Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04347.t1 | XP_003600397.2 | 100 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.90E-121 | 444.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04347.t1 | Q75LU8 | 91.6 | 226 | 18 | 1 | 1 | 226 | 1 | 225 | 3.9e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04347.t1 | G7IXS6 | 100.0 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 2.1e-121 | 444.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04347 | MS.gene04148 | PPI |
| MS.gene81289 | MS.gene04347 | PPI |
| MS.gene04347 | MS.gene81289 | PPI |
| MS.gene04347 | MS.gene05700 | PPI |
| MS.gene04347 | MS.gene070285 | PPI |
| MS.gene04347 | MS.gene38263 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04347.t1 | MTR_3g060730 | 100.000 | 226 | 0 | 0 | 1 | 226 | 1 | 226 | 1.58e-167 | 461 |
| MS.gene04347.t1 | MTR_5g096420 | 93.363 | 226 | 15 | 0 | 1 | 226 | 1 | 226 | 2.89e-157 | 434 |
| MS.gene04347.t1 | MTR_4g134250 | 90.749 | 227 | 20 | 1 | 1 | 226 | 1 | 227 | 1.25e-151 | 420 |
| MS.gene04347.t1 | MTR_3g060730 | 100.000 | 184 | 0 | 0 | 43 | 226 | 5 | 188 | 6.71e-134 | 374 |
| MS.gene04347.t1 | MTR_2g027440 | 66.667 | 228 | 73 | 1 | 1 | 225 | 1 | 228 | 6.15e-113 | 323 |
| MS.gene04347.t1 | MTR_2g027480 | 66.228 | 228 | 74 | 1 | 1 | 225 | 1 | 228 | 1.29e-110 | 317 |
| MS.gene04347.t1 | MTR_2g027500 | 68.950 | 219 | 67 | 1 | 8 | 225 | 5 | 223 | 7.69e-110 | 315 |
| MS.gene04347.t1 | MTR_2g027520 | 64.069 | 231 | 78 | 1 | 1 | 226 | 1 | 231 | 2.91e-105 | 303 |
| MS.gene04347.t1 | MTR_3g091440 | 60.577 | 208 | 82 | 0 | 19 | 226 | 5 | 212 | 8.86e-94 | 274 |
| MS.gene04347.t1 | MTR_4g099210 | 62.857 | 210 | 78 | 0 | 16 | 225 | 1 | 210 | 9.44e-94 | 273 |
| MS.gene04347.t1 | MTR_1g016430 | 56.957 | 230 | 94 | 1 | 1 | 225 | 20 | 249 | 7.78e-88 | 260 |
| MS.gene04347.t1 | MTR_3g091440 | 62.500 | 184 | 69 | 0 | 43 | 226 | 30 | 213 | 1.39e-85 | 253 |
| MS.gene04347.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 1 | 180 | 2.96e-85 | 251 |
| MS.gene04347.t1 | MTR_1g016430 | 66.667 | 180 | 60 | 0 | 43 | 222 | 99 | 278 | 7.24e-84 | 251 |
| MS.gene04347.t1 | MTR_8g099575 | 57.436 | 195 | 83 | 0 | 31 | 225 | 16 | 210 | 4.95e-81 | 241 |
| MS.gene04347.t1 | MTR_8g099570 | 57.143 | 196 | 84 | 0 | 31 | 226 | 58 | 253 | 2.82e-79 | 238 |
| MS.gene04347.t1 | MTR_8g016170 | 59.474 | 190 | 77 | 0 | 36 | 225 | 66 | 255 | 7.11e-77 | 232 |
| MS.gene04347.t1 | MTR_8g027620 | 55.612 | 196 | 87 | 0 | 31 | 226 | 39 | 234 | 3.20e-76 | 232 |
| MS.gene04347.t1 | MTR_5g013560 | 59.487 | 195 | 68 | 1 | 31 | 225 | 15 | 198 | 1.65e-73 | 222 |
| MS.gene04347.t1 | MTR_8g016170 | 59.538 | 173 | 70 | 0 | 36 | 208 | 47 | 219 | 1.11e-68 | 210 |
| MS.gene04347.t1 | MTR_3g091440 | 60.131 | 153 | 61 | 0 | 19 | 171 | 5 | 157 | 1.83e-64 | 198 |
| MS.gene04347.t1 | MTR_4g113505 | 48.370 | 184 | 95 | 0 | 42 | 225 | 6 | 189 | 2.90e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04347.t1 | AT4G26570 | 90.708 | 226 | 21 | 0 | 1 | 226 | 1 | 226 | 5.89e-151 | 419 |
| MS.gene04347.t1 | AT4G26570 | 89.130 | 230 | 21 | 1 | 1 | 226 | 1 | 230 | 6.66e-149 | 414 |
| MS.gene04347.t1 | AT5G55990 | 90.265 | 226 | 22 | 0 | 1 | 226 | 1 | 226 | 1.71e-148 | 412 |
| MS.gene04347.t1 | AT5G55990 | 90.265 | 226 | 22 | 0 | 1 | 226 | 1 | 226 | 1.71e-148 | 412 |
| MS.gene04347.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 7.36e-112 | 320 |
| MS.gene04347.t1 | AT4G16350 | 71.239 | 226 | 58 | 2 | 1 | 226 | 2 | 220 | 7.36e-112 | 320 |
| MS.gene04347.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene04347.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene04347.t1 | AT4G17615 | 66.162 | 198 | 67 | 0 | 28 | 225 | 13 | 210 | 6.41e-95 | 276 |
| MS.gene04347.t1 | AT4G26560 | 70.312 | 192 | 44 | 2 | 48 | 226 | 23 | 214 | 2.16e-94 | 275 |
| MS.gene04347.t1 | AT5G47100 | 67.179 | 195 | 64 | 0 | 31 | 225 | 16 | 210 | 4.12e-94 | 275 |
| MS.gene04347.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene04347.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene04347.t1 | AT5G24270 | 63.684 | 190 | 69 | 0 | 29 | 218 | 18 | 207 | 4.93e-88 | 259 |
| MS.gene04347.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 31 | 246 | 6.15e-87 | 257 |
| MS.gene04347.t1 | AT4G33000 | 60.185 | 216 | 85 | 1 | 11 | 225 | 41 | 256 | 8.92e-87 | 257 |
| MS.gene04347.t1 | AT4G17615 | 63.441 | 186 | 68 | 0 | 28 | 213 | 13 | 198 | 1.04e-82 | 247 |
| MS.gene04347.t1 | AT5G24270 | 62.570 | 179 | 67 | 0 | 40 | 218 | 4 | 182 | 2.79e-82 | 244 |
| MS.gene04347.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene04347.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene04347.t1 | AT1G64480 | 52.804 | 214 | 101 | 0 | 12 | 225 | 1 | 214 | 4.93e-80 | 239 |
| MS.gene04347.t1 | AT1G64480 | 52.792 | 197 | 93 | 0 | 12 | 208 | 1 | 197 | 1.34e-72 | 219 |
| MS.gene04347.t1 | AT4G17615 | 63.057 | 157 | 58 | 0 | 69 | 225 | 12 | 168 | 2.86e-71 | 215 |
| MS.gene04347.t1 | AT5G24270 | 59.740 | 154 | 62 | 0 | 65 | 218 | 7 | 160 | 6.88e-66 | 201 |
| MS.gene04347.t1 | AT5G47100 | 64.789 | 142 | 50 | 0 | 31 | 172 | 16 | 157 | 5.58e-63 | 194 |
| MS.gene04347.t1 | AT4G01420 | 49.741 | 193 | 97 | 0 | 26 | 218 | 10 | 202 | 1.12e-62 | 194 |
| MS.gene04347.t1 | AT4G01420 | 49.727 | 183 | 92 | 0 | 26 | 208 | 10 | 192 | 1.96e-58 | 183 |
| MS.gene04347.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.53e-57 | 181 |
| MS.gene04347.t1 | AT4G33000 | 58.642 | 162 | 66 | 1 | 11 | 171 | 31 | 192 | 1.53e-57 | 181 |
| MS.gene04347.t1 | AT4G33000 | 59.006 | 161 | 65 | 1 | 11 | 170 | 31 | 191 | 2.63e-57 | 181 |
| MS.gene04347.t1 | AT4G33000 | 55.738 | 122 | 53 | 1 | 11 | 131 | 31 | 152 | 1.71e-36 | 126 |
Find 49 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGTTTGTTTGCTGATC+GGG | 0.319506 | 3.4:+56499739 | MS.gene04347:CDS |
| CCCTTCAAGTATCGTCTACT+TGG | 0.324835 | 3.4:-56501831 | None:intergenic |
| ATTCAATCTTATCATCAATA+GGG | 0.343925 | 3.4:-56500599 | None:intergenic |
| CATTCAATCTTATCATCAAT+AGG | 0.360435 | 3.4:-56500600 | None:intergenic |
| TTATCATCAATAGGGGCATT+TGG | 0.366158 | 3.4:-56500591 | None:intergenic |
| GTCTCCCTAGCAAGAAGTTC+AGG | 0.379316 | 3.4:-56499027 | None:intergenic |
| GTTGCTACACTTGCGGAGTC+TGG | 0.413717 | 3.4:+56501113 | MS.gene04347:CDS |
| TACCATGTTGCAGTGCTTAG+AGG | 0.427015 | 3.4:+56498927 | None:intergenic |
| CTTGCAGGAAGAATTTCAAT+TGG | 0.430829 | 3.4:+56499694 | MS.gene04347:intron |
| GATCTTCAAGGCCTCTTGAC+TGG | 0.445973 | 3.4:-56499005 | None:intergenic |
| ACAAAGCACAATGGGATACT+AGG | 0.447006 | 3.4:+56500531 | MS.gene04347:CDS |
| CAAGAAGTTCAGGATCTTCA+AGG | 0.447125 | 3.4:-56499017 | None:intergenic |
| CATCAATAGGGGCATTTGGA+TGG | 0.463572 | 3.4:-56500587 | None:intergenic |
| TGGGAATGGAATACAAAGCT+TGG | 0.469623 | 3.4:-56501811 | None:intergenic |
| TATTTGATACAAAGCACAAT+GGG | 0.478319 | 3.4:+56500523 | MS.gene04347:CDS |
| GGATTACTTGCAGACGTTTG+AGG | 0.490426 | 3.4:+56501277 | MS.gene04347:intron |
| CCCAAGTAGACGATACTTGA+AGG | 0.498461 | 3.4:+56501830 | MS.gene04347:CDS |
| AGTAGTGCTGTAATTGATGA+TGG | 0.499604 | 3.4:+56499429 | MS.gene04347:CDS |
| AAGAAAGTTTGTTTGCTGAT+CGG | 0.502858 | 3.4:+56499738 | MS.gene04347:CDS |
| AAGATCCTGAACTTCTTGCT+AGG | 0.502884 | 3.4:+56499022 | MS.gene04347:CDS |
| GGGAATGGAATACAAAGCTT+GGG | 0.521874 | 3.4:-56501810 | None:intergenic |
| ATTTGGATGGAAAACGGATA+GGG | 0.523943 | 3.4:-56500574 | None:intergenic |
| GAATTTACTTGAGATATTGA+AGG | 0.524603 | 3.4:-56501388 | None:intergenic |
| CATTTGGATGGAAAACGGAT+AGG | 0.526248 | 3.4:-56500575 | None:intergenic |
| ACCATGTTGCAGTGCTTAGA+GGG | 0.527412 | 3.4:+56498928 | None:intergenic |
| AAGTATCGTCTACTTGGGAA+TGG | 0.527759 | 3.4:-56501825 | None:intergenic |
| AGGGGCATTTGGATGGAAAA+CGG | 0.529208 | 3.4:-56500580 | None:intergenic |
| AATTTACTTGAGATATTGAA+GGG | 0.537206 | 3.4:-56501387 | None:intergenic |
| AGATCCTGAACTTCTTGCTA+GGG | 0.557142 | 3.4:+56499023 | MS.gene04347:CDS |
| TGATGATGGGTTGATTAACA+AGG | 0.559178 | 3.4:+56499443 | MS.gene04347:CDS |
| CTTGAGATCATATAGTTGAA+AGG | 0.560664 | 3.4:-56500964 | None:intergenic |
| GATATAAATAACCAGTCAAG+AGG | 0.576093 | 3.4:+56498994 | MS.gene04347:CDS |
| TTCAATCTTATCATCAATAG+GGG | 0.577092 | 3.4:-56500598 | None:intergenic |
| GTGACGGATGCCTCAAAACA+AGG | 0.578371 | 3.4:-56501349 | None:intergenic |
| CCTTCAAGTATCGTCTACTT+GGG | 0.585565 | 3.4:-56501830 | None:intergenic |
| GTCATGTTCTTCAAAAGTGA+CGG | 0.587926 | 3.4:-56501365 | None:intergenic |
| GCAAGATTGACAAGGAGGAG+TGG | 0.614720 | 3.4:+56501321 | MS.gene04347:CDS |
| GGAGTCTGGTATGAATCTAT+CGG | 0.615262 | 3.4:+56501127 | MS.gene04347:CDS |
| TATACAGGTGAAACAAATGG+TGG | 0.623629 | 3.4:+56501091 | MS.gene04347:intron |
| TTATTTGATACAAAGCACAA+TGG | 0.632496 | 3.4:+56500522 | MS.gene04347:CDS |
| TACAAAGCTTGGGAACGTTG+TGG | 0.634535 | 3.4:-56501800 | None:intergenic |
| TCCCTCTAAGCACTGCAACA+TGG | 0.634698 | 3.4:-56498929 | None:intergenic |
| GAAGCAGATACAAAGCATGA+TGG | 0.634840 | 3.4:+56501299 | MS.gene04347:CDS |
| CTATATGATCTCAAGCAGCA+AGG | 0.650338 | 3.4:+56500972 | MS.gene04347:CDS |
| AATGGTGGTTGCTACACTTG+CGG | 0.655953 | 3.4:+56501106 | MS.gene04347:CDS |
| GTAGTGCTGTAATTGATGAT+GGG | 0.667152 | 3.4:+56499430 | MS.gene04347:CDS |
| GCATGATGGCAAGATTGACA+AGG | 0.674338 | 3.4:+56501313 | MS.gene04347:CDS |
| TGATGGCAAGATTGACAAGG+AGG | 0.679906 | 3.4:+56501316 | MS.gene04347:CDS |
| TATAGAAAGTATAATCGACA+AGG | 0.691619 | 3.4:+56501157 | MS.gene04347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTTTAACATTAAATTT+TGG | + | chr3.4:56501256-56501275 | MS.gene04347:intron | 10.0% |
| !!! | ATGTTTTATTTTCTATTTTA+TGG | + | chr3.4:56499869-56499888 | MS.gene04347:intron | 10.0% |
| !!! | TGTTTTATTTTCTATTTTAT+GGG | + | chr3.4:56499870-56499889 | MS.gene04347:intron | 10.0% |
| !! | ACTAAAATTGAATATAACAT+CGG | - | chr3.4:56499668-56499687 | None:intergenic | 15.0% |
| !! | ATGAAAATCAATATAAGAAA+AGG | - | chr3.4:56501760-56501779 | None:intergenic | 15.0% |
| !! | CAATATTCTATTGAATTTAA+AGG | + | chr3.4:56499197-56499216 | MS.gene04347:intron | 15.0% |
| !! | GTATGTAATATTTATACTAT+AGG | + | chr3.4:56499331-56499350 | MS.gene04347:intron | 15.0% |
| !! | TAAATTAAAGAAGAGTTTAA+TGG | - | chr3.4:56500878-56500897 | None:intergenic | 15.0% |
| !! | TAAATTCTTTAATGAGAAAA+GGG | + | chr3.4:56500705-56500724 | MS.gene04347:intron | 15.0% |
| !! | TGAAAATCAATATAAGAAAA+GGG | - | chr3.4:56501759-56501778 | None:intergenic | 15.0% |
| !! | TTATATGAATTTCAACTAAT+AGG | + | chr3.4:56501569-56501588 | MS.gene04347:intron | 15.0% |
| !!! | AAAATCCAATTCTATTTTTT+TGG | + | chr3.4:56501030-56501049 | MS.gene04347:intron | 15.0% |
| !!! | GAAAACTTGTTAAAAAATTA+CGG | - | chr3.4:56501419-56501438 | None:intergenic | 15.0% |
| !! | AAATTCTTTAATGAGAAAAG+GGG | + | chr3.4:56500706-56500725 | MS.gene04347:intron | 20.0% |
| !! | AAGAAAAAAAGAAAACATGT+TGG | - | chr3.4:56501716-56501735 | None:intergenic | 20.0% |
| !! | AAGTAAATTTAACGCTATAT+TGG | - | chr3.4:56499900-56499919 | None:intergenic | 20.0% |
| !! | AATTTACTTGAGATATTGAA+GGG | - | chr3.4:56501390-56501409 | None:intergenic | 20.0% |
| !! | AGTAGAAATGATAATTAATC+CGG | - | chr3.4:56500396-56500415 | None:intergenic | 20.0% |
| !! | ATAGAATAAAGTAGCATTAA+CGG | - | chr3.4:56499063-56499082 | None:intergenic | 20.0% |
| !! | ATAGTAAACACTGTATATTA+AGG | - | chr3.4:56500304-56500323 | None:intergenic | 20.0% |
| !! | ATATAGCGTTAAATTTACTT+TGG | + | chr3.4:56499900-56499919 | MS.gene04347:intron | 20.0% |
| !! | ATTAAACATATTACAAGGAA+AGG | - | chr3.4:56500431-56500450 | None:intergenic | 20.0% |
| !! | ATTCAATCTTATCATCAATA+GGG | - | chr3.4:56500602-56500621 | None:intergenic | 20.0% |
| !! | GTAAATTCTTTAATGAGAAA+AGG | + | chr3.4:56500704-56500723 | MS.gene04347:intron | 20.0% |
| !! | TAGTTTCATCATGTAAATTA+AGG | + | chr3.4:56500094-56500113 | MS.gene04347:intron | 20.0% |
| !!! | ATATTGATTTTCATGTGTTT+GGG | + | chr3.4:56501766-56501785 | MS.gene04347:intron | 20.0% |
| !!! | TATATTGATTTTCATGTGTT+TGG | + | chr3.4:56501765-56501784 | MS.gene04347:intron | 20.0% |
| !!! | TCATTTGAATTTTAACCAAT+AGG | - | chr3.4:56501497-56501516 | None:intergenic | 20.0% |
| ! | ACAAAACAGATAGAATAGAA+GGG | - | chr3.4:56499774-56499793 | None:intergenic | 25.0% |
| ! | AGTTACAAAATGAGTTTATG+TGG | + | chr3.4:56500807-56500826 | MS.gene04347:intron | 25.0% |
| ! | CATTCAATCTTATCATCAAT+AGG | - | chr3.4:56500603-56500622 | None:intergenic | 25.0% |
| ! | GAACTAGAACAAAAAAGAAA+TGG | + | chr3.4:56499239-56499258 | MS.gene04347:intron | 25.0% |
| ! | GAATTTACTTGAGATATTGA+AGG | - | chr3.4:56501391-56501410 | None:intergenic | 25.0% |
| ! | GATAAACAAAACATATGAAC+AGG | - | chr3.4:56500327-56500346 | None:intergenic | 25.0% |
| ! | GTTAGATGACATCATATAAT+AGG | + | chr3.4:56500036-56500055 | MS.gene04347:intron | 25.0% |
| ! | TAAAAAGACAGACAAAAATC+AGG | - | chr3.4:56501073-56501092 | None:intergenic | 25.0% |
| ! | TAAGAACTAACATAATATCC+CGG | - | chr3.4:56499813-56499832 | None:intergenic | 25.0% |
| ! | TATTTGATACAAAGCACAAT+GGG | + | chr3.4:56500523-56500542 | MS.gene04347:CDS | 25.0% |
| ! | TCTTGAAAATATGTGTGTAA+AGG | - | chr3.4:56500357-56500376 | None:intergenic | 25.0% |
| ! | TTATTTGATACAAAGCACAA+TGG | + | chr3.4:56500522-56500541 | MS.gene04347:CDS | 25.0% |
| ! | TTCAATCTTATCATCAATAG+GGG | - | chr3.4:56500601-56500620 | None:intergenic | 25.0% |
| ! | TTTCAAGAAAAATCACTTTC+CGG | + | chr3.4:56500369-56500388 | MS.gene04347:intron | 25.0% |
| !! | ATGTTATTGTTTTCCTTCTT+TGG | + | chr3.4:56499616-56499635 | MS.gene04347:intron | 25.0% |
| !! | CACTTGACAAATATTTCTAA+AGG | - | chr3.4:56501688-56501707 | None:intergenic | 25.0% |
| !! | TATAGAAAGTATAATCGACA+AGG | + | chr3.4:56501157-56501176 | MS.gene04347:CDS | 25.0% |
| !! | TCTTTTATTGAAAACTCACT+TGG | + | chr3.4:56501233-56501252 | MS.gene04347:intron | 25.0% |
| !! | TGAAACTACACTAATTTTTC+CGG | - | chr3.4:56500082-56500101 | None:intergenic | 25.0% |
| !! | TTTTATACAGGTGAAACAAA+TGG | + | chr3.4:56501088-56501107 | MS.gene04347:intron | 25.0% |
| !! | TTTTGTCTGTCTTTTTATAC+AGG | + | chr3.4:56501076-56501095 | MS.gene04347:intron | 25.0% |
| !!! | ATTTCTAAAGGAGTGTTATT+TGG | - | chr3.4:56501676-56501695 | None:intergenic | 25.0% |
| !!! | TGCGGACATAATTATTTTTT+TGG | + | chr3.4:56501627-56501646 | MS.gene04347:intron | 25.0% |
| !!! | TTTCAAGTTAGTTAGTTTAC+CGG | + | chr3.4:56500060-56500079 | MS.gene04347:intron | 25.0% |
| !!! | TTTTGGAGTAATCTTCAAAA+CGG | + | chr3.4:56501644-56501663 | MS.gene04347:intron | 25.0% |
| AAATGATAATTAATCCGGTC+CGG | - | chr3.4:56500391-56500410 | None:intergenic | 30.0% | |
| AACAGTGGTGTGAAAAATAA+TGG | - | chr3.4:56499301-56499320 | None:intergenic | 30.0% | |
| AACTAAAACTCTTCCAAAGA+AGG | - | chr3.4:56499632-56499651 | None:intergenic | 30.0% | |
| ACTGAAATATGAAATTGCAG+CGG | - | chr3.4:56500942-56500961 | None:intergenic | 30.0% | |
| AGTTGTTCAATGACAAAAGA+AGG | - | chr3.4:56499473-56499492 | None:intergenic | 30.0% | |
| CACAAAACAGATAGAATAGA+AGG | - | chr3.4:56499775-56499794 | None:intergenic | 30.0% | |
| CATACTTATTTCGAAAACAG+TGG | - | chr3.4:56499316-56499335 | None:intergenic | 30.0% | |
| CCACATGGAATAATAAGAAT+CGG | - | chr3.4:56500456-56500475 | None:intergenic | 30.0% | |
| CGGTCATTAAACATATTACA+AGG | - | chr3.4:56500436-56500455 | None:intergenic | 30.0% | |
| CTTGAGATCATATAGTTGAA+AGG | - | chr3.4:56500967-56500986 | None:intergenic | 30.0% | |
| GAGAGCCAAAAAAATAGAAT+TGG | - | chr3.4:56501038-56501057 | None:intergenic | 30.0% | |
| GATATAAATAACCAGTCAAG+AGG | + | chr3.4:56498994-56499013 | MS.gene04347:CDS | 30.0% | |
| GCAATATCATGAGATTTCAT+TGG | + | chr3.4:56500829-56500848 | MS.gene04347:intron | 30.0% | |
| GTTAAATTTACTTTGGACAC+TGG | + | chr3.4:56499907-56499926 | MS.gene04347:intron | 30.0% | |
| TGTGCAAATATGTTTATCTC+CGG | + | chr3.4:56499791-56499810 | MS.gene04347:intron | 30.0% | |
| ! | AAGAAAGTTTGTTTGCTGAT+CGG | + | chr3.4:56499738-56499757 | MS.gene04347:CDS | 30.0% |
| ! | AGCTTTTCTCTAACTCTATT+AGG | + | chr3.4:56500491-56500510 | MS.gene04347:intron | 30.0% |
| AGTAGTGCTGTAATTGATGA+TGG | + | chr3.4:56499429-56499448 | MS.gene04347:CDS | 35.0% | |
| ATCAGACACTTCATAGATGT+TGG | - | chr3.4:56499141-56499160 | None:intergenic | 35.0% | |
| ATTTGGATGGAAAACGGATA+GGG | - | chr3.4:56500577-56500596 | None:intergenic | 35.0% | |
| CCGATTCTTATTATTCCATG+TGG | + | chr3.4:56500453-56500472 | MS.gene04347:intron | 35.0% | |
| CTTAACACACTATCTCCTAT+TGG | + | chr3.4:56501479-56501498 | MS.gene04347:intron | 35.0% | |
| CTTGCAGGAAGAATTTCAAT+TGG | + | chr3.4:56499694-56499713 | MS.gene04347:intron | 35.0% | |
| GATCGAATTAAAGTGTGTTG+CGG | + | chr3.4:56501609-56501628 | MS.gene04347:intron | 35.0% | |
| GCATGATACAGTATTTCAGA+CGG | - | chr3.4:56499178-56499197 | None:intergenic | 35.0% | |
| GTCATGTTCTTCAAAAGTGA+CGG | - | chr3.4:56501368-56501387 | None:intergenic | 35.0% | |
| GTCATTGAACAACTTATGCA+TGG | + | chr3.4:56499479-56499498 | MS.gene04347:intron | 35.0% | |
| GTGCAAATATGTTTATCTCC+GGG | + | chr3.4:56499792-56499811 | MS.gene04347:intron | 35.0% | |
| TACCTCTGGTAAATGTTTGT+AGG | + | chr3.4:56500001-56500020 | MS.gene04347:intron | 35.0% | |
| TATACAGGTGAAACAAATGG+TGG | + | chr3.4:56501091-56501110 | MS.gene04347:intron | 35.0% | |
| TTACTTTGGACACTGGTATA+TGG | + | chr3.4:56499914-56499933 | MS.gene04347:intron | 35.0% | |
| TTGAACAACTTATGCATGGT+TGG | + | chr3.4:56499483-56499502 | MS.gene04347:intron | 35.0% | |
| TTGTAGTAAATCGTGTATCG+CGG | + | chr3.4:56500210-56500229 | MS.gene04347:intron | 35.0% | |
| TTTGTTCAACTTTGTACCTC+TGG | + | chr3.4:56499987-56500006 | MS.gene04347:intron | 35.0% | |
| ! | AGAAAGTTTGTTTGCTGATC+GGG | + | chr3.4:56499739-56499758 | MS.gene04347:CDS | 35.0% |
| ! | GCAAAACTAGTTTACACTGA+CGG | - | chr3.4:56500739-56500758 | None:intergenic | 35.0% |
| ! | GTAGTGCTGTAATTGATGAT+GGG | + | chr3.4:56499430-56499449 | MS.gene04347:CDS | 35.0% |
| !! | AATTTTAGTGCTCATCTTGC+AGG | + | chr3.4:56499679-56499698 | MS.gene04347:intron | 35.0% |
| !! | TGATGATGGGTTGATTAACA+AGG | + | chr3.4:56499443-56499462 | MS.gene04347:CDS | 35.0% |
| !! | TTATCATCAATAGGGGCATT+TGG | - | chr3.4:56500594-56500613 | None:intergenic | 35.0% |
| !!! | AGCAGCAAGGTTTTATTGAA+AGG | + | chr3.4:56500985-56501004 | MS.gene04347:CDS | 35.0% |
| !!! | AGGTTTTATTGAAAGGCAAG+AGG | + | chr3.4:56500992-56501011 | MS.gene04347:CDS | 35.0% |
| !!! | AGTGTAAACTAGTTTTGCAC+TGG | + | chr3.4:56500741-56500760 | MS.gene04347:intron | 35.0% |
| AAGATCCTGAACTTCTTGCT+AGG | + | chr3.4:56499022-56499041 | MS.gene04347:CDS | 40.0% | |
| ACAAAGCACAATGGGATACT+AGG | + | chr3.4:56500531-56500550 | MS.gene04347:CDS | 40.0% | |
| ACCATCCCACCAAATTTATG+TGG | - | chr3.4:56501549-56501568 | None:intergenic | 40.0% | |
| AGAAAAATCACTTTCCGGAC+CGG | + | chr3.4:56500374-56500393 | MS.gene04347:intron | 40.0% | |
| AGATCCTGAACTTCTTGCTA+GGG | + | chr3.4:56499023-56499042 | MS.gene04347:CDS | 40.0% | |
| AGCAGCTATAACAGTGCTAT+AGG | - | chr3.4:56500177-56500196 | None:intergenic | 40.0% | |
| AGTGCAAGTGACAGAAAAAC+AGG | - | chr3.4:56501189-56501208 | None:intergenic | 40.0% | |
| ATGACTCCCACTAAATCATG+TGG | + | chr3.4:56501513-56501532 | MS.gene04347:intron | 40.0% | |
| CAAGAAGTTCAGGATCTTCA+AGG | - | chr3.4:56499020-56499039 | None:intergenic | 40.0% | |
| CACCTACAAACATTTACCAG+AGG | - | chr3.4:56500006-56500025 | None:intergenic | 40.0% | |
| CATTTGGATGGAAAACGGAT+AGG | - | chr3.4:56500578-56500597 | None:intergenic | 40.0% | |
| CTATATGATCTCAAGCAGCA+AGG | + | chr3.4:56500972-56500991 | MS.gene04347:CDS | 40.0% | |
| GAAGCAGATACAAAGCATGA+TGG | + | chr3.4:56501299-56501318 | MS.gene04347:CDS | 40.0% | |
| GCAGCTATAACAGTGCTATA+GGG | - | chr3.4:56500176-56500195 | None:intergenic | 40.0% | |
| GGAGTCTGGTATGAATCTAT+CGG | + | chr3.4:56501127-56501146 | MS.gene04347:CDS | 40.0% | |
| GGGAATGGAATACAAAGCTT+GGG | - | chr3.4:56501813-56501832 | None:intergenic | 40.0% | |
| GTGCAAGTGACAGAAAAACA+GGG | - | chr3.4:56501188-56501207 | None:intergenic | 40.0% | |
| TAAAAATAACCGCGTAGTGC+TGG | - | chr3.4:56500781-56500800 | None:intergenic | 40.0% | |
| TAGCCAGTGTTGTCAAATAG+CGG | - | chr3.4:56500273-56500292 | None:intergenic | 40.0% | |
| TGACTCCCACTAAATCATGT+GGG | + | chr3.4:56501514-56501533 | MS.gene04347:intron | 40.0% | |
| TGGGAATGGAATACAAAGCT+TGG | - | chr3.4:56501814-56501833 | None:intergenic | 40.0% | |
| TTGCAGATCGCAGAAAATAG+TGG | + | chr3.4:56500138-56500157 | MS.gene04347:intron | 40.0% | |
| ! | AAGTATCGTCTACTTGGGAA+TGG | - | chr3.4:56501828-56501847 | None:intergenic | 40.0% |
| ! | ACCACATAAATTTGGTGGGA+TGG | + | chr3.4:56501545-56501564 | MS.gene04347:intron | 40.0% |
| ! | GATTTTCATGTGTTTGGGCA+GGG | + | chr3.4:56501771-56501790 | MS.gene04347:intron | 40.0% |
| ! | TGATTTTCATGTGTTTGGGC+AGG | + | chr3.4:56501770-56501789 | MS.gene04347:intron | 40.0% |
| !!! | AGTGGAGAAACCTTGTTTTG+AGG | + | chr3.4:56501339-56501358 | MS.gene04347:CDS | 40.0% |
| AAATAGCGGCTGTAGCGAAA+CGG | - | chr3.4:56500259-56500278 | None:intergenic | 45.0% | |
| AATCAGAATCCAGCACTACG+CGG | + | chr3.4:56500769-56500788 | MS.gene04347:intron | 45.0% | |
| AATGGTGGTTGCTACACTTG+CGG | + | chr3.4:56501106-56501125 | MS.gene04347:CDS | 45.0% | |
| CACTAAATCATGTGGGCAGT+GGG | + | chr3.4:56501521-56501540 | MS.gene04347:intron | 45.0% | |
| CACTGCCCACATGATTTAGT+GGG | - | chr3.4:56501522-56501541 | None:intergenic | 45.0% | |
| CAGTGGGCACCACATAAATT+TGG | + | chr3.4:56501537-56501556 | MS.gene04347:intron | 45.0% | |
| CGAGTGAGATACTAACCACA+TGG | - | chr3.4:56500471-56500490 | None:intergenic | 45.0% | |
| GCATGATGGCAAGATTGACA+AGG | + | chr3.4:56501313-56501332 | MS.gene04347:CDS | 45.0% | |
| GGATTACTTGCAGACGTTTG+AGG | + | chr3.4:56501277-56501296 | MS.gene04347:intron | 45.0% | |
| GGGCACCACATAAATTTGGT+GGG | + | chr3.4:56501541-56501560 | MS.gene04347:intron | 45.0% | |
| TACAAAGCTTGGGAACGTTG+TGG | - | chr3.4:56501803-56501822 | None:intergenic | 45.0% | |
| TGATGGCAAGATTGACAAGG+AGG | + | chr3.4:56501316-56501335 | MS.gene04347:CDS | 45.0% | |
| TGGGCACCACATAAATTTGG+TGG | + | chr3.4:56501540-56501559 | MS.gene04347:intron | 45.0% | |
| TTGGACACTGGTATATGGTG+TGG | + | chr3.4:56499919-56499938 | MS.gene04347:intron | 45.0% | |
| !! | AGGGGCATTTGGATGGAAAA+CGG | - | chr3.4:56500583-56500602 | None:intergenic | 45.0% |
| !! | CATCAATAGGGGCATTTGGA+TGG | - | chr3.4:56500590-56500609 | None:intergenic | 45.0% |
| !!! | ATATTTTTCTTTTATTATTT+TGG | + | chr3.4:56500631-56500650 | MS.gene04347:intron | 5.0% |
| !!! | TATTTTTCTTTTATTATTTT+GGG | + | chr3.4:56500632-56500651 | MS.gene04347:intron | 5.0% |
| CAGCCGCTATTTGACAACAC+TGG | + | chr3.4:56500267-56500286 | MS.gene04347:intron | 50.0% | |
| CCACTAAATCATGTGGGCAG+TGG | + | chr3.4:56501520-56501539 | MS.gene04347:intron | 50.0% | |
| CCACTGCCCACATGATTTAG+TGG | - | chr3.4:56501523-56501542 | None:intergenic | 50.0% | |
| GATCTTCAAGGCCTCTTGAC+TGG | - | chr3.4:56499008-56499027 | None:intergenic | 50.0% | |
| GCAAGATTGACAAGGAGGAG+TGG | + | chr3.4:56501321-56501340 | MS.gene04347:CDS | 50.0% | |
| GTCTCCCTAGCAAGAAGTTC+AGG | - | chr3.4:56499030-56499049 | None:intergenic | 50.0% | |
| ! | GCGTAGTGCTGGATTCTGAT+TGG | - | chr3.4:56500770-56500789 | None:intergenic | 50.0% |
| !! | GTGACGGATGCCTCAAAACA+AGG | - | chr3.4:56501352-56501371 | None:intergenic | 50.0% |
| GTTGCTACACTTGCGGAGTC+TGG | + | chr3.4:56501113-56501132 | MS.gene04347:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 56498931 | 56501849 | 56498931 | ID=MS.gene04347 |
| chr3.4 | mRNA | 56498931 | 56501849 | 56498931 | ID=MS.gene04347.t1;Parent=MS.gene04347 |
| chr3.4 | exon | 56498931 | 56499054 | 56498931 | ID=MS.gene04347.t1.exon1;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56498931 | 56499054 | 56498931 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56499382 | 56499464 | 56499382 | ID=MS.gene04347.t1.exon2;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56499382 | 56499464 | 56499382 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56499701 | 56499760 | 56499701 | ID=MS.gene04347.t1.exon3;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56499701 | 56499760 | 56499701 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56500513 | 56500621 | 56500513 | ID=MS.gene04347.t1.exon4;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56500513 | 56500621 | 56500513 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56500961 | 56501013 | 56500961 | ID=MS.gene04347.t1.exon5;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56500961 | 56501013 | 56500961 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56501098 | 56501178 | 56501098 | ID=MS.gene04347.t1.exon6;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56501098 | 56501178 | 56501098 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56501290 | 56501402 | 56501290 | ID=MS.gene04347.t1.exon7;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56501290 | 56501402 | 56501290 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| chr3.4 | exon | 56501792 | 56501849 | 56501792 | ID=MS.gene04347.t1.exon8;Parent=MS.gene04347.t1 |
| chr3.4 | CDS | 56501792 | 56501849 | 56501792 | ID=cds.MS.gene04347.t1;Parent=MS.gene04347.t1 |
| Gene Sequence |
| Protein sequence |
