Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045420.t1 | XP_003607656.2 | 88.4 | 805 | 35 | 4 | 1 | 798 | 1 | 754 | 0.00E+00 | 1401 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045420.t1 | B5WWZ8 | 73.6 | 799 | 149 | 6 | 1 | 792 | 1 | 744 | 0.0e+00 | 1169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045420.t1 | G7JDV8 | 88.4 | 805 | 35 | 4 | 1 | 798 | 1 | 754 | 0.0e+00 | 1401.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056569 | MS.gene045420 | PPI |
| MS.gene067993 | MS.gene045420 | PPI |
| MS.gene82943 | MS.gene045420 | PPI |
| MS.gene82942 | MS.gene045420 | PPI |
| MS.gene045420 | MS.gene82452 | PPI |
| MS.gene72746 | MS.gene045420 | PPI |
| MS.gene72745 | MS.gene045420 | PPI |
| MS.gene86456 | MS.gene045420 | PPI |
| MS.gene83396 | MS.gene045420 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045420.t1 | MTR_4g080890 | 88.447 | 805 | 35 | 4 | 1 | 798 | 1 | 754 | 0.0 | 1385 |
| MS.gene045420.t1 | MTR_4g080823 | 84.826 | 804 | 64 | 4 | 1 | 797 | 10 | 762 | 0.0 | 1339 |
| MS.gene045420.t1 | MTR_0651s0010 | 86.364 | 704 | 38 | 4 | 1 | 697 | 1 | 653 | 0.0 | 1172 |
| MS.gene045420.t1 | MTR_7g097210 | 52.652 | 792 | 312 | 10 | 4 | 792 | 3 | 734 | 0.0 | 805 |
| MS.gene045420.t1 | MTR_1g075650 | 61.684 | 582 | 173 | 8 | 212 | 792 | 3 | 535 | 0.0 | 714 |
| MS.gene045420.t1 | MTR_7g097210 | 59.408 | 574 | 221 | 7 | 220 | 792 | 2 | 564 | 0.0 | 668 |
| MS.gene045420.t1 | MTR_5g025650 | 41.056 | 833 | 376 | 17 | 12 | 796 | 64 | 829 | 0.0 | 564 |
| MS.gene045420.t1 | MTR_8g072210 | 40.073 | 826 | 375 | 16 | 19 | 796 | 57 | 810 | 0.0 | 539 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045420.t1 | AT3G23410 | 55.089 | 786 | 284 | 6 | 22 | 795 | 15 | 743 | 0.0 | 839 |
| MS.gene045420.t1 | AT3G23410 | 61.004 | 677 | 255 | 3 | 122 | 795 | 5 | 675 | 0.0 | 832 |
| MS.gene045420.t1 | AT4G28570 | 56.941 | 706 | 289 | 5 | 96 | 792 | 43 | 742 | 0.0 | 791 |
| MS.gene045420.t1 | AT4G28570 | 56.941 | 706 | 289 | 5 | 96 | 792 | 43 | 742 | 0.0 | 791 |
| MS.gene045420.t1 | AT1G03990 | 47.553 | 797 | 360 | 12 | 7 | 797 | 13 | 757 | 0.0 | 718 |
| MS.gene045420.t1 | AT4G19380 | 44.051 | 706 | 353 | 14 | 115 | 796 | 39 | 726 | 7.36e-179 | 531 |
| MS.gene045420.t1 | AT4G19380 | 44.051 | 706 | 353 | 14 | 115 | 796 | 81 | 768 | 1.72e-178 | 531 |
Find 167 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCTTGTTTCTCTCCTTT+TGG | 0.180580 | 4.2:+28767874 | None:intergenic |
| GAAGAAATGTTTGGGAGTTT+TGG | 0.193859 | 4.2:-28767740 | MS.gene045420:CDS |
| TGATTCAAGAATACTTATTT+TGG | 0.221568 | 4.2:-28768193 | MS.gene045420:CDS |
| CTCGTCAGGGATTGGATATT+TGG | 0.232443 | 4.2:+28770059 | None:intergenic |
| CTGTTCCTTGCATTCCATTC+AGG | 0.241621 | 4.2:+28769937 | None:intergenic |
| CAACTTCTCAAGCTTGTCTT+TGG | 0.272508 | 4.2:-28768833 | MS.gene045420:CDS |
| TGATTCCCTGGTGAATTTCT+TGG | 0.279412 | 4.2:+28767925 | None:intergenic |
| GCTTGAGAAGTTGCTGATAA+AGG | 0.301467 | 4.2:+28768843 | None:intergenic |
| ATGGACCAACAATATGAAAA+TGG | 0.302883 | 4.2:-28768234 | MS.gene045420:CDS |
| TATTGTGGTTCATGTGGTTA+TGG | 0.314221 | 4.2:-28767901 | MS.gene045420:CDS |
| TAAACGAATGCAATTCTAAA+AGG | 0.317923 | 4.2:+28768760 | None:intergenic |
| TTCCATTCAGGAACTTCTTT+CGG | 0.328422 | 4.2:+28769949 | None:intergenic |
| GTTGATTGAATAGTAATCAT+AGG | 0.337491 | 4.2:+28766484 | None:intergenic |
| CAACAGAAAGAAGAAATGTT+TGG | 0.349734 | 4.2:-28767749 | MS.gene045420:CDS |
| CATTGTTACCAGGTGAGAAT+TGG | 0.351996 | 4.2:-28766657 | MS.gene045420:CDS |
| GTTATGAAGTGTGCTGTTCT+TGG | 0.357460 | 4.2:+28766922 | None:intergenic |
| GCACTATATCCATGGGAATC+AGG | 0.366958 | 4.2:-28766976 | MS.gene045420:CDS |
| TTCTAGTGATGAATAATCTT+CGG | 0.371885 | 4.2:+28768266 | None:intergenic |
| AGAAAAGGGTGTCAAAATCT+TGG | 0.379576 | 4.2:-28767967 | MS.gene045420:CDS |
| TTGGGCACTTTCTTGATTTG+TGG | 0.380021 | 4.2:-28768892 | MS.gene045420:CDS |
| CGAGGGAGAGGGAGAGGGAG+AGG | 0.386680 | 4.2:+28769978 | None:intergenic |
| GTATACTTCTGCTCATCAAA+TGG | 0.389845 | 4.2:-28766629 | MS.gene045420:CDS |
| TATACTTCTGCTCATCAAAT+GGG | 0.393187 | 4.2:-28766628 | MS.gene045420:CDS |
| TATCCAATGGCTTTCCATGC+TGG | 0.395200 | 4.2:+28768567 | None:intergenic |
| AACAGAAAGAAGAAATGTTT+GGG | 0.405430 | 4.2:-28767748 | MS.gene045420:CDS |
| CAAAATCAAGTATTAAGAAA+AGG | 0.411212 | 4.2:-28767982 | MS.gene045420:CDS |
| TTTGAAAATAGCTACAAGAA+TGG | 0.416910 | 4.2:-28767775 | MS.gene045420:CDS |
| TCTAGTGATGAATAATCTTC+GGG | 0.422485 | 4.2:+28768267 | None:intergenic |
| TGTGGTTATGGTTGTCCAAA+AGG | 0.434505 | 4.2:-28767889 | MS.gene045420:CDS |
| CTTGAGAAGTTGCTGATAAA+GGG | 0.437565 | 4.2:+28768844 | None:intergenic |
| TTCAATTATTGCTCTTGTAT+CGG | 0.438986 | 4.2:+28767029 | None:intergenic |
| CTTGTAGATGCTGTTGAAAA+AGG | 0.445193 | 4.2:-28767838 | MS.gene045420:CDS |
| GAAGGTGCTGTTGATGAAAA+TGG | 0.445503 | 4.2:-28766577 | MS.gene045420:CDS |
| TTGATGATGATGGTACTCTA+TGG | 0.447920 | 4.2:+28767067 | None:intergenic |
| ATCGATCGAGGGAGAGGGAG+AGG | 0.452265 | 4.2:+28769972 | None:intergenic |
| GTAATTGTTGGTTCTGGCTG+TGG | 0.452941 | 4.2:-28768366 | MS.gene045420:CDS |
| GAGGGAGAGGGAGAGGGAGA+GGG | 0.453127 | 4.2:+28769979 | None:intergenic |
| GTGGTGGTTCAGCTGTTAAT+TGG | 0.455365 | 4.2:-28768155 | MS.gene045420:CDS |
| TGGCTTCTAGCAACGAGGTT+GGG | 0.458420 | 4.2:-28768910 | MS.gene045420:CDS |
| ACATACATACATACCTCGTC+AGG | 0.461078 | 4.2:+28770045 | None:intergenic |
| TGCTATGCCTCAGTAAGAAA+TGG | 0.464395 | 4.2:-28768867 | MS.gene045420:CDS |
| AAAATCAAGTATTAAGAAAA+GGG | 0.465765 | 4.2:-28767981 | MS.gene045420:CDS |
| TCATATTGTTGGTCCATTGA+AGG | 0.466560 | 4.2:+28768240 | None:intergenic |
| AAAGGTGCTGTGATAATAAC+AGG | 0.471872 | 4.2:-28767820 | MS.gene045420:CDS |
| CATATTCAGCACTATATCCA+TGG | 0.471948 | 4.2:-28766984 | MS.gene045420:CDS |
| TATGTTTCCTTCACTGCCAA+TGG | 0.474427 | 4.2:-28770133 | MS.gene045420:CDS |
| GATGCGGTAATTGTTGGTTC+TGG | 0.474625 | 4.2:-28768372 | MS.gene045420:CDS |
| TTTCGGATCGATCGAGGGAG+AGG | 0.475766 | 4.2:+28769966 | None:intergenic |
| TCAAATGGGGAGTTGTAGAA+TGG | 0.477133 | 4.2:-28766614 | MS.gene045420:CDS |
| TTGCATTAAAACACCAGAAA+AGG | 0.481522 | 4.2:-28768127 | MS.gene045420:CDS |
| GTTGGTTCTGGCTGTGGAGG+AGG | 0.482681 | 4.2:-28768360 | MS.gene045420:CDS |
| GGTAACAATGCTCCTTCCAT+TGG | 0.483905 | 4.2:+28766670 | None:intergenic |
| CAGAAAAGGTGTTGAAAGAA+TGG | 0.485140 | 4.2:-28768113 | MS.gene045420:CDS |
| CTTGATTCATCATCATCCAT+TGG | 0.494921 | 4.2:+28770117 | None:intergenic |
| TGATGAAAATGGTGAGAGTT+GGG | 0.496388 | 4.2:-28766566 | MS.gene045420:CDS |
| CCTAACAGGTAAAGCGAATG+AGG | 0.496951 | 4.2:-28767109 | MS.gene045420:intron |
| ATACATACCTCGTCAGGGAT+TGG | 0.499058 | 4.2:+28770051 | None:intergenic |
| CATAGAGTATCTATCTGCTA+TGG | 0.499902 | 4.2:-28768058 | MS.gene045420:CDS |
| GCAGGTTCAACAGTAGGTGG+TGG | 0.500248 | 4.2:-28768171 | MS.gene045420:CDS |
| AAATGTGATGCGGTAATTGT+TGG | 0.502713 | 4.2:-28768378 | MS.gene045420:CDS |
| TGGAGTCTAGTGTGGCATTG+AGG | 0.503710 | 4.2:+28768421 | None:intergenic |
| ATTGTTGGTTCTGGCTGTGG+AGG | 0.505457 | 4.2:-28768363 | MS.gene045420:CDS |
| GAAGATTATTCATCACTAGA+AGG | 0.507111 | 4.2:-28768264 | MS.gene045420:CDS |
| ATCCGAAAGAAGTTCCTGAA+TGG | 0.507576 | 4.2:-28769951 | MS.gene045420:CDS |
| AAAGTGGTTGTTCTAGAGAA+AGG | 0.509206 | 4.2:-28768303 | MS.gene045420:CDS |
| GAATCATCATTTGATGATGA+TGG | 0.513986 | 4.2:+28767057 | None:intergenic |
| ATCACTAGAAGGTCCTTCAA+TGG | 0.515670 | 4.2:-28768253 | MS.gene045420:CDS |
| AGTGTGCTTCCAACTGCTGT+TGG | 0.516894 | 4.2:-28766514 | MS.gene045420:CDS |
| TAATGAGAACACTAGCGAAA+AGG | 0.517011 | 4.2:-28766722 | MS.gene045420:CDS |
| AACTTCTTTCGGATCGATCG+AGG | 0.517198 | 4.2:+28769960 | None:intergenic |
| TGCTGAGATGTTAGCAAAGA+GGG | 0.518378 | 4.2:-28768971 | MS.gene045420:CDS |
| AGAAGAAAACAAAGAGGCAT+AGG | 0.523278 | 4.2:+28768728 | None:intergenic |
| AGAAGGAAAGAAAGATGAGA+AGG | 0.523803 | 4.2:-28770254 | None:intergenic |
| GCAGCAGGAGCAGTTGAAGT+AGG | 0.525512 | 4.2:-28766778 | MS.gene045420:CDS |
| CTGAGAATTCTAATAGCAGC+AGG | 0.529888 | 4.2:-28766793 | MS.gene045420:CDS |
| AATGAAAATTGTACACAAGA+AGG | 0.531263 | 4.2:-28768009 | MS.gene045420:CDS |
| TCATCATCCATTGGCAGTGA+AGG | 0.531597 | 4.2:+28770126 | None:intergenic |
| TTGATTGAATAGTAATCATA+GGG | 0.531890 | 4.2:+28766485 | None:intergenic |
| TGTTGATACTTCATATCCAA+TGG | 0.534466 | 4.2:+28768554 | None:intergenic |
| TTCGGATCGATCGAGGGAGA+GGG | 0.536122 | 4.2:+28769967 | None:intergenic |
| AATCCAGCATGGAAAGCCAT+TGG | 0.536851 | 4.2:-28768570 | MS.gene045420:CDS |
| ATAATTGAAACACCATTACT+AGG | 0.540718 | 4.2:-28767015 | MS.gene045420:CDS |
| TATAGATAGTGTTTATCCAA+TGG | 0.540962 | 4.2:-28766686 | MS.gene045420:CDS |
| ATGGCTTCTAGCAACGAGGT+TGG | 0.542866 | 4.2:-28768911 | MS.gene045420:CDS |
| ACTTCTTTCGGATCGATCGA+GGG | 0.547424 | 4.2:+28769961 | None:intergenic |
| TTGATGAAAATGGTGAGAGT+TGG | 0.551525 | 4.2:-28766567 | MS.gene045420:CDS |
| AAGAGAAAAGATTGTGCAGA+GGG | 0.551533 | 4.2:-28768806 | MS.gene045420:CDS |
| CAAATGGGGAGTTGTAGAAT+GGG | 0.552016 | 4.2:-28766613 | MS.gene045420:CDS |
| TTCATCCCGTGCTAATGACA+TGG | 0.554731 | 4.2:-28767576 | MS.gene045420:CDS |
| GGGTTAACACCAACAGCAGT+TGG | 0.556806 | 4.2:+28766505 | None:intergenic |
| AACATATTGGAACATAAATG+TGG | 0.557984 | 4.2:+28769893 | None:intergenic |
| GCTTCTGTCCTATCAAAAGC+TGG | 0.558239 | 4.2:-28768330 | MS.gene045420:CDS |
| GAACCACAATAATGATTCCC+TGG | 0.558303 | 4.2:+28767913 | None:intergenic |
| AAACCGCTAGAAATCATCAA+TGG | 0.561746 | 4.2:+28767631 | None:intergenic |
| AATCATTATTGTGGTTCATG+TGG | 0.563673 | 4.2:-28767907 | MS.gene045420:CDS |
| TATCCCCATGTCATTAGCAC+GGG | 0.567787 | 4.2:+28767571 | None:intergenic |
| GACAAAGAGAATATGAGAGC+TGG | 0.568725 | 4.2:-28766829 | MS.gene045420:CDS |
| GCAAAAGTAACAATTTCAGC+AGG | 0.569600 | 4.2:-28767673 | MS.gene045420:CDS |
| TTAGCACGGGATGAAGATGA+AGG | 0.570366 | 4.2:+28767584 | None:intergenic |
| TAGTCTAGTCCTGATTCCCA+TGG | 0.571034 | 4.2:+28766967 | None:intergenic |
| GGTGAGAGTTGGGAAGCTGA+AGG | 0.571561 | 4.2:-28766556 | MS.gene045420:CDS |
| GTATGTATGTATGTATTCAT+CGG | 0.572104 | 4.2:-28770024 | MS.gene045420:CDS |
| TCGATCGAGGGAGAGGGAGA+GGG | 0.576132 | 4.2:+28769973 | None:intergenic |
| ATGGAAGGAGCATTGTTACC+AGG | 0.577349 | 4.2:-28766667 | MS.gene045420:CDS |
| GACCAACAATATGAAAATGG+AGG | 0.578079 | 4.2:-28768231 | MS.gene045420:CDS |
| TCATCCCGTGCTAATGACAT+GGG | 0.581174 | 4.2:-28767575 | MS.gene045420:CDS |
| GGGAGTGTCATCCATTGTTG+AGG | 0.581648 | 4.2:-28770233 | MS.gene045420:CDS |
| AAGTTCCTGAATGGAATGCA+AGG | 0.582894 | 4.2:-28769942 | MS.gene045420:CDS |
| TAGAATGGGAGTGAATGAAA+AGG | 0.583569 | 4.2:-28766599 | MS.gene045420:CDS |
| TCACCAGGGAATCATTATTG+TGG | 0.584122 | 4.2:-28767916 | MS.gene045420:CDS |
| TCTCTCACACCCCTCAACAA+TGG | 0.586246 | 4.2:+28770222 | None:intergenic |
| CGATTGAATTCAATTTGTAG+CGG | 0.586554 | 4.2:+28766851 | None:intergenic |
| AACAAGGGACTCAAGTTACA+TGG | 0.588903 | 4.2:-28767861 | MS.gene045420:CDS |
| GATAGTGTTTATCCAATGGA+AGG | 0.590334 | 4.2:-28766682 | MS.gene045420:CDS |
| TACAAATTCCAATTCTCACC+TGG | 0.591010 | 4.2:+28766649 | None:intergenic |
| TTGGCAGGTTCAACAGTAGG+TGG | 0.592216 | 4.2:-28768174 | MS.gene045420:CDS |
| GGAGTGTCATCCATTGTTGA+GGG | 0.596554 | 4.2:-28770232 | MS.gene045420:CDS |
| AAAGTAACAATTTCAGCAGG+TGG | 0.598692 | 4.2:-28767670 | MS.gene045420:CDS |
| GAAACTGTGTGTGAGAGGAT+TGG | 0.599841 | 4.2:-28768036 | MS.gene045420:CDS |
| ACAGCTTCGATGTGCATGGT+GGG | 0.600087 | 4.2:-28769918 | MS.gene045420:CDS |
| CTATGGAAACTGTGTGTGAG+AGG | 0.600732 | 4.2:-28768041 | MS.gene045420:CDS |
| TTCTTGAATCAATAGAAGCT+AGG | 0.600875 | 4.2:+28768205 | None:intergenic |
| GAAGGAAAGAAAGATGAGAA+GGG | 0.601594 | 4.2:-28770253 | None:intergenic |
| GTATCCCCATGTCATTAGCA+CGG | 0.602417 | 4.2:+28767570 | None:intergenic |
| ACCAACAATATGAAAATGGA+GGG | 0.602438 | 4.2:-28768230 | MS.gene045420:CDS |
| ATATTCAGCACTATATCCAT+GGG | 0.603766 | 4.2:-28766983 | MS.gene045420:CDS |
| CAACAATCTCTATCTAACAA+AGG | 0.604364 | 4.2:-28768444 | MS.gene045420:CDS |
| TTGGCAAAGACTTTAAGTAG+TGG | 0.611941 | 4.2:-28767721 | MS.gene045420:CDS |
| GGTGGAAAAGTAACAACAGA+GGG | 0.613491 | 4.2:-28766880 | MS.gene045420:CDS |
| TAAAGGGCCATTTCTTACTG+AGG | 0.621637 | 4.2:+28768860 | None:intergenic |
| CAAATATCCAATCCCTGACG+AGG | 0.622503 | 4.2:-28770058 | MS.gene045420:CDS |
| TATAGTGCTGAATATGATGA+TGG | 0.622796 | 4.2:+28766991 | None:intergenic |
| TGTCCAAAAGGAGAGAAACA+AGG | 0.624436 | 4.2:-28767877 | MS.gene045420:CDS |
| ACAATAATAAGAGACAAAGC+AGG | 0.625178 | 4.2:-28766901 | MS.gene045420:CDS |
| ATCAAAAGCTGGCTACAAAG+TGG | 0.627865 | 4.2:-28768319 | MS.gene045420:CDS |
| GTGAGAGTTGGGAAGCTGAA+GGG | 0.632909 | 4.2:-28766555 | MS.gene045420:CDS |
| CTAACAGGTAAAGCGAATGA+GGG | 0.633458 | 4.2:-28767108 | MS.gene045420:intron |
| GAATCAAAATCAGATCTCAA+AGG | 0.635229 | 4.2:-28767541 | MS.gene045420:intron |
| ATGGGAGTGAATGAAAAGGA+AGG | 0.638461 | 4.2:-28766595 | MS.gene045420:CDS |
| GAAGTAGGAACACACAGAAG+TGG | 0.639178 | 4.2:-28766763 | MS.gene045420:CDS |
| ACATATTGGAACATAAATGT+GGG | 0.639636 | 4.2:+28769894 | None:intergenic |
| CCCAAGAGAAGAAAACAAAG+AGG | 0.641068 | 4.2:+28768722 | None:intergenic |
| TTGCTGAGATGTTAGCAAAG+AGG | 0.642160 | 4.2:-28768972 | MS.gene045420:CDS |
| AAAATGGTGATAATCCAGCA+TGG | 0.647627 | 4.2:-28768581 | MS.gene045420:CDS |
| TATGATGATGGTCCTAGTAA+TGG | 0.648405 | 4.2:+28767003 | None:intergenic |
| CCTCAAAATCAAATGTGATG+CGG | 0.648723 | 4.2:-28768388 | MS.gene045420:CDS |
| ATAATAAGAGACAAAGCAGG+TGG | 0.649057 | 4.2:-28766898 | MS.gene045420:CDS |
| CCGCTAGAAATCATCAATGG+AGG | 0.650624 | 4.2:+28767634 | None:intergenic |
| AGGAACAGCTTCGATGTGCA+TGG | 0.651874 | 4.2:-28769922 | MS.gene045420:CDS |
| ACAGGTAAAGCGAATGAGGG+AGG | 0.655166 | 4.2:-28767105 | MS.gene045420:intron |
| CCTCCATTGATGATTTCTAG+CGG | 0.656669 | 4.2:-28767634 | MS.gene045420:CDS |
| GAGAATCGCAAATACAAACA+TGG | 0.657233 | 4.2:-28770201 | MS.gene045420:CDS |
| ATCGCTCACAAGCATATGTG+AGG | 0.657257 | 4.2:-28770157 | MS.gene045420:CDS |
| GGTGTTGAAAGAATGGTCAG+AGG | 0.659062 | 4.2:-28768106 | MS.gene045420:CDS |
| GTCCAAAAGGAGAGAAACAA+GGG | 0.659274 | 4.2:-28767876 | MS.gene045420:CDS |
| TATGTGCCAAGAAATTCACC+AGG | 0.661064 | 4.2:-28767931 | MS.gene045420:CDS |
| AACAGCTTCGATGTGCATGG+TGG | 0.661511 | 4.2:-28769919 | MS.gene045420:CDS |
| GTAGGAACACACAGAAGTGG+TGG | 0.662276 | 4.2:-28766760 | MS.gene045420:CDS |
| ATACTTCTGCTCATCAAATG+GGG | 0.665706 | 4.2:-28766627 | MS.gene045420:CDS |
| GGATGATGATGAATCAAGCA+AGG | 0.668966 | 4.2:-28770112 | MS.gene045420:CDS |
| AAAGAGAAAAGATTGTGCAG+AGG | 0.669869 | 4.2:-28768807 | MS.gene045420:CDS |
| CATACATACATACCTCGTCA+GGG | 0.683001 | 4.2:+28770046 | None:intergenic |
| GAGTGTCATCCATTGTTGAG+GGG | 0.685569 | 4.2:-28770231 | MS.gene045420:CDS |
| TAACAGGATGCAAAGCTGAG+AGG | 0.688213 | 4.2:-28767804 | MS.gene045420:CDS |
| CATCCCGTGCTAATGACATG+GGG | 0.693536 | 4.2:-28767574 | MS.gene045420:CDS |
| AGGTGGAAAAGTAACAACAG+AGG | 0.719048 | 4.2:-28766881 | MS.gene045420:CDS |
| ATGTGCCAAGAAATTCACCA+GGG | 0.759136 | 4.2:-28767930 | MS.gene045420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCAAGTATTAAGAAAA+GGG | - | chr4.2:28768685-28768704 | MS.gene045420:intron | 15.0% |
| !! | ATAATTAATCATTATTGAGT+TGG | - | chr4.2:28767387-28767406 | MS.gene045420:intron | 15.0% |
| !! | CATTGAATAATTAATGTATT+TGG | - | chr4.2:28767165-28767184 | MS.gene045420:intron | 15.0% |
| !! | TAATTAATCATTATTGAGTT+GGG | - | chr4.2:28767388-28767407 | MS.gene045420:intron | 15.0% |
| !! | TGTCATAAAGTTTATAAATT+TGG | - | chr4.2:28767421-28767440 | MS.gene045420:intron | 15.0% |
| !!! | ATAATTTTTTTTTTCTTCCT+AGG | - | chr4.2:28769502-28769521 | MS.gene045420:intron | 15.0% |
| !!! | ATCATGTTATAAATTTTGAA+TGG | - | chr4.2:28767664-28767683 | MS.gene045420:CDS | 15.0% |
| !!! | TTATGTGTATTTTTTTTTGT+GGG | - | chr4.2:28766981-28767000 | MS.gene045420:CDS | 15.0% |
| !!! | TTTTTTTATAAACATGGTAT+TGG | - | chr4.2:28769196-28769215 | MS.gene045420:intron | 15.0% |
| !!! | TTTTTTTGTTATAACAAACT+TGG | - | chr4.2:28767272-28767291 | MS.gene045420:intron | 15.0% |
| !! | CAAAATCAAGTATTAAGAAA+AGG | - | chr4.2:28768684-28768703 | MS.gene045420:intron | 20.0% |
| !! | GGTTTAAAGAATAAAAACAT+TGG | - | chr4.2:28769053-28769072 | MS.gene045420:intron | 20.0% |
| !! | TTATAAACTTTATGACAACT+TGG | + | chr4.2:28767418-28767437 | None:intergenic | 20.0% |
| !! | TTGATTGAATAGTAATCATA+GGG | + | chr4.2:28770184-28770203 | None:intergenic | 20.0% |
| !!! | AAGTGTTTTTTCTGAATATT+TGG | + | chr4.2:28767336-28767355 | None:intergenic | 20.0% |
| !!! | ATTTTCCAACCTTATTTTTA+AGG | - | chr4.2:28767529-28767548 | MS.gene045420:intron | 20.0% |
| !!! | CTTATGTGTATTTTTTTTTG+TGG | - | chr4.2:28766980-28766999 | MS.gene045420:CDS | 20.0% |
| !!! | CTTTTCTTAATACTTGATTT+TGG | + | chr4.2:28768686-28768705 | None:intergenic | 20.0% |
| !!! | GTTTAATTTTGATGTATTGT+TGG | + | chr4.2:28768010-28768029 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGATTCCTTTTTT+AGG | + | chr4.2:28767229-28767248 | None:intergenic | 20.0% |
| !!! | TAAGAAATGATTCATTTTCT+AGG | - | chr4.2:28767140-28767159 | MS.gene045420:intron | 20.0% |
| !!! | TATGTGTATTTTTTTTTGTG+GGG | - | chr4.2:28766982-28767001 | MS.gene045420:CDS | 20.0% |
| !!! | TATTGATTAGAGTGATTTTA+TGG | - | chr4.2:28767736-28767755 | MS.gene045420:CDS | 20.0% |
| !!! | TCTTTTCTTATATTTGAAAC+CGG | - | chr4.2:28767239-28767258 | MS.gene045420:intron | 20.0% |
| !!! | TGATTCAAGAATACTTATTT+TGG | - | chr4.2:28768473-28768492 | MS.gene045420:CDS | 20.0% |
| !!! | TTCTATAATTCCTTTTTCAA+GGG | + | chr4.2:28768175-28768194 | None:intergenic | 20.0% |
| !!! | TTTCTATAATTCCTTTTTCA+AGG | + | chr4.2:28768176-28768195 | None:intergenic | 20.0% |
| ! | AAATAAGGTTGGAAAATGAT+TGG | + | chr4.2:28767526-28767545 | None:intergenic | 25.0% |
| ! | AACAATGCATAAAATATGCA+AGG | + | chr4.2:28767020-28767039 | None:intergenic | 25.0% |
| ! | AACAGAAAGAAGAAATGTTT+GGG | - | chr4.2:28768918-28768937 | MS.gene045420:CDS | 25.0% |
| ! | AACATATTGGAACATAAATG+TGG | + | chr4.2:28766776-28766795 | None:intergenic | 25.0% |
| ! | AATGAAAATTGTACACAAGA+AGG | - | chr4.2:28768657-28768676 | MS.gene045420:intron | 25.0% |
| ! | ACATATTGGAACATAAATGT+GGG | + | chr4.2:28766775-28766794 | None:intergenic | 25.0% |
| ! | ATAATTGAAACACCATTACT+AGG | - | chr4.2:28769651-28769670 | MS.gene045420:intron | 25.0% |
| ! | CAATACCTTAAAAATAAGGT+TGG | + | chr4.2:28767537-28767556 | None:intergenic | 25.0% |
| ! | CATTGAGTAGTTAATGTATT+TGG | + | chr4.2:28767204-28767223 | None:intergenic | 25.0% |
| ! | CCAACAATACCTTAAAAATA+AGG | + | chr4.2:28767541-28767560 | None:intergenic | 25.0% |
| ! | GTATGTATGTATGTATTCAT+CGG | - | chr4.2:28766642-28766661 | MS.gene045420:CDS | 25.0% |
| ! | GTTGATTGAATAGTAATCAT+AGG | + | chr4.2:28770185-28770204 | None:intergenic | 25.0% |
| ! | TAAACGAATGCAATTCTAAA+AGG | + | chr4.2:28767909-28767928 | None:intergenic | 25.0% |
| ! | TACCAATATACTTAAGAAAG+TGG | - | chr4.2:28768044-28768063 | MS.gene045420:CDS | 25.0% |
| ! | TATAGATAGTGTTTATCCAA+TGG | - | chr4.2:28769980-28769999 | MS.gene045420:CDS | 25.0% |
| ! | TTCAATTATTGCTCTTGTAT+CGG | + | chr4.2:28769640-28769659 | None:intergenic | 25.0% |
| ! | TTCTAGTGATGAATAATCTT+CGG | + | chr4.2:28768403-28768422 | None:intergenic | 25.0% |
| ! | TTTGAAAATAGCTACAAGAA+TGG | - | chr4.2:28768891-28768910 | MS.gene045420:CDS | 25.0% |
| !! | AATAGGATTGTAGATTTTCT+TGG | - | chr4.2:28770221-28770240 | MS.gene045420:CDS | 25.0% |
| !! | ATTGTAGATTTTCTTGGAAA+GGG | - | chr4.2:28770227-28770246 | MS.gene045420:CDS | 25.0% |
| !! | CTGCATTTTGTATTTCAAAT+AGG | - | chr4.2:28770204-28770223 | MS.gene045420:CDS | 25.0% |
| !! | GTGTAAATTCTTTTATAGCA+AGG | + | chr4.2:28767988-28768007 | None:intergenic | 25.0% |
| !! | TATAAATTTTGAATGGCAAC+AGG | - | chr4.2:28767671-28767690 | MS.gene045420:CDS | 25.0% |
| !! | TCATTTCTTATATTTGAGAC+CGG | + | chr4.2:28767130-28767149 | None:intergenic | 25.0% |
| !!! | ATTTTGTAGGTTGATGAAAA+TGG | - | chr4.2:28768069-28768088 | MS.gene045420:CDS | 25.0% |
| !!! | CCTTATTTTTAAGGTATTGT+TGG | - | chr4.2:28767538-28767557 | MS.gene045420:intron | 25.0% |
| !!! | CGTGTTTAACTATTTTTGTT+AGG | + | chr4.2:28766875-28766894 | None:intergenic | 25.0% |
| !!! | TCTATAATTCCTTTTTCAAG+GGG | + | chr4.2:28768174-28768193 | None:intergenic | 25.0% |
| !!! | TTTTAGGTGCATATTTTGTT+AGG | - | chr4.2:28766929-28766948 | MS.gene045420:CDS | 25.0% |
| AACTAAAATTATACTCCCTC+CGG | - | chr4.2:28767108-28767127 | MS.gene045420:intron | 30.0% | |
| AATCATTATTGTGGTTCATG+TGG | - | chr4.2:28768759-28768778 | MS.gene045420:CDS | 30.0% | |
| ACAATAATAAGAGACAAAGC+AGG | - | chr4.2:28769765-28769784 | MS.gene045420:intron | 30.0% | |
| ACCAACAATATGAAAATGGA+GGG | - | chr4.2:28768436-28768455 | MS.gene045420:CDS | 30.0% | |
| ATATTCAGCACTATATCCAT+GGG | - | chr4.2:28769683-28769702 | MS.gene045420:intron | 30.0% | |
| ATGGACCAACAATATGAAAA+TGG | - | chr4.2:28768432-28768451 | MS.gene045420:CDS | 30.0% | |
| CAACAATCTCTATCTAACAA+AGG | - | chr4.2:28768222-28768241 | MS.gene045420:CDS | 30.0% | |
| CAACAGAAAGAAGAAATGTT+TGG | - | chr4.2:28768917-28768936 | MS.gene045420:CDS | 30.0% | |
| CGATTGAATTCAATTTGTAG+CGG | + | chr4.2:28769818-28769837 | None:intergenic | 30.0% | |
| CTACTCAATGAACCTAAAAA+AGG | - | chr4.2:28767214-28767233 | MS.gene045420:intron | 30.0% | |
| GAAGATTATTCATCACTAGA+AGG | - | chr4.2:28768402-28768421 | MS.gene045420:CDS | 30.0% | |
| GAATCAAAATCAGATCTCAA+AGG | - | chr4.2:28769125-28769144 | MS.gene045420:intron | 30.0% | |
| GTCCACTTTCTTAAGTATAT+TGG | + | chr4.2:28768049-28768068 | None:intergenic | 30.0% | |
| TATACTTCTGCTCATCAAAT+GGG | - | chr4.2:28770038-28770057 | MS.gene045420:CDS | 30.0% | |
| TCTAGTGATGAATAATCTTC+GGG | + | chr4.2:28768402-28768421 | None:intergenic | 30.0% | |
| TGTTGATACTTCATATCCAA+TGG | + | chr4.2:28768115-28768134 | None:intergenic | 30.0% | |
| TTCTTGAATCAATAGAAGCT+AGG | + | chr4.2:28768464-28768483 | None:intergenic | 30.0% | |
| TTGCATTAAAACACCAGAAA+AGG | - | chr4.2:28768539-28768558 | MS.gene045420:CDS | 30.0% | |
| ! | ATACAAACATGGATTTTCTG+TGG | - | chr4.2:28766476-28766495 | MS.gene045420:CDS | 30.0% |
| ! | GATTGTAGATTTTCTTGGAA+AGG | - | chr4.2:28770226-28770245 | MS.gene045420:CDS | 30.0% |
| ! | TAAGAAAGTGGACATTTTGT+AGG | - | chr4.2:28768056-28768075 | MS.gene045420:CDS | 30.0% |
| ! | TATAGTGCTGAATATGATGA+TGG | + | chr4.2:28769678-28769697 | None:intergenic | 30.0% |
| ! | TTCTTATATTTGAAACCGGA+GGG | - | chr4.2:28767243-28767262 | MS.gene045420:intron | 30.0% |
| ! | TTTCTTATATTTGAAACCGG+AGG | - | chr4.2:28767242-28767261 | MS.gene045420:intron | 30.0% |
| !! | GAATCATCATTTGATGATGA+TGG | + | chr4.2:28769612-28769631 | None:intergenic | 30.0% |
| !! | GCTATATTTGTTTTCAGTCA+AGG | - | chr4.2:28766817-28766836 | MS.gene045420:CDS | 30.0% |
| !!! | TCAAGAATACTTATTTTGGC+AGG | - | chr4.2:28768477-28768496 | MS.gene045420:CDS | 30.0% |
| !!! | TTGAGATCTGATTTTGATTC+TGG | + | chr4.2:28769125-28769144 | None:intergenic | 30.0% |
| AAAAAGAGACCCCTTGAAAA+AGG | - | chr4.2:28768162-28768181 | MS.gene045420:CDS | 35.0% | |
| AAAATGGTGATAATCCAGCA+TGG | - | chr4.2:28768085-28768104 | MS.gene045420:CDS | 35.0% | |
| AAACCGCTAGAAATCATCAA+TGG | + | chr4.2:28769038-28769057 | None:intergenic | 35.0% | |
| AAAGAGAAAAGATTGTGCAG+AGG | - | chr4.2:28767859-28767878 | MS.gene045420:CDS | 35.0% | |
| AAAGTAACAATTTCAGCAGG+TGG | - | chr4.2:28768996-28769015 | MS.gene045420:intron | 35.0% | |
| AAATGTGATGCGGTAATTGT+TGG | - | chr4.2:28768288-28768307 | MS.gene045420:CDS | 35.0% | |
| AAGAGAAAAGATTGTGCAGA+GGG | - | chr4.2:28767860-28767879 | MS.gene045420:CDS | 35.0% | |
| AATCCAGTAAACAATGTCTC+AGG | + | chr4.2:28769278-28769297 | None:intergenic | 35.0% | |
| ACAAAAAAAGATACTCCCTC+CGG | + | chr4.2:28767261-28767280 | None:intergenic | 35.0% | |
| ATAATAAGAGACAAAGCAGG+TGG | - | chr4.2:28769768-28769787 | MS.gene045420:intron | 35.0% | |
| ATACTTCTGCTCATCAAATG+GGG | - | chr4.2:28770039-28770058 | MS.gene045420:CDS | 35.0% | |
| CATATTCAGCACTATATCCA+TGG | - | chr4.2:28769682-28769701 | MS.gene045420:intron | 35.0% | |
| CATGTATCGCTAAATCATGT+AGG | - | chr4.2:28769416-28769435 | MS.gene045420:intron | 35.0% | |
| CCTCAAAATCAAATGTGATG+CGG | - | chr4.2:28768278-28768297 | MS.gene045420:CDS | 35.0% | |
| CTTGAGAAGTTGCTGATAAA+GGG | + | chr4.2:28767825-28767844 | None:intergenic | 35.0% | |
| CTTGATTCATCATCATCCAT+TGG | + | chr4.2:28766552-28766571 | None:intergenic | 35.0% | |
| CTTGTAGATGCTGTTGAAAA+AGG | - | chr4.2:28768828-28768847 | MS.gene045420:CDS | 35.0% | |
| GACCAACAATATGAAAATGG+AGG | - | chr4.2:28768435-28768454 | MS.gene045420:CDS | 35.0% | |
| GAGAATCGCAAATACAAACA+TGG | - | chr4.2:28766465-28766484 | MS.gene045420:CDS | 35.0% | |
| GATAGTGTTTATCCAATGGA+AGG | - | chr4.2:28769984-28770003 | MS.gene045420:CDS | 35.0% | |
| GCAAAAGTAACAATTTCAGC+AGG | - | chr4.2:28768993-28769012 | MS.gene045420:intron | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | + | chr4.2:28767014-28767033 | None:intergenic | 35.0% | |
| GTATACTTCTGCTCATCAAA+TGG | - | chr4.2:28770037-28770056 | MS.gene045420:CDS | 35.0% | |
| TAATGAGAACACTAGCGAAA+AGG | - | chr4.2:28769944-28769963 | MS.gene045420:CDS | 35.0% | |
| TACAAATTCCAATTCTCACC+TGG | + | chr4.2:28770020-28770039 | None:intergenic | 35.0% | |
| TAGAATGGGAGTGAATGAAA+AGG | - | chr4.2:28770067-28770086 | MS.gene045420:CDS | 35.0% | |
| TATTGTGGTTCATGTGGTTA+TGG | - | chr4.2:28768765-28768784 | MS.gene045420:CDS | 35.0% | |
| TCATATTGTTGGTCCATTGA+AGG | + | chr4.2:28768429-28768448 | None:intergenic | 35.0% | |
| TGATGAAAATGGTGAGAGTT+GGG | - | chr4.2:28770100-28770119 | MS.gene045420:CDS | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | + | chr4.2:28767015-28767034 | None:intergenic | 35.0% | |
| TTCCATTCAGGAACTTCTTT+CGG | + | chr4.2:28766720-28766739 | None:intergenic | 35.0% | |
| TTGATGAAAATGGTGAGAGT+TGG | - | chr4.2:28770099-28770118 | MS.gene045420:CDS | 35.0% | |
| TTGGCAAAGACTTTAAGTAG+TGG | - | chr4.2:28768945-28768964 | MS.gene045420:CDS | 35.0% | |
| ! | AGAAGAAAACAAAGAGGCAT+AGG | + | chr4.2:28767941-28767960 | None:intergenic | 35.0% |
| ! | AGTTCAGCTAAAAGGTTTTC+TGG | + | chr4.2:28767571-28767590 | None:intergenic | 35.0% |
| ! | CATAGAGTATCTATCTGCTA+TGG | - | chr4.2:28768608-28768627 | MS.gene045420:intron | 35.0% |
| ! | CATTCTTTCAACACCTTTTC+TGG | + | chr4.2:28768555-28768574 | None:intergenic | 35.0% |
| ! | GAAGAAATGTTTGGGAGTTT+TGG | - | chr4.2:28768926-28768945 | MS.gene045420:CDS | 35.0% |
| ! | GCGAGCTAATCTATAGTTTT+AGG | - | chr4.2:28766913-28766932 | MS.gene045420:CDS | 35.0% |
| ! | GTTGTTCAAGTTCAGCTAAA+AGG | + | chr4.2:28767579-28767598 | None:intergenic | 35.0% |
| ! | TCCCTCCATTTTCATATTGT+TGG | + | chr4.2:28768440-28768459 | None:intergenic | 35.0% |
| ! | TGTGTATTTCTAAGCTCATG+AGG | - | chr4.2:28767042-28767061 | MS.gene045420:CDS | 35.0% |
| ! | TTCTTATATTTGAGACCGGA+GGG | + | chr4.2:28767126-28767145 | None:intergenic | 35.0% |
| ! | TTTCTTATATTTGAGACCGG+AGG | + | chr4.2:28767127-28767146 | None:intergenic | 35.0% |
| !! | AAAGGTGCTGTGATAATAAC+AGG | - | chr4.2:28768846-28768865 | MS.gene045420:CDS | 35.0% |
| !! | AAAGTGGTTGTTCTAGAGAA+AGG | - | chr4.2:28768363-28768382 | MS.gene045420:CDS | 35.0% |
| !! | AGAAAAGGGTGTCAAAATCT+TGG | - | chr4.2:28768699-28768718 | MS.gene045420:intron | 35.0% |
| !! | CAGAAAAGGTGTTGAAAGAA+TGG | - | chr4.2:28768553-28768572 | MS.gene045420:CDS | 35.0% |
| !! | TATGATGATGGTCCTAGTAA+TGG | + | chr4.2:28769666-28769685 | None:intergenic | 35.0% |
| !! | TTGATGATGATGGTACTCTA+TGG | + | chr4.2:28769602-28769621 | None:intergenic | 35.0% |
| !!! | CCTCTTTGTTTTCTTCTCTT+GGG | - | chr4.2:28767944-28767963 | MS.gene045420:CDS | 35.0% |
| !!! | GATTTTGAGGATGTTGCTTT+TGG | + | chr4.2:28768268-28768287 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGGGGTCTCTTTT+TGG | + | chr4.2:28768163-28768182 | None:intergenic | 35.0% |
| AACAAGGGACTCAAGTTACA+TGG | - | chr4.2:28768805-28768824 | MS.gene045420:CDS | 40.0% | |
| AAGTTCCTGAATGGAATGCA+AGG | - | chr4.2:28766724-28766743 | MS.gene045420:CDS | 40.0% | |
| ACATACATACATACCTCGTC+AGG | + | chr4.2:28766624-28766643 | None:intergenic | 40.0% | |
| AGCAGCTACGTGTAACATAT+TGG | + | chr4.2:28766789-28766808 | None:intergenic | 40.0% | |
| AGGTGGAAAAGTAACAACAG+AGG | - | chr4.2:28769785-28769804 | MS.gene045420:intron | 40.0% | |
| ATCAAAAGCTGGCTACAAAG+TGG | - | chr4.2:28768347-28768366 | MS.gene045420:CDS | 40.0% | |
| ATCACTAGAAGGTCCTTCAA+TGG | - | chr4.2:28768413-28768432 | MS.gene045420:CDS | 40.0% | |
| ATCCGAAAGAAGTTCCTGAA+TGG | - | chr4.2:28766715-28766734 | MS.gene045420:CDS | 40.0% | |
| ATGGGAGTGAATGAAAAGGA+AGG | - | chr4.2:28770071-28770090 | MS.gene045420:CDS | 40.0% | |
| ATGTGCCAAGAAATTCACCA+GGG | - | chr4.2:28768736-28768755 | MS.gene045420:CDS | 40.0% | |
| CAAATGGGGAGTTGTAGAAT+GGG | - | chr4.2:28770053-28770072 | MS.gene045420:CDS | 40.0% | |
| CAACTTCTCAAGCTTGTCTT+TGG | - | chr4.2:28767833-28767852 | MS.gene045420:CDS | 40.0% | |
| CATACATACATACCTCGTCA+GGG | + | chr4.2:28766623-28766642 | None:intergenic | 40.0% | |
| CATTGTTACCAGGTGAGAAT+TGG | - | chr4.2:28770009-28770028 | MS.gene045420:CDS | 40.0% | |
| CCCAAGAGAAGAAAACAAAG+AGG | + | chr4.2:28767947-28767966 | None:intergenic | 40.0% | |
| CTAACAGGTAAAGCGAATGA+GGG | - | chr4.2:28769558-28769577 | MS.gene045420:intron | 40.0% | |
| CTGAGAATTCTAATAGCAGC+AGG | - | chr4.2:28769873-28769892 | MS.gene045420:intron | 40.0% | |
| CTTTACCTGTTAGGAATCAC+AGG | + | chr4.2:28769551-28769570 | None:intergenic | 40.0% | |
| CTTTCCCGATAATTAGTGTC+TGG | - | chr4.2:28769236-28769255 | MS.gene045420:intron | 40.0% | |
| GAACCACAATAATGATTCCC+TGG | + | chr4.2:28768756-28768775 | None:intergenic | 40.0% | |
| GAACCTGAGACATTGTTTAC+TGG | - | chr4.2:28769272-28769291 | MS.gene045420:intron | 40.0% | |
| GACAAAGAGAATATGAGAGC+TGG | - | chr4.2:28769837-28769856 | MS.gene045420:intron | 40.0% | |
| GAGACCAGACACTAATTATC+GGG | + | chr4.2:28769243-28769262 | None:intergenic | 40.0% | |
| GCTTGAGAAGTTGCTGATAA+AGG | + | chr4.2:28767826-28767845 | None:intergenic | 40.0% | |
| GGAGACCAGACACTAATTAT+CGG | + | chr4.2:28769244-28769263 | None:intergenic | 40.0% | |
| GGTGGAAAAGTAACAACAGA+GGG | - | chr4.2:28769786-28769805 | MS.gene045420:intron | 40.0% | |
| GTCCAAAAGGAGAGAAACAA+GGG | - | chr4.2:28768790-28768809 | MS.gene045420:CDS | 40.0% | |
| TAAACAATGTCTCAGGTTCG+AGG | + | chr4.2:28769271-28769290 | None:intergenic | 40.0% | |
| TAAAGGGCCATTTCTTACTG+AGG | + | chr4.2:28767809-28767828 | None:intergenic | 40.0% | |
| TAGATGAAGATTCAGCTCCT+AGG | + | chr4.2:28769522-28769541 | None:intergenic | 40.0% | |
| TATGTGCCAAGAAATTCACC+AGG | - | chr4.2:28768735-28768754 | MS.gene045420:CDS | 40.0% | |
| TATGTTTCCTTCACTGCCAA+TGG | - | chr4.2:28766533-28766552 | MS.gene045420:CDS | 40.0% | |
| TCAAATGGGGAGTTGTAGAA+TGG | - | chr4.2:28770052-28770071 | MS.gene045420:CDS | 40.0% | |
| TCACCAGGGAATCATTATTG+TGG | - | chr4.2:28768750-28768769 | MS.gene045420:CDS | 40.0% | |
| TGATTCCCTGGTGAATTTCT+TGG | + | chr4.2:28768744-28768763 | None:intergenic | 40.0% | |
| TGCTATGCCTCAGTAAGAAA+TGG | - | chr4.2:28767799-28767818 | MS.gene045420:CDS | 40.0% | |
| TGCTGAGATGTTAGCAAAGA+GGG | - | chr4.2:28767695-28767714 | MS.gene045420:CDS | 40.0% | |
| TGTCCAAAAGGAGAGAAACA+AGG | - | chr4.2:28768789-28768808 | MS.gene045420:CDS | 40.0% | |
| TGTGGTTATGGTTGTCCAAA+AGG | - | chr4.2:28768777-28768796 | MS.gene045420:CDS | 40.0% | |
| TTGCTGAGATGTTAGCAAAG+AGG | - | chr4.2:28767694-28767713 | MS.gene045420:CDS | 40.0% | |
| ! | CCTCCATTGATGATTTCTAG+CGG | - | chr4.2:28769032-28769051 | MS.gene045420:intron | 40.0% |
| ! | CTTTGTAGCCAGCTTTTGAT+AGG | + | chr4.2:28768347-28768366 | None:intergenic | 40.0% |
| ! | GGATGATGATGAATCAAGCA+AGG | - | chr4.2:28766554-28766573 | MS.gene045420:CDS | 40.0% |
| ! | GTTATGAAGTGTGCTGTTCT+TGG | + | chr4.2:28769747-28769766 | None:intergenic | 40.0% |
| ! | TTGGGCACTTTCTTGATTTG+TGG | - | chr4.2:28767774-28767793 | MS.gene045420:CDS | 40.0% |
| ! | TTTTATGGCTTCTAGCAACG+AGG | - | chr4.2:28767751-28767770 | MS.gene045420:CDS | 40.0% |
| !! | ATTTTGGCAGGTTCAACAGT+AGG | - | chr4.2:28768489-28768508 | MS.gene045420:CDS | 40.0% |
| !! | CCGCATCACATTTGATTTTG+AGG | + | chr4.2:28768281-28768300 | None:intergenic | 40.0% |
| !! | GAAGGTGCTGTTGATGAAAA+TGG | - | chr4.2:28770089-28770108 | MS.gene045420:CDS | 40.0% |
| !!! | GCCTCTTTGTTTTCTTCTCT+TGG | - | chr4.2:28767943-28767962 | MS.gene045420:CDS | 40.0% |
| !!! | TGTTTTCAGTCAAGGTACTG+AGG | - | chr4.2:28766825-28766844 | MS.gene045420:CDS | 40.0% |
| AACTTCTTTCGGATCGATCG+AGG | + | chr4.2:28766709-28766728 | None:intergenic | 45.0% | |
| AATCCAGCATGGAAAGCCAT+TGG | - | chr4.2:28768096-28768115 | MS.gene045420:CDS | 45.0% | |
| ACTTCTTTCGGATCGATCGA+GGG | + | chr4.2:28766708-28766727 | None:intergenic | 45.0% | |
| ATACATACCTCGTCAGGGAT+TGG | + | chr4.2:28766618-28766637 | None:intergenic | 45.0% | |
| ATCGCTCACAAGCATATGTG+AGG | - | chr4.2:28766509-28766528 | MS.gene045420:CDS | 45.0% | |
| CAAATATCCAATCCCTGACG+AGG | - | chr4.2:28766608-28766627 | MS.gene045420:CDS | 45.0% | |
| CCGCTAGAAATCATCAATGG+AGG | + | chr4.2:28769035-28769054 | None:intergenic | 45.0% | |
| CCTAACAGGTAAAGCGAATG+AGG | - | chr4.2:28769557-28769576 | MS.gene045420:intron | 45.0% | |
| CCTCATTCGCTTTACCTGTT+AGG | + | chr4.2:28769560-28769579 | None:intergenic | 45.0% | |
| CTATGGAAACTGTGTGTGAG+AGG | - | chr4.2:28768625-28768644 | MS.gene045420:intron | 45.0% | |
| CTCGTCAGGGATTGGATATT+TGG | + | chr4.2:28766610-28766629 | None:intergenic | 45.0% | |
| CTGTTCCTTGCATTCCATTC+AGG | + | chr4.2:28766732-28766751 | None:intergenic | 45.0% | |
| GAAACTGTGTGTGAGAGGAT+TGG | - | chr4.2:28768630-28768649 | MS.gene045420:intron | 45.0% | |
| GAAGTAGGAACACACAGAAG+TGG | - | chr4.2:28769903-28769922 | MS.gene045420:intron | 45.0% | |
| GAGTGTCATCCATTGTTGAG+GGG | - | chr4.2:28766435-28766454 | MS.gene045420:CDS | 45.0% | |
| GCACTATATCCATGGGAATC+AGG | - | chr4.2:28769690-28769709 | MS.gene045420:intron | 45.0% | |
| GCTTCTGTCCTATCAAAAGC+TGG | - | chr4.2:28768336-28768355 | MS.gene045420:CDS | 45.0% | |
| GGTAACAATGCTCCTTCCAT+TGG | + | chr4.2:28769999-28770018 | None:intergenic | 45.0% | |
| GTATCCCCATGTCATTAGCA+CGG | + | chr4.2:28769099-28769118 | None:intergenic | 45.0% | |
| GTGGTGGTTCAGCTGTTAAT+TGG | - | chr4.2:28768511-28768530 | MS.gene045420:CDS | 45.0% | |
| TAACAGGATGCAAAGCTGAG+AGG | - | chr4.2:28768862-28768881 | MS.gene045420:CDS | 45.0% | |
| TAGCTCGCTATCAAGATCAG+TGG | + | chr4.2:28766901-28766920 | None:intergenic | 45.0% | |
| TAGTCTAGTCCTGATTCCCA+TGG | + | chr4.2:28769702-28769721 | None:intergenic | 45.0% | |
| TATCCAATGGCTTTCCATGC+TGG | + | chr4.2:28768102-28768121 | None:intergenic | 45.0% | |
| TATCCCCATGTCATTAGCAC+GGG | + | chr4.2:28769098-28769117 | None:intergenic | 45.0% | |
| TCATCATCCATTGGCAGTGA+AGG | + | chr4.2:28766543-28766562 | None:intergenic | 45.0% | |
| TCATCCCGTGCTAATGACAT+GGG | - | chr4.2:28769091-28769110 | MS.gene045420:intron | 45.0% | |
| TCGATCCTGTGATTCCTAAC+AGG | - | chr4.2:28769543-28769562 | MS.gene045420:intron | 45.0% | |
| TTAGCACGGGATGAAGATGA+AGG | + | chr4.2:28769085-28769104 | None:intergenic | 45.0% | |
| TTCATCCCGTGCTAATGACA+TGG | - | chr4.2:28769090-28769109 | MS.gene045420:intron | 45.0% | |
| ! | GGAGTGTCATCCATTGTTGA+GGG | - | chr4.2:28766434-28766453 | MS.gene045420:CDS | 45.0% |
| ! | GGTGTTGAAAGAATGGTCAG+AGG | - | chr4.2:28768560-28768579 | MS.gene045420:CDS | 45.0% |
| !! | ATGGAAGGAGCATTGTTACC+AGG | - | chr4.2:28769999-28770018 | MS.gene045420:CDS | 45.0% |
| !! | GATGCGGTAATTGTTGGTTC+TGG | - | chr4.2:28768294-28768313 | MS.gene045420:CDS | 45.0% |
| !! | GTAATTGTTGGTTCTGGCTG+TGG | - | chr4.2:28768300-28768319 | MS.gene045420:CDS | 45.0% |
| !! | GTCCCTTGTTTCTCTCCTTT+TGG | + | chr4.2:28768795-28768814 | None:intergenic | 45.0% |
| !!! | GGGTCTCTTTTTGGTGTCAT+TGG | + | chr4.2:28768154-28768173 | None:intergenic | 45.0% |
| !!! | GTTGCTTTTGGAGTCTAGTG+TGG | + | chr4.2:28768256-28768275 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTATAAACA+TGG | - | chr4.2:28769190-28769209 | MS.gene045420:intron | 5.0% |
| AACAGCTTCGATGTGCATGG+TGG | - | chr4.2:28766747-28766766 | MS.gene045420:CDS | 50.0% | |
| ACAGCTTCGATGTGCATGGT+GGG | - | chr4.2:28766748-28766767 | MS.gene045420:CDS | 50.0% | |
| ACAGGTAAAGCGAATGAGGG+AGG | - | chr4.2:28769561-28769580 | MS.gene045420:intron | 50.0% | |
| AGGAACAGCTTCGATGTGCA+TGG | - | chr4.2:28766744-28766763 | MS.gene045420:CDS | 50.0% | |
| AGTGTGCTTCCAACTGCTGT+TGG | - | chr4.2:28770152-28770171 | MS.gene045420:CDS | 50.0% | |
| ATGGCTTCTAGCAACGAGGT+TGG | - | chr4.2:28767755-28767774 | MS.gene045420:CDS | 50.0% | |
| CATCCCGTGCTAATGACATG+GGG | - | chr4.2:28769092-28769111 | MS.gene045420:intron | 50.0% | |
| GGGTTAACACCAACAGCAGT+TGG | + | chr4.2:28770164-28770183 | None:intergenic | 50.0% | |
| GTAGGAACACACAGAAGTGG+TGG | - | chr4.2:28769906-28769925 | MS.gene045420:CDS | 50.0% | |
| GTGAGAGTTGGGAAGCTGAA+GGG | - | chr4.2:28770111-28770130 | MS.gene045420:CDS | 50.0% | |
| TCTCTCACACCCCTCAACAA+TGG | + | chr4.2:28766447-28766466 | None:intergenic | 50.0% | |
| TGATTACGCGCTGTTACGAG+TGG | + | chr4.2:28769312-28769331 | None:intergenic | 50.0% | |
| TGGAGTCTAGTGTGGCATTG+AGG | + | chr4.2:28768248-28768267 | None:intergenic | 50.0% | |
| TGGCTTCTAGCAACGAGGTT+GGG | - | chr4.2:28767756-28767775 | MS.gene045420:CDS | 50.0% | |
| TTGGCAGGTTCAACAGTAGG+TGG | - | chr4.2:28768492-28768511 | MS.gene045420:CDS | 50.0% | |
| !! | ATTGTTGGTTCTGGCTGTGG+AGG | - | chr4.2:28768303-28768322 | MS.gene045420:CDS | 50.0% |
| !! | GGGAGTGTCATCCATTGTTG+AGG | - | chr4.2:28766433-28766452 | MS.gene045420:CDS | 50.0% |
| ATGTCTCAGGTTCGAGGCAG+TGG | + | chr4.2:28769265-28769284 | None:intergenic | 55.0% | |
| GCAGCAGGAGCAGTTGAAGT+AGG | - | chr4.2:28769888-28769907 | MS.gene045420:intron | 55.0% | |
| GCAGGTTCAACAGTAGGTGG+TGG | - | chr4.2:28768495-28768514 | MS.gene045420:CDS | 55.0% | |
| GGTGAGAGTTGGGAAGCTGA+AGG | - | chr4.2:28770110-28770129 | MS.gene045420:CDS | 55.0% | |
| TTCGGATCGATCGAGGGAGA+GGG | + | chr4.2:28766702-28766721 | None:intergenic | 55.0% | |
| TTTCGGATCGATCGAGGGAG+AGG | + | chr4.2:28766703-28766722 | None:intergenic | 55.0% | |
| ATCGATCGAGGGAGAGGGAG+AGG | + | chr4.2:28766697-28766716 | None:intergenic | 60.0% | |
| TCGATCGAGGGAGAGGGAGA+GGG | + | chr4.2:28766696-28766715 | None:intergenic | 60.0% | |
| !! | GTTGGTTCTGGCTGTGGAGG+AGG | - | chr4.2:28768306-28768325 | MS.gene045420:CDS | 60.0% |
| GAGGGAGAGGGAGAGGGAGA+GGG | + | chr4.2:28766684-28766703 | None:intergenic | 65.0% | |
| CGAGGGAGAGGGAGAGGGAG+AGG | + | chr4.2:28766691-28766710 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 28766426 | 28770262 | 28766426 | ID=MS.gene045420 |
| chr4.2 | mRNA | 28766426 | 28770262 | 28766426 | ID=MS.gene045420.t1;Parent=MS.gene045420 |
| chr4.2 | exon | 28769906 | 28770262 | 28769906 | ID=MS.gene045420.t1.exon1;Parent=MS.gene045420.t1 |
| chr4.2 | CDS | 28769906 | 28770262 | 28769906 | ID=cds.MS.gene045420.t1;Parent=MS.gene045420.t1 |
| chr4.2 | exon | 28768723 | 28768995 | 28768723 | ID=MS.gene045420.t1.exon2;Parent=MS.gene045420.t1 |
| chr4.2 | CDS | 28768723 | 28768995 | 28768723 | ID=cds.MS.gene045420.t1;Parent=MS.gene045420.t1 |
| chr4.2 | exon | 28767542 | 28768610 | 28767542 | ID=MS.gene045420.t1.exon3;Parent=MS.gene045420.t1 |
| chr4.2 | CDS | 28767542 | 28768610 | 28767542 | ID=cds.MS.gene045420.t1;Parent=MS.gene045420.t1 |
| chr4.2 | exon | 28766426 | 28767123 | 28766426 | ID=MS.gene045420.t1.exon4;Parent=MS.gene045420.t1 |
| chr4.2 | CDS | 28766426 | 28767123 | 28766426 | ID=cds.MS.gene045420.t1;Parent=MS.gene045420.t1 |
| Gene Sequence |
| Protein sequence |
