Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81289.t1 | XP_024639813.1 | 100 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 4.50E-122 | 447.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81289.t1 | Q75LU8 | 92.9 | 226 | 15 | 1 | 1 | 226 | 1 | 225 | 3.5e-115 | 415.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81289.t1 | B7FN44 | 100.0 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 3.3e-122 | 447.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81289 | MS.gene05700 | PPI |
| MS.gene81289 | MS.gene070285 | PPI |
| MS.gene81289 | MS.gene04148 | PPI |
| MS.gene81289 | MS.gene04347 | PPI |
| MS.gene04347 | MS.gene81289 | PPI |
| MS.gene81289 | MS.gene38263 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81289.t1 | MTR_5g096420 | 100.000 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 4.82e-168 | 462 |
| MS.gene81289.t1 | MTR_3g060730 | 93.363 | 226 | 15 | 0 | 1 | 226 | 1 | 226 | 2.89e-157 | 434 |
| MS.gene81289.t1 | MTR_4g134250 | 89.868 | 227 | 22 | 1 | 1 | 226 | 1 | 227 | 1.99e-151 | 420 |
| MS.gene81289.t1 | MTR_3g060730 | 98.913 | 184 | 2 | 0 | 43 | 226 | 5 | 188 | 1.09e-132 | 371 |
| MS.gene81289.t1 | MTR_2g027440 | 65.351 | 228 | 76 | 1 | 1 | 225 | 1 | 228 | 1.53e-110 | 317 |
| MS.gene81289.t1 | MTR_2g027500 | 68.349 | 218 | 68 | 1 | 9 | 225 | 6 | 223 | 3.67e-108 | 310 |
| MS.gene81289.t1 | MTR_2g027480 | 64.912 | 228 | 77 | 1 | 1 | 225 | 1 | 228 | 4.71e-108 | 310 |
| MS.gene81289.t1 | MTR_2g027520 | 63.203 | 231 | 80 | 1 | 1 | 226 | 1 | 231 | 6.35e-103 | 298 |
| MS.gene81289.t1 | MTR_4g099210 | 63.333 | 210 | 77 | 0 | 16 | 225 | 1 | 210 | 1.81e-94 | 275 |
| MS.gene81289.t1 | MTR_3g091440 | 60.096 | 208 | 83 | 0 | 19 | 226 | 5 | 212 | 2.00e-92 | 271 |
| MS.gene81289.t1 | MTR_1g016430 | 65.789 | 190 | 65 | 0 | 36 | 225 | 60 | 249 | 8.59e-88 | 259 |
| MS.gene81289.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 1 | 180 | 2.48e-85 | 251 |
| MS.gene81289.t1 | MTR_3g091440 | 61.413 | 184 | 71 | 0 | 43 | 226 | 30 | 213 | 2.08e-84 | 250 |
| MS.gene81289.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 99 | 278 | 6.15e-84 | 251 |
| MS.gene81289.t1 | MTR_8g099575 | 54.762 | 210 | 95 | 0 | 16 | 225 | 1 | 210 | 9.30e-82 | 243 |
| MS.gene81289.t1 | MTR_8g099570 | 57.143 | 196 | 84 | 0 | 31 | 226 | 58 | 253 | 1.50e-79 | 239 |
| MS.gene81289.t1 | MTR_8g016170 | 58.947 | 190 | 78 | 0 | 36 | 225 | 66 | 255 | 1.58e-76 | 231 |
| MS.gene81289.t1 | MTR_8g027620 | 55.612 | 196 | 87 | 0 | 31 | 226 | 39 | 234 | 1.03e-75 | 231 |
| MS.gene81289.t1 | MTR_5g013560 | 60.513 | 195 | 66 | 1 | 31 | 225 | 15 | 198 | 1.15e-74 | 224 |
| MS.gene81289.t1 | MTR_8g016170 | 58.960 | 173 | 71 | 0 | 36 | 208 | 47 | 219 | 3.13e-68 | 209 |
| MS.gene81289.t1 | MTR_3g091440 | 60.131 | 153 | 61 | 0 | 19 | 171 | 5 | 157 | 1.60e-63 | 195 |
| MS.gene81289.t1 | MTR_4g113505 | 48.913 | 184 | 94 | 0 | 42 | 225 | 6 | 189 | 6.41e-62 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81289.t1 | AT5G55990 | 89.823 | 226 | 23 | 0 | 1 | 226 | 1 | 226 | 6.72e-150 | 416 |
| MS.gene81289.t1 | AT5G55990 | 89.823 | 226 | 23 | 0 | 1 | 226 | 1 | 226 | 6.72e-150 | 416 |
| MS.gene81289.t1 | AT4G26570 | 88.938 | 226 | 25 | 0 | 1 | 226 | 1 | 226 | 6.80e-150 | 416 |
| MS.gene81289.t1 | AT4G26570 | 87.391 | 230 | 25 | 1 | 1 | 226 | 1 | 230 | 8.03e-148 | 411 |
| MS.gene81289.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 2.81e-112 | 321 |
| MS.gene81289.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 2.81e-112 | 321 |
| MS.gene81289.t1 | AT5G47100 | 68.205 | 195 | 62 | 0 | 31 | 225 | 16 | 210 | 2.76e-95 | 277 |
| MS.gene81289.t1 | AT4G17615 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 1.74e-94 | 275 |
| MS.gene81289.t1 | AT4G17615 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 1.74e-94 | 275 |
| MS.gene81289.t1 | AT4G17615 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 1.74e-94 | 275 |
| MS.gene81289.t1 | AT4G26560 | 69.271 | 192 | 46 | 2 | 48 | 226 | 23 | 214 | 4.48e-93 | 272 |
| MS.gene81289.t1 | AT5G24270 | 62.176 | 193 | 73 | 0 | 26 | 218 | 15 | 207 | 9.40e-88 | 259 |
| MS.gene81289.t1 | AT5G24270 | 62.176 | 193 | 73 | 0 | 26 | 218 | 15 | 207 | 9.40e-88 | 259 |
| MS.gene81289.t1 | AT5G24270 | 62.176 | 193 | 73 | 0 | 26 | 218 | 15 | 207 | 9.40e-88 | 259 |
| MS.gene81289.t1 | AT4G33000 | 59.817 | 219 | 87 | 1 | 8 | 225 | 28 | 246 | 1.73e-86 | 256 |
| MS.gene81289.t1 | AT4G33000 | 59.817 | 219 | 87 | 1 | 8 | 225 | 38 | 256 | 2.60e-86 | 256 |
| MS.gene81289.t1 | AT5G24270 | 62.570 | 179 | 67 | 0 | 40 | 218 | 4 | 182 | 3.21e-82 | 244 |
| MS.gene81289.t1 | AT4G17615 | 62.105 | 190 | 72 | 0 | 25 | 214 | 10 | 199 | 4.08e-82 | 245 |
| MS.gene81289.t1 | AT1G64480 | 53.555 | 211 | 98 | 0 | 15 | 225 | 4 | 214 | 1.32e-79 | 238 |
| MS.gene81289.t1 | AT1G64480 | 53.555 | 211 | 98 | 0 | 15 | 225 | 4 | 214 | 1.32e-79 | 238 |
| MS.gene81289.t1 | AT1G64480 | 53.555 | 211 | 98 | 0 | 15 | 225 | 4 | 214 | 1.32e-79 | 238 |
| MS.gene81289.t1 | AT1G64480 | 53.886 | 193 | 89 | 0 | 16 | 208 | 5 | 197 | 4.47e-72 | 218 |
| MS.gene81289.t1 | AT4G17615 | 63.057 | 157 | 58 | 0 | 69 | 225 | 12 | 168 | 3.12e-71 | 215 |
| MS.gene81289.t1 | AT5G24270 | 59.740 | 154 | 62 | 0 | 65 | 218 | 7 | 160 | 5.35e-66 | 202 |
| MS.gene81289.t1 | AT5G47100 | 65.493 | 142 | 49 | 0 | 31 | 172 | 16 | 157 | 9.03e-64 | 196 |
| MS.gene81289.t1 | AT4G01420 | 48.936 | 188 | 96 | 0 | 31 | 218 | 15 | 202 | 1.46e-60 | 189 |
| MS.gene81289.t1 | AT4G33000 | 58.788 | 165 | 67 | 1 | 8 | 171 | 28 | 192 | 1.46e-57 | 181 |
| MS.gene81289.t1 | AT4G33000 | 58.788 | 165 | 67 | 1 | 8 | 171 | 28 | 192 | 1.46e-57 | 181 |
| MS.gene81289.t1 | AT4G33000 | 59.146 | 164 | 66 | 1 | 8 | 170 | 28 | 191 | 1.69e-57 | 181 |
| MS.gene81289.t1 | AT4G01420 | 48.876 | 178 | 91 | 0 | 31 | 208 | 15 | 192 | 2.49e-56 | 178 |
| MS.gene81289.t1 | AT4G33000 | 56.557 | 122 | 52 | 1 | 11 | 131 | 31 | 152 | 1.89e-36 | 125 |
Find 44 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCCCTCGCAAGAATTTC+AGG | 0.186318 | 5.2:-80841502 | None:intergenic |
| ACATGACCCTTCAGTATCTA+AGG | 0.349217 | 5.2:+80843519 | MS.gene81289:CDS |
| GTTGCTACGCTTGCTGAATC+TGG | 0.371351 | 5.2:+80843241 | MS.gene81289:CDS |
| AGAGAGTCTGTTTGCCGATC+GGG | 0.391018 | 5.2:+80842146 | MS.gene81289:CDS |
| ACAAAGCACAATGGGATACT+TGG | 0.417498 | 5.2:+80842867 | MS.gene81289:CDS |
| GACTTATATAAGCAGACAAC+AGG | 0.455103 | 5.2:+80841469 | MS.gene81289:CDS |
| CATCAATAGGGGCATTTGGA+TGG | 0.468852 | 5.2:-80842923 | None:intergenic |
| TTTGCAGGAAGAGTTTCAAT+TGG | 0.472411 | 5.2:+80842101 | MS.gene81289:intron |
| TGTGAATGGAATACAAAGCT+TGG | 0.474084 | 5.2:-80843737 | None:intergenic |
| GATGGAAAACGGAGAGGGCA+CGG | 0.478888 | 5.2:-80842905 | None:intergenic |
| ATGTCACAACATTGCAATAG+AGG | 0.481052 | 5.2:-80841445 | None:intergenic |
| TTATGTAAAGGTGAAACAAA+TGG | 0.482572 | 5.2:+80843216 | MS.gene81289:intron |
| ACTGTATGATCTCAAGCAGC+AGG | 0.484215 | 5.2:+80843089 | MS.gene81289:CDS |
| TGTTTGATACAAAGCACAAT+GGG | 0.488671 | 5.2:+80842859 | MS.gene81289:CDS |
| AAGTATCGTCTACTTGTGAA+TGG | 0.491299 | 5.2:-80843751 | None:intergenic |
| CACAAGTAGACGATACTTGA+AGG | 0.500724 | 5.2:+80843756 | MS.gene81289:CDS |
| AGCAGTGCGGTGATTGATGA+TGG | 0.501327 | 5.2:+80841831 | MS.gene81289:CDS |
| GTGAATGGAATACAAAGCTT+GGG | 0.504891 | 5.2:-80843736 | None:intergenic |
| ATGGAAAACGGAGAGGGCAC+GGG | 0.505764 | 5.2:-80842904 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.521446 | 5.2:-80843503 | None:intergenic |
| TAAATTACCTTAGATACTGA+AGG | 0.529850 | 5.2:-80843526 | None:intergenic |
| ATCATGTTGCAGTGCATAGA+GGG | 0.537202 | 5.2:+80841403 | None:intergenic |
| ATGATGGATGGCGCAAAACA+AGG | 0.543576 | 5.2:-80843487 | None:intergenic |
| AGGGGCATTTGGATGGAAAA+CGG | 0.546018 | 5.2:-80842916 | None:intergenic |
| AAGAGAGTCTGTTTGCCGAT+CGG | 0.550466 | 5.2:+80842145 | MS.gene81289:CDS |
| CTTGAGATCATACAGTTGAA+AGG | 0.567690 | 5.2:-80843082 | None:intergenic |
| GCAAGATTGACAAGGAGGAA+TGG | 0.567894 | 5.2:+80843459 | MS.gene81289:CDS |
| ATTTGGATGGAAAACGGAGA+GGG | 0.578590 | 5.2:-80842910 | None:intergenic |
| AGATCCTGAAATTCTTGCGA+GGG | 0.585224 | 5.2:+80841498 | MS.gene81289:CDS |
| TTGTTTGATACAAAGCACAA+TGG | 0.589590 | 5.2:+80842858 | MS.gene81289:CDS |
| TATCATGTTGCAGTGCATAG+AGG | 0.591820 | 5.2:+80841402 | None:intergenic |
| AAGATCCTGAAATTCTTGCG+AGG | 0.599900 | 5.2:+80841497 | MS.gene81289:CDS |
| AAATTACCTTAGATACTGAA+GGG | 0.626563 | 5.2:-80843525 | None:intergenic |
| TACAAAGCTTGGGAACGTTG+TGG | 0.634535 | 5.2:-80843726 | None:intergenic |
| CTGTATGATCTCAAGCAGCA+GGG | 0.642917 | 5.2:+80843090 | MS.gene81289:CDS |
| GCAGTGCGGTGATTGATGAT+GGG | 0.644066 | 5.2:+80841832 | MS.gene81289:CDS |
| TGTTCTTGAGTAATGATGGA+TGG | 0.645982 | 5.2:-80843499 | None:intergenic |
| GAAGCGGATACGAAGCATGA+CGG | 0.656838 | 5.2:+80843437 | MS.gene81289:CDS |
| ATAGAAATACCATACCCGAT+CGG | 0.662123 | 5.2:-80842160 | None:intergenic |
| CATTTGGATGGAAAACGGAG+AGG | 0.669040 | 5.2:-80842911 | None:intergenic |
| TATTGAGAGTATAATTGACA+AGG | 0.673907 | 5.2:+80843285 | MS.gene81289:CDS |
| TGATGATGGGCTGATCAACA+AGG | 0.685091 | 5.2:+80841845 | MS.gene81289:CDS |
| GCATGACGGCAAGATTGACA+AGG | 0.686105 | 5.2:+80843451 | MS.gene81289:CDS |
| TGACGGCAAGATTGACAAGG+AGG | 0.702524 | 5.2:+80843454 | MS.gene81289:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTTATAGTATTAAATT+TGG | - | chr5.2:80843607-80843626 | None:intergenic | 10.0% |
| !! | TTTAATGTTAAAACAAAAAA+GGG | - | chr5.2:80842691-80842710 | None:intergenic | 10.0% |
| !!! | ATGACAATTTTTTTTTTTTT+AGG | + | chr5.2:80842460-80842479 | MS.gene81289:intron | 10.0% |
| !!! | GTATTATATAGTTTTAATTT+TGG | - | chr5.2:80843012-80843031 | None:intergenic | 10.0% |
| !!! | TGACAATTTTTTTTTTTTTA+GGG | + | chr5.2:80842461-80842480 | MS.gene81289:intron | 10.0% |
| !!! | TTTTAATGTTAAAACAAAAA+AGG | - | chr5.2:80842692-80842711 | None:intergenic | 10.0% |
| !! | AATGTTAAAAAAACTCATTT+CGG | - | chr5.2:80842429-80842448 | None:intergenic | 15.0% |
| !! | AGAAAAATAAGATTTAAAGA+AGG | - | chr5.2:80843143-80843162 | None:intergenic | 15.0% |
| !! | ATTTACAATGGTAATTAATA+AGG | - | chr5.2:80842734-80842753 | None:intergenic | 15.0% |
| !!! | AAATGATTATACATGTTTTT+TGG | - | chr5.2:80841945-80841964 | None:intergenic | 15.0% |
| !!! | ATGATTTTGATAAAGAATTA+AGG | - | chr5.2:80842628-80842647 | None:intergenic | 15.0% |
| !!! | GACAATTTTTTTTTTTTTAG+GGG | + | chr5.2:80842462-80842481 | MS.gene81289:intron | 15.0% |
| !!! | TGAAATTTTATATTGAACTA+GGG | + | chr5.2:80842600-80842619 | MS.gene81289:intron | 15.0% |
| !!! | TTTATTTTGTATGTCATATT+AGG | - | chr5.2:80842303-80842322 | None:intergenic | 15.0% |
| !! | AGTTCAATATAAAATTTCAC+AGG | - | chr5.2:80842599-80842618 | None:intergenic | 20.0% |
| !! | ATACAAAATAAACTTTGTCT+CGG | + | chr5.2:80842311-80842330 | MS.gene81289:intron | 20.0% |
| !! | ATTAATTTCTTCAATCAGAA+AGG | + | chr5.2:80842001-80842020 | MS.gene81289:intron | 20.0% |
| !! | ATTTGGAAATAAATACACAT+AGG | + | chr5.2:80841721-80841740 | MS.gene81289:intron | 20.0% |
| !!! | ATATTACATGGTTTTAGTTT+TGG | - | chr5.2:80843049-80843068 | None:intergenic | 20.0% |
| !!! | ATTTGAAGCAATATACAATA+TGG | - | chr5.2:80842795-80842814 | None:intergenic | 20.0% |
| !!! | CATGTCATATTTTATAATGT+TGG | - | chr5.2:80842029-80842048 | None:intergenic | 20.0% |
| !!! | GTGAAATTTTATATTGAACT+AGG | + | chr5.2:80842599-80842618 | MS.gene81289:intron | 20.0% |
| !!! | GTGGATATAATAAATTTTGT+TGG | + | chr5.2:80841903-80841922 | MS.gene81289:intron | 20.0% |
| !!! | TGTCAGAAAGTATAATTTAT+TGG | - | chr5.2:80841972-80841991 | None:intergenic | 20.0% |
| ! | AAATTACCTTAGATACTGAA+GGG | - | chr5.2:80843528-80843547 | None:intergenic | 25.0% |
| ! | AACTGAAACAAGATATTACA+TGG | - | chr5.2:80843061-80843080 | None:intergenic | 25.0% |
| ! | ATCAAATACAACAATAACCA+AGG | + | chr5.2:80842267-80842286 | MS.gene81289:intron | 25.0% |
| ! | CAATGGTAATTAATAAGGTA+TGG | - | chr5.2:80842729-80842748 | None:intergenic | 25.0% |
| ! | GATTCAAAGTAAATGTAACA+AGG | + | chr5.2:80842543-80842562 | MS.gene81289:intron | 25.0% |
| ! | TAAATTACCTTAGATACTGA+AGG | - | chr5.2:80843529-80843548 | None:intergenic | 25.0% |
| ! | TATCACTATAGACTGATTAT+AGG | + | chr5.2:80843625-80843644 | MS.gene81289:intron | 25.0% |
| ! | TATTAATATGCATCATTTGC+AGG | + | chr5.2:80842086-80842105 | MS.gene81289:intron | 25.0% |
| ! | TGGTAAATTGAAAAGAAGTA+AGG | - | chr5.2:80842992-80843011 | None:intergenic | 25.0% |
| ! | TTATGTAAAGGTGAAACAAA+TGG | + | chr5.2:80843216-80843235 | MS.gene81289:intron | 25.0% |
| ! | TTGGTTATTGTTGTATTTGA+TGG | - | chr5.2:80842268-80842287 | None:intergenic | 25.0% |
| ! | TTTACATAAAAAGAAACCGA+AGG | - | chr5.2:80843205-80843224 | None:intergenic | 25.0% |
| !! | ACTCAATCTTTTCATCAATA+GGG | - | chr5.2:80842938-80842957 | None:intergenic | 25.0% |
| !! | TATTGAGAGTATAATTGACA+AGG | + | chr5.2:80843285-80843304 | MS.gene81289:CDS | 25.0% |
| !! | TGTATGTTACTTCAATTCTT+TGG | + | chr5.2:80842957-80842976 | MS.gene81289:intron | 25.0% |
| !! | TTCGGTTTCTTTTTATGTAA+AGG | + | chr5.2:80843204-80843223 | MS.gene81289:intron | 25.0% |
| !!! | ACTTTTTGATTTTGAAAGCA+TGG | + | chr5.2:80841642-80841661 | MS.gene81289:intron | 25.0% |
| !!! | ATGCTCTTGTATTTTATTTG+TGG | + | chr5.2:80841675-80841694 | MS.gene81289:intron | 25.0% |
| !!! | TAAGTTTTTGCTTCTTGTTT+AGG | + | chr5.2:80843163-80843182 | MS.gene81289:intron | 25.0% |
| !!! | TTAGTTTTAACATTGGGTTT+CGG | + | chr5.2:80843395-80843414 | MS.gene81289:intron | 25.0% |
| !!! | TTTTTTTTAGGGGAATCATA+TGG | + | chr5.2:80842472-80842491 | MS.gene81289:intron | 25.0% |
| AAAACAAAAAAGGGAACATG+TGG | - | chr5.2:80842682-80842701 | None:intergenic | 30.0% | |
| AAACAAAAAAGGGAACATGT+GGG | - | chr5.2:80842681-80842700 | None:intergenic | 30.0% | |
| ACTCATTTCAGTTAACTTTG+TGG | - | chr5.2:80842384-80842403 | None:intergenic | 30.0% | |
| AGAAGGAATAGCATTTACAA+TGG | - | chr5.2:80842746-80842765 | None:intergenic | 30.0% | |
| CTTGAAACAGAAAAACAGAT+TGG | - | chr5.2:80843358-80843377 | None:intergenic | 30.0% | |
| GAAAGGTCGTAATCTTAAAA+GGG | - | chr5.2:80843321-80843340 | None:intergenic | 30.0% | |
| GTGGGAAAACTTATAATTGA+AGG | - | chr5.2:80842663-80842682 | None:intergenic | 30.0% | |
| GTTACATTTACTTTGAATCG+TGG | - | chr5.2:80842542-80842561 | None:intergenic | 30.0% | |
| TAAGAATAACATGTGAGAAG+AGG | - | chr5.2:80842511-80842530 | None:intergenic | 30.0% | |
| TGTTTGATACAAAGCACAAT+GGG | + | chr5.2:80842859-80842878 | MS.gene81289:CDS | 30.0% | |
| TTCAAGAAGTAACGAAAACA+CGG | + | chr5.2:80843372-80843391 | MS.gene81289:intron | 30.0% | |
| TTGTGGTAGTAAAAAGAAGA+CGG | - | chr5.2:80842367-80842386 | None:intergenic | 30.0% | |
| TTGTTTGATACAAAGCACAA+TGG | + | chr5.2:80842858-80842877 | MS.gene81289:CDS | 30.0% | |
| ! | CACTCAATCTTTTCATCAAT+AGG | - | chr5.2:80842939-80842958 | None:intergenic | 30.0% |
| ! | CTCAATCTTTTCATCAATAG+GGG | - | chr5.2:80842937-80842956 | None:intergenic | 30.0% |
| ! | TTTGTTTCTCTGATCAGATT+AGG | + | chr5.2:80842229-80842248 | MS.gene81289:intron | 30.0% |
| !! | CCTTTTTCATGTGTTGAATA+GGG | + | chr5.2:80843697-80843716 | MS.gene81289:intron | 30.0% |
| !! | TATTAGGTTGAAATAAGCCT+TGG | - | chr5.2:80842287-80842306 | None:intergenic | 30.0% |
| !! | TCCTTTTTCATGTGTTGAAT+AGG | + | chr5.2:80843696-80843715 | MS.gene81289:intron | 30.0% |
| !!! | AACACGGTTAGTTTTAACAT+TGG | + | chr5.2:80843388-80843407 | MS.gene81289:intron | 30.0% |
| !!! | ACACGGTTAGTTTTAACATT+GGG | + | chr5.2:80843389-80843408 | MS.gene81289:intron | 30.0% |
| !!! | CATGTTTTTTGGCATTGAAA+AGG | - | chr5.2:80841934-80841953 | None:intergenic | 30.0% |
| AGTAGTCATGAAAACAAGAG+AGG | - | chr5.2:80842572-80842591 | None:intergenic | 35.0% | |
| ATAGAAATACCATACCCGAT+CGG | - | chr5.2:80842163-80842182 | None:intergenic | 35.0% | |
| ATCTGACATGAGCTTATTTC+TGG | + | chr5.2:80842822-80842841 | MS.gene81289:intron | 35.0% | |
| ATGTCACAACATTGCAATAG+AGG | - | chr5.2:80841448-80841467 | None:intergenic | 35.0% | |
| CAGATTGGTATATATGCTAG+AGG | - | chr5.2:80843343-80843362 | None:intergenic | 35.0% | |
| CCCTATTCAACACATGAAAA+AGG | - | chr5.2:80843700-80843719 | None:intergenic | 35.0% | |
| CTTGAGATCATACAGTTGAA+AGG | - | chr5.2:80843085-80843104 | None:intergenic | 35.0% | |
| GACTTATATAAGCAGACAAC+AGG | + | chr5.2:80841469-80841488 | MS.gene81289:CDS | 35.0% | |
| GGAAAGGTCGTAATCTTAAA+AGG | - | chr5.2:80843322-80843341 | None:intergenic | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr5.2:80843506-80843525 | None:intergenic | 35.0% | |
| GTCGTAATCTTAAAAGGGTT+GGG | - | chr5.2:80843316-80843335 | None:intergenic | 35.0% | |
| GTGAATGGAATACAAAGCTT+GGG | - | chr5.2:80843739-80843758 | None:intergenic | 35.0% | |
| TGGTATATATGCTAGAGGAA+AGG | - | chr5.2:80843338-80843357 | None:intergenic | 35.0% | |
| TGTGAATGGAATACAAAGCT+TGG | - | chr5.2:80843740-80843759 | None:intergenic | 35.0% | |
| TGTGGTAGTAAAAAGAAGAC+GGG | - | chr5.2:80842366-80842385 | None:intergenic | 35.0% | |
| TTACCTCTCACACTACTATT+TGG | + | chr5.2:80841704-80841723 | MS.gene81289:intron | 35.0% | |
| TTTCCAAATAGTAGTGTGAG+AGG | - | chr5.2:80841710-80841729 | None:intergenic | 35.0% | |
| TTTGCAGGAAGAGTTTCAAT+TGG | + | chr5.2:80842101-80842120 | MS.gene81289:intron | 35.0% | |
| ! | AAGAGTGCATAGACATAAGT+TGG | - | chr5.2:80843570-80843589 | None:intergenic | 35.0% |
| ! | AAGTATCGTCTACTTGTGAA+TGG | - | chr5.2:80843754-80843773 | None:intergenic | 35.0% |
| ! | ATTGTTGTATTTGATGGCCT+TGG | - | chr5.2:80842262-80842281 | None:intergenic | 35.0% |
| ! | CTCATTTCGGTTTAACTTTG+TGG | - | chr5.2:80842416-80842435 | None:intergenic | 35.0% |
| ! | CTTTAAAAAGATCAGCAGTG+CGG | + | chr5.2:80841818-80841837 | MS.gene81289:CDS | 35.0% |
| ! | TCTGACATGAGCTTATTTCT+GGG | + | chr5.2:80842823-80842842 | MS.gene81289:intron | 35.0% |
| ! | TGTTCTTGAGTAATGATGGA+TGG | - | chr5.2:80843502-80843521 | None:intergenic | 35.0% |
| ! | TTGTTGTATTTGATGGCCTT+GGG | - | chr5.2:80842261-80842280 | None:intergenic | 35.0% |
| !!! | GGGTTTTATTGAAAGACAAG+AGG | + | chr5.2:80843110-80843129 | MS.gene81289:CDS | 35.0% |
| !!! | TTTTCATCAATAGGGGCATT+TGG | - | chr5.2:80842930-80842949 | None:intergenic | 35.0% |
| AAGATCCTGAAATTCTTGCG+AGG | + | chr5.2:80841497-80841516 | MS.gene81289:CDS | 40.0% | |
| ACAAAGCACAATGGGATACT+TGG | + | chr5.2:80842867-80842886 | MS.gene81289:CDS | 40.0% | |
| ACATGACCCTTCAGTATCTA+AGG | + | chr5.2:80843519-80843538 | MS.gene81289:CDS | 40.0% | |
| AGATCCTGAAATTCTTGCGA+GGG | + | chr5.2:80841498-80841517 | MS.gene81289:CDS | 40.0% | |
| ATTTGGATGGAAAACGGAGA+GGG | - | chr5.2:80842913-80842932 | None:intergenic | 40.0% | |
| CAATACATGCACATGTTGCA+AGG | - | chr5.2:80842770-80842789 | None:intergenic | 40.0% | |
| CTTGCAACATGTGCATGTAT+TGG | + | chr5.2:80842768-80842787 | MS.gene81289:intron | 40.0% | |
| GCTTCATTACTGACAACTTG+TGG | + | chr5.2:80841877-80841896 | MS.gene81289:intron | 40.0% | |
| GGTCGTAATCTTAAAAGGGT+TGG | - | chr5.2:80843317-80843336 | None:intergenic | 40.0% | |
| TACTGACAACTTGTGGTTTG+TGG | + | chr5.2:80841884-80841903 | MS.gene81289:intron | 40.0% | |
| ! | ACAAGCCTGATTTGTACCTT+CGG | + | chr5.2:80843186-80843205 | MS.gene81289:intron | 40.0% |
| ! | AGAAACCGAAGGTACAAATC+AGG | - | chr5.2:80843194-80843213 | None:intergenic | 40.0% |
| !! | ACATGAGCTTATTTCTGGGT+AGG | + | chr5.2:80842827-80842846 | MS.gene81289:intron | 40.0% |
| !! | CGGATTTGTTCAGACTTTTG+AGG | + | chr5.2:80843415-80843434 | MS.gene81289:intron | 40.0% |
| !! | TGTTCAGACTTTTGAGGAAG+CGG | + | chr5.2:80843421-80843440 | MS.gene81289:intron | 40.0% |
| AAGAGAGTCTGTTTGCCGAT+CGG | + | chr5.2:80842145-80842164 | MS.gene81289:CDS | 45.0% | |
| ACTGTATGATCTCAAGCAGC+AGG | + | chr5.2:80843089-80843108 | MS.gene81289:CDS | 45.0% | |
| CATTTGGATGGAAAACGGAG+AGG | - | chr5.2:80842914-80842933 | None:intergenic | 45.0% | |
| CTGTATGATCTCAAGCAGCA+GGG | + | chr5.2:80843090-80843109 | MS.gene81289:CDS | 45.0% | |
| GCAAGATTGACAAGGAGGAA+TGG | + | chr5.2:80843459-80843478 | MS.gene81289:CDS | 45.0% | |
| TACAAAGCTTGGGAACGTTG+TGG | - | chr5.2:80843729-80843748 | None:intergenic | 45.0% | |
| TCTCTGATCAGATTAGGCCA+AGG | + | chr5.2:80842235-80842254 | MS.gene81289:intron | 45.0% | |
| TGCACATGTTGCAAGGAAGA+AGG | - | chr5.2:80842763-80842782 | None:intergenic | 45.0% | |
| !! | AGGGGCATTTGGATGGAAAA+CGG | - | chr5.2:80842919-80842938 | None:intergenic | 45.0% |
| !! | ATGATGGATGGCGCAAAACA+AGG | - | chr5.2:80843490-80843509 | None:intergenic | 45.0% |
| !! | CATCAATAGGGGCATTTGGA+TGG | - | chr5.2:80842926-80842945 | None:intergenic | 45.0% |
| !! | TGATGATGGGCTGATCAACA+AGG | + | chr5.2:80841845-80841864 | MS.gene81289:CDS | 45.0% |
| !! | ATATTAATAATTAATATTGT+AGG | - | chr5.2:80842075-80842094 | None:intergenic | 5.0% |
| !!! | ATTTTTTCATTTTATATTTT+TGG | + | chr5.2:80843661-80843680 | MS.gene81289:intron | 5.0% |
| AGAGAGTCTGTTTGCCGATC+GGG | + | chr5.2:80842146-80842165 | MS.gene81289:CDS | 50.0% | |
| AGCAGTGCGGTGATTGATGA+TGG | + | chr5.2:80841831-80841850 | MS.gene81289:CDS | 50.0% | |
| GAAGCGGATACGAAGCATGA+CGG | + | chr5.2:80843437-80843456 | MS.gene81289:CDS | 50.0% | |
| GCATGACGGCAAGATTGACA+AGG | + | chr5.2:80843451-80843470 | MS.gene81289:CDS | 50.0% | |
| GTCTCCCTCGCAAGAATTTC+AGG | - | chr5.2:80841505-80841524 | None:intergenic | 50.0% | |
| TGACGGCAAGATTGACAAGG+AGG | + | chr5.2:80843454-80843473 | MS.gene81289:CDS | 50.0% | |
| ! | GCAGTGCGGTGATTGATGAT+GGG | + | chr5.2:80841832-80841851 | MS.gene81289:CDS | 50.0% |
| ! | GTTGCTACGCTTGCTGAATC+TGG | + | chr5.2:80843241-80843260 | MS.gene81289:CDS | 50.0% |
| ! | TATTTGATGGCCTTGGGCCT+TGG | - | chr5.2:80842255-80842274 | None:intergenic | 50.0% |
| GATGGAAAACGGAGAGGGCA+CGG | - | chr5.2:80842908-80842927 | None:intergenic | 55.0% | |
| GTCTGTTTGCCGATCGGGTA+TGG | + | chr5.2:80842151-80842170 | MS.gene81289:intron | 55.0% | |
| TCAGATTAGGCCAAGGCCCA+AGG | + | chr5.2:80842242-80842261 | MS.gene81289:intron | 55.0% | |
| ! | ATGGAAAACGGAGAGGGCAC+GGG | - | chr5.2:80842907-80842926 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80841406 | 80843775 | 80841406 | ID=MS.gene81289 |
| chr5.2 | mRNA | 80841406 | 80843775 | 80841406 | ID=MS.gene81289.t1;Parent=MS.gene81289 |
| chr5.2 | exon | 80841406 | 80841529 | 80841406 | ID=MS.gene81289.t1.exon1;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80841406 | 80841529 | 80841406 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80841784 | 80841866 | 80841784 | ID=MS.gene81289.t1.exon2;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80841784 | 80841866 | 80841784 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80842108 | 80842167 | 80842108 | ID=MS.gene81289.t1.exon3;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80842108 | 80842167 | 80842108 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80842849 | 80842957 | 80842849 | ID=MS.gene81289.t1.exon4;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80842849 | 80842957 | 80842849 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80843079 | 80843131 | 80843079 | ID=MS.gene81289.t1.exon5;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80843079 | 80843131 | 80843079 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80843226 | 80843306 | 80843226 | ID=MS.gene81289.t1.exon6;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80843226 | 80843306 | 80843226 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80843428 | 80843540 | 80843428 | ID=MS.gene81289.t1.exon7;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80843428 | 80843540 | 80843428 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| chr5.2 | exon | 80843718 | 80843775 | 80843718 | ID=MS.gene81289.t1.exon8;Parent=MS.gene81289.t1 |
| chr5.2 | CDS | 80843718 | 80843775 | 80843718 | ID=cds.MS.gene81289.t1;Parent=MS.gene81289.t1 |
| Gene Sequence |
| Protein sequence |
