AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043407

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043407.t1 MTR_2g090255 98.068 207 4 0 4 210 46 252 2.26e-153 425
MS.gene043407.t1 MTR_0040s0140 83.575 207 34 0 4 210 50 256 4.98e-138 386
MS.gene043407.t1 MTR_5g076950 58.738 206 84 1 5 210 60 264 5.85e-90 265
MS.gene043407.t1 MTR_5g075320 56.311 206 88 1 5 210 48 251 2.82e-85 253
MS.gene043407.t1 MTR_3g435430 54.854 206 91 1 5 210 44 247 2.68e-83 248
MS.gene043407.t1 MTR_3g094060 55.340 206 90 1 5 210 50 253 3.37e-83 248
MS.gene043407.t1 MTR_3g094040 55.340 206 90 1 5 210 50 253 1.05e-82 246
MS.gene043407.t1 MTR_4g081950 54.854 206 91 1 5 210 80 283 2.23e-82 246
MS.gene043407.t1 MTR_5g079950 52.427 206 98 0 5 210 52 257 3.25e-82 245
MS.gene043407.t1 MTR_2g097030 52.427 206 98 0 5 210 53 258 1.17e-81 244
MS.gene043407.t1 MTR_5g041700 52.913 206 95 1 5 210 44 247 2.54e-81 243
MS.gene043407.t1 MTR_3g064510 56.542 214 85 4 4 210 72 284 3.87e-81 243
MS.gene043407.t1 MTR_7g061720 51.456 206 100 0 5 210 51 256 3.96e-81 242
MS.gene043407.t1 MTR_3g466790 54.854 206 91 1 5 210 51 254 1.83e-80 241
MS.gene043407.t1 MTR_3g466760 54.854 206 91 1 5 210 57 260 2.10e-80 241
MS.gene043407.t1 MTR_7g013140 51.707 205 97 1 4 208 46 248 1.74e-77 233
MS.gene043407.t1 MTR_4g063975 51.942 206 99 0 5 210 51 256 1.65e-76 231
MS.gene043407.t1 MTR_7g011060 50.971 206 91 2 5 210 45 240 2.61e-76 229
MS.gene043407.t1 MTR_7g013150 49.515 206 102 1 3 208 47 250 6.05e-74 224
MS.gene043407.t1 MTR_1g085460 52.174 207 95 3 5 208 49 254 6.86e-74 224
MS.gene043407.t1 MTR_4g124340 51.456 206 99 1 5 209 78 283 7.03e-74 225
MS.gene043407.t1 MTR_7g111010 52.195 205 94 3 5 206 46 249 2.72e-73 222
MS.gene043407.t1 MTR_7g110990 52.195 205 94 3 5 206 31 234 2.98e-73 222
MS.gene043407.t1 MTR_8g058990 50.732 205 99 1 4 208 48 250 6.17e-73 221
MS.gene043407.t1 MTR_7g013120 50.481 208 100 2 3 209 46 251 2.22e-71 218
MS.gene043407.t1 MTR_8g464350 49.510 204 101 1 3 206 48 249 4.66e-71 217
MS.gene043407.t1 MTR_1g026020 46.602 206 107 2 5 208 48 252 6.80e-68 209
MS.gene043407.t1 MTR_6g012520 52.427 206 88 2 5 210 47 242 2.21e-66 204
MS.gene043407.t1 MTR_4g102450 45.813 203 108 2 5 206 55 256 1.19e-61 193
MS.gene043407.t1 MTR_5g011210 43.902 205 113 2 5 208 56 259 1.39e-60 190
MS.gene043407.t1 MTR_0008s0120 50.926 108 53 0 100 207 88 195 1.85e-35 124
MS.gene043407.t1 MTR_6g012500 53.000 100 47 0 111 210 181 280 5.09e-33 120
MS.gene043407.t1 MTR_2g090270 29.630 216 126 8 5 208 54 255 3.04e-25 99.4
MS.gene043407.t1 MTR_4g028640 31.963 219 112 11 5 206 61 259 2.57e-24 97.1
MS.gene043407.t1 MTR_2g090265 26.852 216 132 7 5 208 52 253 6.23e-23 93.2
MS.gene043407.t1 MTR_0122s0020 26.852 216 132 6 5 208 60 261 6.89e-23 93.2
MS.gene043407.t1 MTR_0118s0070 32.273 220 121 12 2 206 64 270 7.49e-22 90.5
MS.gene043407.t1 MTR_4g075790 28.182 220 119 13 5 206 40 238 9.01e-13 65.9
MS.gene043407.t1 MTR_1g085365 50.000 56 28 0 155 210 4 59 1.29e-12 60.8
MS.gene043407.t1 MTR_0122s0020 27.044 159 91 5 5 152 60 204 2.43e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043407.t1 AT4G38210 68.932 206 64 0 5 210 49 254 7.19e-111 318
MS.gene043407.t1 AT3G03220 54.854 206 92 1 5 210 59 263 2.67e-85 253
MS.gene043407.t1 AT3G55500 54.369 206 94 0 5 210 53 258 2.30e-83 248
MS.gene043407.t1 AT5G02260 51.456 206 100 0 5 210 51 256 4.06e-83 248
MS.gene043407.t1 AT2G39700 52.427 206 98 0 5 210 50 255 9.61e-83 246
MS.gene043407.t1 AT2G37640 53.398 206 96 0 5 210 30 235 1.63e-82 245
MS.gene043407.t1 AT2G37640 53.398 206 96 0 5 210 55 260 1.93e-82 246
MS.gene043407.t1 AT5G05290 53.623 207 93 2 5 210 51 255 4.68e-82 244
MS.gene043407.t1 AT2G40610 54.106 207 92 2 5 210 49 253 1.70e-81 243
MS.gene043407.t1 AT5G56320 51.942 206 97 1 5 210 48 251 3.30e-81 243
MS.gene043407.t1 AT5G56320 51.942 206 97 1 5 210 48 251 3.30e-81 243
MS.gene043407.t1 AT5G56320 51.942 206 97 1 5 210 48 251 1.71e-80 242
MS.gene043407.t1 AT1G69530 54.854 206 91 1 5 210 46 249 1.98e-80 240
MS.gene043407.t1 AT1G69530 54.854 206 91 1 5 210 46 249 1.98e-80 240
MS.gene043407.t1 AT2G03090 52.913 206 95 1 5 210 49 252 5.01e-80 239
MS.gene043407.t1 AT1G69530 55.224 201 88 1 5 205 46 244 1.82e-78 236
MS.gene043407.t1 AT2G28950 51.456 206 100 0 5 210 50 255 9.09e-77 231
MS.gene043407.t1 AT5G39280 53.398 206 92 2 3 208 71 272 5.76e-74 225
MS.gene043407.t1 AT1G26770 52.913 206 95 1 5 210 45 248 2.35e-73 222
MS.gene043407.t1 AT1G26770 52.913 206 95 1 5 210 55 258 3.88e-73 222
MS.gene043407.t1 AT5G39300 52.427 206 94 2 3 208 72 273 5.91e-73 222
MS.gene043407.t1 AT5G39290 53.398 206 92 2 3 208 75 276 6.93e-73 222
MS.gene043407.t1 AT5G39270 52.913 206 93 2 3 208 75 276 1.35e-72 221
MS.gene043407.t1 AT3G29030 49.515 206 95 2 5 210 57 253 3.26e-71 217
MS.gene043407.t1 AT1G20190 48.780 205 100 3 5 206 45 247 3.44e-70 214
MS.gene043407.t1 AT4G01630 48.293 205 102 3 5 206 47 250 3.21e-68 209
MS.gene043407.t1 AT1G62980 46.829 205 107 2 5 208 50 253 4.71e-67 207
MS.gene043407.t1 AT5G39260 47.826 207 99 2 2 208 62 259 8.07e-66 204
MS.gene043407.t1 AT5G39310 47.826 207 103 3 3 208 107 309 5.97e-65 203
MS.gene043407.t1 AT1G69530 47.087 206 77 2 5 210 46 219 3.52e-64 198
MS.gene043407.t1 AT1G69530 54.601 163 72 1 5 167 46 206 3.58e-63 196
MS.gene043407.t1 AT1G20190 48.148 189 93 3 21 206 2 188 1.54e-62 193
MS.gene043407.t1 AT3G15370 48.113 212 98 6 5 210 46 251 2.17e-62 194
MS.gene043407.t1 AT3G15370 48.113 212 98 6 5 210 76 281 8.00e-62 194
MS.gene043407.t1 AT1G12560 44.828 203 109 3 5 206 56 256 6.70e-60 189
MS.gene043407.t1 AT4G28250 28.571 217 128 7 5 208 55 257 2.44e-24 97.1
MS.gene043407.t1 AT1G65680 30.415 217 122 8 5 206 66 268 3.81e-23 94.0
MS.gene043407.t1 AT2G20750 29.817 218 127 8 5 208 59 264 2.45e-22 92.0
MS.gene043407.t1 AT4G28250 28.037 214 127 7 5 208 55 251 6.74e-22 90.5
MS.gene043407.t1 AT1G65681 28.111 217 125 9 5 206 17 217 6.25e-20 84.7
MS.gene043407.t1 AT2G45110 28.899 218 124 10 5 206 52 254 3.87e-19 83.2
MS.gene043407.t1 AT3G60570 27.149 221 133 9 1 208 1 206 1.20e-14 70.1
MS.gene043407.t1 AT3G60570 27.189 217 130 9 5 208 53 254 4.79e-14 69.3
MS.gene043407.t1 AT4G28250 27.564 156 88 5 5 152 55 193 8.78e-12 62.4
MS.gene043407.t1 AT4G28250 33.621 116 55 4 5 112 55 156 1.28e-11 62.0

Find 48 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTCACAAGGTTGATTA+TGG 0.175744 2.2:+9507401 MS.gene043407:CDS
GATTTCTGTCCTCCAAATTA+TGG 0.225295 2.2:+9507557 MS.gene043407:CDS
TATGGACTTTCATCTGATTA+TGG 0.229268 2.2:+9507575 MS.gene043407:CDS
GCTCCTGCAAACTGGCAATT+TGG 0.244244 2.2:+9508421 MS.gene043407:CDS
TCAGATGAAAGTCCATAATT+TGG 0.250351 2.2:-9507569 None:intergenic
ACAGAAGGAGCTTGTGGTTA+TGG 0.312063 2.2:+9507377 MS.gene043407:intron
GGATACCAATGGCAAGGAAT+TGG 0.318465 2.2:+9508302 MS.gene043407:CDS
CAAGTTCTTATTACAAATGT+AGG 0.326793 2.2:+9508229 MS.gene043407:CDS
GATACCAATGGCAAGGAATT+GGG 0.352310 2.2:+9508303 MS.gene043407:CDS
TGTCCAAATTGCCAGTTTGC+AGG 0.359469 2.2:-9508424 None:intergenic
CACATCTTATGGTGCTTGAT+TGG 0.373766 2.2:+9507506 MS.gene043407:CDS
AAAGTGAAGGGAACTAAAAC+TGG 0.381812 2.2:+9508277 MS.gene043407:CDS
CAAGGAATTGGGGACAAAAC+TGG 0.385261 2.2:+9508314 MS.gene043407:CDS
AAAACAACCTCTATCCTTTG+AGG 0.411228 2.2:+9508357 MS.gene043407:CDS
CAATTTGGACAAACATTTGA+AGG 0.422160 2.2:+9508436 MS.gene043407:CDS
ACATTCACAAGGTTGATTAT+GGG 0.445375 2.2:+9507402 MS.gene043407:CDS
GATTATGGGAAATATAGTAC+TGG 0.452620 2.2:+9507416 MS.gene043407:CDS
TGTCCCCAATTCCTTGCCAT+TGG 0.454064 2.2:-9508307 None:intergenic
ACAATGTAGCTCCTGCAAAC+TGG 0.454872 2.2:+9508413 MS.gene043407:CDS
ATATAGTTCCAATTCAATAT+AGG 0.455636 2.2:+9507675 MS.gene043407:CDS
GACATCTCAAAATGCTCACT+TGG 0.480475 2.2:-9507614 None:intergenic
GATGTGTTGATCACATCTTA+TGG 0.481755 2.2:+9507495 MS.gene043407:CDS
AAGTTCTTATTACAAATGTA+GGG 0.493659 2.2:+9508230 MS.gene043407:CDS
TCTTATTACAAATGTAGGGT+TGG 0.510367 2.2:+9508234 MS.gene043407:CDS
AGGGTTAAATGTAAAAGAAC+TGG 0.514896 2.2:+9508166 MS.gene043407:intron
ATTACAAATGTAGGGTTGGA+TGG 0.520180 2.2:+9508238 MS.gene043407:CDS
GATGAAAGTCCATAATTTGG+AGG 0.526023 2.2:-9507566 None:intergenic
TTCAACAAAGGGAGTACTTG+TGG 0.535641 2.2:+9507455 MS.gene043407:CDS
TTTCATCTGATTATGGTGGA+TGG 0.551689 2.2:+9507582 MS.gene043407:CDS
TTGATTACAGAAGGAGCTTG+TGG 0.560639 2.2:+9507371 MS.gene043407:intron
TGAAGGGAACTAAAACTGGA+TGG 0.585046 2.2:+9508281 MS.gene043407:CDS
ATACCAATGGCAAGGAATTG+GGG 0.588690 2.2:+9508304 MS.gene043407:CDS
TAGTTCCAATTCAATATAGG+AGG 0.594932 2.2:+9507678 MS.gene043407:CDS
ATAGTCACCTCAAAGGATAG+AGG 0.595630 2.2:-9508364 None:intergenic
GGACTTTCATCTGATTATGG+TGG 0.599208 2.2:+9507578 MS.gene043407:CDS
TGTAGGGTTGGATGGTGAAG+TGG 0.599601 2.2:+9508246 MS.gene043407:CDS
GGCTTGAAATTCACAATGAG+TGG 0.606308 2.2:+9508190 MS.gene043407:CDS
GTTAAATGTAAAAGAACTGG+TGG 0.614008 2.2:+9508169 MS.gene043407:CDS
GTAACAGTAACAACTACAGA+AGG 0.615173 2.2:-9507533 None:intergenic
CTGGATGGATACCAATGGCA+AGG 0.617275 2.2:+9508296 MS.gene043407:CDS
TAAAACTGGATGGATACCAA+TGG 0.633872 2.2:+9508291 MS.gene043407:CDS
TTTGAGGTGACTATCACAAG+TGG 0.637726 2.2:+9508373 MS.gene043407:CDS
ATTATGGGAAATATAGTACT+GGG 0.639481 2.2:+9507417 MS.gene043407:CDS
TTTACTACAAGCATGCAGCA+AGG 0.643489 2.2:+9506766 None:intergenic
ACTTGTGATAGTCACCTCAA+AGG 0.644655 2.2:-9508371 None:intergenic
AGTGGTTGCTGTAAAAGTGA+AGG 0.657922 2.2:+9508264 MS.gene043407:CDS
GTGGTTGCTGTAAAAGTGAA+GGG 0.675102 2.2:+9508265 MS.gene043407:CDS
TGGTTATGGAGACATTCACA+AGG 0.691220 2.2:+9507391 MS.gene043407:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGTAAAAATACTT+AGG - chr2.2:9508099-9508118 None:intergenic 10.0%
!! ACATCAAAATTCTTTATATT+GGG + chr2.2:9508001-9508020 MS.gene043407:intron 15.0%
!! AAGTTCTTATTACAAATGTA+GGG + chr2.2:9508230-9508249 MS.gene043407:CDS 20.0%
!! ATATAGTTCCAATTCAATAT+AGG + chr2.2:9507675-9507694 MS.gene043407:CDS 20.0%
!! CATCAAAATTCTTTATATTG+GGG + chr2.2:9508002-9508021 MS.gene043407:intron 20.0%
!! GACATCAAAATTCTTTATAT+TGG + chr2.2:9508000-9508019 MS.gene043407:intron 20.0%
!!! ATGCACTTATAGTTTTAAAT+TGG - chr2.2:9508031-9508050 None:intergenic 20.0%
! AAATATTAGAGCTGTCAAAA+TGG - chr2.2:9507282-9507301 None:intergenic 25.0%
! AATAAGCTAAAAATGGCTTA+TGG - chr2.2:9507778-9507797 None:intergenic 25.0%
! ATTATGGGAAATATAGTACT+GGG + chr2.2:9507417-9507436 MS.gene043407:CDS 25.0%
! CAAGTTCTTATTACAAATGT+AGG + chr2.2:9508229-9508248 MS.gene043407:CDS 25.0%
! CACAAAAGTTTAAGTAAGTT+GGG + chr2.2:9507305-9507324 MS.gene043407:intron 25.0%
! TTACGGAAATAAGCTAAAAA+TGG - chr2.2:9507785-9507804 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr2.2:9507115-9507134 MS.gene043407:intron 25.0%
!! TTTTACCTCCTATATTGAAT+TGG - chr2.2:9507686-9507705 None:intergenic 25.0%
AAACTATCCTAGAGAACTTA+CGG - chr2.2:9507802-9507821 None:intergenic 30.0%
AAAGATAGTTCTCTCATTAC+AGG + chr2.2:9506845-9506864 MS.gene043407:intron 30.0%
AGGGTTAAATGTAAAAGAAC+TGG + chr2.2:9508166-9508185 MS.gene043407:intron 30.0%
ATATGTGGCCTAATAACAAA+TGG - chr2.2:9506956-9506975 None:intergenic 30.0%
ATTACAAGCCTAAAACGATT+GGG - chr2.2:9507019-9507038 None:intergenic 30.0%
CAATTTGGACAAACATTTGA+AGG + chr2.2:9508436-9508455 MS.gene043407:CDS 30.0%
CACATTGTCAAAACTAAAAC+TGG - chr2.2:9507343-9507362 None:intergenic 30.0%
CCTAGTCCATGTAAAATTAT+GGG + chr2.2:9507230-9507249 MS.gene043407:intron 30.0%
CTGTTTACTTTATCCAAACA+GGG + chr2.2:9508073-9508092 MS.gene043407:intron 30.0%
GATTATGGGAAATATAGTAC+TGG + chr2.2:9507416-9507435 MS.gene043407:CDS 30.0%
GCACAAAAGTTTAAGTAAGT+TGG + chr2.2:9507304-9507323 MS.gene043407:intron 30.0%
GTTAAATGTAAAAGAACTGG+TGG + chr2.2:9508169-9508188 MS.gene043407:CDS 30.0%
TAGTTCCAATTCAATATAGG+AGG + chr2.2:9507678-9507697 MS.gene043407:CDS 30.0%
TATGGACTTTCATCTGATTA+TGG + chr2.2:9507575-9507594 MS.gene043407:CDS 30.0%
TATGTGGCCTAATAACAAAT+GGG - chr2.2:9506955-9506974 None:intergenic 30.0%
TCAGATGAAAGTCCATAATT+TGG - chr2.2:9507572-9507591 None:intergenic 30.0%
TCCTAGTCCATGTAAAATTA+TGG + chr2.2:9507229-9507248 MS.gene043407:intron 30.0%
TCTTATTACAAATGTAGGGT+TGG + chr2.2:9508234-9508253 MS.gene043407:CDS 30.0%
TGAGAGAACTATCTTTATCT+TGG - chr2.2:9506841-9506860 None:intergenic 30.0%
! ACATTCACAAGGTTGATTAT+GGG + chr2.2:9507402-9507421 MS.gene043407:CDS 30.0%
! AGCACATTTTTGTTCAACAA+AGG + chr2.2:9507443-9507462 MS.gene043407:CDS 30.0%
! GCACATTTTTGTTCAACAAA+GGG + chr2.2:9507444-9507463 MS.gene043407:CDS 30.0%
! TGCATTTTGCTGCAATATAA+AGG - chr2.2:9507952-9507971 None:intergenic 30.0%
!!! CAGTTTTAGTTTTGACAATG+TGG + chr2.2:9507341-9507360 MS.gene043407:intron 30.0%
AAAAATACTTAGGCCCTGTT+TGG - chr2.2:9508089-9508108 None:intergenic 35.0%
AAAACAACCTCTATCCTTTG+AGG + chr2.2:9508357-9508376 MS.gene043407:CDS 35.0%
AAAGTGAAGGGAACTAAAAC+TGG + chr2.2:9508277-9508296 MS.gene043407:CDS 35.0%
ATGGCTTATGGATATCTGAT+AGG - chr2.2:9507766-9507785 None:intergenic 35.0%
ATTACAAATGTAGGGTTGGA+TGG + chr2.2:9508238-9508257 MS.gene043407:CDS 35.0%
CATGTAAAATTATGGGCCAT+GGG + chr2.2:9507237-9507256 MS.gene043407:intron 35.0%
CATTACAAGCCTAAAACGAT+TGG - chr2.2:9507020-9507039 None:intergenic 35.0%
CTTATTTCCGTAAGTTCTCT+AGG + chr2.2:9507792-9507811 MS.gene043407:intron 35.0%
CTTCTTACACAGATGAAGAA+TGG + chr2.2:9506792-9506811 MS.gene043407:intron 35.0%
GATGAAAGTCCATAATTTGG+AGG - chr2.2:9507569-9507588 None:intergenic 35.0%
GATTTCTGTCCTCCAAATTA+TGG + chr2.2:9507557-9507576 MS.gene043407:CDS 35.0%
GCTGTTTACTTTATCCAAAC+AGG + chr2.2:9508072-9508091 MS.gene043407:intron 35.0%
GGTTGTGAATTGATTACAGA+AGG + chr2.2:9507362-9507381 MS.gene043407:intron 35.0%
GTAACAGTAACAACTACAGA+AGG - chr2.2:9507536-9507555 None:intergenic 35.0%
TAAAACTGGATGGATACCAA+TGG + chr2.2:9508291-9508310 MS.gene043407:CDS 35.0%
TGTAATGTGAAGCACGAATA+CGG + chr2.2:9507033-9507052 MS.gene043407:intron 35.0%
! AGTTTAAGTAAGTTGGGTTC+CGG + chr2.2:9507311-9507330 MS.gene043407:intron 35.0%
! CCCATAATTTTACATGGACT+AGG - chr2.2:9507233-9507252 None:intergenic 35.0%
! GACATTCACAAGGTTGATTA+TGG + chr2.2:9507401-9507420 MS.gene043407:CDS 35.0%
! GATGTGTTGATCACATCTTA+TGG + chr2.2:9507495-9507514 MS.gene043407:CDS 35.0%
! TAAAAAGGCCCAATCGTTTT+AGG + chr2.2:9507008-9507027 MS.gene043407:intron 35.0%
! TAGAGCTGTCAAAATGGATT+AGG - chr2.2:9507276-9507295 None:intergenic 35.0%
! TTTCATCTGATTATGGTGGA+TGG + chr2.2:9507582-9507601 MS.gene043407:CDS 35.0%
! TTTTCAGATTAACCATGTCC+AGG - chr2.2:9507177-9507196 None:intergenic 35.0%
AAACTAAAACTGGTGAGTCC+CGG - chr2.2:9507333-9507352 None:intergenic 40.0%
ACTACGTAAATGAGCGGAAT+TGG + chr2.2:9506924-9506943 MS.gene043407:intron 40.0%
ACTTGTGATAGTCACCTCAA+AGG - chr2.2:9508374-9508393 None:intergenic 40.0%
AGTGGTTGCTGTAAAAGTGA+AGG + chr2.2:9508264-9508283 MS.gene043407:CDS 40.0%
ATACCAATGGCAAGGAATTG+GGG + chr2.2:9508304-9508323 MS.gene043407:CDS 40.0%
ATAGTCACCTCAAAGGATAG+AGG - chr2.2:9508367-9508386 None:intergenic 40.0%
ATGTGGTTGCAATGCTGTTA+AGG + chr2.2:9507976-9507995 MS.gene043407:intron 40.0%
ATTCCGCTCATTTACGTAGT+AGG - chr2.2:9506924-9506943 None:intergenic 40.0%
CACATCTTATGGTGCTTGAT+TGG + chr2.2:9507506-9507525 MS.gene043407:CDS 40.0%
CCATGTAAAATTATGGGCCA+TGG + chr2.2:9507236-9507255 MS.gene043407:intron 40.0%
GACATCTCAAAATGCTCACT+TGG - chr2.2:9507617-9507636 None:intergenic 40.0%
GATACCAATGGCAAGGAATT+GGG + chr2.2:9508303-9508322 MS.gene043407:CDS 40.0%
GGACTTTCATCTGATTATGG+TGG + chr2.2:9507578-9507597 MS.gene043407:CDS 40.0%
GGCTTGAAATTCACAATGAG+TGG + chr2.2:9508190-9508209 MS.gene043407:CDS 40.0%
GTGGTTGCTGTAAAAGTGAA+GGG + chr2.2:9508265-9508284 MS.gene043407:CDS 40.0%
TAACAGCATTGCAACCACAT+AGG - chr2.2:9507976-9507995 None:intergenic 40.0%
TGAAGGGAACTAAAACTGGA+TGG + chr2.2:9508281-9508300 MS.gene043407:CDS 40.0%
TGGTTATGGAGACATTCACA+AGG + chr2.2:9507391-9507410 MS.gene043407:CDS 40.0%
TGTCCTACTACGTAAATGAG+CGG + chr2.2:9506918-9506937 MS.gene043407:intron 40.0%
TTAAATTGCAGTTGCAGTCG+TGG + chr2.2:9507914-9507933 MS.gene043407:intron 40.0%
TTGATTACAGAAGGAGCTTG+TGG + chr2.2:9507371-9507390 MS.gene043407:intron 40.0%
! AACGATTGGGCCTTTTTATC+CGG - chr2.2:9507006-9507025 None:intergenic 40.0%
! CCATGGCCCATAATTTTACA+TGG - chr2.2:9507239-9507258 None:intergenic 40.0%
! GTTTAAGTAAGTTGGGTTCC+GGG + chr2.2:9507312-9507331 MS.gene043407:intron 40.0%
! TTTGAGGTGACTATCACAAG+TGG + chr2.2:9508373-9508392 MS.gene043407:CDS 40.0%
!! AAAAGTGTCCGTGGTTCATA+GGG + chr2.2:9507193-9507212 MS.gene043407:intron 40.0%
!! GTTAATCTGAAAAGTGTCCG+TGG + chr2.2:9507184-9507203 MS.gene043407:intron 40.0%
!! TATATGTGTCGGTGTCATGT+TGG + chr2.2:9507126-9507145 MS.gene043407:intron 40.0%
!! TCAAAATGGATTAGGCCAGA+TGG - chr2.2:9507268-9507287 None:intergenic 40.0%
!! TTCAACAAAGGGAGTACTTG+TGG + chr2.2:9507455-9507474 MS.gene043407:CDS 40.0%
AACACAAGCCCTATGAACCA+CGG - chr2.2:9507204-9507223 None:intergenic 45.0%
ACAATGTAGCTCCTGCAAAC+TGG + chr2.2:9508413-9508432 MS.gene043407:CDS 45.0%
ACAGAAGGAGCTTGTGGTTA+TGG + chr2.2:9507377-9507396 MS.gene043407:intron 45.0%
CAAGGAATTGGGGACAAAAC+TGG + chr2.2:9508314-9508333 MS.gene043407:CDS 45.0%
GATTAACCATGTCCAGGTGT+CGG - chr2.2:9507171-9507190 None:intergenic 45.0%
GCAGCAAAATGCAACCTATG+TGG + chr2.2:9507959-9507978 MS.gene043407:intron 45.0%
GGATACCAATGGCAAGGAAT+TGG + chr2.2:9508302-9508321 MS.gene043407:CDS 45.0%
GGGCTTGGCTAAAGAATATG+TGG - chr2.2:9506971-9506990 None:intergenic 45.0%
GTAAATGAGCGGAATTGGCT+TGG + chr2.2:9506929-9506948 MS.gene043407:intron 45.0%
TAGGACACACTAGACCAAAG+TGG - chr2.2:9506905-9506924 None:intergenic 45.0%
TGTCCAAATTGCCAGTTTGC+AGG - chr2.2:9508427-9508446 None:intergenic 45.0%
!! AATGGATTAGGCCAGATGGA+CGG - chr2.2:9507264-9507283 None:intergenic 45.0%
!! GAAAAGTGTCCGTGGTTCAT+AGG + chr2.2:9507192-9507211 MS.gene043407:intron 45.0%
!! GGCTTGGCCCATTTGTTATT+AGG + chr2.2:9506945-9506964 MS.gene043407:intron 45.0%
AGCTGTCAAATGAGCCGATC+CGG + chr2.2:9506878-9506897 MS.gene043407:intron 50.0%
CACACTAGACCAAAGTGGAC+CGG - chr2.2:9506900-9506919 None:intergenic 50.0%
CTACTGTGGGCCGGATAAAA+AGG + chr2.2:9506993-9507012 MS.gene043407:intron 50.0%
CTGGATGGATACCAATGGCA+AGG + chr2.2:9508296-9508315 MS.gene043407:CDS 50.0%
GCTCCTGCAAACTGGCAATT+TGG + chr2.2:9508421-9508440 MS.gene043407:CDS 50.0%
GCTGATGTGAGAGTTGTGCA+GGG + chr2.2:9508147-9508166 MS.gene043407:intron 50.0%
TAGACCAAAGTGGACCGGAT+CGG - chr2.2:9506895-9506914 None:intergenic 50.0%
TAGCCAAGCCCAACTACTGT+GGG + chr2.2:9506980-9506999 MS.gene043407:intron 50.0%
TGCTGATGTGAGAGTTGTGC+AGG + chr2.2:9508146-9508165 MS.gene043407:intron 50.0%
TGTAGGGTTGGATGGTGAAG+TGG + chr2.2:9508246-9508265 MS.gene043407:CDS 50.0%
TGTCCCCAATTCCTTGCCAT+TGG - chr2.2:9508310-9508329 None:intergenic 50.0%
TTAGCCAAGCCCAACTACTG+TGG + chr2.2:9506979-9506998 MS.gene043407:intron 50.0%
TTATCCGGCCCACAGTAGTT+GGG - chr2.2:9506991-9507010 None:intergenic 50.0%
TTTATCCGGCCCACAGTAGT+TGG - chr2.2:9506992-9507011 None:intergenic 50.0%
!! TGTCGGTGTCATGTTGGTGT+GGG + chr2.2:9507132-9507151 MS.gene043407:intron 50.0%
CAGCATGTCAGTGTCGTGTC+TGG - chr2.2:9507068-9507087 None:intergenic 55.0%
!! GTGTCGGTGTCATGTTGGTG+TGG + chr2.2:9507131-9507150 MS.gene043407:intron 55.0%
ACGTGTCCGACACCTGGACA+TGG + chr2.2:9507162-9507181 MS.gene043407:intron 60.0%
CAAGCCCAACTACTGTGGGC+CGG + chr2.2:9506984-9507003 MS.gene043407:intron 60.0%
CACAACACGTGTCCGACACC+TGG + chr2.2:9507156-9507175 MS.gene043407:intron 60.0%
TGAGCCGATCCGGTCCACTT+TGG + chr2.2:9506888-9506907 MS.gene043407:intron 60.0%
AGGCCAGATGGACGGACCCA+TGG - chr2.2:9507256-9507275 None:intergenic 65.0%
CGGCCCACAGTAGTTGGGCT+TGG - chr2.2:9506986-9507005 None:intergenic 65.0%
GGGCCATGGGTCCGTCCATC+TGG + chr2.2:9507250-9507269 MS.gene043407:intron 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 9506778 9508471 9506778 ID=MS.gene043407
chr2.2 mRNA 9506778 9508471 9506778 ID=MS.gene043407.t1;Parent=MS.gene043407
chr2.2 exon 9506778 9506787 9506778 ID=MS.gene043407.t1.exon1;Parent=MS.gene043407.t1
chr2.2 CDS 9506778 9506787 9506778 ID=cds.MS.gene043407.t1;Parent=MS.gene043407.t1
chr2.2 exon 9507381 9507699 9507381 ID=MS.gene043407.t1.exon2;Parent=MS.gene043407.t1
chr2.2 CDS 9507381 9507699 9507381 ID=cds.MS.gene043407.t1;Parent=MS.gene043407.t1
chr2.2 exon 9508168 9508471 9508168 ID=MS.gene043407.t1.exon3;Parent=MS.gene043407.t1
chr2.2 CDS 9508168 9508471 9508168 ID=cds.MS.gene043407.t1;Parent=MS.gene043407.t1
Gene Sequence

>MS.gene043407

ATGCAGCAAGGTTGCTTCTTACACAGATGAAGAATGGAAGTCTGCAACTGCAACGTACATCCAAGATAAAGATAGTTCTCTCATTACAGGTATTTCTTAGAGCTGTCAAATGAGCCGATCCGGTCCACTTTGGTCTAGTGTGTCCTACTACGTAAATGAGCGGAATTGGCTTGGCCCATTTGTTATTAGGCCACATATTCTTTAGCCAAGCCCAACTACTGTGGGCCGGATAAAAAGGCCCAATCGTTTTAGGCTTGTAATGTGAAGCACGAATACGGACACAGACACCAGACACGACACTGACATGCTGACACTGTTATTTGAGAAAATCACAAAATTCAGTGTAATTATATGTGTCGGTGTCATGTTGGTGTGGGACACAACACGTGTCCGACACCTGGACATGGTTAATCTGAAAAGTGTCCGTGGTTCATAGGGCTTGTGTTTTACATCCTAGTCCATGTAAAATTATGGGCCATGGGTCCGTCCATCTGGCCTAATCCATTTTGACAGCTCTAATATTTTTGCACAAAAGTTTAAGTAAGTTGGGTTCCGGGACTCACCAGTTTTAGTTTTGACAATGTGGTTGTGAATTGATTACAGAAGGAGCTTGTGGTTATGGAGACATTCACAAGGTTGATTATGGGAAATATAGTACTGGGCTAAGCACATTTTTGTTCAACAAAGGGAGTACTTGTGGTGCTTGTTATGAGATTAGATGTGTTGATCACATCTTATGGTGCTTGATTGGAAGTCCTTCTGTAGTTGTTACTGTTACAGATTTCTGTCCTCCAAATTATGGACTTTCATCTGATTATGGTGGATGGTGCAATTTTCCAAGTGAGCATTTTGAGATGTCAGAAGCTGCATTCGCTGAAATTGCTAAGAGAAAATCTGATATAGTTCCAATTCAATATAGGAGGTAAAACTAAAATGTTTTAATGAGACATATTGATTGACTATTAGAGAGAGCTTATAGAAACAACCTATCAGATATCCATAAGCCATTTTTAGCTTATTTCCGTAAGTTCTCTAGGATAGTTTATAAAACAACTTATAGCTTATGAAAACAATATCACTTTATTTTATTTAACGCTATAGAAATAGCTTATAAGCACTTATATGATAAAAATATTTTAAATTGCAGTTGCAGTCGTGGTTACGCTGTTAACCTTTATATTGCAGCAAAATGCAACCTATGTGGTTGCAATGCTGTTAAGGAGACATCAAAATTCTTTATATTGGGGCTGCCAATTTAAAACTATAAGTGCATATGTTATAAGTGCTTAATAAAGCTGTTTACTTTATCCAAACAGGGCCTAAGTATTTTTACATAAAAAAAAAAAATACAAAGAGTATTTTTTTTTTTGCTGATGTGAGAGTTGTGCAGGGTTAAATGTAAAAGAACTGGTGGCTTGAAATTCACAATGAGTGGAAGTGATTATTTCTATCAAGTTCTTATTACAAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTAAAAGTGAAGGGAACTAAAACTGGATGGATACCAATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTGAATCTTCAAAAACAACCTCTATCCTTTGAGGTGACTATCACAAGTGGAAAAACAATCACATCTTACAATGTAGCTCCTGCAAACTGGCAATTTGGACAAACATTTGAAGGTAAACAATTCTAG
Protein sequence

>MS.gene043407.t1

MQQEGACGYGDIHKVDYGKYSTGLSTFLFNKGSTCGACYEIRCVDHILWCLIGSPSVVVTVTDFCPPNYGLSSDYGGWCNFPSEHFEMSEAAFAEIAKRKSDIVPIQYRRVKCKRTGGLKFTMSGSDYFYQVLITNVGLDGEVVAVKVKGTKTGWIPMARNWGQNWHCNVNLQKQPLSFEVTITSGKTITSYNVAPANWQFGQTFEGKQF