Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043978.t1 | XP_003589266.1 | 98.3 | 470 | 8 | 0 | 3 | 472 | 30 | 499 | 1.80E-266 | 927.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043978.t1 | Q8S2E6 | 28.5 | 333 | 194 | 10 | 21 | 323 | 62 | 380 | 6.2e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043978.t1 | G7I4K0 | 98.3 | 470 | 8 | 0 | 3 | 472 | 30 | 499 | 1.3e-266 | 927.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043978.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063298 | MS.gene043978 | PPI |
| MS.gene24350 | MS.gene043978 | PPI |
| MS.gene24347 | MS.gene043978 | PPI |
| MS.gene24344 | MS.gene043978 | PPI |
| MS.gene67077 | MS.gene043978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043978.t1 | MTR_1g021270 | 98.298 | 470 | 8 | 0 | 3 | 472 | 30 | 499 | 0.0 | 961 |
| MS.gene043978.t1 | MTR_1g021270 | 54.676 | 139 | 63 | 0 | 195 | 333 | 451 | 589 | 1.04e-43 | 162 |
| MS.gene043978.t1 | MTR_1g021320 | 76.289 | 291 | 64 | 1 | 182 | 472 | 460 | 745 | 7.42e-148 | 443 |
| MS.gene043978.t1 | MTR_1g021320 | 33.434 | 332 | 173 | 8 | 20 | 335 | 539 | 838 | 1.03e-41 | 159 |
| MS.gene043978.t1 | MTR_1g021320 | 47.143 | 70 | 36 | 1 | 20 | 88 | 214 | 283 | 1.24e-14 | 77.0 |
| MS.gene043978.t1 | MTR_1g021320 | 36.937 | 111 | 59 | 3 | 4 | 103 | 41 | 151 | 6.03e-14 | 74.7 |
| MS.gene043978.t1 | MTR_1g021440 | 43.137 | 357 | 170 | 8 | 4 | 334 | 38 | 387 | 8.47e-82 | 259 |
| MS.gene043978.t1 | MTR_1g021440 | 43.529 | 340 | 175 | 7 | 4 | 334 | 38 | 369 | 1.10e-80 | 255 |
| MS.gene043978.t1 | MTR_1g021360 | 44.479 | 326 | 127 | 9 | 4 | 326 | 198 | 472 | 8.23e-77 | 248 |
| MS.gene043978.t1 | MTR_1g021360 | 38.372 | 86 | 52 | 1 | 4 | 88 | 41 | 126 | 2.60e-12 | 68.9 |
| MS.gene043978.t1 | MTR_1g021330 | 44.512 | 328 | 154 | 8 | 20 | 334 | 58 | 370 | 6.06e-76 | 243 |
| MS.gene043978.t1 | MTR_1g021295 | 69.753 | 162 | 48 | 1 | 168 | 328 | 56 | 217 | 1.60e-71 | 226 |
| MS.gene043978.t1 | MTR_1g021435 | 36.782 | 348 | 182 | 9 | 4 | 333 | 38 | 365 | 5.08e-61 | 204 |
| MS.gene043978.t1 | MTR_1g021380 | 38.671 | 331 | 160 | 9 | 20 | 340 | 53 | 350 | 6.38e-59 | 197 |
| MS.gene043978.t1 | MTR_1g021400 | 37.072 | 321 | 174 | 5 | 20 | 333 | 62 | 361 | 5.52e-58 | 196 |
| MS.gene043978.t1 | MTR_1g021410 | 36.657 | 341 | 181 | 9 | 4 | 333 | 38 | 354 | 8.28e-56 | 190 |
| MS.gene043978.t1 | MTR_1g021350 | 66.667 | 87 | 27 | 1 | 250 | 334 | 247 | 333 | 2.51e-29 | 118 |
| MS.gene043978.t1 | MTR_1g021350 | 38.000 | 100 | 60 | 2 | 4 | 101 | 37 | 136 | 3.04e-13 | 71.2 |
| MS.gene043978.t1 | MTR_1g021440 | 33.459 | 266 | 144 | 8 | 4 | 243 | 38 | 296 | 1.23e-28 | 115 |
| MS.gene043978.t1 | MTR_6g036740 | 69.333 | 75 | 22 | 1 | 247 | 320 | 109 | 183 | 4.02e-28 | 114 |
| MS.gene043978.t1 | MTR_1g021440 | 33.333 | 249 | 149 | 7 | 4 | 243 | 38 | 278 | 8.92e-28 | 112 |
| MS.gene043978.t1 | MTR_7g050710 | 28.165 | 316 | 171 | 10 | 3 | 311 | 28 | 294 | 1.53e-24 | 104 |
| MS.gene043978.t1 | MTR_1g035460 | 25.868 | 317 | 200 | 6 | 4 | 320 | 2 | 283 | 4.46e-24 | 103 |
| MS.gene043978.t1 | MTR_7g050560 | 25.080 | 311 | 168 | 8 | 4 | 311 | 29 | 277 | 8.27e-19 | 87.4 |
| MS.gene043978.t1 | MTR_8g103940 | 23.053 | 321 | 181 | 11 | 3 | 312 | 54 | 319 | 1.03e-18 | 89.0 |
| MS.gene043978.t1 | MTR_7g050720 | 23.123 | 333 | 210 | 8 | 4 | 329 | 26 | 319 | 4.39e-16 | 79.3 |
| MS.gene043978.t1 | MTR_1g021290 | 37.815 | 119 | 62 | 4 | 20 | 130 | 187 | 301 | 2.39e-15 | 77.8 |
| MS.gene043978.t1 | MTR_4g068320 | 42.667 | 75 | 43 | 0 | 3 | 77 | 21 | 95 | 1.44e-14 | 75.9 |
| MS.gene043978.t1 | MTR_1g034240 | 26.718 | 131 | 96 | 0 | 3 | 133 | 22 | 152 | 9.07e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043978.t1 | AT3G18990 | 25.434 | 346 | 212 | 12 | 3 | 328 | 21 | 340 | 1.56e-21 | 96.3 |
| MS.gene043978.t1 | AT3G18990 | 25.444 | 338 | 206 | 12 | 3 | 320 | 21 | 332 | 3.63e-21 | 94.7 |
| MS.gene043978.t1 | AT4G33280 | 23.582 | 335 | 217 | 12 | 4 | 309 | 39 | 363 | 8.44e-13 | 70.5 |
| MS.gene043978.t1 | AT5G42700 | 30.556 | 144 | 89 | 3 | 189 | 327 | 42 | 179 | 3.09e-12 | 65.9 |
| MS.gene043978.t1 | AT5G42700 | 30.556 | 144 | 89 | 3 | 189 | 327 | 87 | 224 | 4.81e-12 | 66.2 |
Find 83 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGAGGTGATTTCTTCTT+TGG | 0.181730 | 1.3:-3425554 | MS.gene043978:CDS |
| CATTTCACCGTGCAAGTATT+TGG | 0.220691 | 1.3:-3425667 | MS.gene043978:CDS |
| GAGCTAACTTTAGGTTTCTT+TGG | 0.250603 | 1.3:+3423832 | None:intergenic |
| GCATATATCTGGAAGTATTA+TGG | 0.252813 | 1.3:+3423854 | None:intergenic |
| TGCGGATTAGTTTCATTAAC+TGG | 0.291460 | 1.3:-3425829 | MS.gene043978:CDS |
| AGGTTTCTTTGGCATATATC+TGG | 0.305794 | 1.3:+3423843 | None:intergenic |
| CTGCACTTTGAGCTAACTTT+AGG | 0.312808 | 1.3:+3423823 | None:intergenic |
| TGGTCTAACCAACTCATAAT+TGG | 0.316491 | 1.3:+3425444 | None:intergenic |
| ATAATCTTTGTCTTGCAGTT+TGG | 0.320704 | 1.3:+3424135 | None:intergenic |
| ACTAGCTGAACATTCTTTGC+AGG | 0.330880 | 1.3:+3425393 | None:intergenic |
| CTTCCTTCCCACTTCTATAC+AGG | 0.338352 | 1.3:+3425139 | None:intergenic |
| TGTGACATCGAAAATTGATA+TGG | 0.348004 | 1.3:+3424162 | None:intergenic |
| TTTACAATATGGCGACCTTT+TGG | 0.367843 | 1.3:-3425713 | MS.gene043978:CDS |
| GGAGATCATCATTTACAATA+TGG | 0.369169 | 1.3:-3425724 | MS.gene043978:CDS |
| ATTTCTTCTTTGGATGTTGT+TGG | 0.376542 | 1.3:-3425544 | MS.gene043978:CDS |
| TTCTCAAACCAGCTTTAGCC+TGG | 0.378926 | 1.3:+3423336 | None:intergenic |
| GTTTCTCTGATCATACTGAT+TGG | 0.381923 | 1.3:+3425424 | None:intergenic |
| TTGAATTCAATGGCTAAAAC+AGG | 0.382436 | 1.3:+3423751 | None:intergenic |
| GAGCCTGAGTTGGCTATTGC+TGG | 0.383202 | 1.3:-3425478 | MS.gene043978:CDS |
| ACCGGATTTCTTGAATTCAA+TGG | 0.386457 | 1.3:+3423741 | None:intergenic |
| GAAAAGAGGACGTAAATGAT+TGG | 0.410999 | 1.3:+3425049 | None:intergenic |
| GCCATTGAATTCAAGAAATC+CGG | 0.411437 | 1.3:-3423742 | MS.gene043978:CDS |
| TTAAACTTCAATAATATTGA+AGG | 0.413589 | 1.3:-3425589 | MS.gene043978:CDS |
| CTTGTATGCACTCTAGTTGT+TGG | 0.420097 | 1.3:+3424069 | None:intergenic |
| ATGTCGTGCCCTCCATTTGA+TGG | 0.432582 | 1.3:+3425851 | None:intergenic |
| GATTATTCTTTATAATTTGA+AGG | 0.433632 | 1.3:-3424118 | MS.gene043978:CDS |
| TTACTATTTCCTGTTTGAAA+AGG | 0.440868 | 1.3:+3425358 | None:intergenic |
| CGTGTTCGCATTGCTGAGGT+TGG | 0.454549 | 1.3:-3423949 | MS.gene043978:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.462248 | 1.3:+3425035 | None:intergenic |
| CGAAGTAGTTGAAGCTCTAC+CGG | 0.467583 | 1.3:+3423723 | None:intergenic |
| TCATGGATGGTCAACATTTG+TGG | 0.468855 | 1.3:-3425746 | MS.gene043978:CDS |
| CTGGTCCTAGTGGAAATACT+TGG | 0.471402 | 1.3:-3425810 | MS.gene043978:CDS |
| CACTCTATGTGGAGGATGGA+TGG | 0.472108 | 1.3:-3424043 | MS.gene043978:CDS |
| TTCAACTACTTCGAAGAAGA+TGG | 0.472680 | 1.3:-3423713 | MS.gene043978:CDS |
| CTAAGTTCCCAGGCTAAAGC+TGG | 0.489551 | 1.3:-3423344 | MS.gene043978:CDS |
| AAAAGAGGACGTAAATGATT+GGG | 0.490021 | 1.3:+3425050 | None:intergenic |
| ATTTGATGGACAAAACCATC+TGG | 0.494945 | 1.3:+3425865 | None:intergenic |
| ATACGAACCACTGACATTGA+AGG | 0.499194 | 1.3:+3425002 | None:intergenic |
| AATCATCTGTTCTTCCATCA+TGG | 0.499739 | 1.3:-3425763 | MS.gene043978:CDS |
| GCAAGTTCGATTAGTTGAGC+AGG | 0.500057 | 1.3:-3425788 | MS.gene043978:CDS |
| ATTATTCTTTATAATTTGAA+GGG | 0.502841 | 1.3:-3424117 | MS.gene043978:CDS |
| GTGCGACGCCATCGAGAACC+AGG | 0.511386 | 1.3:-3425500 | MS.gene043978:CDS |
| GGAAATAGTAATGAAGTTGA+AGG | 0.516580 | 1.3:-3425346 | MS.gene043978:intron |
| CATGGATGGTCAACATTTGT+GGG | 0.520091 | 1.3:-3425745 | MS.gene043978:CDS |
| TCTTCAACACGATGTTTCCT+CGG | 0.530379 | 1.3:+3423371 | None:intergenic |
| CAATAGCCAACTCAGGCTCC+TGG | 0.530813 | 1.3:+3425482 | None:intergenic |
| AAATCTATCCAATTATGAGT+TGG | 0.532358 | 1.3:-3425452 | MS.gene043978:CDS |
| TCAACTACTTCGAAGAAGAT+GGG | 0.533657 | 1.3:-3423712 | MS.gene043978:CDS |
| CGTGGCAATAGCATAAAAGT+TGG | 0.540845 | 1.3:-3424012 | MS.gene043978:CDS |
| CTCAGGCTCCTGGTTCTCGA+TGG | 0.547387 | 1.3:+3425492 | None:intergenic |
| CAAATGTTGACCATCCATGA+TGG | 0.553915 | 1.3:+3425749 | None:intergenic |
| CCTCGTATCTGAAAACCAAA+AGG | 0.559251 | 1.3:+3425698 | None:intergenic |
| TTCCTGTTTGAAAAGGAACA+TGG | 0.559808 | 1.3:+3425365 | None:intergenic |
| ATCTGTTCTTCCATCATGGA+TGG | 0.561421 | 1.3:-3425759 | MS.gene043978:CDS |
| TTACCAGCAATAGCCAACTC+AGG | 0.564889 | 1.3:+3425475 | None:intergenic |
| ATAATTTGAAGGGAGAACAC+TGG | 0.567172 | 1.3:-3424107 | MS.gene043978:CDS |
| AATGGGTTAGACTGCCAGGT+TGG | 0.568245 | 1.3:-3423922 | MS.gene043978:CDS |
| CAAATGGAGGGCACGACATG+CGG | 0.572358 | 1.3:-3425847 | MS.gene043978:CDS |
| CGAGAACCAGGAGCCTGAGT+TGG | 0.572650 | 1.3:-3425488 | MS.gene043978:CDS |
| GTTTCATTAACTGGTCCTAG+TGG | 0.577634 | 1.3:-3425820 | MS.gene043978:CDS |
| ATGAAGAAGTTCAATGTCAG+TGG | 0.577831 | 1.3:-3423242 | MS.gene043978:CDS |
| TGTCAGTGGTTCGTATACTC+TGG | 0.580584 | 1.3:-3424995 | MS.gene043978:intron |
| CATACAAGTCACACTCTATG+TGG | 0.582424 | 1.3:-3424054 | MS.gene043978:CDS |
| GCAGCAATCCTGTATAGAAG+TGG | 0.586525 | 1.3:-3425147 | MS.gene043978:CDS |
| GTCACACTCTATGTGGAGGA+TGG | 0.589858 | 1.3:-3424047 | MS.gene043978:CDS |
| TCTCAAACCAGCTTTAGCCT+GGG | 0.589973 | 1.3:+3423337 | None:intergenic |
| TGAAGATGAACTAAGTTCCC+AGG | 0.590157 | 1.3:-3423354 | MS.gene043978:CDS |
| GAGATGTTCCGAAGAAAATG+AGG | 0.590900 | 1.3:-3425522 | MS.gene043978:CDS |
| ATCAAAACCTTCAATGTCAG+TGG | 0.599816 | 1.3:-3425009 | MS.gene043978:CDS |
| TGTCAGTGGATCATACACTT+TGG | 0.614461 | 1.3:-3423228 | None:intergenic |
| CAGCAATCCTGTATAGAAGT+GGG | 0.617200 | 1.3:-3425146 | MS.gene043978:CDS |
| CAACTACTTCGAAGAAGATG+GGG | 0.619729 | 1.3:-3423711 | MS.gene043978:CDS |
| ACTTGCCAAGTATTTCCACT+AGG | 0.637449 | 1.3:+3425805 | None:intergenic |
| ATTACGTGTTCGCATTGCTG+AGG | 0.639477 | 1.3:-3423953 | MS.gene043978:CDS |
| AATCCTGTATAGAAGTGGGA+AGG | 0.661650 | 1.3:-3425142 | MS.gene043978:CDS |
| ATTCTCACCAAATACTTGCA+CGG | 0.664539 | 1.3:+3425660 | None:intergenic |
| TAGCTCAAAGTGCAGAACGA+AGG | 0.671058 | 1.3:-3423815 | MS.gene043978:CDS |
| ACAAGTCACACTCTATGTGG+AGG | 0.673956 | 1.3:-3424051 | MS.gene043978:CDS |
| TTAATGCAGAGAGTTCCAGA+TGG | 0.692519 | 1.3:-3425880 | MS.gene043978:CDS |
| AGGACAGAAAAGTGATGCTG+AGG | 0.705655 | 1.3:-3425569 | MS.gene043978:CDS |
| AAGCTCCGCTGAGAATATCG+TGG | 0.711691 | 1.3:+3425112 | None:intergenic |
| AAACAAAGACAGCTGTACCG+AGG | 0.720792 | 1.3:-3423388 | MS.gene043978:intron |
| GATGACCACGATATTCTCAG+CGG | 0.779588 | 1.3:-3425117 | MS.gene043978:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTCTTTATAATTTGAA+GGG | - | chr1.3:3424989-3425008 | MS.gene043978:intron | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1.3:3424082-3424101 | None:intergenic | 10.0% |
| !! | GATAAATTATAAATGACAAA+AGG | + | chr1.3:3424147-3424166 | None:intergenic | 15.0% |
| !! | GATTATTCTTTATAATTTGA+AGG | - | chr1.3:3424988-3425007 | MS.gene043978:intron | 15.0% |
| !! | TAAAATAAGTCAATCAAAAT+GGG | - | chr1.3:3424614-3424633 | MS.gene043978:intron | 15.0% |
| !! | TTAAACTTCAATAATATTGA+AGG | - | chr1.3:3423517-3423536 | MS.gene043978:intron | 15.0% |
| !!! | GTTTCTTATTTTAAGTTTAA+TGG | - | chr1.3:3424828-3424847 | MS.gene043978:intron | 15.0% |
| !!! | TATTTTTTTTACAATTGCAA+TGG | - | chr1.3:3425588-3425607 | MS.gene043978:CDS | 15.0% |
| !! | AAGATAAAACAGCATTATTT+GGG | + | chr1.3:3424171-3424190 | None:intergenic | 20.0% |
| !! | CTAAAATAAGTCAATCAAAA+TGG | - | chr1.3:3424613-3424632 | MS.gene043978:intron | 20.0% |
| !! | TTAAATAAAATGATAAGCTC+TGG | + | chr1.3:3423907-3423926 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1.3:3424074-3424093 | None:intergenic | 20.0% |
| !!! | ATTTTCACAAAATTAGGAAA+TGG | + | chr1.3:3425843-3425862 | None:intergenic | 20.0% |
| !!! | TTCATGATTTTCACAAAATT+AGG | + | chr1.3:3425849-3425868 | None:intergenic | 20.0% |
| ! | AAATCTATCCAATTATGAGT+TGG | - | chr1.3:3423654-3423673 | MS.gene043978:intron | 25.0% |
| ! | ATTTGTTTGCATAGCTATTT+AGG | + | chr1.3:3424470-3424489 | None:intergenic | 25.0% |
| ! | GAAGATAAAACAGCATTATT+TGG | + | chr1.3:3424172-3424191 | None:intergenic | 25.0% |
| ! | TAGTGAAAGAAAGAACAAAA+AGG | - | chr1.3:3425622-3425641 | MS.gene043978:CDS | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr1.3:3424565-3424584 | None:intergenic | 25.0% |
| ! | TTACTATTTCCTGTTTGAAA+AGG | + | chr1.3:3423751-3423770 | None:intergenic | 25.0% |
| !! | AATATAATTTGCCATCTAGT+GGG | + | chr1.3:3425479-3425498 | None:intergenic | 25.0% |
| AAAAGAGGACGTAAATGATT+GGG | + | chr1.3:3424059-3424078 | None:intergenic | 30.0% | |
| AAAAGCTTCCCATAAAAAGA+CGG | - | chr1.3:3425432-3425451 | MS.gene043978:CDS | 30.0% | |
| AAATGTCATAGCAGTAGAAA+AGG | + | chr1.3:3424654-3424673 | None:intergenic | 30.0% | |
| AGCAAATTCGATTTCATTCT+GGG | - | chr1.3:3423786-3423805 | MS.gene043978:CDS | 30.0% | |
| ATAAAGGGAGAAACACTATT+TGG | + | chr1.3:3424233-3424252 | None:intergenic | 30.0% | |
| ATAAGAAACATGTGAGTAGA+AGG | + | chr1.3:3424817-3424836 | None:intergenic | 30.0% | |
| ATAATCTTTGTCTTGCAGTT+TGG | + | chr1.3:3424974-3424993 | None:intergenic | 30.0% | |
| ATCTTCTTGAGAAACTGATA+TGG | - | chr1.3:3424186-3424205 | MS.gene043978:intron | 30.0% | |
| ATTTCTTCTTTGGATGTTGT+TGG | - | chr1.3:3423562-3423581 | MS.gene043978:intron | 30.0% | |
| GACTGAAGTCATAATTTGAA+AGG | + | chr1.3:3425685-3425704 | None:intergenic | 30.0% | |
| GGAAATAGTAATGAAGTTGA+AGG | - | chr1.3:3423760-3423779 | MS.gene043978:CDS | 30.0% | |
| GGAGATCATCATTTACAATA+TGG | - | chr1.3:3423382-3423401 | MS.gene043978:intron | 30.0% | |
| TAAAGGGAGAAACACTATTT+GGG | + | chr1.3:3424232-3424251 | None:intergenic | 30.0% | |
| TAGCAAATTCGATTTCATTC+TGG | - | chr1.3:3423785-3423804 | MS.gene043978:CDS | 30.0% | |
| TGAATCTAAAAGTTTGAGCA+AGG | + | chr1.3:3424770-3424789 | None:intergenic | 30.0% | |
| TGTGACATCGAAAATTGATA+TGG | + | chr1.3:3424947-3424966 | None:intergenic | 30.0% | |
| TTGAATTCAATGGCTAAAAC+AGG | + | chr1.3:3425358-3425377 | None:intergenic | 30.0% | |
| ! | AAGGTAGAAACTTTTACAGA+AGG | + | chr1.3:3425666-3425685 | None:intergenic | 30.0% |
| ! | AGACAAGTATCAGTTTTCTA+GGG | + | chr1.3:3423846-3423865 | None:intergenic | 30.0% |
| ! | CAATATAATTTGCCATCTAG+TGG | + | chr1.3:3425480-3425499 | None:intergenic | 30.0% |
| ! | TAAGCTCTGGCATAAATATA+AGG | + | chr1.3:3423894-3423913 | None:intergenic | 30.0% |
| ! | TAGACAAGTATCAGTTTTCT+AGG | + | chr1.3:3423847-3423866 | None:intergenic | 30.0% |
| !! | GCATATATCTGGAAGTATTA+TGG | + | chr1.3:3425255-3425274 | None:intergenic | 30.0% |
| AAAGCTTCCCATAAAAAGAC+GGG | - | chr1.3:3425433-3425452 | MS.gene043978:CDS | 35.0% | |
| AATCATCTGTTCTTCCATCA+TGG | - | chr1.3:3423343-3423362 | MS.gene043978:CDS | 35.0% | |
| ACCGGATTTCTTGAATTCAA+TGG | + | chr1.3:3425368-3425387 | None:intergenic | 35.0% | |
| ACTAGGACTTAGTATCAGTA+TGG | + | chr1.3:3424341-3424360 | None:intergenic | 35.0% | |
| AGAATAGTTCAAATCTACCC+AGG | + | chr1.3:3424375-3424394 | None:intergenic | 35.0% | |
| AGGTTTCTTTGGCATATATC+TGG | + | chr1.3:3425266-3425285 | None:intergenic | 35.0% | |
| AGTGTTTCTCCCTTTATGTA+TGG | - | chr1.3:3424236-3424255 | MS.gene043978:intron | 35.0% | |
| ATAATTTGAAGGGAGAACAC+TGG | - | chr1.3:3424999-3425018 | MS.gene043978:CDS | 35.0% | |
| ATCAAAACCTTCAATGTCAG+TGG | - | chr1.3:3424097-3424116 | MS.gene043978:CDS | 35.0% | |
| ATGAAGAAGTTCAATGTCAG+TGG | - | chr1.3:3425864-3425883 | MS.gene043978:CDS | 35.0% | |
| ATTCTCACCAAATACTTGCA+CGG | + | chr1.3:3423449-3423468 | None:intergenic | 35.0% | |
| ATTGCTGAGGTTGGAAAAAA+TGG | - | chr1.3:3425166-3425185 | MS.gene043978:intron | 35.0% | |
| CTTGAGAAACTGATATGGTT+GGG | - | chr1.3:3424191-3424210 | MS.gene043978:intron | 35.0% | |
| GAAAAGAGGACGTAAATGAT+TGG | + | chr1.3:3424060-3424079 | None:intergenic | 35.0% | |
| GACAAGAGTAGTAGTAGAAA+AGG | + | chr1.3:3424748-3424767 | None:intergenic | 35.0% | |
| GCCATTGAATTCAAGAAATC+CGG | - | chr1.3:3425364-3425383 | MS.gene043978:CDS | 35.0% | |
| GTTTCTCTGATCATACTGAT+TGG | + | chr1.3:3423685-3423704 | None:intergenic | 35.0% | |
| TACCATCCTCCATACATAAA+GGG | + | chr1.3:3424248-3424267 | None:intergenic | 35.0% | |
| TCAACTACTTCGAAGAAGAT+GGG | - | chr1.3:3425394-3425413 | MS.gene043978:CDS | 35.0% | |
| TCAGCAAGAGATTTGTGTTA+AGG | + | chr1.3:3424891-3424910 | None:intergenic | 35.0% | |
| TCTTGAGAAACTGATATGGT+TGG | - | chr1.3:3424190-3424209 | MS.gene043978:intron | 35.0% | |
| TGGTCTAACCAACTCATAAT+TGG | + | chr1.3:3423665-3423684 | None:intergenic | 35.0% | |
| TTACCATCCTCCATACATAA+AGG | + | chr1.3:3424249-3424268 | None:intergenic | 35.0% | |
| TTAGTATCAGTATGGATGGA+TGG | + | chr1.3:3424333-3424352 | None:intergenic | 35.0% | |
| TTCAACTACTTCGAAGAAGA+TGG | - | chr1.3:3425393-3425412 | MS.gene043978:CDS | 35.0% | |
| TTCCTGTTTGAAAAGGAACA+TGG | + | chr1.3:3423744-3423763 | None:intergenic | 35.0% | |
| TTGAGAAACTGATATGGTTG+GGG | - | chr1.3:3424192-3424211 | MS.gene043978:intron | 35.0% | |
| TTGCTGAGGTTGGAAAAAAT+GGG | - | chr1.3:3425167-3425186 | MS.gene043978:intron | 35.0% | |
| ! | AAACCTTACCCGTCTTTTTA+TGG | + | chr1.3:3425444-3425463 | None:intergenic | 35.0% |
| ! | AACCTTACCCGTCTTTTTAT+GGG | + | chr1.3:3425443-3425462 | None:intergenic | 35.0% |
| ! | ATTTGATGGACAAAACCATC+TGG | + | chr1.3:3423244-3423263 | None:intergenic | 35.0% |
| ! | GAGCTAACTTTAGGTTTCTT+TGG | + | chr1.3:3425277-3425296 | None:intergenic | 35.0% |
| ! | TTTACAATATGGCGACCTTT+TGG | - | chr1.3:3423393-3423412 | MS.gene043978:intron | 35.0% |
| !! | TGCGGATTAGTTTCATTAAC+TGG | - | chr1.3:3423277-3423296 | MS.gene043978:CDS | 35.0% |
| !! | TTTATGGGAAGCTTTTGACT+TGG | + | chr1.3:3425428-3425447 | None:intergenic | 35.0% |
| !!! | AGATGGTTTTGTCCATCAAA+TGG | - | chr1.3:3423243-3423262 | MS.gene043978:CDS | 35.0% |
| !!! | CTTTTGGTTTTCAGATACGA+GGG | - | chr1.3:3423409-3423428 | MS.gene043978:intron | 35.0% |
| !!! | TTATGGGAAGCTTTTGACTT+GGG | + | chr1.3:3425427-3425446 | None:intergenic | 35.0% |
| AATCCTGTATAGAAGTGGGA+AGG | - | chr1.3:3423964-3423983 | MS.gene043978:CDS | 40.0% | |
| ACTAGCTGAACATTCTTTGC+AGG | + | chr1.3:3423716-3423735 | None:intergenic | 40.0% | |
| ACTTGCCAAGTATTTCCACT+AGG | + | chr1.3:3423304-3423323 | None:intergenic | 40.0% | |
| AGTAGAAAAGGTCTCGAACT+TGG | + | chr1.3:3424642-3424661 | None:intergenic | 40.0% | |
| AGTGTGATGTAGAAGCTTCT+TGG | + | chr1.3:3424715-3424734 | None:intergenic | 40.0% | |
| ATACGAACCACTGACATTGA+AGG | + | chr1.3:3424107-3424126 | None:intergenic | 40.0% | |
| ATCTGTTCTTCCATCATGGA+TGG | - | chr1.3:3423347-3423366 | MS.gene043978:CDS | 40.0% | |
| CAAATGTTGACCATCCATGA+TGG | + | chr1.3:3423360-3423379 | None:intergenic | 40.0% | |
| CAACTACTTCGAAGAAGATG+GGG | - | chr1.3:3425395-3425414 | MS.gene043978:CDS | 40.0% | |
| CAGCAATCCTGTATAGAAGT+GGG | - | chr1.3:3423960-3423979 | MS.gene043978:CDS | 40.0% | |
| CATACAAGTCACACTCTATG+TGG | - | chr1.3:3425052-3425071 | MS.gene043978:CDS | 40.0% | |
| CATGGATGGTCAACATTTGT+GGG | - | chr1.3:3423361-3423380 | MS.gene043978:CDS | 40.0% | |
| CATTTCACCGTGCAAGTATT+TGG | - | chr1.3:3423439-3423458 | MS.gene043978:intron | 40.0% | |
| CCTAGTTAATGAGTCAACCT+GGG | - | chr1.3:3424355-3424374 | MS.gene043978:intron | 40.0% | |
| CCTCGTATCTGAAAACCAAA+AGG | + | chr1.3:3423411-3423430 | None:intergenic | 40.0% | |
| CGTGGCAATAGCATAAAAGT+TGG | - | chr1.3:3425094-3425113 | MS.gene043978:CDS | 40.0% | |
| CTGCACTTTGAGCTAACTTT+AGG | + | chr1.3:3425286-3425305 | None:intergenic | 40.0% | |
| CTTGTATGCACTCTAGTTGT+TGG | + | chr1.3:3425040-3425059 | None:intergenic | 40.0% | |
| GAGATGTTCCGAAGAAAATG+AGG | - | chr1.3:3423584-3423603 | MS.gene043978:intron | 40.0% | |
| GGACTTAGTATCAGTATGGA+TGG | + | chr1.3:3424337-3424356 | None:intergenic | 40.0% | |
| GTAGAAAAGGTCTCGAACTT+GGG | + | chr1.3:3424641-3424660 | None:intergenic | 40.0% | |
| GTTTCATTAACTGGTCCTAG+TGG | - | chr1.3:3423286-3423305 | MS.gene043978:CDS | 40.0% | |
| GTTTCTCCCTTTATGTATGG+AGG | - | chr1.3:3424239-3424258 | MS.gene043978:intron | 40.0% | |
| TACTTAGTGAAGATGCTGCT+TGG | - | chr1.3:3424434-3424453 | MS.gene043978:intron | 40.0% | |
| TAGAAAAGGTCTCGAACTTG+GGG | + | chr1.3:3424640-3424659 | None:intergenic | 40.0% | |
| TCATGGATGGTCAACATTTG+TGG | - | chr1.3:3423360-3423379 | MS.gene043978:CDS | 40.0% | |
| TCCTAGTTAATGAGTCAACC+TGG | - | chr1.3:3424354-3424373 | MS.gene043978:intron | 40.0% | |
| TCTTCAACACGATGTTTCCT+CGG | + | chr1.3:3425738-3425757 | None:intergenic | 40.0% | |
| TGAAGATGAACTAAGTTCCC+AGG | - | chr1.3:3425752-3425771 | MS.gene043978:CDS | 40.0% | |
| TGCTGAGGTGATTTCTTCTT+TGG | - | chr1.3:3423552-3423571 | MS.gene043978:intron | 40.0% | |
| TTCCCATAAAAAGACGGGTA+AGG | - | chr1.3:3425438-3425457 | MS.gene043978:CDS | 40.0% | |
| ! | GTCCATGTTCCTTTTCAAAC+AGG | - | chr1.3:3423739-3423758 | MS.gene043978:CDS | 40.0% |
| !! | AAAAAATGGGTTAGACTGCC+AGG | - | chr1.3:3425180-3425199 | MS.gene043978:intron | 40.0% |
| !! | GGTTTTGTCCATCAAATGGA+GGG | - | chr1.3:3423247-3423266 | MS.gene043978:CDS | 40.0% |
| !!! | CCTTTTGGTTTTCAGATACG+AGG | - | chr1.3:3423408-3423427 | MS.gene043978:intron | 40.0% |
| !!! | TACAAGCTAGTTTTCCAACC+TGG | + | chr1.3:3425201-3425220 | None:intergenic | 40.0% |
| !!! | TATGGGAAGCTTTTGACTTG+GGG | + | chr1.3:3425426-3425445 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTCCATCAAATGG+AGG | - | chr1.3:3423246-3423265 | MS.gene043978:CDS | 40.0% |
| AAACAAAGACAGCTGTACCG+AGG | - | chr1.3:3425718-3425737 | MS.gene043978:CDS | 45.0% | |
| ACAAGTCACACTCTATGTGG+AGG | - | chr1.3:3425055-3425074 | MS.gene043978:CDS | 45.0% | |
| AGGACAGAAAAGTGATGCTG+AGG | - | chr1.3:3423537-3423556 | MS.gene043978:intron | 45.0% | |
| ATTACGTGTTCGCATTGCTG+AGG | - | chr1.3:3425153-3425172 | MS.gene043978:intron | 45.0% | |
| CCAACATGCATTGAAGTGCA+AGG | + | chr1.3:3424401-3424420 | None:intergenic | 45.0% | |
| CCTTGCACTTCAATGCATGT+TGG | - | chr1.3:3424398-3424417 | MS.gene043978:intron | 45.0% | |
| CGAAGTAGTTGAAGCTCTAC+CGG | + | chr1.3:3425386-3425405 | None:intergenic | 45.0% | |
| CTCCCTTTATGTATGGAGGA+TGG | - | chr1.3:3424243-3424262 | MS.gene043978:intron | 45.0% | |
| CTGGTCCTAGTGGAAATACT+TGG | - | chr1.3:3423296-3423315 | MS.gene043978:CDS | 45.0% | |
| CTTCCTTCCCACTTCTATAC+AGG | + | chr1.3:3423970-3423989 | None:intergenic | 45.0% | |
| GATGACCACGATATTCTCAG+CGG | - | chr1.3:3423989-3424008 | MS.gene043978:CDS | 45.0% | |
| GCAGCAATCCTGTATAGAAG+TGG | - | chr1.3:3423959-3423978 | MS.gene043978:CDS | 45.0% | |
| TAGCTCAAAGTGCAGAACGA+AGG | - | chr1.3:3425291-3425310 | MS.gene043978:intron | 45.0% | |
| TCCTCTATTTGCCCACTAGA+TGG | - | chr1.3:3425465-3425484 | MS.gene043978:CDS | 45.0% | |
| TGTCAGTGGTTCGTATACTC+TGG | - | chr1.3:3424111-3424130 | MS.gene043978:CDS | 45.0% | |
| TTACCAGCAATAGCCAACTC+AGG | + | chr1.3:3423634-3423653 | None:intergenic | 45.0% | |
| ! | CCCAGGTTGACTCATTAACT+AGG | + | chr1.3:3424358-3424377 | None:intergenic | 45.0% |
| ! | GCAAGTTCGATTAGTTGAGC+AGG | - | chr1.3:3423318-3423337 | MS.gene043978:CDS | 45.0% |
| ! | TCTCAAACCAGCTTTAGCCT+GGG | + | chr1.3:3425772-3425791 | None:intergenic | 45.0% |
| ! | TTCTCAAACCAGCTTTAGCC+TGG | + | chr1.3:3425773-3425792 | None:intergenic | 45.0% |
| !!! | ATGGGAAGCTTTTGACTTGG+GGG | + | chr1.3:3425425-3425444 | None:intergenic | 45.0% |
| AAGCTCCGCTGAGAATATCG+TGG | + | chr1.3:3423997-3424016 | None:intergenic | 50.0% | |
| ATGTCGTGCCCTCCATTTGA+TGG | + | chr1.3:3423258-3423277 | None:intergenic | 50.0% | |
| CACTCTATGTGGAGGATGGA+TGG | - | chr1.3:3425063-3425082 | MS.gene043978:CDS | 50.0% | |
| CTAAGTTCCCAGGCTAAAGC+TGG | - | chr1.3:3425762-3425781 | MS.gene043978:CDS | 50.0% | |
| GTCACACTCTATGTGGAGGA+TGG | - | chr1.3:3425059-3425078 | MS.gene043978:CDS | 50.0% | |
| ! | GCCATCTAGTGGGCAAATAG+AGG | + | chr1.3:3425469-3425488 | None:intergenic | 50.0% |
| ! | GCGTCGCACCTCATTTTCTT+CGG | + | chr1.3:3423595-3423614 | None:intergenic | 50.0% |
| ! | GGATGGATGGCTTTTGTTCG+TGG | - | chr1.3:3425076-3425095 | MS.gene043978:CDS | 50.0% |
| !! | AATGGGTTAGACTGCCAGGT+TGG | - | chr1.3:3425184-3425203 | MS.gene043978:intron | 50.0% |
| CAATAGCCAACTCAGGCTCC+TGG | + | chr1.3:3423627-3423646 | None:intergenic | 55.0% | |
| CGTGTTCGCATTGCTGAGGT+TGG | - | chr1.3:3425157-3425176 | MS.gene043978:intron | 55.0% | |
| ! | CAAATGGAGGGCACGACATG+CGG | - | chr1.3:3423259-3423278 | MS.gene043978:CDS | 55.0% |
| ! | GAGCCTGAGTTGGCTATTGC+TGG | - | chr1.3:3423628-3423647 | MS.gene043978:intron | 55.0% |
| CGAGAACCAGGAGCCTGAGT+TGG | - | chr1.3:3423618-3423637 | MS.gene043978:intron | 60.0% | |
| ! | CTCAGGCTCCTGGTTCTCGA+TGG | + | chr1.3:3423617-3423636 | None:intergenic | 60.0% |
| GTGCGACGCCATCGAGAACC+AGG | - | chr1.3:3423606-3423625 | MS.gene043978:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3423229 | 3425899 | 3423229 | ID=MS.gene043978 |
| chr1.3 | mRNA | 3423229 | 3425899 | 3423229 | ID=MS.gene043978.t1;Parent=MS.gene043978 |
| chr1.3 | exon | 3425347 | 3425899 | 3425347 | ID=MS.gene043978.t1.exon1;Parent=MS.gene043978.t1 |
| chr1.3 | CDS | 3425347 | 3425899 | 3425347 | ID=cds.MS.gene043978.t1;Parent=MS.gene043978.t1 |
| chr1.3 | exon | 3424996 | 3425171 | 3424996 | ID=MS.gene043978.t1.exon2;Parent=MS.gene043978.t1 |
| chr1.3 | CDS | 3424996 | 3425171 | 3424996 | ID=cds.MS.gene043978.t1;Parent=MS.gene043978.t1 |
| chr1.3 | exon | 3423674 | 3424190 | 3423674 | ID=MS.gene043978.t1.exon3;Parent=MS.gene043978.t1 |
| chr1.3 | CDS | 3423674 | 3424190 | 3423674 | ID=cds.MS.gene043978.t1;Parent=MS.gene043978.t1 |
| chr1.3 | exon | 3423229 | 3423398 | 3423229 | ID=MS.gene043978.t1.exon4;Parent=MS.gene043978.t1 |
| chr1.3 | CDS | 3423229 | 3423398 | 3423229 | ID=cds.MS.gene043978.t1;Parent=MS.gene043978.t1 |
| Gene Sequence |
| Protein sequence |
