Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24350.t1 | XP_003589266.1 | 98.3 | 461 | 8 | 0 | 1 | 461 | 39 | 499 | 2.50E-260 | 907.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24350.t1 | Q8S2E6 | 28.5 | 333 | 194 | 10 | 10 | 312 | 62 | 380 | 6.0e-21 | 103.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24350.t1 | G7I4K0 | 98.3 | 461 | 8 | 0 | 1 | 461 | 39 | 499 | 1.8e-260 | 907.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24350.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24350 | 0.835808 | 1.35E-56 | -1.69E-46 |
| MS.gene049807 | MS.gene24350 | 0.803861 | 2.85E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene24350 | 0.836209 | 1.07E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene24350 | 0.829278 | 5.63E-55 | -1.69E-46 |
| MS.gene051102 | MS.gene24350 | 0.808617 | 2.84E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene24350 | 0.805939 | 1.05E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene24350 | 0.852563 | 4.25E-61 | -1.69E-46 |
| MS.gene052514 | MS.gene24350 | 0.801702 | 7.95E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene24350 | 0.806089 | 9.74E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene24350 | 0.872328 | 3.46E-67 | -1.69E-46 |
| MS.gene053079 | MS.gene24350 | 0.835279 | 1.84E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene24350 | 0.806196 | 9.25E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene24350 | 0.805418 | 1.35E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene24350 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene24350 | 0.825111 | 5.60E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene24350 | 0.804135 | 2.50E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene24350 | 0.811752 | 5.98E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene24350 | 0.815028 | 1.14E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene24350 | 0.808524 | 2.97E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene24350 | 0.821615 | 3.68E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene24350 | 0.828786 | 7.41E-55 | -1.69E-46 |
| MS.gene058649 | MS.gene24350 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene058919 | MS.gene24350 | 0.832953 | 7.04E-56 | -1.69E-46 |
| MS.gene059570 | MS.gene24350 | 0.811299 | 7.50E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene24350 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene24350 | 0.801352 | 9.38E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24347 | MS.gene24350 | PPI |
| MS.gene24350 | MS.gene063298 | PPI |
| MS.gene24350 | MS.gene043978 | PPI |
| MS.gene24344 | MS.gene24350 | PPI |
| MS.gene67077 | MS.gene24350 | PPI |
| MS.gene24350 | MS.gene24344 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24350.t1 | MTR_1g021270 | 98.265 | 461 | 8 | 0 | 1 | 461 | 39 | 499 | 0.0 | 940 |
| MS.gene24350.t1 | MTR_1g021270 | 54.676 | 139 | 63 | 0 | 184 | 322 | 451 | 589 | 7.07e-44 | 162 |
| MS.gene24350.t1 | MTR_1g021320 | 76.289 | 291 | 64 | 1 | 171 | 461 | 460 | 745 | 3.52e-148 | 443 |
| MS.gene24350.t1 | MTR_1g021320 | 33.434 | 332 | 173 | 8 | 9 | 324 | 539 | 838 | 8.43e-42 | 159 |
| MS.gene24350.t1 | MTR_1g021320 | 47.143 | 70 | 36 | 1 | 9 | 77 | 214 | 283 | 1.18e-14 | 77.0 |
| MS.gene24350.t1 | MTR_1g021320 | 40.206 | 97 | 47 | 3 | 7 | 92 | 55 | 151 | 3.48e-13 | 72.4 |
| MS.gene24350.t1 | MTR_1g021440 | 44.575 | 341 | 156 | 8 | 9 | 323 | 54 | 387 | 6.28e-82 | 259 |
| MS.gene24350.t1 | MTR_1g021440 | 45.062 | 324 | 161 | 7 | 9 | 323 | 54 | 369 | 1.11e-80 | 255 |
| MS.gene24350.t1 | MTR_1g021360 | 46.129 | 310 | 113 | 9 | 9 | 315 | 214 | 472 | 5.94e-77 | 248 |
| MS.gene24350.t1 | MTR_1g021360 | 44.286 | 70 | 38 | 1 | 9 | 77 | 57 | 126 | 9.99e-12 | 67.4 |
| MS.gene24350.t1 | MTR_1g021330 | 44.512 | 328 | 154 | 8 | 9 | 323 | 58 | 370 | 4.21e-76 | 243 |
| MS.gene24350.t1 | MTR_1g021295 | 69.753 | 162 | 48 | 1 | 157 | 317 | 56 | 217 | 9.57e-72 | 226 |
| MS.gene24350.t1 | MTR_1g021435 | 37.952 | 332 | 168 | 9 | 9 | 322 | 54 | 365 | 4.06e-61 | 204 |
| MS.gene24350.t1 | MTR_1g021380 | 38.671 | 331 | 160 | 9 | 9 | 329 | 53 | 350 | 5.54e-59 | 197 |
| MS.gene24350.t1 | MTR_1g021400 | 37.072 | 321 | 174 | 5 | 9 | 322 | 62 | 361 | 5.98e-58 | 195 |
| MS.gene24350.t1 | MTR_1g021410 | 37.846 | 325 | 167 | 9 | 9 | 322 | 54 | 354 | 1.25e-55 | 189 |
| MS.gene24350.t1 | MTR_1g021350 | 66.667 | 87 | 27 | 1 | 239 | 323 | 247 | 333 | 1.99e-29 | 118 |
| MS.gene24350.t1 | MTR_1g021350 | 42.857 | 84 | 46 | 2 | 9 | 90 | 53 | 136 | 3.57e-13 | 70.9 |
| MS.gene24350.t1 | MTR_1g021440 | 34.800 | 250 | 130 | 8 | 9 | 232 | 54 | 296 | 1.73e-28 | 114 |
| MS.gene24350.t1 | MTR_6g036740 | 69.333 | 75 | 22 | 1 | 236 | 309 | 109 | 183 | 3.44e-28 | 114 |
| MS.gene24350.t1 | MTR_1g021440 | 34.764 | 233 | 135 | 7 | 9 | 232 | 54 | 278 | 1.09e-27 | 112 |
| MS.gene24350.t1 | MTR_7g050710 | 28.428 | 299 | 158 | 10 | 9 | 300 | 45 | 294 | 6.42e-23 | 99.4 |
| MS.gene24350.t1 | MTR_1g035460 | 26.246 | 301 | 187 | 6 | 9 | 309 | 18 | 283 | 3.33e-22 | 98.6 |
| MS.gene24350.t1 | MTR_7g050560 | 25.424 | 295 | 155 | 8 | 9 | 300 | 45 | 277 | 8.28e-18 | 84.3 |
| MS.gene24350.t1 | MTR_1g021290 | 37.815 | 119 | 62 | 4 | 9 | 119 | 187 | 301 | 2.19e-15 | 77.8 |
| MS.gene24350.t1 | MTR_4g068320 | 43.750 | 64 | 36 | 0 | 3 | 66 | 32 | 95 | 2.17e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24350.t1 | AT3G18990 | 24.924 | 329 | 201 | 12 | 9 | 317 | 38 | 340 | 3.70e-18 | 86.3 |
| MS.gene24350.t1 | AT3G18990 | 24.922 | 321 | 195 | 12 | 9 | 309 | 38 | 332 | 1.16e-17 | 84.3 |
| MS.gene24350.t1 | AT4G33280 | 24.062 | 320 | 204 | 12 | 8 | 298 | 54 | 363 | 8.71e-13 | 70.1 |
| MS.gene24350.t1 | AT5G42700 | 30.556 | 144 | 89 | 3 | 178 | 316 | 42 | 179 | 2.99e-12 | 65.9 |
| MS.gene24350.t1 | AT5G42700 | 30.556 | 144 | 89 | 3 | 178 | 316 | 87 | 224 | 5.01e-12 | 65.9 |
Find 80 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGAGGTGATTTCTTCTT+TGG | 0.181730 | 1.1:-2953508 | MS.gene24350:CDS |
| CATTTCACCGTGCAAGTATT+TGG | 0.220691 | 1.1:-2953621 | MS.gene24350:CDS |
| GAGCTAACTTTAGGTTTCTT+TGG | 0.250603 | 1.1:+2951788 | None:intergenic |
| GCATATATCTGGAAGTATTA+TGG | 0.252813 | 1.1:+2951810 | None:intergenic |
| TGCGGATTAGTTTCATTAAC+TGG | 0.291460 | 1.1:-2953783 | MS.gene24350:CDS |
| AGGTTTCTTTGGCATATATC+TGG | 0.305794 | 1.1:+2951799 | None:intergenic |
| CTGCACTTTGAGCTAACTTT+AGG | 0.312808 | 1.1:+2951779 | None:intergenic |
| TGGTCTAACCAACTCATAAT+TGG | 0.316491 | 1.1:+2953398 | None:intergenic |
| ATAATCTTTGTCTTGCAGTT+TGG | 0.320704 | 1.1:+2952091 | None:intergenic |
| ACTAGCTGAACATTCTTTGC+AGG | 0.330880 | 1.1:+2953347 | None:intergenic |
| CTTCCTTCCCACTTCTATAC+AGG | 0.338352 | 1.1:+2953093 | None:intergenic |
| TGTGACATCGAAAATTGATA+TGG | 0.348004 | 1.1:+2952118 | None:intergenic |
| TTTACAATATGGCGACCTTT+TGG | 0.367843 | 1.1:-2953667 | MS.gene24350:CDS |
| GGAGATCATCATTTACAATA+TGG | 0.369169 | 1.1:-2953678 | MS.gene24350:CDS |
| ATTTCTTCTTTGGATGTTGT+TGG | 0.376542 | 1.1:-2953498 | MS.gene24350:CDS |
| TTCTCAAACCAGCTTTAGCC+TGG | 0.378926 | 1.1:+2951292 | None:intergenic |
| GTTTCTCTGATCATACTGAT+TGG | 0.381923 | 1.1:+2953378 | None:intergenic |
| TTGAATTCAATGGCTAAAAC+AGG | 0.382436 | 1.1:+2951707 | None:intergenic |
| GAGCCTGAGTTGGCTATTGC+TGG | 0.383202 | 1.1:-2953432 | MS.gene24350:CDS |
| ACCGGATTTCTTGAATTCAA+TGG | 0.386457 | 1.1:+2951697 | None:intergenic |
| GAAAAGAGGACGTAAATGAT+TGG | 0.410999 | 1.1:+2953003 | None:intergenic |
| GCCATTGAATTCAAGAAATC+CGG | 0.411437 | 1.1:-2951698 | MS.gene24350:CDS |
| TTAAACTTCAATAATATTGA+AGG | 0.413589 | 1.1:-2953543 | MS.gene24350:CDS |
| CTTGTATGCACTCTAGTTGT+TGG | 0.420097 | 1.1:+2952025 | None:intergenic |
| GATTATTCTTTATAATTTGA+AGG | 0.433632 | 1.1:-2952074 | MS.gene24350:CDS |
| TTACTATTTCCTGTTTGAAA+AGG | 0.440868 | 1.1:+2953312 | None:intergenic |
| CGTGTTCGCATTGCTGAGGT+TGG | 0.454549 | 1.1:-2951905 | MS.gene24350:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.462248 | 1.1:+2952989 | None:intergenic |
| CGAAGTAGTTGAAGCTCTAC+CGG | 0.467583 | 1.1:+2951679 | None:intergenic |
| TCATGGATGGTCAACATTTG+TGG | 0.468855 | 1.1:-2953700 | MS.gene24350:CDS |
| CTGGTCCTAGTGGAAATACT+TGG | 0.471402 | 1.1:-2953764 | MS.gene24350:CDS |
| CACTCTATGTGGAGGATGGA+TGG | 0.472108 | 1.1:-2951999 | MS.gene24350:CDS |
| TTCAACTACTTCGAAGAAGA+TGG | 0.472680 | 1.1:-2951669 | MS.gene24350:CDS |
| CTAAGTTCCCAGGCTAAAGC+TGG | 0.489551 | 1.1:-2951300 | MS.gene24350:CDS |
| AAAAGAGGACGTAAATGATT+GGG | 0.490021 | 1.1:+2953004 | None:intergenic |
| ATACGAACCACTGACATTGA+AGG | 0.499194 | 1.1:+2952956 | None:intergenic |
| AATCATCTGTTCTTCCATCA+TGG | 0.499739 | 1.1:-2953717 | MS.gene24350:CDS |
| GCAAGTTCGATTAGTTGAGC+AGG | 0.500057 | 1.1:-2953742 | MS.gene24350:CDS |
| ATTATTCTTTATAATTTGAA+GGG | 0.502841 | 1.1:-2952073 | MS.gene24350:CDS |
| GTGCGACGCCATCGAGAACC+AGG | 0.511386 | 1.1:-2953454 | MS.gene24350:CDS |
| GGAAATAGTAATGAAGTTGA+AGG | 0.516580 | 1.1:-2953300 | MS.gene24350:intron |
| CATGGATGGTCAACATTTGT+GGG | 0.520091 | 1.1:-2953699 | MS.gene24350:CDS |
| TCTTCAACACGATGTTTCCT+CGG | 0.530379 | 1.1:+2951327 | None:intergenic |
| CAATAGCCAACTCAGGCTCC+TGG | 0.530813 | 1.1:+2953436 | None:intergenic |
| AAATCTATCCAATTATGAGT+TGG | 0.532358 | 1.1:-2953406 | MS.gene24350:CDS |
| TCAACTACTTCGAAGAAGAT+GGG | 0.533657 | 1.1:-2951668 | MS.gene24350:CDS |
| CGTGGCAATAGCATAAAAGT+TGG | 0.540845 | 1.1:-2951968 | MS.gene24350:CDS |
| CTCAGGCTCCTGGTTCTCGA+TGG | 0.547387 | 1.1:+2953446 | None:intergenic |
| CAAATGTTGACCATCCATGA+TGG | 0.553915 | 1.1:+2953703 | None:intergenic |
| CCTCGTATCTGAAAACCAAA+AGG | 0.559251 | 1.1:+2953652 | None:intergenic |
| TTCCTGTTTGAAAAGGAACA+TGG | 0.559808 | 1.1:+2953319 | None:intergenic |
| ATCTGTTCTTCCATCATGGA+TGG | 0.561421 | 1.1:-2953713 | MS.gene24350:CDS |
| TTACCAGCAATAGCCAACTC+AGG | 0.564889 | 1.1:+2953429 | None:intergenic |
| ATAATTTGAAGGGAGAACAC+TGG | 0.567172 | 1.1:-2952063 | MS.gene24350:CDS |
| AATGGGTTAGACTGCCAGGT+TGG | 0.568245 | 1.1:-2951878 | MS.gene24350:CDS |
| CAAATGGAGGGCACGACATG+CGG | 0.572358 | 1.1:-2953801 | MS.gene24350:CDS |
| CGAGAACCAGGAGCCTGAGT+TGG | 0.572650 | 1.1:-2953442 | MS.gene24350:CDS |
| GTTTCATTAACTGGTCCTAG+TGG | 0.577634 | 1.1:-2953774 | MS.gene24350:CDS |
| ATGAAGAAGTTCAATGTCAG+TGG | 0.577831 | 1.1:-2951198 | MS.gene24350:CDS |
| TGTCAGTGGTTCGTATACTC+TGG | 0.580584 | 1.1:-2952949 | MS.gene24350:intron |
| CATACAAGTCACACTCTATG+TGG | 0.582424 | 1.1:-2952010 | MS.gene24350:CDS |
| GCAGCAATCCTGTATAGAAG+TGG | 0.586525 | 1.1:-2953101 | MS.gene24350:CDS |
| GTCACACTCTATGTGGAGGA+TGG | 0.589858 | 1.1:-2952003 | MS.gene24350:CDS |
| TCTCAAACCAGCTTTAGCCT+GGG | 0.589973 | 1.1:+2951293 | None:intergenic |
| TGAAGATGAACTAAGTTCCC+AGG | 0.590157 | 1.1:-2951310 | MS.gene24350:CDS |
| GAGATGTTCCGAAGAAAATG+AGG | 0.590900 | 1.1:-2953476 | MS.gene24350:CDS |
| ATCAAAACCTTCAATGTCAG+TGG | 0.599816 | 1.1:-2952963 | MS.gene24350:CDS |
| TGTCAGTGGATCATACACTT+TGG | 0.614461 | 1.1:-2951184 | None:intergenic |
| CAGCAATCCTGTATAGAAGT+GGG | 0.617200 | 1.1:-2953100 | MS.gene24350:CDS |
| CAACTACTTCGAAGAAGATG+GGG | 0.619729 | 1.1:-2951667 | MS.gene24350:CDS |
| ACTTGCCAAGTATTTCCACT+AGG | 0.637449 | 1.1:+2953759 | None:intergenic |
| ATTACGTGTTCGCATTGCTG+AGG | 0.639477 | 1.1:-2951909 | MS.gene24350:CDS |
| AATCCTGTATAGAAGTGGGA+AGG | 0.661650 | 1.1:-2953096 | MS.gene24350:CDS |
| ATTCTCACCAAATACTTGCA+CGG | 0.664539 | 1.1:+2953614 | None:intergenic |
| TAGCTCAAAGTGCAGAACGA+AGG | 0.671058 | 1.1:-2951771 | MS.gene24350:CDS |
| ACAAGTCACACTCTATGTGG+AGG | 0.673956 | 1.1:-2952007 | MS.gene24350:CDS |
| AGGACAGAAAAGTGATGCTG+AGG | 0.705655 | 1.1:-2953523 | MS.gene24350:CDS |
| AAGCTCCGCTGAGAATATCG+TGG | 0.711691 | 1.1:+2953066 | None:intergenic |
| AAACAAAGACAGCTGTACCG+AGG | 0.720792 | 1.1:-2951344 | MS.gene24350:intron |
| GATGACCACGATATTCTCAG+CGG | 0.779588 | 1.1:-2953071 | MS.gene24350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTCTTTATAATTTGAA+GGG | - | chr1.1:2952910-2952929 | MS.gene24350:intron | 10.0% |
| !!! | TTGATTATTTTAACAAAATA+TGG | + | chr1.1:2952005-2952024 | None:intergenic | 10.0% |
| !! | GATAAATTATAAATGACAAA+AGG | + | chr1.1:2952070-2952089 | None:intergenic | 15.0% |
| !! | GATTATTCTTTATAATTTGA+AGG | - | chr1.1:2952909-2952928 | MS.gene24350:intron | 15.0% |
| !! | TAAAATAAGTCAATCAAAAT+GGG | - | chr1.1:2952537-2952556 | MS.gene24350:intron | 15.0% |
| !! | TTAAACTTCAATAATATTGA+AGG | - | chr1.1:2951440-2951459 | MS.gene24350:intron | 15.0% |
| !!! | GTTTCTTATTTTATGTTTAA+TGG | - | chr1.1:2952749-2952768 | MS.gene24350:intron | 15.0% |
| !!! | TATTTTTTTTACAATTGCAA+TGG | - | chr1.1:2953509-2953528 | MS.gene24350:CDS | 15.0% |
| !! | AAGATAAAACAGCATTATTT+GGG | + | chr1.1:2952094-2952113 | None:intergenic | 20.0% |
| !! | CTAAAATAAGTCAATCAAAA+TGG | - | chr1.1:2952536-2952555 | MS.gene24350:intron | 20.0% |
| !! | TTAAATAAAATGATAAGCTC+TGG | + | chr1.1:2951830-2951849 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1.1:2951997-2952016 | None:intergenic | 20.0% |
| !!! | ATTTTCACAAAATTAGGAAA+TGG | + | chr1.1:2953764-2953783 | None:intergenic | 20.0% |
| !!! | TTCATGATTTTCACAAAATT+AGG | + | chr1.1:2953770-2953789 | None:intergenic | 20.0% |
| ! | AAATCTATCCAATTATGAGT+TGG | - | chr1.1:2951577-2951596 | MS.gene24350:intron | 25.0% |
| ! | ATTTGTTTGCATAGCTATTT+AGG | + | chr1.1:2952393-2952412 | None:intergenic | 25.0% |
| ! | GAAGATAAAACAGCATTATT+TGG | + | chr1.1:2952095-2952114 | None:intergenic | 25.0% |
| ! | TAGTGAAAGAAAGAACAAAA+AGG | - | chr1.1:2953543-2953562 | MS.gene24350:CDS | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr1.1:2952488-2952507 | None:intergenic | 25.0% |
| ! | TTACTATTTCCTGTTTGAAA+AGG | + | chr1.1:2951674-2951693 | None:intergenic | 25.0% |
| !! | AATATAATTTGCCATCTAGT+GGG | + | chr1.1:2953400-2953419 | None:intergenic | 25.0% |
| !! | TAAGCTCTGGTATAAATATA+AGG | + | chr1.1:2951817-2951836 | None:intergenic | 25.0% |
| AAAAGAGGACGTAAATGATT+GGG | + | chr1.1:2951982-2952001 | None:intergenic | 30.0% | |
| AAAAGCTTCCCATAAAAAGA+CGG | - | chr1.1:2953353-2953372 | MS.gene24350:CDS | 30.0% | |
| AAATGTCATAGCAGTAGAAA+AGG | + | chr1.1:2952577-2952596 | None:intergenic | 30.0% | |
| AGCAAATTCGATTTCATTCT+GGG | - | chr1.1:2951709-2951728 | MS.gene24350:CDS | 30.0% | |
| ATAAAGGGAGAAACACTATT+TGG | + | chr1.1:2952156-2952175 | None:intergenic | 30.0% | |
| ATAAGAAACATGTGAGTAGA+AGG | + | chr1.1:2952738-2952757 | None:intergenic | 30.0% | |
| ATAATCTTTGTCTTGCAGTT+TGG | + | chr1.1:2952895-2952914 | None:intergenic | 30.0% | |
| ATTTCTTCTTTGGATGTTGT+TGG | - | chr1.1:2951485-2951504 | MS.gene24350:intron | 30.0% | |
| GACTGAAGTCATAATTTGAA+AGG | + | chr1.1:2953606-2953625 | None:intergenic | 30.0% | |
| GGAAATAGTAATGAAGTTGA+AGG | - | chr1.1:2951683-2951702 | MS.gene24350:CDS | 30.0% | |
| GGAGATCATCATTTACAATA+TGG | - | chr1.1:2951305-2951324 | MS.gene24350:CDS | 30.0% | |
| TAAAGGGAGAAACACTATTT+GGG | + | chr1.1:2952155-2952174 | None:intergenic | 30.0% | |
| TAGCAAATTCGATTTCATTC+TGG | - | chr1.1:2951708-2951727 | MS.gene24350:CDS | 30.0% | |
| TGAATCTAAAAGTTTGAGCA+AGG | + | chr1.1:2952693-2952712 | None:intergenic | 30.0% | |
| TGTGACATCGAAAATTGATA+TGG | + | chr1.1:2952868-2952887 | None:intergenic | 30.0% | |
| TTGAATTCAATGGCTAAAAC+AGG | + | chr1.1:2953279-2953298 | None:intergenic | 30.0% | |
| ! | AAGGTAGAAACTTTTACAGA+AGG | + | chr1.1:2953587-2953606 | None:intergenic | 30.0% |
| ! | AGACAAGTATCAGTTTTCTA+GGG | + | chr1.1:2951769-2951788 | None:intergenic | 30.0% |
| ! | CAATATAATTTGCCATCTAG+TGG | + | chr1.1:2953401-2953420 | None:intergenic | 30.0% |
| ! | TAGACAAGTATCAGTTTTCT+AGG | + | chr1.1:2951770-2951789 | None:intergenic | 30.0% |
| !! | GCATATATCTGGAAGTATTA+TGG | + | chr1.1:2953176-2953195 | None:intergenic | 30.0% |
| AAAGCTTCCCATAAAAAGAC+GGG | - | chr1.1:2953354-2953373 | MS.gene24350:CDS | 35.0% | |
| AATCATCTGTTCTTCCATCA+TGG | - | chr1.1:2951266-2951285 | MS.gene24350:CDS | 35.0% | |
| ACCGGATTTCTTGAATTCAA+TGG | + | chr1.1:2953289-2953308 | None:intergenic | 35.0% | |
| ACTAGGACTTAGTATCAGTA+TGG | + | chr1.1:2952264-2952283 | None:intergenic | 35.0% | |
| AGAATAGTTCAAATCTACCC+AGG | + | chr1.1:2952298-2952317 | None:intergenic | 35.0% | |
| AGGTTTCTTTGGCATATATC+TGG | + | chr1.1:2953187-2953206 | None:intergenic | 35.0% | |
| AGTGTTTCTCCCTTTATGTA+TGG | - | chr1.1:2952159-2952178 | MS.gene24350:intron | 35.0% | |
| ATAATTTGAAGGGAGAACAC+TGG | - | chr1.1:2952920-2952939 | MS.gene24350:intron | 35.0% | |
| ATCAAAACCTTCAATGTCAG+TGG | - | chr1.1:2952020-2952039 | MS.gene24350:CDS | 35.0% | |
| ATCTTCTTGAGAAACTGATC+TGG | - | chr1.1:2952109-2952128 | MS.gene24350:CDS | 35.0% | |
| ATGAAGAAGTTCAATGTCAG+TGG | - | chr1.1:2953785-2953804 | MS.gene24350:CDS | 35.0% | |
| ATTCTCACCAAATACTTGCA+CGG | + | chr1.1:2951372-2951391 | None:intergenic | 35.0% | |
| ATTGCTGAGGTTGGAAAAAA+TGG | - | chr1.1:2953087-2953106 | MS.gene24350:CDS | 35.0% | |
| GAAAAGAGGACGTAAATGAT+TGG | + | chr1.1:2951983-2952002 | None:intergenic | 35.0% | |
| GACAAGAGTAGTAGTAGAAA+AGG | + | chr1.1:2952671-2952690 | None:intergenic | 35.0% | |
| GCCATTGAATTCAAGAAATC+CGG | - | chr1.1:2953285-2953304 | MS.gene24350:intron | 35.0% | |
| GTTTCTCTGATCATACTGAT+TGG | + | chr1.1:2951608-2951627 | None:intergenic | 35.0% | |
| TCAACTACTTCGAAGAAGAT+GGG | - | chr1.1:2953315-2953334 | MS.gene24350:CDS | 35.0% | |
| TCAGCAAGAGATTTGTGTTA+AGG | + | chr1.1:2952812-2952831 | None:intergenic | 35.0% | |
| TGGTCTAACCAACTCATAAT+TGG | + | chr1.1:2951588-2951607 | None:intergenic | 35.0% | |
| TTAGTATCAGTATGGATGGA+TGG | + | chr1.1:2952256-2952275 | None:intergenic | 35.0% | |
| TTCAACTACTTCGAAGAAGA+TGG | - | chr1.1:2953314-2953333 | MS.gene24350:CDS | 35.0% | |
| TTCCTGTTTGAAAAGGAACA+TGG | + | chr1.1:2951667-2951686 | None:intergenic | 35.0% | |
| TTGCTGAGGTTGGAAAAAAT+GGG | - | chr1.1:2953088-2953107 | MS.gene24350:CDS | 35.0% | |
| ! | AAACCTTACCCGTCTTTTTA+TGG | + | chr1.1:2953365-2953384 | None:intergenic | 35.0% |
| ! | AACCTTACCCGTCTTTTTAT+GGG | + | chr1.1:2953364-2953383 | None:intergenic | 35.0% |
| ! | GAGCTAACTTTAGGTTTCTT+TGG | + | chr1.1:2953198-2953217 | None:intergenic | 35.0% |
| ! | TTTACAATATGGCGACCTTT+TGG | - | chr1.1:2951316-2951335 | MS.gene24350:CDS | 35.0% |
| !! | TGCGGATTAGTTTCATTAAC+TGG | - | chr1.1:2951200-2951219 | MS.gene24350:CDS | 35.0% |
| !! | TTTATGGGAAGCTTTTGACT+TGG | + | chr1.1:2953349-2953368 | None:intergenic | 35.0% |
| !!! | CTTTTGGTTTTCAGATACGA+GGG | - | chr1.1:2951332-2951351 | MS.gene24350:CDS | 35.0% |
| !!! | TTATGGGAAGCTTTTGACTT+GGG | + | chr1.1:2953348-2953367 | None:intergenic | 35.0% |
| AATCCTGTATAGAAGTGGGA+AGG | - | chr1.1:2951887-2951906 | MS.gene24350:CDS | 40.0% | |
| ACTAGCTGAACATTCTTTGC+AGG | + | chr1.1:2951639-2951658 | None:intergenic | 40.0% | |
| ACTTGCCAAGTATTTCCACT+AGG | + | chr1.1:2951227-2951246 | None:intergenic | 40.0% | |
| AGTAGAAAAGGTCTCGAACT+TGG | + | chr1.1:2952565-2952584 | None:intergenic | 40.0% | |
| AGTGTGATGTAGAAGCTTCT+TGG | + | chr1.1:2952638-2952657 | None:intergenic | 40.0% | |
| ATACGAACCACTGACATTGA+AGG | + | chr1.1:2952030-2952049 | None:intergenic | 40.0% | |
| ATCTGTTCTTCCATCATGGA+TGG | - | chr1.1:2951270-2951289 | MS.gene24350:CDS | 40.0% | |
| CAAATGTTGACCATCCATGA+TGG | + | chr1.1:2951283-2951302 | None:intergenic | 40.0% | |
| CAACTACTTCGAAGAAGATG+GGG | - | chr1.1:2953316-2953335 | MS.gene24350:CDS | 40.0% | |
| CAGCAATCCTGTATAGAAGT+GGG | - | chr1.1:2951883-2951902 | MS.gene24350:CDS | 40.0% | |
| CATACAAGTCACACTCTATG+TGG | - | chr1.1:2952973-2952992 | MS.gene24350:CDS | 40.0% | |
| CATGGATGGTCAACATTTGT+GGG | - | chr1.1:2951284-2951303 | MS.gene24350:CDS | 40.0% | |
| CATTTCACCGTGCAAGTATT+TGG | - | chr1.1:2951362-2951381 | MS.gene24350:intron | 40.0% | |
| CCTAGTTAATGAGTCAACCT+GGG | - | chr1.1:2952278-2952297 | MS.gene24350:intron | 40.0% | |
| CCTCGTATCTGAAAACCAAA+AGG | + | chr1.1:2951334-2951353 | None:intergenic | 40.0% | |
| CGTGGCAATAGCATAAAAGT+TGG | - | chr1.1:2953015-2953034 | MS.gene24350:CDS | 40.0% | |
| CTGCACTTTGAGCTAACTTT+AGG | + | chr1.1:2953207-2953226 | None:intergenic | 40.0% | |
| CTTGAGAAACTGATCTGGTT+GGG | - | chr1.1:2952114-2952133 | MS.gene24350:CDS | 40.0% | |
| CTTGTATGCACTCTAGTTGT+TGG | + | chr1.1:2952961-2952980 | None:intergenic | 40.0% | |
| GAGATGTTCCGAAGAAAATG+AGG | - | chr1.1:2951507-2951526 | MS.gene24350:intron | 40.0% | |
| GGACTTAGTATCAGTATGGA+TGG | + | chr1.1:2952260-2952279 | None:intergenic | 40.0% | |
| GTAGAAAAGGTCTCGAACTT+GGG | + | chr1.1:2952564-2952583 | None:intergenic | 40.0% | |
| GTTTCATTAACTGGTCCTAG+TGG | - | chr1.1:2951209-2951228 | MS.gene24350:CDS | 40.0% | |
| GTTTCTCCCTTTATGTATGG+AGG | - | chr1.1:2952162-2952181 | MS.gene24350:intron | 40.0% | |
| TACTTAGTGAAGATGCTGCT+TGG | - | chr1.1:2952357-2952376 | MS.gene24350:intron | 40.0% | |
| TAGAAAAGGTCTCGAACTTG+GGG | + | chr1.1:2952563-2952582 | None:intergenic | 40.0% | |
| TCATGGATGGTCAACATTTG+TGG | - | chr1.1:2951283-2951302 | MS.gene24350:CDS | 40.0% | |
| TCCTAGTTAATGAGTCAACC+TGG | - | chr1.1:2952277-2952296 | MS.gene24350:intron | 40.0% | |
| TCTTCAACACGATGTTTCCT+CGG | + | chr1.1:2953659-2953678 | None:intergenic | 40.0% | |
| TCTTGAGAAACTGATCTGGT+TGG | - | chr1.1:2952113-2952132 | MS.gene24350:CDS | 40.0% | |
| TGAAGATGAACTAAGTTCCC+AGG | - | chr1.1:2953673-2953692 | MS.gene24350:CDS | 40.0% | |
| TGCCATCCTCCATACATAAA+GGG | + | chr1.1:2952171-2952190 | None:intergenic | 40.0% | |
| TGCTGAGGTGATTTCTTCTT+TGG | - | chr1.1:2951475-2951494 | MS.gene24350:intron | 40.0% | |
| TTCCCATAAAAAGACGGGTA+AGG | - | chr1.1:2953359-2953378 | MS.gene24350:CDS | 40.0% | |
| TTGAGAAACTGATCTGGTTG+GGG | - | chr1.1:2952115-2952134 | MS.gene24350:CDS | 40.0% | |
| TTGCCATCCTCCATACATAA+AGG | + | chr1.1:2952172-2952191 | None:intergenic | 40.0% | |
| ! | GTCCATGTTCCTTTTCAAAC+AGG | - | chr1.1:2951662-2951681 | MS.gene24350:CDS | 40.0% |
| !! | AAAAAATGGGTTAGACTGCC+AGG | - | chr1.1:2953101-2953120 | MS.gene24350:CDS | 40.0% |
| !!! | CCTTTTGGTTTTCAGATACG+AGG | - | chr1.1:2951331-2951350 | MS.gene24350:CDS | 40.0% |
| !!! | TACAAGCTAGTTTTCCAACC+TGG | + | chr1.1:2953122-2953141 | None:intergenic | 40.0% |
| !!! | TATGGGAAGCTTTTGACTTG+GGG | + | chr1.1:2953347-2953366 | None:intergenic | 40.0% |
| AAACAAAGACAGCTGTACCG+AGG | - | chr1.1:2953639-2953658 | MS.gene24350:CDS | 45.0% | |
| ACAAGTCACACTCTATGTGG+AGG | - | chr1.1:2952976-2952995 | MS.gene24350:CDS | 45.0% | |
| AGGACAGAAAAGTGATGCTG+AGG | - | chr1.1:2951460-2951479 | MS.gene24350:intron | 45.0% | |
| ATTACGTGTTCGCATTGCTG+AGG | - | chr1.1:2953074-2953093 | MS.gene24350:CDS | 45.0% | |
| CCAACATGCATTGAAGTGCA+AGG | + | chr1.1:2952324-2952343 | None:intergenic | 45.0% | |
| CCTTGCACTTCAATGCATGT+TGG | - | chr1.1:2952321-2952340 | MS.gene24350:intron | 45.0% | |
| CGAAGTAGTTGAAGCTCTAC+CGG | + | chr1.1:2953307-2953326 | None:intergenic | 45.0% | |
| CTCCCTTTATGTATGGAGGA+TGG | - | chr1.1:2952166-2952185 | MS.gene24350:intron | 45.0% | |
| CTGGTCCTAGTGGAAATACT+TGG | - | chr1.1:2951219-2951238 | MS.gene24350:CDS | 45.0% | |
| CTTCCTTCCCACTTCTATAC+AGG | + | chr1.1:2951893-2951912 | None:intergenic | 45.0% | |
| GATGACCACGATATTCTCAG+CGG | - | chr1.1:2951912-2951931 | MS.gene24350:CDS | 45.0% | |
| GCAGCAATCCTGTATAGAAG+TGG | - | chr1.1:2951882-2951901 | MS.gene24350:CDS | 45.0% | |
| TAGCTCAAAGTGCAGAACGA+AGG | - | chr1.1:2953212-2953231 | MS.gene24350:intron | 45.0% | |
| TCCTCTATTTGCCCACTAGA+TGG | - | chr1.1:2953386-2953405 | MS.gene24350:CDS | 45.0% | |
| TGTCAGTGGTTCGTATACTC+TGG | - | chr1.1:2952034-2952053 | MS.gene24350:CDS | 45.0% | |
| TTACCAGCAATAGCCAACTC+AGG | + | chr1.1:2951557-2951576 | None:intergenic | 45.0% | |
| ! | CCCAGGTTGACTCATTAACT+AGG | + | chr1.1:2952281-2952300 | None:intergenic | 45.0% |
| ! | GCAAGTTCGATTAGTTGAGC+AGG | - | chr1.1:2951241-2951260 | MS.gene24350:CDS | 45.0% |
| ! | TCTCAAACCAGCTTTAGCCT+GGG | + | chr1.1:2953693-2953712 | None:intergenic | 45.0% |
| ! | TTCTCAAACCAGCTTTAGCC+TGG | + | chr1.1:2953694-2953713 | None:intergenic | 45.0% |
| !!! | ATGGGAAGCTTTTGACTTGG+GGG | + | chr1.1:2953346-2953365 | None:intergenic | 45.0% |
| AAGCTCCGCTGAGAATATCG+TGG | + | chr1.1:2951920-2951939 | None:intergenic | 50.0% | |
| CACTCTATGTGGAGGATGGA+TGG | - | chr1.1:2952984-2953003 | MS.gene24350:CDS | 50.0% | |
| CTAAGTTCCCAGGCTAAAGC+TGG | - | chr1.1:2953683-2953702 | MS.gene24350:CDS | 50.0% | |
| GTCACACTCTATGTGGAGGA+TGG | - | chr1.1:2952980-2952999 | MS.gene24350:CDS | 50.0% | |
| ! | GCCATCTAGTGGGCAAATAG+AGG | + | chr1.1:2953390-2953409 | None:intergenic | 50.0% |
| ! | GCGTCGCACCTCATTTTCTT+CGG | + | chr1.1:2951518-2951537 | None:intergenic | 50.0% |
| ! | GGATGGATGGCTTTTGTTCG+TGG | - | chr1.1:2952997-2953016 | MS.gene24350:CDS | 50.0% |
| !! | AATGGGTTAGACTGCCAGGT+TGG | - | chr1.1:2953105-2953124 | MS.gene24350:CDS | 50.0% |
| CAATAGCCAACTCAGGCTCC+TGG | + | chr1.1:2951550-2951569 | None:intergenic | 55.0% | |
| CGTGTTCGCATTGCTGAGGT+TGG | - | chr1.1:2953078-2953097 | MS.gene24350:CDS | 55.0% | |
| ! | GAGCCTGAGTTGGCTATTGC+TGG | - | chr1.1:2951551-2951570 | MS.gene24350:intron | 55.0% |
| CGAGAACCAGGAGCCTGAGT+TGG | - | chr1.1:2951541-2951560 | MS.gene24350:intron | 60.0% | |
| ! | CTCAGGCTCCTGGTTCTCGA+TGG | + | chr1.1:2951540-2951559 | None:intergenic | 60.0% |
| GTGCGACGCCATCGAGAACC+AGG | - | chr1.1:2951529-2951548 | MS.gene24350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2951185 | 2953820 | 2951185 | ID=MS.gene24350 |
| chr1.1 | mRNA | 2951185 | 2953820 | 2951185 | ID=MS.gene24350.t1;Parent=MS.gene24350 |
| chr1.1 | exon | 2953301 | 2953820 | 2953301 | ID=MS.gene24350.t1.exon1;Parent=MS.gene24350.t1 |
| chr1.1 | CDS | 2953301 | 2953820 | 2953301 | ID=cds.MS.gene24350.t1;Parent=MS.gene24350.t1 |
| chr1.1 | exon | 2952950 | 2953125 | 2952950 | ID=MS.gene24350.t1.exon2;Parent=MS.gene24350.t1 |
| chr1.1 | CDS | 2952950 | 2953125 | 2952950 | ID=cds.MS.gene24350.t1;Parent=MS.gene24350.t1 |
| chr1.1 | exon | 2951630 | 2952146 | 2951630 | ID=MS.gene24350.t1.exon3;Parent=MS.gene24350.t1 |
| chr1.1 | CDS | 2951630 | 2952146 | 2951630 | ID=cds.MS.gene24350.t1;Parent=MS.gene24350.t1 |
| chr1.1 | exon | 2951185 | 2951354 | 2951185 | ID=MS.gene24350.t1.exon4;Parent=MS.gene24350.t1 |
| chr1.1 | CDS | 2951185 | 2951354 | 2951185 | ID=cds.MS.gene24350.t1;Parent=MS.gene24350.t1 |
| Gene Sequence |
| Protein sequence |
