.2:51777608-51777627 | None:intergenic | 45.0% | |
| AATCAGAATCCAGCACTACG+CGG | + | chr3.2:51778118-51778137 | MS.gene05700:intron | 45.0% | |
| AATGGTGGTTGCTACACTTG+CGG | + | chr3.2:51778455-51778474 | MS.gene05700:CDS | 45.0% | |
| AGTGCAAGTGACAGAAGAAC+AGG | - | chr3.2:51778538-51778557 | None:intergenic | 45.0% | |
| GCATGATGGCAAGATTGACA+AGG | + | chr3.2:51778663-51778682 | MS.gene05700:CDS | 45.0% | |
| GGAGTCCGGTATGAATCTAT+CGG | + | chr3.2:51778476-51778495 | MS.gene05700:CDS | 45.0% | |
| GTCATCAAGGTTGTCCCAAA+TGG | + | chr3.2:51779130-51779149 | MS.gene05700:intron | 45.0% | |
| GTGCAAGTGACAGAAGAACA+GGG | - | chr3.2:51778537-51778556 | None:intergenic | 45.0% | |
| TGATGGCAAGATTGACAAGG+AGG | + | chr3.2:51778666-51778685 | MS.gene05700:CDS | 45.0% | |
| TTGGACACTGGTATATGGTG+TGG | + | chr3.2:51777268-51777287 | MS.gene05700:intron | 45.0% | |
| !! | AGGGGCATTTGGATGGAAAA+CGG | - | chr3.2:51777932-51777951 | None:intergenic | 45.0% |
| !! | CATCAATAGGGGCATTTGGA+TGG | - | chr3.2:51777939-51777958 | None:intergenic | 45.0% |
| !!! | ATATTTTTCTTTTATTATTT+TGG | + | chr3.2:51777980-51777999 | MS.gene05700:intron | 5.0% |
| !!! | TATTTTTCTTTTATTATTTT+GGG | + | chr3.2:51777981-51778000 | MS.gene05700:intron | 5.0% |
| CAGCCGCTATTTGACAACAC+TGG | + | chr3.2:51777616-51777635 | MS.gene05700:intron | 50.0% | |
| CGAGTGAGATACCAACCACA+TGG | - | chr3.2:51777820-51777839 | None:intergenic | 50.0% | |
| GATCTTCAAGGCCTCTTGAC+TGG | - | chr3.2:51776357-51776376 | None:intergenic | 50.0% | |
| GCAAGATTGACAAGGAGGAG+TGG | + | chr3.2:51778671-51778690 | MS.gene05700:CDS | 50.0% | |
| GTCTCCCTAGCAAGAAGTTC+AGG | - | chr3.2:51776379-51776398 | None:intergenic | 50.0% | |
| ! | GCGTAGTGCTGGATTCTGAT+TGG | - | chr3.2:51778119-51778138 | None:intergenic | 50.0% |
| GTTGCTACACTTGCGGAGTC+CGG | + | chr3.2:51778462-51778481 | MS.gene05700:CDS | 55.0% | |
| !! | GTGACGGATGCCGCAAAACA+AGG | - | chr3.2:51778702-51778721 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 51776280 | 51779385 | 51776280 | ID=MS.gene05700 |
| chr3.2 | mRNA | 51776280 | 51779385 | 51776280 | ID=MS.gene05700.t1;Parent=MS.gene05700 |
| chr3.2 | exon | 51776280 | 51776403 | 51776280 | ID=MS.gene05700.t1.exon1;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51776280 | 51776403 | 51776280 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51776731 | 51776813 | 51776731 | ID=MS.gene05700.t1.exon2;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51776731 | 51776813 | 51776731 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51777050 | 51777109 | 51777050 | ID=MS.gene05700.t1.exon3;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51777050 | 51777109 | 51777050 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51777862 | 51777970 | 51777862 | ID=MS.gene05700.t1.exon4;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51777862 | 51777970 | 51777862 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51778310 | 51778362 | 51778310 | ID=MS.gene05700.t1.exon5;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51778310 | 51778362 | 51778310 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51778447 | 51778527 | 51778447 | ID=MS.gene05700.t1.exon6;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51778447 | 51778527 | 51778447 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51778640 | 51778752 | 51778640 | ID=MS.gene05700.t1.exon7;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51778640 | 51778752 | 51778640 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| chr3.2 | exon | 51779328 | 51779385 | 51779328 | ID=MS.gene05700.t1.exon8;Parent=MS.gene05700.t1 |
| chr3.2 | CDS | 51779328 | 51779385 | 51779328 | ID=cds.MS.gene05700.t1;Parent=MS.gene05700.t1 |
| Gene Sequence |
| Protein sequence |
