Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67077.t1 | XP_003589266.1 | 98.3 | 470 | 8 | 0 | 3 | 472 | 30 | 499 | 1.80E-266 | 927.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67077.t1 | Q8S2E6 | 28.5 | 333 | 194 | 10 | 21 | 323 | 62 | 380 | 6.2e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67077.t1 | G7I4K0 | 98.3 | 470 | 8 | 0 | 3 | 472 | 30 | 499 | 1.3e-266 | 927.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67077.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene67077 | 0.835767 | 1.39E-56 | -1.69E-46 |
| MS.gene049300 | MS.gene67077 | 0.806546 | 7.80E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene67077 | 0.819234 | 1.29E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene67077 | 0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene67077 | 0.801324 | 9.50E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene67077 | 0.817718 | 2.85E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene67077 | 0.833648 | 4.73E-56 | -1.69E-46 |
| MS.gene052311 | MS.gene67077 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene052609 | MS.gene67077 | 0.856329 | 3.46E-62 | -1.69E-46 |
| MS.gene053079 | MS.gene67077 | 0.834318 | 3.21E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene67077 | 0.824098 | 9.70E-54 | -1.69E-46 |
| MS.gene053541 | MS.gene67077 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene67077 | 0.810429 | 1.16E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene67077 | 0.827385 | 1.61E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene67077 | 0.830294 | 3.18E-55 | -1.69E-46 |
| MS.gene055537 | MS.gene67077 | 0.801704 | 7.94E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene67077 | 0.826445 | 2.70E-54 | -1.69E-46 |
| MS.gene055891 | MS.gene67077 | 0.819494 | 1.13E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene67077 | 0.81316 | 2.95E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene67077 | 0.837029 | 6.61E-57 | -1.69E-46 |
| MS.gene057082 | MS.gene67077 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene058649 | MS.gene67077 | 0.826743 | 2.29E-54 | -1.69E-46 |
| MS.gene058919 | MS.gene67077 | 0.828129 | 1.07E-54 | -1.69E-46 |
| MS.gene05894 | MS.gene67077 | 0.800833 | 1.20E-48 | -1.69E-46 |
| MS.gene059570 | MS.gene67077 | 0.841538 | 4.47E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67077 | MS.gene24344 | PPI |
| MS.gene67077 | MS.gene063298 | PPI |
| MS.gene67077 | MS.gene24350 | PPI |
| MS.gene24347 | MS.gene67077 | PPI |
| MS.gene67077 | MS.gene043978 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67077.t1 | MTR_1g021270 | 98.298 | 470 | 8 | 0 | 3 | 472 | 30 | 499 | 0.0 | 961 |
| MS.gene67077.t1 | MTR_1g021270 | 54.676 | 139 | 63 | 0 | 195 | 333 | 451 | 589 | 1.04e-43 | 162 |
| MS.gene67077.t1 | MTR_1g021320 | 76.289 | 291 | 64 | 1 | 182 | 472 | 460 | 745 | 7.42e-148 | 443 |
| MS.gene67077.t1 | MTR_1g021320 | 33.434 | 332 | 173 | 8 | 20 | 335 | 539 | 838 | 1.03e-41 | 159 |
| MS.gene67077.t1 | MTR_1g021320 | 47.143 | 70 | 36 | 1 | 20 | 88 | 214 | 283 | 1.24e-14 | 77.0 |
| MS.gene67077.t1 | MTR_1g021320 | 36.937 | 111 | 59 | 3 | 4 | 103 | 41 | 151 | 6.03e-14 | 74.7 |
| MS.gene67077.t1 | MTR_1g021440 | 43.137 | 357 | 170 | 8 | 4 | 334 | 38 | 387 | 8.47e-82 | 259 |
| MS.gene67077.t1 | MTR_1g021440 | 43.529 | 340 | 175 | 7 | 4 | 334 | 38 | 369 | 1.10e-80 | 255 |
| MS.gene67077.t1 | MTR_1g021360 | 44.479 | 326 | 127 | 9 | 4 | 326 | 198 | 472 | 8.23e-77 | 248 |
| MS.gene67077.t1 | MTR_1g021360 | 38.372 | 86 | 52 | 1 | 4 | 88 | 41 | 126 | 2.60e-12 | 68.9 |
| MS.gene67077.t1 | MTR_1g021330 | 44.512 | 328 | 154 | 8 | 20 | 334 | 58 | 370 | 6.06e-76 | 243 |
| MS.gene67077.t1 | MTR_1g021295 | 69.753 | 162 | 48 | 1 | 168 | 328 | 56 | 217 | 1.60e-71 | 226 |
| MS.gene67077.t1 | MTR_1g021435 | 36.782 | 348 | 182 | 9 | 4 | 333 | 38 | 365 | 5.08e-61 | 204 |
| MS.gene67077.t1 | MTR_1g021380 | 38.671 | 331 | 160 | 9 | 20 | 340 | 53 | 350 | 6.38e-59 | 197 |
| MS.gene67077.t1 | MTR_1g021400 | 37.072 | 321 | 174 | 5 | 20 | 333 | 62 | 361 | 5.52e-58 | 196 |
| MS.gene67077.t1 | MTR_1g021410 | 36.657 | 341 | 181 | 9 | 4 | 333 | 38 | 354 | 8.28e-56 | 190 |
| MS.gene67077.t1 | MTR_1g021350 | 66.667 | 87 | 27 | 1 | 250 | 334 | 247 | 333 | 2.51e-29 | 118 |
| MS.gene67077.t1 | MTR_1g021350 | 38.000 | 100 | 60 | 2 | 4 | 101 | 37 | 136 | 3.04e-13 | 71.2 |
| MS.gene67077.t1 | MTR_1g021440 | 33.459 | 266 | 144 | 8 | 4 | 243 | 38 | 296 | 1.23e-28 | 115 |
| MS.gene67077.t1 | MTR_6g036740 | 69.333 | 75 | 22 | 1 | 247 | 320 | 109 | 183 | 4.02e-28 | 114 |
| MS.gene67077.t1 | MTR_1g021440 | 33.333 | 249 | 149 | 7 | 4 | 243 | 38 | 278 | 8.92e-28 | 112 |
| MS.gene67077.t1 | MTR_7g050710 | 28.165 | 316 | 171 | 10 | 3 | 311 | 28 | 294 | 1.53e-24 | 104 |
| MS.gene67077.t1 | MTR_1g035460 | 25.868 | 317 | 200 | 6 | 4 | 320 | 2 | 283 | 4.46e-24 | 103 |
| MS.gene67077.t1 | MTR_7g050560 | 25.080 | 311 | 168 | 8 | 4 | 311 | 29 | 277 | 8.27e-19 | 87.4 |
| MS.gene67077.t1 | MTR_8g103940 | 23.053 | 321 | 181 | 11 | 3 | 312 | 54 | 319 | 1.03e-18 | 89.0 |
| MS.gene67077.t1 | MTR_7g050720 | 23.123 | 333 | 210 | 8 | 4 | 329 | 26 | 319 | 4.39e-16 | 79.3 |
| MS.gene67077.t1 | MTR_1g021290 | 37.815 | 119 | 62 | 4 | 20 | 130 | 187 | 301 | 2.39e-15 | 77.8 |
| MS.gene67077.t1 | MTR_4g068320 | 42.667 | 75 | 43 | 0 | 3 | 77 | 21 | 95 | 1.44e-14 | 75.9 |
| MS.gene67077.t1 | MTR_1g034240 | 26.718 | 131 | 96 | 0 | 3 | 133 | 22 | 152 | 9.07e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67077.t1 | AT3G18990 | 25.434 | 346 | 212 | 12 | 3 | 328 | 21 | 340 | 1.56e-21 | 96.3 |
| MS.gene67077.t1 | AT3G18990 | 25.444 | 338 | 206 | 12 | 3 | 320 | 21 | 332 | 3.63e-21 | 94.7 |
| MS.gene67077.t1 | AT4G33280 | 23.582 | 335 | 217 | 12 | 4 | 309 | 39 | 363 | 8.44e-13 | 70.5 |
| MS.gene67077.t1 | AT5G42700 | 30.556 | 144 | 89 | 3 | 189 | 327 | 42 | 179 | 3.09e-12 | 65.9 |
| MS.gene67077.t1 | AT5G42700 | 30.556 | 144 | 89 | 3 | 189 | 327 | 87 | 224 | 4.81e-12 | 66.2 |
Find 83 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGAGGTGATTTCTTCTT+TGG | 0.181730 | 1.2:-3480149 | MS.gene67077:CDS |
| CATTTCACCGTGCAAGTATT+TGG | 0.220691 | 1.2:-3480262 | MS.gene67077:CDS |
| GAGCTAACTTTAGGTTTCTT+TGG | 0.250603 | 1.2:+3478427 | None:intergenic |
| GCATATATCTGGAAGTATTA+TGG | 0.252813 | 1.2:+3478449 | None:intergenic |
| TGCGGATTAGTTTCATTAAC+TGG | 0.291460 | 1.2:-3480424 | MS.gene67077:CDS |
| AGGTTTCTTTGGCATATATC+TGG | 0.305794 | 1.2:+3478438 | None:intergenic |
| CTGCACTTTGAGCTAACTTT+AGG | 0.312808 | 1.2:+3478418 | None:intergenic |
| TGGTCTAACCAACTCATAAT+TGG | 0.316491 | 1.2:+3480039 | None:intergenic |
| ATAATCTTTGTCTTGCAGTT+TGG | 0.320704 | 1.2:+3478730 | None:intergenic |
| ACTAGCTGAACATTCTTTGC+AGG | 0.330880 | 1.2:+3479988 | None:intergenic |
| CTTCCTTCCCACTTCTATAC+AGG | 0.338352 | 1.2:+3479734 | None:intergenic |
| TGTGACATCGAAAATTGATA+TGG | 0.348004 | 1.2:+3478757 | None:intergenic |
| TTTACAATATGGCGACCTTT+TGG | 0.367843 | 1.2:-3480308 | MS.gene67077:CDS |
| GGAGATCATCATTTACAATA+TGG | 0.369169 | 1.2:-3480319 | MS.gene67077:CDS |
| ATTTCTTCTTTGGATGTTGT+TGG | 0.376542 | 1.2:-3480139 | MS.gene67077:CDS |
| TTCTCAAACCAGCTTTAGCC+TGG | 0.378926 | 1.2:+3477931 | None:intergenic |
| GTTTCTCTGATCATACTGAT+TGG | 0.381923 | 1.2:+3480019 | None:intergenic |
| TTGAATTCAATGGCTAAAAC+AGG | 0.382436 | 1.2:+3478346 | None:intergenic |
| GAGCCTGAGTTGGCTATTGC+TGG | 0.383202 | 1.2:-3480073 | MS.gene67077:CDS |
| ACCGGATTTCTTGAATTCAA+TGG | 0.386457 | 1.2:+3478336 | None:intergenic |
| GAAAAGAGGACGTAAATGAT+TGG | 0.410999 | 1.2:+3479644 | None:intergenic |
| GCCATTGAATTCAAGAAATC+CGG | 0.411437 | 1.2:-3478337 | MS.gene67077:CDS |
| TTAAACTTCAATAATATTGA+AGG | 0.413589 | 1.2:-3480184 | MS.gene67077:CDS |
| CTTGTATGCACTCTAGTTGT+TGG | 0.420097 | 1.2:+3478664 | None:intergenic |
| ATGTCGTGCCCTCCATTTGA+TGG | 0.432582 | 1.2:+3480446 | None:intergenic |
| GATTATTCTTTATAATTTGA+AGG | 0.433632 | 1.2:-3478713 | MS.gene67077:CDS |
| TTACTATTTCCTGTTTGAAA+AGG | 0.440868 | 1.2:+3479953 | None:intergenic |
| CGTGTTCGCATTGCTGAGGT+TGG | 0.454549 | 1.2:-3478544 | MS.gene67077:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.462248 | 1.2:+3479630 | None:intergenic |
| CGAAGTAGTTGAAGCTCTAC+CGG | 0.467583 | 1.2:+3478318 | None:intergenic |
| TCATGGATGGTCAACATTTG+TGG | 0.468855 | 1.2:-3480341 | MS.gene67077:CDS |
| CTGGTCCTAGTGGAAATACT+TGG | 0.471402 | 1.2:-3480405 | MS.gene67077:CDS |
| CACTCTATGTGGAGGATGGA+TGG | 0.472108 | 1.2:-3478638 | MS.gene67077:CDS |
| TTCAACTACTTCGAAGAAGA+TGG | 0.472680 | 1.2:-3478308 | MS.gene67077:CDS |
| CTAAGTTCCCAGGCTAAAGC+TGG | 0.489551 | 1.2:-3477939 | MS.gene67077:CDS |
| AAAAGAGGACGTAAATGATT+GGG | 0.490021 | 1.2:+3479645 | None:intergenic |
| ATTTGATGGACAAAACCATC+TGG | 0.494945 | 1.2:+3480460 | None:intergenic |
| ATACGAACCACTGACATTGA+AGG | 0.499194 | 1.2:+3479597 | None:intergenic |
| AATCATCTGTTCTTCCATCA+TGG | 0.499739 | 1.2:-3480358 | MS.gene67077:CDS |
| GCAAGTTCGATTAGTTGAGC+AGG | 0.500057 | 1.2:-3480383 | MS.gene67077:CDS |
| ATTATTCTTTATAATTTGAA+GGG | 0.502841 | 1.2:-3478712 | MS.gene67077:CDS |
| GTGCGACGCCATCGAGAACC+AGG | 0.511386 | 1.2:-3480095 | MS.gene67077:CDS |
| GGAAATAGTAATGAAGTTGA+AGG | 0.516580 | 1.2:-3479941 | MS.gene67077:intron |
| CATGGATGGTCAACATTTGT+GGG | 0.520091 | 1.2:-3480340 | MS.gene67077:CDS |
| TCTTCAACACGATGTTTCCT+CGG | 0.530379 | 1.2:+3477966 | None:intergenic |
| CAATAGCCAACTCAGGCTCC+TGG | 0.530813 | 1.2:+3480077 | None:intergenic |
| AAATCTATCCAATTATGAGT+TGG | 0.532358 | 1.2:-3480047 | MS.gene67077:CDS |
| TCAACTACTTCGAAGAAGAT+GGG | 0.533657 | 1.2:-3478307 | MS.gene67077:CDS |
| CGTGGCAATAGCATAAAAGT+TGG | 0.540845 | 1.2:-3478607 | MS.gene67077:CDS |
| CTCAGGCTCCTGGTTCTCGA+TGG | 0.547387 | 1.2:+3480087 | None:intergenic |
| CAAATGTTGACCATCCATGA+TGG | 0.553915 | 1.2:+3480344 | None:intergenic |
| CCTCGTATCTGAAAACCAAA+AGG | 0.559251 | 1.2:+3480293 | None:intergenic |
| TTCCTGTTTGAAAAGGAACA+TGG | 0.559808 | 1.2:+3479960 | None:intergenic |
| ATCTGTTCTTCCATCATGGA+TGG | 0.561421 | 1.2:-3480354 | MS.gene67077:CDS |
| TTACCAGCAATAGCCAACTC+AGG | 0.564889 | 1.2:+3480070 | None:intergenic |
| ATAATTTGAAGGGAGAACAC+TGG | 0.567172 | 1.2:-3478702 | MS.gene67077:CDS |
| AATGGGTTAGACTGCCAGGT+TGG | 0.568245 | 1.2:-3478517 | MS.gene67077:CDS |
| CAAATGGAGGGCACGACATG+CGG | 0.572358 | 1.2:-3480442 | MS.gene67077:CDS |
| CGAGAACCAGGAGCCTGAGT+TGG | 0.572650 | 1.2:-3480083 | MS.gene67077:CDS |
| GTTTCATTAACTGGTCCTAG+TGG | 0.577634 | 1.2:-3480415 | MS.gene67077:CDS |
| ATGAAGAAGTTCAATGTCAG+TGG | 0.577831 | 1.2:-3477837 | MS.gene67077:CDS |
| TGTCAGTGGTTCGTATACTC+TGG | 0.580584 | 1.2:-3479590 | MS.gene67077:intron |
| CATACAAGTCACACTCTATG+TGG | 0.582424 | 1.2:-3478649 | MS.gene67077:CDS |
| GCAGCAATCCTGTATAGAAG+TGG | 0.586525 | 1.2:-3479742 | MS.gene67077:CDS |
| GTCACACTCTATGTGGAGGA+TGG | 0.589858 | 1.2:-3478642 | MS.gene67077:CDS |
| TCTCAAACCAGCTTTAGCCT+GGG | 0.589973 | 1.2:+3477932 | None:intergenic |
| TGAAGATGAACTAAGTTCCC+AGG | 0.590157 | 1.2:-3477949 | MS.gene67077:CDS |
| GAGATGTTCCGAAGAAAATG+AGG | 0.590900 | 1.2:-3480117 | MS.gene67077:CDS |
| ATCAAAACCTTCAATGTCAG+TGG | 0.599816 | 1.2:-3479604 | MS.gene67077:CDS |
| TGTCAGTGGATCATACACTT+TGG | 0.614461 | 1.2:-3477823 | None:intergenic |
| CAGCAATCCTGTATAGAAGT+GGG | 0.617200 | 1.2:-3479741 | MS.gene67077:CDS |
| CAACTACTTCGAAGAAGATG+GGG | 0.619729 | 1.2:-3478306 | MS.gene67077:CDS |
| ACTTGCCAAGTATTTCCACT+AGG | 0.637449 | 1.2:+3480400 | None:intergenic |
| ATTACGTGTTCGCATTGCTG+AGG | 0.639477 | 1.2:-3478548 | MS.gene67077:CDS |
| AATCCTGTATAGAAGTGGGA+AGG | 0.661650 | 1.2:-3479737 | MS.gene67077:CDS |
| ATTCTCACCAAATACTTGCA+CGG | 0.664539 | 1.2:+3480255 | None:intergenic |
| TAGCTCAAAGTGCAGAACGA+AGG | 0.671058 | 1.2:-3478410 | MS.gene67077:CDS |
| ACAAGTCACACTCTATGTGG+AGG | 0.673956 | 1.2:-3478646 | MS.gene67077:CDS |
| TTAATGCAGAGAGTTCCAGA+TGG | 0.692519 | 1.2:-3480475 | MS.gene67077:CDS |
| AGGACAGAAAAGTGATGCTG+AGG | 0.705655 | 1.2:-3480164 | MS.gene67077:CDS |
| AAGCTCCGCTGAGAATATCG+TGG | 0.711691 | 1.2:+3479707 | None:intergenic |
| AAACAAAGACAGCTGTACCG+AGG | 0.720792 | 1.2:-3477983 | MS.gene67077:intron |
| GATGACCACGATATTCTCAG+CGG | 0.779588 | 1.2:-3479712 | MS.gene67077:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTCTTTATAATTTGAA+GGG | - | chr1.2:3479584-3479603 | MS.gene67077:intron | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1.2:3478677-3478696 | None:intergenic | 10.0% |
| !! | GATAAATTATAAATGACAAA+AGG | + | chr1.2:3478742-3478761 | None:intergenic | 15.0% |
| !! | GATTATTCTTTATAATTTGA+AGG | - | chr1.2:3479583-3479602 | MS.gene67077:intron | 15.0% |
| !! | TAAAATAAGTCAATCAAAAT+GGG | - | chr1.2:3479209-3479228 | MS.gene67077:intron | 15.0% |
| !! | TTAAACTTCAATAATATTGA+AGG | - | chr1.2:3478112-3478131 | MS.gene67077:intron | 15.0% |
| !!! | GTTTCTTATTTTAAGTTTAA+TGG | - | chr1.2:3479423-3479442 | MS.gene67077:intron | 15.0% |
| !!! | TATTTTTTTTACAATTGCAA+TGG | - | chr1.2:3480183-3480202 | MS.gene67077:CDS | 15.0% |
| !! | AAGATAAAACAGCATTATTT+GGG | + | chr1.2:3478766-3478785 | None:intergenic | 20.0% |
| !! | CTAAAATAAGTCAATCAAAA+TGG | - | chr1.2:3479208-3479227 | MS.gene67077:intron | 20.0% |
| !! | TTAAATAAAATGATAAGCTC+TGG | + | chr1.2:3478502-3478521 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1.2:3478669-3478688 | None:intergenic | 20.0% |
| !!! | ATTTTCACAAAATTAGGAAA+TGG | + | chr1.2:3480438-3480457 | None:intergenic | 20.0% |
| !!! | TTCATGATTTTCACAAAATT+AGG | + | chr1.2:3480444-3480463 | None:intergenic | 20.0% |
| ! | AAATCTATCCAATTATGAGT+TGG | - | chr1.2:3478249-3478268 | MS.gene67077:intron | 25.0% |
| ! | ATTTGTTTGCATAGCTATTT+AGG | + | chr1.2:3479065-3479084 | None:intergenic | 25.0% |
| ! | GAAGATAAAACAGCATTATT+TGG | + | chr1.2:3478767-3478786 | None:intergenic | 25.0% |
| ! | TAGTGAAAGAAAGAACAAAA+AGG | - | chr1.2:3480217-3480236 | MS.gene67077:CDS | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr1.2:3479160-3479179 | None:intergenic | 25.0% |
| ! | TTACTATTTCCTGTTTGAAA+AGG | + | chr1.2:3478346-3478365 | None:intergenic | 25.0% |
| !! | AATATAATTTGCCATCTAGT+GGG | + | chr1.2:3480074-3480093 | None:intergenic | 25.0% |
| AAAAGAGGACGTAAATGATT+GGG | + | chr1.2:3478654-3478673 | None:intergenic | 30.0% | |
| AAAAGCTTCCCATAAAAAGA+CGG | - | chr1.2:3480027-3480046 | MS.gene67077:CDS | 30.0% | |
| AAATGTCATAGCAGTAGAAA+AGG | + | chr1.2:3479249-3479268 | None:intergenic | 30.0% | |
| AGCAAATTCGATTTCATTCT+GGG | - | chr1.2:3478381-3478400 | MS.gene67077:CDS | 30.0% | |
| ATAAAGGGAGAAACACTATT+TGG | + | chr1.2:3478828-3478847 | None:intergenic | 30.0% | |
| ATAAGAAACATGTGAGTAGA+AGG | + | chr1.2:3479412-3479431 | None:intergenic | 30.0% | |
| ATAATCTTTGTCTTGCAGTT+TGG | + | chr1.2:3479569-3479588 | None:intergenic | 30.0% | |
| ATCTTCTTGAGAAACTGATA+TGG | - | chr1.2:3478781-3478800 | MS.gene67077:intron | 30.0% | |
| ATTTCTTCTTTGGATGTTGT+TGG | - | chr1.2:3478157-3478176 | MS.gene67077:intron | 30.0% | |
| GACTGAAGTCATAATTTGAA+AGG | + | chr1.2:3480280-3480299 | None:intergenic | 30.0% | |
| GGAAATAGTAATGAAGTTGA+AGG | - | chr1.2:3478355-3478374 | MS.gene67077:CDS | 30.0% | |
| GGAGATCATCATTTACAATA+TGG | - | chr1.2:3477977-3477996 | MS.gene67077:intron | 30.0% | |
| TAAAGGGAGAAACACTATTT+GGG | + | chr1.2:3478827-3478846 | None:intergenic | 30.0% | |
| TAGCAAATTCGATTTCATTC+TGG | - | chr1.2:3478380-3478399 | MS.gene67077:CDS | 30.0% | |
| TGAATCTAAAAGTTTGAGCA+AGG | + | chr1.2:3479365-3479384 | None:intergenic | 30.0% | |
| TGTGACATCGAAAATTGATA+TGG | + | chr1.2:3479542-3479561 | None:intergenic | 30.0% | |
| TTGAATTCAATGGCTAAAAC+AGG | + | chr1.2:3479953-3479972 | None:intergenic | 30.0% | |
| ! | AAGGTAGAAACTTTTACAGA+AGG | + | chr1.2:3480261-3480280 | None:intergenic | 30.0% |
| ! | AGACAAGTATCAGTTTTCTA+GGG | + | chr1.2:3478441-3478460 | None:intergenic | 30.0% |
| ! | CAATATAATTTGCCATCTAG+TGG | + | chr1.2:3480075-3480094 | None:intergenic | 30.0% |
| ! | TAAGCTCTGGCATAAATATA+AGG | + | chr1.2:3478489-3478508 | None:intergenic | 30.0% |
| ! | TAGACAAGTATCAGTTTTCT+AGG | + | chr1.2:3478442-3478461 | None:intergenic | 30.0% |
| !! | GCATATATCTGGAAGTATTA+TGG | + | chr1.2:3479850-3479869 | None:intergenic | 30.0% |
| AAAGCTTCCCATAAAAAGAC+GGG | - | chr1.2:3480028-3480047 | MS.gene67077:CDS | 35.0% | |
| AATCATCTGTTCTTCCATCA+TGG | - | chr1.2:3477938-3477957 | MS.gene67077:CDS | 35.0% | |
| ACCGGATTTCTTGAATTCAA+TGG | + | chr1.2:3479963-3479982 | None:intergenic | 35.0% | |
| ACTAGGACTTAGTATCAGTA+TGG | + | chr1.2:3478936-3478955 | None:intergenic | 35.0% | |
| AGAATAGTTCAAATCTACCC+AGG | + | chr1.2:3478970-3478989 | None:intergenic | 35.0% | |
| AGGTTTCTTTGGCATATATC+TGG | + | chr1.2:3479861-3479880 | None:intergenic | 35.0% | |
| AGTGTTTCTCCCTTTATGTA+TGG | - | chr1.2:3478831-3478850 | MS.gene67077:intron | 35.0% | |
| ATAATTTGAAGGGAGAACAC+TGG | - | chr1.2:3479594-3479613 | MS.gene67077:CDS | 35.0% | |
| ATCAAAACCTTCAATGTCAG+TGG | - | chr1.2:3478692-3478711 | MS.gene67077:CDS | 35.0% | |
| ATGAAGAAGTTCAATGTCAG+TGG | - | chr1.2:3480459-3480478 | MS.gene67077:CDS | 35.0% | |
| ATTCTCACCAAATACTTGCA+CGG | + | chr1.2:3478044-3478063 | None:intergenic | 35.0% | |
| ATTGCTGAGGTTGGAAAAAA+TGG | - | chr1.2:3479761-3479780 | MS.gene67077:intron | 35.0% | |
| CTTGAGAAACTGATATGGTT+GGG | - | chr1.2:3478786-3478805 | MS.gene67077:intron | 35.0% | |
| GAAAAGAGGACGTAAATGAT+TGG | + | chr1.2:3478655-3478674 | None:intergenic | 35.0% | |
| GACAAGAGTAGTAGTAGAAA+AGG | + | chr1.2:3479343-3479362 | None:intergenic | 35.0% | |
| GCCATTGAATTCAAGAAATC+CGG | - | chr1.2:3479959-3479978 | MS.gene67077:CDS | 35.0% | |
| GTTTCTCTGATCATACTGAT+TGG | + | chr1.2:3478280-3478299 | None:intergenic | 35.0% | |
| TACCATCCTCCATACATAAA+GGG | + | chr1.2:3478843-3478862 | None:intergenic | 35.0% | |
| TCAACTACTTCGAAGAAGAT+GGG | - | chr1.2:3479989-3480008 | MS.gene67077:CDS | 35.0% | |
| TCAGCAAGAGATTTGTGTTA+AGG | + | chr1.2:3479486-3479505 | None:intergenic | 35.0% | |
| TCTTGAGAAACTGATATGGT+TGG | - | chr1.2:3478785-3478804 | MS.gene67077:intron | 35.0% | |
| TGGTCTAACCAACTCATAAT+TGG | + | chr1.2:3478260-3478279 | None:intergenic | 35.0% | |
| TTACCATCCTCCATACATAA+AGG | + | chr1.2:3478844-3478863 | None:intergenic | 35.0% | |
| TTAGTATCAGTATGGATGGA+TGG | + | chr1.2:3478928-3478947 | None:intergenic | 35.0% | |
| TTCAACTACTTCGAAGAAGA+TGG | - | chr1.2:3479988-3480007 | MS.gene67077:CDS | 35.0% | |
| TTCCTGTTTGAAAAGGAACA+TGG | + | chr1.2:3478339-3478358 | None:intergenic | 35.0% | |
| TTGAGAAACTGATATGGTTG+GGG | - | chr1.2:3478787-3478806 | MS.gene67077:intron | 35.0% | |
| TTGCTGAGGTTGGAAAAAAT+GGG | - | chr1.2:3479762-3479781 | MS.gene67077:intron | 35.0% | |
| ! | AAACCTTACCCGTCTTTTTA+TGG | + | chr1.2:3480039-3480058 | None:intergenic | 35.0% |
| ! | AACCTTACCCGTCTTTTTAT+GGG | + | chr1.2:3480038-3480057 | None:intergenic | 35.0% |
| ! | ATTTGATGGACAAAACCATC+TGG | + | chr1.2:3477839-3477858 | None:intergenic | 35.0% |
| ! | GAGCTAACTTTAGGTTTCTT+TGG | + | chr1.2:3479872-3479891 | None:intergenic | 35.0% |
| ! | TTTACAATATGGCGACCTTT+TGG | - | chr1.2:3477988-3478007 | MS.gene67077:intron | 35.0% |
| !! | TGCGGATTAGTTTCATTAAC+TGG | - | chr1.2:3477872-3477891 | MS.gene67077:CDS | 35.0% |
| !! | TTTATGGGAAGCTTTTGACT+TGG | + | chr1.2:3480023-3480042 | None:intergenic | 35.0% |
| !!! | AGATGGTTTTGTCCATCAAA+TGG | - | chr1.2:3477838-3477857 | MS.gene67077:CDS | 35.0% |
| !!! | CTTTTGGTTTTCAGATACGA+GGG | - | chr1.2:3478004-3478023 | MS.gene67077:intron | 35.0% |
| !!! | TTATGGGAAGCTTTTGACTT+GGG | + | chr1.2:3480022-3480041 | None:intergenic | 35.0% |
| AATCCTGTATAGAAGTGGGA+AGG | - | chr1.2:3478559-3478578 | MS.gene67077:CDS | 40.0% | |
| ACTAGCTGAACATTCTTTGC+AGG | + | chr1.2:3478311-3478330 | None:intergenic | 40.0% | |
| ACTTGCCAAGTATTTCCACT+AGG | + | chr1.2:3477899-3477918 | None:intergenic | 40.0% | |
| AGTAGAAAAGGTCTCGAACT+TGG | + | chr1.2:3479237-3479256 | None:intergenic | 40.0% | |
| AGTGTGATGTAGAAGCTTCT+TGG | + | chr1.2:3479310-3479329 | None:intergenic | 40.0% | |
| ATACGAACCACTGACATTGA+AGG | + | chr1.2:3478702-3478721 | None:intergenic | 40.0% | |
| ATCTGTTCTTCCATCATGGA+TGG | - | chr1.2:3477942-3477961 | MS.gene67077:CDS | 40.0% | |
| CAAATGTTGACCATCCATGA+TGG | + | chr1.2:3477955-3477974 | None:intergenic | 40.0% | |
| CAACTACTTCGAAGAAGATG+GGG | - | chr1.2:3479990-3480009 | MS.gene67077:CDS | 40.0% | |
| CAGCAATCCTGTATAGAAGT+GGG | - | chr1.2:3478555-3478574 | MS.gene67077:CDS | 40.0% | |
| CATACAAGTCACACTCTATG+TGG | - | chr1.2:3479647-3479666 | MS.gene67077:CDS | 40.0% | |
| CATGGATGGTCAACATTTGT+GGG | - | chr1.2:3477956-3477975 | MS.gene67077:CDS | 40.0% | |
| CATTTCACCGTGCAAGTATT+TGG | - | chr1.2:3478034-3478053 | MS.gene67077:intron | 40.0% | |
| CCTAGTTAATGAGTCAACCT+GGG | - | chr1.2:3478950-3478969 | MS.gene67077:intron | 40.0% | |
| CCTCGTATCTGAAAACCAAA+AGG | + | chr1.2:3478006-3478025 | None:intergenic | 40.0% | |
| CGTGGCAATAGCATAAAAGT+TGG | - | chr1.2:3479689-3479708 | MS.gene67077:CDS | 40.0% | |
| CTGCACTTTGAGCTAACTTT+AGG | + | chr1.2:3479881-3479900 | None:intergenic | 40.0% | |
| CTTGTATGCACTCTAGTTGT+TGG | + | chr1.2:3479635-3479654 | None:intergenic | 40.0% | |
| GAGATGTTCCGAAGAAAATG+AGG | - | chr1.2:3478179-3478198 | MS.gene67077:intron | 40.0% | |
| GGACTTAGTATCAGTATGGA+TGG | + | chr1.2:3478932-3478951 | None:intergenic | 40.0% | |
| GTAGAAAAGGTCTCGAACTT+GGG | + | chr1.2:3479236-3479255 | None:intergenic | 40.0% | |
| GTTTCATTAACTGGTCCTAG+TGG | - | chr1.2:3477881-3477900 | MS.gene67077:CDS | 40.0% | |
| GTTTCTCCCTTTATGTATGG+AGG | - | chr1.2:3478834-3478853 | MS.gene67077:intron | 40.0% | |
| TACTTAGTGAAGATGCTGCT+TGG | - | chr1.2:3479029-3479048 | MS.gene67077:intron | 40.0% | |
| TAGAAAAGGTCTCGAACTTG+GGG | + | chr1.2:3479235-3479254 | None:intergenic | 40.0% | |
| TCATGGATGGTCAACATTTG+TGG | - | chr1.2:3477955-3477974 | MS.gene67077:CDS | 40.0% | |
| TCCTAGTTAATGAGTCAACC+TGG | - | chr1.2:3478949-3478968 | MS.gene67077:intron | 40.0% | |
| TCTTCAACACGATGTTTCCT+CGG | + | chr1.2:3480333-3480352 | None:intergenic | 40.0% | |
| TGAAGATGAACTAAGTTCCC+AGG | - | chr1.2:3480347-3480366 | MS.gene67077:CDS | 40.0% | |
| TGCTGAGGTGATTTCTTCTT+TGG | - | chr1.2:3478147-3478166 | MS.gene67077:intron | 40.0% | |
| TTCCCATAAAAAGACGGGTA+AGG | - | chr1.2:3480033-3480052 | MS.gene67077:CDS | 40.0% | |
| ! | GTCCATGTTCCTTTTCAAAC+AGG | - | chr1.2:3478334-3478353 | MS.gene67077:CDS | 40.0% |
| !! | AAAAAATGGGTTAGACTGCC+AGG | - | chr1.2:3479775-3479794 | MS.gene67077:intron | 40.0% |
| !! | GGTTTTGTCCATCAAATGGA+GGG | - | chr1.2:3477842-3477861 | MS.gene67077:CDS | 40.0% |
| !!! | CCTTTTGGTTTTCAGATACG+AGG | - | chr1.2:3478003-3478022 | MS.gene67077:intron | 40.0% |
| !!! | TACAAGCTAGTTTTCCAACC+TGG | + | chr1.2:3479796-3479815 | None:intergenic | 40.0% |
| !!! | TATGGGAAGCTTTTGACTTG+GGG | + | chr1.2:3480021-3480040 | None:intergenic | 40.0% |
| !!! | TGGTTTTGTCCATCAAATGG+AGG | - | chr1.2:3477841-3477860 | MS.gene67077:CDS | 40.0% |
| AAACAAAGACAGCTGTACCG+AGG | - | chr1.2:3480313-3480332 | MS.gene67077:CDS | 45.0% | |
| ACAAGTCACACTCTATGTGG+AGG | - | chr1.2:3479650-3479669 | MS.gene67077:CDS | 45.0% | |
| AGGACAGAAAAGTGATGCTG+AGG | - | chr1.2:3478132-3478151 | MS.gene67077:intron | 45.0% | |
| ATTACGTGTTCGCATTGCTG+AGG | - | chr1.2:3479748-3479767 | MS.gene67077:intron | 45.0% | |
| CCAACATGCATTGAAGTGCA+AGG | + | chr1.2:3478996-3479015 | None:intergenic | 45.0% | |
| CCTTGCACTTCAATGCATGT+TGG | - | chr1.2:3478993-3479012 | MS.gene67077:intron | 45.0% | |
| CGAAGTAGTTGAAGCTCTAC+CGG | + | chr1.2:3479981-3480000 | None:intergenic | 45.0% | |
| CTCCCTTTATGTATGGAGGA+TGG | - | chr1.2:3478838-3478857 | MS.gene67077:intron | 45.0% | |
| CTGGTCCTAGTGGAAATACT+TGG | - | chr1.2:3477891-3477910 | MS.gene67077:CDS | 45.0% | |
| CTTCCTTCCCACTTCTATAC+AGG | + | chr1.2:3478565-3478584 | None:intergenic | 45.0% | |
| GATGACCACGATATTCTCAG+CGG | - | chr1.2:3478584-3478603 | MS.gene67077:CDS | 45.0% | |
| GCAGCAATCCTGTATAGAAG+TGG | - | chr1.2:3478554-3478573 | MS.gene67077:CDS | 45.0% | |
| TAGCTCAAAGTGCAGAACGA+AGG | - | chr1.2:3479886-3479905 | MS.gene67077:intron | 45.0% | |
| TCCTCTATTTGCCCACTAGA+TGG | - | chr1.2:3480060-3480079 | MS.gene67077:CDS | 45.0% | |
| TGTCAGTGGTTCGTATACTC+TGG | - | chr1.2:3478706-3478725 | MS.gene67077:CDS | 45.0% | |
| TTACCAGCAATAGCCAACTC+AGG | + | chr1.2:3478229-3478248 | None:intergenic | 45.0% | |
| ! | CCCAGGTTGACTCATTAACT+AGG | + | chr1.2:3478953-3478972 | None:intergenic | 45.0% |
| ! | GCAAGTTCGATTAGTTGAGC+AGG | - | chr1.2:3477913-3477932 | MS.gene67077:CDS | 45.0% |
| ! | TCTCAAACCAGCTTTAGCCT+GGG | + | chr1.2:3480367-3480386 | None:intergenic | 45.0% |
| ! | TTCTCAAACCAGCTTTAGCC+TGG | + | chr1.2:3480368-3480387 | None:intergenic | 45.0% |
| !!! | ATGGGAAGCTTTTGACTTGG+GGG | + | chr1.2:3480020-3480039 | None:intergenic | 45.0% |
| AAGCTCCGCTGAGAATATCG+TGG | + | chr1.2:3478592-3478611 | None:intergenic | 50.0% | |
| ATGTCGTGCCCTCCATTTGA+TGG | + | chr1.2:3477853-3477872 | None:intergenic | 50.0% | |
| CACTCTATGTGGAGGATGGA+TGG | - | chr1.2:3479658-3479677 | MS.gene67077:CDS | 50.0% | |
| CTAAGTTCCCAGGCTAAAGC+TGG | - | chr1.2:3480357-3480376 | MS.gene67077:CDS | 50.0% | |
| GTCACACTCTATGTGGAGGA+TGG | - | chr1.2:3479654-3479673 | MS.gene67077:CDS | 50.0% | |
| ! | GCCATCTAGTGGGCAAATAG+AGG | + | chr1.2:3480064-3480083 | None:intergenic | 50.0% |
| ! | GCGTCGCACCTCATTTTCTT+CGG | + | chr1.2:3478190-3478209 | None:intergenic | 50.0% |
| ! | GGATGGATGGCTTTTGTTCG+TGG | - | chr1.2:3479671-3479690 | MS.gene67077:CDS | 50.0% |
| !! | AATGGGTTAGACTGCCAGGT+TGG | - | chr1.2:3479779-3479798 | MS.gene67077:intron | 50.0% |
| CAATAGCCAACTCAGGCTCC+TGG | + | chr1.2:3478222-3478241 | None:intergenic | 55.0% | |
| CGTGTTCGCATTGCTGAGGT+TGG | - | chr1.2:3479752-3479771 | MS.gene67077:intron | 55.0% | |
| ! | CAAATGGAGGGCACGACATG+CGG | - | chr1.2:3477854-3477873 | MS.gene67077:CDS | 55.0% |
| ! | GAGCCTGAGTTGGCTATTGC+TGG | - | chr1.2:3478223-3478242 | MS.gene67077:intron | 55.0% |
| CGAGAACCAGGAGCCTGAGT+TGG | - | chr1.2:3478213-3478232 | MS.gene67077:intron | 60.0% | |
| ! | CTCAGGCTCCTGGTTCTCGA+TGG | + | chr1.2:3478212-3478231 | None:intergenic | 60.0% |
| GTGCGACGCCATCGAGAACC+AGG | - | chr1.2:3478201-3478220 | MS.gene67077:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 3477824 | 3480494 | 3477824 | ID=MS.gene67077 |
| chr1.2 | mRNA | 3477824 | 3480494 | 3477824 | ID=MS.gene67077.t1;Parent=MS.gene67077 |
| chr1.2 | exon | 3479942 | 3480494 | 3479942 | ID=MS.gene67077.t1.exon1;Parent=MS.gene67077.t1 |
| chr1.2 | CDS | 3479942 | 3480494 | 3479942 | ID=cds.MS.gene67077.t1;Parent=MS.gene67077.t1 |
| chr1.2 | exon | 3479591 | 3479766 | 3479591 | ID=MS.gene67077.t1.exon2;Parent=MS.gene67077.t1 |
| chr1.2 | CDS | 3479591 | 3479766 | 3479591 | ID=cds.MS.gene67077.t1;Parent=MS.gene67077.t1 |
| chr1.2 | exon | 3478269 | 3478785 | 3478269 | ID=MS.gene67077.t1.exon3;Parent=MS.gene67077.t1 |
| chr1.2 | CDS | 3478269 | 3478785 | 3478269 | ID=cds.MS.gene67077.t1;Parent=MS.gene67077.t1 |
| chr1.2 | exon | 3477824 | 3477993 | 3477824 | ID=MS.gene67077.t1.exon4;Parent=MS.gene67077.t1 |
| chr1.2 | CDS | 3477824 | 3477993 | 3477824 | ID=cds.MS.gene67077.t1;Parent=MS.gene67077.t1 |
| Gene Sequence |
| Protein sequence |
