Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04619.t1 | XP_024627097.1 | 99 | 384 | 4 | 0 | 1 | 384 | 1 | 384 | 2.00E-231 | 811.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04619.t1 | P48631 | 88.0 | 383 | 45 | 1 | 1 | 383 | 1 | 382 | 1.8e-204 | 713.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04619.t1 | G7KVD5 | 99.0 | 384 | 4 | 0 | 1 | 384 | 51 | 434 | 1.5e-231 | 811.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77362 | MS.gene04619 | PPI |
| MS.gene94675 | MS.gene04619 | PPI |
| MS.gene04619 | MS.gene95615 | PPI |
| MS.gene84178 | MS.gene04619 | PPI |
| MS.gene037458 | MS.gene04619 | PPI |
| MS.gene04619 | MS.gene33504 | PPI |
| MS.gene04619 | MS.gene47828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04619.t1 | MTR_7g093200 | 98.958 | 384 | 4 | 0 | 1 | 384 | 51 | 434 | 0.0 | 793 |
| MS.gene04619.t1 | MTR_1g054035 | 79.221 | 385 | 78 | 2 | 1 | 384 | 1 | 384 | 0.0 | 629 |
| MS.gene04619.t1 | MTR_1g111880 | 66.406 | 384 | 107 | 4 | 1 | 384 | 5 | 366 | 0.0 | 511 |
| MS.gene04619.t1 | MTR_5g071170 | 38.415 | 328 | 181 | 6 | 25 | 349 | 38 | 347 | 5.30e-66 | 214 |
| MS.gene04619.t1 | MTR_7g068780 | 38.769 | 325 | 178 | 7 | 25 | 346 | 92 | 398 | 3.14e-63 | 209 |
| MS.gene04619.t1 | MTR_3g464330 | 36.890 | 328 | 186 | 7 | 25 | 349 | 29 | 338 | 4.50e-60 | 199 |
| MS.gene04619.t1 | MTR_4g015630 | 38.769 | 325 | 178 | 7 | 25 | 346 | 86 | 392 | 1.11e-59 | 199 |
| MS.gene04619.t1 | MTR_7g068780 | 33.824 | 272 | 156 | 6 | 25 | 295 | 92 | 340 | 1.42e-36 | 136 |
| MS.gene04619.t1 | MTR_2g460790 | 25.077 | 323 | 199 | 10 | 32 | 344 | 106 | 395 | 9.29e-20 | 90.9 |
| MS.gene04619.t1 | MTR_4g130980 | 23.894 | 339 | 229 | 10 | 17 | 344 | 74 | 394 | 1.27e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04619.t1 | AT3G12120 | 78.329 | 383 | 82 | 1 | 1 | 383 | 1 | 382 | 0.0 | 642 |
| MS.gene04619.t1 | AT3G12120 | 78.329 | 383 | 82 | 1 | 1 | 383 | 1 | 382 | 0.0 | 642 |
| MS.gene04619.t1 | AT2G29980 | 39.542 | 349 | 189 | 8 | 6 | 350 | 8 | 338 | 4.23e-66 | 215 |
| MS.gene04619.t1 | AT5G05580 | 38.438 | 333 | 186 | 7 | 16 | 346 | 74 | 389 | 1.64e-64 | 212 |
| MS.gene04619.t1 | AT3G11170 | 37.126 | 334 | 189 | 6 | 16 | 346 | 81 | 396 | 5.24e-64 | 211 |
| MS.gene04619.t1 | AT5G05580 | 36.957 | 322 | 184 | 7 | 16 | 335 | 74 | 378 | 9.76e-58 | 193 |
| MS.gene04619.t1 | AT2G29980 | 34.237 | 295 | 169 | 7 | 6 | 298 | 8 | 279 | 6.55e-40 | 143 |
| MS.gene04619.t1 | AT4G30950 | 24.716 | 352 | 222 | 13 | 10 | 347 | 76 | 398 | 1.86e-17 | 84.0 |
Find 136 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCAATAAAACCAATTT+TGG | 0.087341 | 7.3:-17483160 | MS.gene04619:CDS |
| ACCTGGGTTGTGTGTGTTTA+TGG | 0.124901 | 7.3:-17483414 | MS.gene04619:CDS |
| TCCTCGCCCTCTCTCTTTCT+TGG | 0.168598 | 7.3:-17483931 | MS.gene04619:CDS |
| TACTTGGCTCTCAATGTTTC+AGG | 0.193124 | 7.3:-17483582 | MS.gene04619:CDS |
| CGATAATAATCTCCCAAAAT+TGG | 0.209462 | 7.3:+17483147 | None:intergenic |
| TCTTGGCATGGCCTGCCTAC+TGG | 0.238207 | 7.3:-17483914 | MS.gene04619:CDS |
| TGGGTTGTTGCTAAGGTATT+TGG | 0.245996 | 7.3:+17483656 | None:intergenic |
| ACGTTCACGATCTGAGTAAA+TGG | 0.257106 | 7.3:+17483515 | None:intergenic |
| CTCCATAATGCCTTGTAAAA+TGG | 0.258267 | 7.3:+17483111 | None:intergenic |
| TTGATCTGGCTGAGACTAAA+TGG | 0.275742 | 7.3:+17484074 | None:intergenic |
| GGAATACTTGCAGTGTGCTT+TGG | 0.282634 | 7.3:-17483468 | MS.gene04619:CDS |
| GTTGCATTCTTACCGGTGTT+TGG | 0.301494 | 7.3:-17483881 | MS.gene04619:CDS |
| GAAGAGCAGAGTGGAGAATA+AGG | 0.302342 | 7.3:+17483793 | None:intergenic |
| GAATACTTGCAGTGTGCTTT+GGG | 0.308616 | 7.3:-17483467 | MS.gene04619:CDS |
| TCTTGGCTGGCCCCTTTACT+TGG | 0.313856 | 7.3:-17483598 | MS.gene04619:CDS |
| CTTGGCATGGCCTGCCTACT+GGG | 0.320968 | 7.3:-17483913 | MS.gene04619:CDS |
| CCATGGCCAAAGGTCTTACC+TGG | 0.338971 | 7.3:-17483431 | MS.gene04619:CDS |
| ATAGATGCTGGACTTCTGTT+TGG | 0.345381 | 7.3:+17483686 | None:intergenic |
| GCTTGTAGTCAATGGATTCT+TGG | 0.348788 | 7.3:-17483382 | MS.gene04619:CDS |
| GTGGAATGGCTTTCTTGATC+TGG | 0.350001 | 7.3:+17484060 | None:intergenic |
| TTGCATTCTTACCGGTGTTT+GGG | 0.370496 | 7.3:-17483880 | MS.gene04619:CDS |
| GCAACCGTTGACAGGGATTA+CGG | 0.380817 | 7.3:-17483276 | MS.gene04619:CDS |
| ATCCAAGGTTGCATTCTTAC+CGG | 0.383885 | 7.3:-17483888 | MS.gene04619:CDS |
| AGGAAGGTGCTGGAAGTAAT+AGG | 0.393878 | 7.3:+17483950 | None:intergenic |
| TATTGTGGAAGACCTTGTTC+AGG | 0.414861 | 7.3:+17483250 | None:intergenic |
| TTTCTCTCGGTACCTTGATC+TGG | 0.420352 | 7.3:+17483060 | None:intergenic |
| TGCCTAGTGGGTTGTTGCTA+AGG | 0.420443 | 7.3:+17483649 | None:intergenic |
| TAGATGCTGGACTTCTGTTT+GGG | 0.423886 | 7.3:+17483687 | None:intergenic |
| GGACTGGTTGAGAGGAGCTT+TGG | 0.429750 | 7.3:-17483298 | MS.gene04619:CDS |
| GCCCTCTCTCTTTCTTGGCA+TGG | 0.433876 | 7.3:-17483926 | MS.gene04619:CDS |
| GTTCCACTGCTTGTAGTCAA+TGG | 0.439920 | 7.3:-17483390 | MS.gene04619:CDS |
| GAGCTTTGGCAACCGTTGAC+AGG | 0.441178 | 7.3:-17483284 | MS.gene04619:CDS |
| CCGAGAGAAAGGGTGTATTC+TGG | 0.443942 | 7.3:-17483047 | MS.gene04619:CDS |
| GAATCGTAATGTGGCAATGC+CGG | 0.446519 | 7.3:+17483330 | None:intergenic |
| TCAAATGGCACCCGTTTCAC+AGG | 0.447648 | 7.3:+17484104 | None:intergenic |
| CCGAACCTCTGTTCCTCCTT+CGG | 0.449015 | 7.3:-17484147 | MS.gene04619:CDS |
| AACATTGAGAGCCAAGTAAA+GGG | 0.450221 | 7.3:+17483587 | None:intergenic |
| AGATCAAGGTACCGAGAGAA+AGG | 0.451627 | 7.3:-17483058 | MS.gene04619:CDS |
| AAACAACATAGGAGAATGAA+TGG | 0.463243 | 7.3:+17484012 | None:intergenic |
| AGAGAGGGCGAGGAAGGTGC+TGG | 0.467394 | 7.3:+17483940 | None:intergenic |
| AACAGAAGTCCAGCATCTAT+TGG | 0.469935 | 7.3:-17483683 | MS.gene04619:CDS |
| AGAGAATGACCCTGTGAAAC+GGG | 0.471443 | 7.3:-17484114 | MS.gene04619:CDS |
| TGTTGGAATGGTGGCGGCGA+TGG | 0.476615 | 7.3:+17483742 | None:intergenic |
| CACAACCCAGGTAAGACCTT+TGG | 0.483474 | 7.3:+17483425 | None:intergenic |
| AGAAAGAGAGAGGGCGAGGA+AGG | 0.487304 | 7.3:+17483934 | None:intergenic |
| TTTGGGAGATTATTATCGGT+TGG | 0.487437 | 7.3:-17483142 | MS.gene04619:CDS |
| CTGTATTTCCATGAAAAGTA+AGG | 0.488098 | 7.3:+17483765 | None:intergenic |
| CAGAGAATGACCCTGTGAAA+CGG | 0.491132 | 7.3:-17484115 | MS.gene04619:CDS |
| TGGCAAGCAAATCTATCATA+AGG | 0.491259 | 7.3:+17483555 | None:intergenic |
| TGGGACCATGTGGGTTAAAG+TGG | 0.493018 | 7.3:+17483535 | None:intergenic |
| AGGTTGCTGAAGATGGGAGC+TGG | 0.495708 | 7.3:-17484173 | None:intergenic |
| CAAATATATGTATCAGATGC+AGG | 0.495723 | 7.3:-17483489 | MS.gene04619:CDS |
| AATAGGTGGCAACGTAATAG+AGG | 0.500007 | 7.3:+17483967 | None:intergenic |
| GCCAAGAAAGAGAGAGGGCG+AGG | 0.502849 | 7.3:+17483930 | None:intergenic |
| AATCGTAATGTGGCAATGCC+GGG | 0.512224 | 7.3:+17483331 | None:intergenic |
| CGTTCACGATCTGAGTAAAT+GGG | 0.515704 | 7.3:+17483516 | None:intergenic |
| ATTACCATCACCCTCACTCT+TGG | 0.516387 | 7.3:-17483615 | MS.gene04619:CDS |
| AAACATTGAGAGCCAAGTAA+AGG | 0.522475 | 7.3:+17483586 | None:intergenic |
| ACGATTCCTCTGAGTGGGAC+TGG | 0.523608 | 7.3:-17483314 | MS.gene04619:CDS |
| CCATCACCCTCACTCTTGGC+TGG | 0.525576 | 7.3:-17483611 | MS.gene04619:CDS |
| CGAGAGAACCAGTGTTGGAA+TGG | 0.526614 | 7.3:+17483730 | None:intergenic |
| CTTAAAACAGTGAGGTGGAA+TGG | 0.530569 | 7.3:+17484046 | None:intergenic |
| TGGGCTTTACCATCTTGCCA+TGG | 0.531736 | 7.3:-17483448 | MS.gene04619:CDS |
| TACCATCTTGCCATGGCCAA+AGG | 0.532398 | 7.3:-17483441 | MS.gene04619:CDS |
| ATGCATTCAGTGACTATCAA+TGG | 0.532817 | 7.3:-17483833 | MS.gene04619:CDS |
| TGGCTCTCAATGTTTCAGGC+AGG | 0.534597 | 7.3:-17483578 | MS.gene04619:CDS |
| CACCGGTAAGAATGCAACCT+TGG | 0.536943 | 7.3:+17483886 | None:intergenic |
| GGCCATGCCAAGAAAGAGAG+AGG | 0.537304 | 7.3:+17483924 | None:intergenic |
| CCGAAGGAGGAACAGAGGTT+CGG | 0.538906 | 7.3:+17484147 | None:intergenic |
| TGGTGAGGACTCTGCCTAGT+GGG | 0.542219 | 7.3:+17483637 | None:intergenic |
| ATCTATGTTGAGCCAGATCA+AGG | 0.542641 | 7.3:-17483072 | MS.gene04619:CDS |
| TATTCTGGTACAACAATAAG+TGG | 0.543399 | 7.3:-17483032 | MS.gene04619:CDS |
| TCTGAGTGGGACTGGTTGAG+AGG | 0.543952 | 7.3:-17483306 | MS.gene04619:CDS |
| CCTGCCTACTGGGCTATCCA+AGG | 0.546166 | 7.3:-17483903 | MS.gene04619:CDS |
| CCTTGGATAGCCCAGTAGGC+AGG | 0.549828 | 7.3:+17483903 | None:intergenic |
| TTTGGAGTACCAATAGATGC+TGG | 0.551082 | 7.3:+17483674 | None:intergenic |
| CGCCGCCACCATTCCAACAC+TGG | 0.559519 | 7.3:-17483738 | MS.gene04619:CDS |
| TTCTCTGACTTCCTAGCCGA+AGG | 0.561382 | 7.3:+17484131 | None:intergenic |
| GCCATGCCAAGAAAGAGAGA+GGG | 0.562344 | 7.3:+17483925 | None:intergenic |
| CAAATGGCACCCGTTTCACA+GGG | 0.563114 | 7.3:+17484105 | None:intergenic |
| GACCTTTGGCCATGGCAAGA+TGG | 0.564496 | 7.3:+17483439 | None:intergenic |
| AGCTTTGGCAACCGTTGACA+GGG | 0.565749 | 7.3:-17483283 | MS.gene04619:CDS |
| CATGAGTGTCTGTAATATTG+TGG | 0.568101 | 7.3:+17483235 | None:intergenic |
| AACCAGTGTTGGAATGGTGG+CGG | 0.568578 | 7.3:+17483736 | None:intergenic |
| CAATGGCTTGATGACACAGT+TGG | 0.569230 | 7.3:-17483816 | MS.gene04619:CDS |
| ACATTACGATTCCTCTGAGT+GGG | 0.573964 | 7.3:-17483319 | MS.gene04619:CDS |
| AAGAGTGAGGGTGATGGTAA+TGG | 0.577915 | 7.3:+17483617 | None:intergenic |
| GAGAACCAGTGTTGGAATGG+TGG | 0.578252 | 7.3:+17483733 | None:intergenic |
| GTAATAGAGGAAGAAGGCTA+TGG | 0.580245 | 7.3:+17483980 | None:intergenic |
| CCTCTGTTCCTCCTTCGGCT+AGG | 0.582186 | 7.3:-17484142 | MS.gene04619:CDS |
| TGGGTCATTGCACATGAGTG+TGG | 0.585000 | 7.3:-17483861 | MS.gene04619:CDS |
| GCCTCCATTGCATGATAATG+TGG | 0.587261 | 7.3:+17483186 | None:intergenic |
| CCAGAATACACCCTTTCTCT+CGG | 0.587954 | 7.3:+17483047 | None:intergenic |
| TCATGCAATGGAGGCTACCA+AGG | 0.589000 | 7.3:-17483178 | MS.gene04619:CDS |
| CCTCTCGAGAGAACCAGTGT+TGG | 0.591079 | 7.3:+17483725 | None:intergenic |
| GCTTGCCACTTTAACCCACA+TGG | 0.593012 | 7.3:-17483540 | MS.gene04619:CDS |
| CCAGGTAAGACCTTTGGCCA+TGG | 0.599714 | 7.3:+17483431 | None:intergenic |
| CAACACTGGTTCTCTCGAGA+GGG | 0.601058 | 7.3:-17483724 | MS.gene04619:CDS |
| ATGGTGAGGACTCTGCCTAG+TGG | 0.601259 | 7.3:+17483636 | None:intergenic |
| CATGGCCAAAGGTCTTACCT+GGG | 0.604062 | 7.3:-17483430 | MS.gene04619:CDS |
| AAAGGGGCCAGCCAAGAGTG+AGG | 0.608169 | 7.3:+17483604 | None:intergenic |
| GCAACCTTGGATAGCCCAGT+AGG | 0.609261 | 7.3:+17483899 | None:intergenic |
| GGTGAGGTCATAAACAACAT+AGG | 0.610689 | 7.3:+17484001 | None:intergenic |
| CCAGCCAAGAGTGAGGGTGA+TGG | 0.614753 | 7.3:+17483611 | None:intergenic |
| GATCAAGGTACCGAGAGAAA+GGG | 0.616655 | 7.3:-17483057 | MS.gene04619:CDS |
| TCTGACTTCCTAGCCGAAGG+AGG | 0.619871 | 7.3:+17484134 | None:intergenic |
| CACTCAGAGGAATCGTAATG+TGG | 0.622937 | 7.3:+17483321 | None:intergenic |
| AATCCATTGACTACAAGCAG+TGG | 0.623001 | 7.3:+17483387 | None:intergenic |
| CCAACACTGGTTCTCTCGAG+AGG | 0.624813 | 7.3:-17483725 | MS.gene04619:CDS |
| TCCATAAACACACACAACCC+AGG | 0.628038 | 7.3:+17483413 | None:intergenic |
| AAGGGGCCAGCCAAGAGTGA+GGG | 0.628897 | 7.3:+17483605 | None:intergenic |
| GGCAACGTAATAGAGGAAGA+AGG | 0.631803 | 7.3:+17483974 | None:intergenic |
| AATGCCACATTATCATGCAA+TGG | 0.633031 | 7.3:-17483190 | MS.gene04619:CDS |
| GCCACATTATCATGCAATGG+AGG | 0.633822 | 7.3:-17483187 | MS.gene04619:CDS |
| TCTGAGTAAATGGGACCATG+TGG | 0.642110 | 7.3:+17483525 | None:intergenic |
| TACCTTAGCAACAACCCACT+AGG | 0.642926 | 7.3:-17483651 | MS.gene04619:CDS |
| TTGCTGAAGATGGGAGCTGG+TGG | 0.643245 | 7.3:-17484170 | None:intergenic |
| CACATTACGATTCCTCTGAG+TGG | 0.649598 | 7.3:-17483320 | MS.gene04619:CDS |
| ATTGATAGTCACTGAATGCA+TGG | 0.657583 | 7.3:+17483835 | None:intergenic |
| GAGCGCTTAAAACAGTGAGG+TGG | 0.659884 | 7.3:+17484041 | None:intergenic |
| CTGAGTAAATGGGACCATGT+GGG | 0.661466 | 7.3:+17483526 | None:intergenic |
| ACATTGAGAGCCAAGTAAAG+GGG | 0.661648 | 7.3:+17483588 | None:intergenic |
| ATGTGCAATGACCCAAACAC+CGG | 0.662992 | 7.3:+17483869 | None:intergenic |
| CAATATTACAGACACTCATG+TGG | 0.663012 | 7.3:-17483232 | MS.gene04619:CDS |
| TGCATGATAATGTGGCATTG+TGG | 0.668075 | 7.3:+17483194 | None:intergenic |
| TCTCAACCAGTCCCACTCAG+AGG | 0.673811 | 7.3:+17483308 | None:intergenic |
| GATTCCGTAATCCCTGTCAA+CGG | 0.680193 | 7.3:+17483272 | None:intergenic |
| TGAGGGTGATGGTAATGGTG+AGG | 0.680817 | 7.3:+17483622 | None:intergenic |
| GGATTACGGAATCCTGAACA+AGG | 0.686478 | 7.3:-17483262 | MS.gene04619:CDS |
| AGAGGAAGAAGGCTATGGTG+AGG | 0.694680 | 7.3:+17483985 | None:intergenic |
| AAGGTGCTGGAAGTAATAGG+TGG | 0.697490 | 7.3:+17483953 | None:intergenic |
| CCTAGCCGAAGGAGGAACAG+AGG | 0.707032 | 7.3:+17484142 | None:intergenic |
| AAGGCACAAGAAGAGCAGAG+TGG | 0.708399 | 7.3:+17483784 | None:intergenic |
| ATCTGGCTGAGACTAAATGG+AGG | 0.708633 | 7.3:+17484077 | None:intergenic |
| ACAGAGCGCTTAAAACAGTG+AGG | 0.748360 | 7.3:+17484038 | None:intergenic |
| GATAGTCACTGAATGCATGG+TGG | 0.772836 | 7.3:+17483838 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGCAATAAAACCAATTTT+GGG | - | chr7.3:17484031-17484050 | MS.gene04619:CDS | 25.0% |
| !!! | CAATTTTGGGAGATTATTAT+CGG | - | chr7.3:17484044-17484063 | MS.gene04619:CDS | 25.0% |
| AAACAACATAGGAGAATGAA+TGG | + | chr7.3:17483181-17483200 | None:intergenic | 30.0% | |
| CAAATATATGTATCAGATGC+AGG | - | chr7.3:17483701-17483720 | MS.gene04619:CDS | 30.0% | |
| CGATAATAATCTCCCAAAAT+TGG | + | chr7.3:17484046-17484065 | None:intergenic | 30.0% | |
| CTGTATTTCCATGAAAAGTA+AGG | + | chr7.3:17483428-17483447 | None:intergenic | 30.0% | |
| TATTCTGGTACAACAATAAG+TGG | - | chr7.3:17484158-17484177 | MS.gene04619:CDS | 30.0% | |
| ! | CAAGGCAATAAAACCAATTT+TGG | - | chr7.3:17484030-17484049 | MS.gene04619:CDS | 30.0% |
| !!! | CAAAATTGGTTTTATTGCCT+TGG | + | chr7.3:17484032-17484051 | None:intergenic | 30.0% |
| AAACATTGAGAGCCAAGTAA+AGG | + | chr7.3:17483607-17483626 | None:intergenic | 35.0% | |
| AACATTGAGAGCCAAGTAAA+GGG | + | chr7.3:17483606-17483625 | None:intergenic | 35.0% | |
| AATGCCACATTATCATGCAA+TGG | - | chr7.3:17484000-17484019 | MS.gene04619:CDS | 35.0% | |
| ATGCATTCAGTGACTATCAA+TGG | - | chr7.3:17483357-17483376 | MS.gene04619:CDS | 35.0% | |
| CAATATTACAGACACTCATG+TGG | - | chr7.3:17483958-17483977 | MS.gene04619:CDS | 35.0% | |
| CATGAGTGTCTGTAATATTG+TGG | + | chr7.3:17483958-17483977 | None:intergenic | 35.0% | |
| CTCCATAATGCCTTGTAAAA+TGG | + | chr7.3:17484082-17484101 | None:intergenic | 35.0% | |
| TGGCAAGCAAATCTATCATA+AGG | + | chr7.3:17483638-17483657 | None:intergenic | 35.0% | |
| TTTGGGAGATTATTATCGGT+TGG | - | chr7.3:17484048-17484067 | MS.gene04619:CDS | 35.0% | |
| ! | ATTGATAGTCACTGAATGCA+TGG | + | chr7.3:17483358-17483377 | None:intergenic | 35.0% |
| ! | CTAAATGGAGGCTTTTCAAA+TGG | + | chr7.3:17483104-17483123 | None:intergenic | 35.0% |
| ! | GGATGAAACACCATTTTACA+AGG | - | chr7.3:17484069-17484088 | MS.gene04619:CDS | 35.0% |
| !! | CACCATTTTACAAGGCATTA+TGG | - | chr7.3:17484077-17484096 | MS.gene04619:CDS | 35.0% |
| !! | TTCTTGTGCCTTACTTTTCA+TGG | - | chr7.3:17483417-17483436 | MS.gene04619:CDS | 35.0% |
| AACAGAAGTCCAGCATCTAT+TGG | - | chr7.3:17483507-17483526 | MS.gene04619:CDS | 40.0% | |
| AATAGGTGGCAACGTAATAG+AGG | + | chr7.3:17483226-17483245 | None:intergenic | 40.0% | |
| ACATTACGATTCCTCTGAGT+GGG | - | chr7.3:17483871-17483890 | MS.gene04619:CDS | 40.0% | |
| ACATTGAGAGCCAAGTAAAG+GGG | + | chr7.3:17483605-17483624 | None:intergenic | 40.0% | |
| ACGTTCACGATCTGAGTAAA+TGG | + | chr7.3:17483678-17483697 | None:intergenic | 40.0% | |
| ATAGATGCTGGACTTCTGTT+TGG | + | chr7.3:17483507-17483526 | None:intergenic | 40.0% | |
| ATCCAAGGTTGCATTCTTAC+CGG | - | chr7.3:17483302-17483321 | MS.gene04619:CDS | 40.0% | |
| ATCTATGTTGAGCCAGATCA+AGG | - | chr7.3:17484118-17484137 | MS.gene04619:CDS | 40.0% | |
| CGTTCACGATCTGAGTAAAT+GGG | + | chr7.3:17483677-17483696 | None:intergenic | 40.0% | |
| CTTAAAACAGTGAGGTGGAA+TGG | + | chr7.3:17483147-17483166 | None:intergenic | 40.0% | |
| GAATACTTGCAGTGTGCTTT+GGG | - | chr7.3:17483723-17483742 | MS.gene04619:CDS | 40.0% | |
| GGTGAGGTCATAAACAACAT+AGG | + | chr7.3:17483192-17483211 | None:intergenic | 40.0% | |
| GTAATAGAGGAAGAAGGCTA+TGG | + | chr7.3:17483213-17483232 | None:intergenic | 40.0% | |
| TAGATGCTGGACTTCTGTTT+GGG | + | chr7.3:17483506-17483525 | None:intergenic | 40.0% | |
| TATTGTGGAAGACCTTGTTC+AGG | + | chr7.3:17483943-17483962 | None:intergenic | 40.0% | |
| TTGATCTGGCTGAGACTAAA+TGG | + | chr7.3:17483119-17483138 | None:intergenic | 40.0% | |
| TTGCATTCTTACCGGTGTTT+GGG | - | chr7.3:17483310-17483329 | MS.gene04619:CDS | 40.0% | |
| ! | AATCCATTGACTACAAGCAG+TGG | + | chr7.3:17483806-17483825 | None:intergenic | 40.0% |
| ! | ATTTTTGCAGCATACTCACC+CGG | - | chr7.3:17483841-17483860 | MS.gene04619:CDS | 40.0% |
| ! | GCTTGTAGTCAATGGATTCT+TGG | - | chr7.3:17483808-17483827 | MS.gene04619:CDS | 40.0% |
| ! | TACTTGGCTCTCAATGTTTC+AGG | - | chr7.3:17483608-17483627 | MS.gene04619:CDS | 40.0% |
| ! | TGCATGATAATGTGGCATTG+TGG | + | chr7.3:17483999-17484018 | None:intergenic | 40.0% |
| ! | TGGGTTGTTGCTAAGGTATT+TGG | + | chr7.3:17483537-17483556 | None:intergenic | 40.0% |
| ! | TTTGGAGTACCAATAGATGC+TGG | + | chr7.3:17483519-17483538 | None:intergenic | 40.0% |
| AATCGTAATGTGGCAATGCC+GGG | + | chr7.3:17483862-17483881 | None:intergenic | 45.0% | |
| ACCTGGGTTGTGTGTGTTTA+TGG | - | chr7.3:17483776-17483795 | MS.gene04619:CDS | 45.0% | |
| AGAGAATGACCCTGTGAAAC+GGG | - | chr7.3:17483076-17483095 | MS.gene04619:CDS | 45.0% | |
| ATCTGGCTGAGACTAAATGG+AGG | + | chr7.3:17483116-17483135 | None:intergenic | 45.0% | |
| ATGTGCAATGACCCAAACAC+CGG | + | chr7.3:17483324-17483343 | None:intergenic | 45.0% | |
| ATTACCATCACCCTCACTCT+TGG | - | chr7.3:17483575-17483594 | MS.gene04619:CDS | 45.0% | |
| CACATTACGATTCCTCTGAG+TGG | - | chr7.3:17483870-17483889 | MS.gene04619:CDS | 45.0% | |
| CACTCAGAGGAATCGTAATG+TGG | + | chr7.3:17483872-17483891 | None:intergenic | 45.0% | |
| CAGAGAATGACCCTGTGAAA+CGG | - | chr7.3:17483075-17483094 | MS.gene04619:CDS | 45.0% | |
| CCAGAATACACCCTTTCTCT+CGG | + | chr7.3:17484146-17484165 | None:intergenic | 45.0% | |
| CTGAGTAAATGGGACCATGT+GGG | + | chr7.3:17483667-17483686 | None:intergenic | 45.0% | |
| GAAGAGCAGAGTGGAGAATA+AGG | + | chr7.3:17483400-17483419 | None:intergenic | 45.0% | |
| GAATCGTAATGTGGCAATGC+CGG | + | chr7.3:17483863-17483882 | None:intergenic | 45.0% | |
| GATAGTCACTGAATGCATGG+TGG | + | chr7.3:17483355-17483374 | None:intergenic | 45.0% | |
| GATTCCGTAATCCCTGTCAA+CGG | + | chr7.3:17483921-17483940 | None:intergenic | 45.0% | |
| GCCACATTATCATGCAATGG+AGG | - | chr7.3:17484003-17484022 | MS.gene04619:CDS | 45.0% | |
| GGAATACTTGCAGTGTGCTT+TGG | - | chr7.3:17483722-17483741 | MS.gene04619:CDS | 45.0% | |
| GGATTACGGAATCCTGAACA+AGG | - | chr7.3:17483928-17483947 | MS.gene04619:CDS | 45.0% | |
| GGCAACGTAATAGAGGAAGA+AGG | + | chr7.3:17483219-17483238 | None:intergenic | 45.0% | |
| GTGGAATGGCTTTCTTGATC+TGG | + | chr7.3:17483133-17483152 | None:intergenic | 45.0% | |
| GTTCCACTGCTTGTAGTCAA+TGG | - | chr7.3:17483800-17483819 | MS.gene04619:CDS | 45.0% | |
| GTTGCATTCTTACCGGTGTT+TGG | - | chr7.3:17483309-17483328 | MS.gene04619:CDS | 45.0% | |
| TACCTTAGCAACAACCCACT+AGG | - | chr7.3:17483539-17483558 | MS.gene04619:CDS | 45.0% | |
| TCCATAAACACACACAACCC+AGG | + | chr7.3:17483780-17483799 | None:intergenic | 45.0% | |
| TCTGAGTAAATGGGACCATG+TGG | + | chr7.3:17483668-17483687 | None:intergenic | 45.0% | |
| TTTCTCTCGGTACCTTGATC+TGG | + | chr7.3:17484133-17484152 | None:intergenic | 45.0% | |
| ! | AAGAGTGAGGGTGATGGTAA+TGG | + | chr7.3:17483576-17483595 | None:intergenic | 45.0% |
| ! | ACAGAGCGCTTAAAACAGTG+AGG | + | chr7.3:17483155-17483174 | None:intergenic | 45.0% |
| ! | CAATGGCTTGATGACACAGT+TGG | - | chr7.3:17483374-17483393 | MS.gene04619:CDS | 45.0% |
| ! | GCCTCCATTGCATGATAATG+TGG | + | chr7.3:17484007-17484026 | None:intergenic | 45.0% |
| !! | AAGGTGCTGGAAGTAATAGG+TGG | + | chr7.3:17483240-17483259 | None:intergenic | 45.0% |
| !! | AGATCAAGGTACCGAGAGAA+AGG | - | chr7.3:17484132-17484151 | MS.gene04619:CDS | 45.0% |
| !! | AGGAAGGTGCTGGAAGTAAT+AGG | + | chr7.3:17483243-17483262 | None:intergenic | 45.0% |
| !! | GATCAAGGTACCGAGAGAAA+GGG | - | chr7.3:17484133-17484152 | MS.gene04619:CDS | 45.0% |
| AAGGCACAAGAAGAGCAGAG+TGG | + | chr7.3:17483409-17483428 | None:intergenic | 50.0% | |
| AGAGGAAGAAGGCTATGGTG+AGG | + | chr7.3:17483208-17483227 | None:intergenic | 50.0% | |
| CAAATGGCACCCGTTTCACA+GGG | + | chr7.3:17483088-17483107 | None:intergenic | 50.0% | |
| CACAACCCAGGTAAGACCTT+TGG | + | chr7.3:17483768-17483787 | None:intergenic | 50.0% | |
| CACCGGTAAGAATGCAACCT+TGG | + | chr7.3:17483307-17483326 | None:intergenic | 50.0% | |
| CATGGCCAAAGGTCTTACCT+GGG | - | chr7.3:17483760-17483779 | MS.gene04619:CDS | 50.0% | |
| GAGCGCTTAAAACAGTGAGG+TGG | + | chr7.3:17483152-17483171 | None:intergenic | 50.0% | |
| GCAACCGTTGACAGGGATTA+CGG | - | chr7.3:17483914-17483933 | MS.gene04619:CDS | 50.0% | |
| GCCATGCCAAGAAAGAGAGA+GGG | + | chr7.3:17483268-17483287 | None:intergenic | 50.0% | |
| TACCATCTTGCCATGGCCAA+AGG | - | chr7.3:17483749-17483768 | MS.gene04619:CDS | 50.0% | |
| TCAAATGGCACCCGTTTCAC+AGG | + | chr7.3:17483089-17483108 | None:intergenic | 50.0% | |
| TCATGCAATGGAGGCTACCA+AGG | - | chr7.3:17484012-17484031 | MS.gene04619:CDS | 50.0% | |
| TGGCTCTCAATGTTTCAGGC+AGG | - | chr7.3:17483612-17483631 | MS.gene04619:CDS | 50.0% | |
| TGGGCTTTACCATCTTGCCA+TGG | - | chr7.3:17483742-17483761 | MS.gene04619:CDS | 50.0% | |
| TGGGTCATTGCACATGAGTG+TGG | - | chr7.3:17483329-17483348 | MS.gene04619:CDS | 50.0% | |
| TTCTCTGACTTCCTAGCCGA+AGG | + | chr7.3:17483062-17483081 | None:intergenic | 50.0% | |
| ! | AACCAGTGTTGGAATGGTGG+CGG | + | chr7.3:17483457-17483476 | None:intergenic | 50.0% |
| ! | AGCTTTGGCAACCGTTGACA+GGG | - | chr7.3:17483907-17483926 | MS.gene04619:CDS | 50.0% |
| ! | CCGAGAGAAAGGGTGTATTC+TGG | - | chr7.3:17484143-17484162 | MS.gene04619:CDS | 50.0% |
| ! | CGAGAGAACCAGTGTTGGAA+TGG | + | chr7.3:17483463-17483482 | None:intergenic | 50.0% |
| ! | GAGAACCAGTGTTGGAATGG+TGG | + | chr7.3:17483460-17483479 | None:intergenic | 50.0% |
| ! | TGGGACCATGTGGGTTAAAG+TGG | + | chr7.3:17483658-17483677 | None:intergenic | 50.0% |
| !! | CAACACTGGTTCTCTCGAGA+GGG | - | chr7.3:17483466-17483485 | MS.gene04619:CDS | 50.0% |
| !! | GCTTGCCACTTTAACCCACA+TGG | - | chr7.3:17483650-17483669 | MS.gene04619:CDS | 50.0% |
| !! | TGAGGGTGATGGTAATGGTG+AGG | + | chr7.3:17483571-17483590 | None:intergenic | 50.0% |
| !! | TGCCTAGTGGGTTGTTGCTA+AGG | + | chr7.3:17483544-17483563 | None:intergenic | 50.0% |
| ACGATTCCTCTGAGTGGGAC+TGG | - | chr7.3:17483876-17483895 | MS.gene04619:CDS | 55.0% | |
| AGAAAGAGAGAGGGCGAGGA+AGG | + | chr7.3:17483259-17483278 | None:intergenic | 55.0% | |
| ATGGTGAGGACTCTGCCTAG+TGG | + | chr7.3:17483557-17483576 | None:intergenic | 55.0% | |
| CCAGGTAAGACCTTTGGCCA+TGG | + | chr7.3:17483762-17483781 | None:intergenic | 55.0% | |
| CCATGGCCAAAGGTCTTACC+TGG | - | chr7.3:17483759-17483778 | MS.gene04619:CDS | 55.0% | |
| CCGAACCTCTGTTCCTCCTT+CGG | - | chr7.3:17483043-17483062 | MS.gene04619:CDS | 55.0% | |
| CCGAAGGAGGAACAGAGGTT+CGG | + | chr7.3:17483046-17483065 | None:intergenic | 55.0% | |
| CCTCTCGAGAGAACCAGTGT+TGG | + | chr7.3:17483468-17483487 | None:intergenic | 55.0% | |
| GACCTTTGGCCATGGCAAGA+TGG | + | chr7.3:17483754-17483773 | None:intergenic | 55.0% | |
| GCAACCTTGGATAGCCCAGT+AGG | + | chr7.3:17483294-17483313 | None:intergenic | 55.0% | |
| GCCCTCTCTCTTTCTTGGCA+TGG | - | chr7.3:17483264-17483283 | MS.gene04619:CDS | 55.0% | |
| GGCCATGCCAAGAAAGAGAG+AGG | + | chr7.3:17483269-17483288 | None:intergenic | 55.0% | |
| TCCTCGCCCTCTCTCTTTCT+TGG | - | chr7.3:17483259-17483278 | MS.gene04619:CDS | 55.0% | |
| TCTCAACCAGTCCCACTCAG+AGG | + | chr7.3:17483885-17483904 | None:intergenic | 55.0% | |
| TCTGACTTCCTAGCCGAAGG+AGG | + | chr7.3:17483059-17483078 | None:intergenic | 55.0% | |
| TGGTGAGGACTCTGCCTAGT+GGG | + | chr7.3:17483556-17483575 | None:intergenic | 55.0% | |
| ! | GAGCTTTGGCAACCGTTGAC+AGG | - | chr7.3:17483906-17483925 | MS.gene04619:CDS | 55.0% |
| ! | TCTTGGCTGGCCCCTTTACT+TGG | - | chr7.3:17483592-17483611 | MS.gene04619:CDS | 55.0% |
| !! | CCAACACTGGTTCTCTCGAG+AGG | - | chr7.3:17483465-17483484 | MS.gene04619:CDS | 55.0% |
| !! | GGACTGGTTGAGAGGAGCTT+TGG | - | chr7.3:17483892-17483911 | MS.gene04619:CDS | 55.0% |
| !! | TCTGAGTGGGACTGGTTGAG+AGG | - | chr7.3:17483884-17483903 | MS.gene04619:CDS | 55.0% |
| AAAGGGGCCAGCCAAGAGTG+AGG | + | chr7.3:17483589-17483608 | None:intergenic | 60.0% | |
| AAGGGGCCAGCCAAGAGTGA+GGG | + | chr7.3:17483588-17483607 | None:intergenic | 60.0% | |
| CCAGCCAAGAGTGAGGGTGA+TGG | + | chr7.3:17483582-17483601 | None:intergenic | 60.0% | |
| CCATCACCCTCACTCTTGGC+TGG | - | chr7.3:17483579-17483598 | MS.gene04619:CDS | 60.0% | |
| CCTAGCCGAAGGAGGAACAG+AGG | + | chr7.3:17483051-17483070 | None:intergenic | 60.0% | |
| CCTCTGTTCCTCCTTCGGCT+AGG | - | chr7.3:17483048-17483067 | MS.gene04619:CDS | 60.0% | |
| CCTGCCTACTGGGCTATCCA+AGG | - | chr7.3:17483287-17483306 | MS.gene04619:CDS | 60.0% | |
| CCTTGGATAGCCCAGTAGGC+AGG | + | chr7.3:17483290-17483309 | None:intergenic | 60.0% | |
| CTTGGCATGGCCTGCCTACT+GGG | - | chr7.3:17483277-17483296 | MS.gene04619:CDS | 60.0% | |
| GCCAAGAAAGAGAGAGGGCG+AGG | + | chr7.3:17483263-17483282 | None:intergenic | 60.0% | |
| TCTTGGCATGGCCTGCCTAC+TGG | - | chr7.3:17483276-17483295 | MS.gene04619:CDS | 60.0% | |
| !! | TGTTGGAATGGTGGCGGCGA+TGG | + | chr7.3:17483451-17483470 | None:intergenic | 60.0% |
| CGCCGCCACCATTCCAACAC+TGG | - | chr7.3:17483452-17483471 | MS.gene04619:CDS | 65.0% | |
| ! | AGAGAGGGCGAGGAAGGTGC+TGG | + | chr7.3:17483253-17483272 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 17483029 | 17484183 | 17483029 | ID=MS.gene04619 |
| chr7.3 | mRNA | 17483029 | 17484183 | 17483029 | ID=MS.gene04619.t1;Parent=MS.gene04619 |
| chr7.3 | exon | 17483029 | 17484183 | 17483029 | ID=MS.gene04619.t1.exon1;Parent=MS.gene04619.t1 |
| chr7.3 | CDS | 17483029 | 17484183 | 17483029 | ID=cds.MS.gene04619.t1;Parent=MS.gene04619.t1 |
| Gene Sequence |
| Protein sequence |
