AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04728

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04728.t1 MTR_6g087040 84.325 504 79 0 1 504 1 504 0.0 890
MS.gene04728.t1 MTR_6g088375 84.325 504 79 0 1 504 1 504 0.0 890
MS.gene04728.t1 MTR_8g102860 76.316 494 117 0 13 506 13 506 0.0 794
MS.gene04728.t1 MTR_8g102860 75.551 454 111 0 53 506 1 454 0.0 722
MS.gene04728.t1 MTR_0204s0020 58.859 491 198 3 8 497 3 490 0.0 611
MS.gene04728.t1 MTR_0204s0020 58.452 491 197 4 8 497 3 487 0.0 601
MS.gene04728.t1 MTR_5g094760 57.002 507 213 4 1 505 1 504 0.0 601
MS.gene04728.t1 MTR_7g091690 58.233 498 203 4 1 496 1 495 0.0 597
MS.gene04728.t1 MTR_0204s0040 55.888 501 214 4 2 501 8 502 0.0 594
MS.gene04728.t1 MTR_4g116770 55.888 501 214 4 2 501 204 698 0.0 592
MS.gene04728.t1 MTR_4g116790 55.010 509 222 5 3 510 6 508 0.0 577
MS.gene04728.t1 MTR_5g006070 55.847 496 213 6 18 509 14 507 0.0 570
MS.gene04728.t1 MTR_3g008160 53.909 486 221 3 18 501 15 499 0.0 535
MS.gene04728.t1 MTR_1g038630 53.488 516 227 6 1 508 1 511 0.0 532
MS.gene04728.t1 MTR_5g006070 55.098 461 201 6 53 509 1 459 0.0 524
MS.gene04728.t1 MTR_1g104780 54.455 505 221 7 1 501 1 500 0.0 520
MS.gene04728.t1 MTR_1g104750 50.000 502 244 5 1 499 1 498 9.39e-180 514
MS.gene04728.t1 MTR_5g082540 52.361 487 227 4 18 501 15 499 1.16e-179 514
MS.gene04728.t1 MTR_1g104770 49.901 503 244 6 1 499 1 499 4.01e-179 513
MS.gene04728.t1 MTR_4g091370 54.582 491 218 3 18 504 15 504 9.45e-177 507
MS.gene04728.t1 MTR_0009s0370 50.098 509 248 4 7 510 2 509 3.09e-175 503
MS.gene04728.t1 MTR_3g008170 50.101 493 242 4 21 510 18 509 8.59e-175 502
MS.gene04728.t1 MTR_3g008160 53.437 451 207 3 53 501 1 450 4.60e-172 493
MS.gene04728.t1 MTR_3g023480 50.000 510 245 5 10 512 5 511 7.69e-172 494
MS.gene04728.t1 MTR_5g041550 51.683 505 233 6 1 499 1 500 3.11e-171 493
MS.gene04728.t1 MTR_3g093010 50.484 517 246 6 1 512 1 512 7.37e-170 489
MS.gene04728.t1 MTR_1g038600 50.874 515 224 7 1 508 1 493 7.62e-170 489
MS.gene04728.t1 MTR_3g074410 47.151 509 261 8 1 505 1 505 3.63e-162 470
MS.gene04728.t1 MTR_3g074390 48.479 493 245 8 21 509 23 510 4.30e-161 467
MS.gene04728.t1 MTR_4g090600 50.784 510 237 6 9 509 10 514 1.74e-157 458
MS.gene04728.t1 MTR_3g074270 47.705 501 235 7 1 499 1 476 2.36e-157 457
MS.gene04728.t1 MTR_3g007910 47.348 509 228 7 1 505 1 473 2.75e-156 454
MS.gene04728.t1 MTR_4g116790 55.068 365 158 4 3 366 6 365 4.53e-148 429
MS.gene04728.t1 MTR_3g093060 47.788 452 229 4 53 498 1 451 1.10e-144 423
MS.gene04728.t1 MTR_3g074380 47.967 369 187 5 1 367 1 366 1.21e-110 333
MS.gene04728.t1 MTR_3g074340 45.048 313 166 6 191 499 20 330 2.56e-92 285
MS.gene04728.t1 MTR_3g074370 45.048 313 166 6 191 499 20 330 2.79e-92 285
MS.gene04728.t1 MTR_3g074320 45.048 313 166 6 191 499 20 330 3.86e-92 285
MS.gene04728.t1 MTR_3g074400 36.923 455 222 11 53 480 1 417 4.03e-82 261
MS.gene04728.t1 MTR_6g088450 28.630 489 297 13 8 478 45 499 6.17e-58 201
MS.gene04728.t1 MTR_8g103500 27.423 485 310 10 21 489 13 471 2.58e-54 191
MS.gene04728.t1 MTR_4g072030 28.346 508 312 13 28 510 26 506 1.15e-53 189
MS.gene04728.t1 MTR_3g084110 29.102 512 328 13 10 509 7 495 9.28e-52 184
MS.gene04728.t1 MTR_4g069500 26.096 502 330 9 26 507 29 509 3.01e-51 182
MS.gene04728.t1 MTR_4g069500 27.009 448 307 6 79 507 13 459 4.34e-50 178
MS.gene04728.t1 MTR_6g018790 31.291 457 282 10 32 485 111 538 4.32e-49 177
MS.gene04728.t1 MTR_1g116660 28.425 489 320 12 25 506 34 499 5.70e-49 176
MS.gene04728.t1 MTR_7g005910 28.870 478 306 12 25 493 32 484 7.56e-49 176
MS.gene04728.t1 MTR_7g082270 29.011 455 295 8 32 485 71 498 6.78e-48 173
MS.gene04728.t1 MTR_8g077890 28.600 493 301 12 26 492 18 485 8.94e-48 173
MS.gene04728.t1 MTR_7g446340 27.160 486 302 13 25 492 54 505 8.06e-47 171
MS.gene04728.t1 MTR_6g007340 27.160 486 302 13 25 492 54 505 8.06e-47 171
MS.gene04728.t1 MTR_1g116650 28.687 495 308 11 25 511 77 534 8.10e-47 171
MS.gene04728.t1 MTR_5g075300 27.823 496 310 10 21 492 14 485 1.00e-46 170
MS.gene04728.t1 MTR_3g116240 27.515 487 300 12 26 485 27 487 1.57e-45 167
MS.gene04728.t1 MTR_2g013310 25.996 477 316 12 26 491 52 502 3.15e-44 164
MS.gene04728.t1 MTR_7g082270 29.723 397 252 7 32 428 71 440 1.04e-43 161
MS.gene04728.t1 MTR_4g077740 28.298 470 293 12 34 485 53 496 2.68e-43 160
MS.gene04728.t1 MTR_4g013205 29.188 394 262 7 96 485 88 468 3.84e-43 160
MS.gene04728.t1 MTR_2g013310 27.179 390 270 8 111 491 45 429 6.87e-43 158
MS.gene04728.t1 MTR_5g096000 44.385 187 81 2 1 187 1 164 2.44e-41 150
MS.gene04728.t1 MTR_5g096000 51.938 129 62 0 377 505 176 304 1.59e-33 129
MS.gene04728.t1 MTR_2g049020 29.942 344 215 6 35 371 35 359 3.63e-40 153
MS.gene04728.t1 MTR_1g038620 46.541 159 67 2 206 364 50 190 6.02e-40 143
MS.gene04728.t1 MTR_3g074330 51.235 162 68 3 1 155 1 158 2.96e-39 141
MS.gene04728.t1 MTR_3g074360 51.235 162 68 3 1 155 1 158 2.96e-39 141
MS.gene04728.t1 MTR_2g026160 30.814 344 203 8 25 355 26 347 3.41e-39 150
MS.gene04728.t1 MTR_6g087910 27.665 394 268 7 94 485 104 482 8.93e-39 148
MS.gene04728.t1 MTR_2g048720 31.595 326 198 7 35 355 35 340 9.77e-39 149
MS.gene04728.t1 MTR_5g077580 27.531 563 281 18 35 501 35 566 1.00e-38 149
MS.gene04728.t1 MTR_3g074310 50.617 162 69 3 1 155 1 158 1.59e-38 139
MS.gene04728.t1 MTR_8g077310 25.486 463 312 8 27 485 48 481 1.74e-36 141
MS.gene04728.t1 MTR_7g113970 26.988 415 277 10 86 492 102 498 3.39e-36 140
MS.gene04728.t1 MTR_7g113960 27.340 406 271 9 86 485 67 454 6.25e-36 140
MS.gene04728.t1 MTR_1g022315 27.073 410 285 7 86 490 89 489 9.44e-36 139
MS.gene04728.t1 MTR_5g019870 28.798 441 277 12 81 492 50 482 1.41e-35 139
MS.gene04728.t1 MTR_8g077310 26.650 394 274 8 97 485 1 384 1.51e-35 137
MS.gene04728.t1 MTR_8g077300 27.340 406 278 7 86 485 79 473 2.38e-35 138
MS.gene04728.t1 MTR_1g022315 27.436 390 269 7 106 490 10 390 3.31e-35 136
MS.gene04728.t1 MTR_5g020270 25.845 414 284 8 86 490 90 489 6.61e-35 137
MS.gene04728.t1 MTR_3g080240 26.329 395 274 10 96 485 145 527 1.37e-34 137
MS.gene04728.t1 MTR_5g020270 26.478 389 263 8 111 490 15 389 1.76e-34 134
MS.gene04728.t1 MTR_7g094450 26.366 421 288 6 67 485 69 469 2.68e-34 135
MS.gene04728.t1 MTR_4g118610 29.782 413 255 12 86 485 92 482 5.10e-33 131
MS.gene04728.t1 MTR_4g064820 29.915 351 212 8 34 366 104 438 1.50e-32 130
MS.gene04728.t1 MTR_2g020710 27.027 407 272 10 87 485 1 390 6.25e-31 124
MS.gene04728.t1 MTR_2g020710 26.961 408 273 10 86 485 89 479 6.94e-31 125
MS.gene04728.t1 MTR_0064s0040 42.029 138 68 1 18 155 16 141 2.41e-30 116
MS.gene04728.t1 MTR_5g020270 25.183 409 272 9 86 490 90 468 1.41e-29 121
MS.gene04728.t1 MTR_2g026140 27.221 349 207 9 36 371 34 348 1.50e-29 122
MS.gene04728.t1 MTR_7g094110 26.353 425 283 9 67 485 71 471 1.84e-29 121
MS.gene04728.t1 MTR_4g069500 24.611 321 223 5 205 507 1 320 3.98e-29 117
MS.gene04728.t1 MTR_7g113960 29.091 275 177 6 86 355 67 328 2.08e-25 108
MS.gene04728.t1 MTR_8g077310 26.962 293 199 6 86 376 87 366 3.12e-25 108
MS.gene04728.t1 MTR_3g116060 35.057 174 111 2 91 263 50 222 5.08e-24 106
MS.gene04728.t1 MTR_7g113970 28.179 291 186 9 86 368 102 377 1.13e-23 103
MS.gene04728.t1 MTR_7g094110 24.764 424 271 9 67 485 71 451 1.14e-22 101
MS.gene04728.t1 MTR_1g114280 36.364 154 77 3 350 501 21 155 3.02e-22 93.6
MS.gene04728.t1 MTR_5g024740 28.571 238 149 5 27 262 5 223 3.09e-22 100
MS.gene04728.t1 MTR_3g118530 34.503 171 111 1 94 263 54 224 1.34e-21 99.0
MS.gene04728.t1 MTR_3g118530 34.503 171 111 1 94 263 54 224 1.87e-21 98.6
MS.gene04728.t1 MTR_8g073100 27.572 243 160 5 79 306 39 280 7.04e-21 96.7
MS.gene04728.t1 MTR_4g118610 28.779 344 210 12 86 416 92 413 1.06e-20 95.1
MS.gene04728.t1 MTR_5g044910 29.379 177 124 1 87 262 47 223 1.46e-20 95.9
MS.gene04728.t1 MTR_2g020710 25.740 338 226 10 86 415 89 409 2.57e-20 93.6
MS.gene04728.t1 MTR_2g020710 25.664 339 227 10 86 416 89 410 2.60e-20 93.6
MS.gene04728.t1 MTR_2g020710 27.018 285 187 8 86 363 89 359 1.33e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04728.t1 AT1G77210 73.016 504 136 0 1 504 1 504 0.0 777
MS.gene04728.t1 AT1G77210 73.016 504 136 0 1 504 1 504 0.0 777
MS.gene04728.t1 AT4G02050 59.649 513 201 5 1 510 1 510 0.0 624
MS.gene04728.t1 AT4G02050 59.649 513 201 5 1 510 1 510 0.0 624
MS.gene04728.t1 AT5G26340 55.750 513 219 6 1 509 1 509 0.0 572
MS.gene04728.t1 AT3G19940 51.717 495 231 3 22 509 21 514 0.0 548
MS.gene04728.t1 AT1G11260 52.751 527 227 7 1 511 1 521 0.0 538
MS.gene04728.t1 AT1G50310 53.002 483 223 3 22 501 21 502 0.0 538
MS.gene04728.t1 AT1G77210 72.000 350 98 0 155 504 6 355 0.0 533
MS.gene04728.t1 AT3G19930 52.277 505 231 6 1 501 1 499 0.0 524
MS.gene04728.t1 AT3G19930 52.277 505 231 6 1 501 1 499 0.0 524
MS.gene04728.t1 AT5G23270 52.569 506 225 7 1 498 1 499 0.0 520
MS.gene04728.t1 AT4G21480 52.165 485 227 4 18 499 15 497 3.08e-174 500
MS.gene04728.t1 AT5G26250 49.901 503 244 5 10 510 9 505 7.58e-174 499
MS.gene04728.t1 AT3G05960 50.103 487 240 3 14 499 9 493 1.01e-170 491
MS.gene04728.t1 AT5G61520 47.791 498 251 5 21 511 19 514 7.25e-158 459
MS.gene04728.t1 AT1G34580 45.562 507 260 9 1 498 1 500 1.41e-149 437
MS.gene04728.t1 AT1G07340 46.901 484 251 6 21 501 18 498 4.32e-148 434
MS.gene04728.t1 AT5G61520 47.109 467 238 5 52 511 2 466 2.71e-143 420
MS.gene04728.t1 AT1G34580 45.175 456 236 8 53 499 1 451 1.28e-133 395
MS.gene04728.t1 AT1G50310 51.429 350 166 3 155 501 11 359 1.73e-127 376
MS.gene04728.t1 AT4G36670 30.137 511 300 13 26 512 16 493 3.89e-58 201
MS.gene04728.t1 AT2G18480 30.655 473 280 11 40 489 36 483 1.07e-57 200
MS.gene04728.t1 AT3G18830 28.429 503 317 11 26 506 35 516 1.21e-57 200
MS.gene04728.t1 AT2G16130 29.448 489 302 10 26 492 25 492 3.96e-56 196
MS.gene04728.t1 AT2G16120 28.600 507 315 11 26 510 25 506 1.70e-55 194
MS.gene04728.t1 AT5G17010 30.550 491 299 12 12 485 33 498 8.34e-48 173
MS.gene04728.t1 AT5G17010 30.550 491 299 12 12 485 33 498 8.34e-48 173
MS.gene04728.t1 AT5G17010 30.550 491 299 12 12 485 33 498 8.34e-48 173
MS.gene04728.t1 AT5G16150 30.297 472 297 9 19 487 98 540 9.37e-47 171
MS.gene04728.t1 AT5G16150 30.297 472 297 9 19 487 98 540 9.37e-47 171
MS.gene04728.t1 AT5G16150 30.297 472 297 9 19 487 98 540 9.37e-47 171
MS.gene04728.t1 AT5G59250 28.937 508 309 13 3 485 72 552 1.25e-46 171
MS.gene04728.t1 AT2G43330 28.838 482 308 11 25 498 30 484 1.21e-45 167
MS.gene04728.t1 AT3G03090 29.060 468 292 10 34 485 55 498 1.58e-43 161
MS.gene04728.t1 AT2G20780 27.168 519 320 16 11 511 40 518 1.80e-43 161
MS.gene04728.t1 AT2G20780 28.381 451 285 15 79 511 30 460 2.27e-42 157
MS.gene04728.t1 AT2G35740 26.821 563 288 16 25 490 25 560 3.82e-42 159
MS.gene04728.t1 AT4G16480 32.055 365 211 9 23 373 24 365 7.57e-42 158
MS.gene04728.t1 AT4G16480 32.055 365 211 9 23 373 24 365 7.57e-42 158
MS.gene04728.t1 AT4G16480 32.055 365 211 9 23 373 24 365 7.57e-42 158
MS.gene04728.t1 AT1G08930 28.571 427 255 11 86 492 98 494 9.97e-41 153
MS.gene04728.t1 AT1G08930 28.571 427 255 11 86 492 98 494 9.97e-41 153
MS.gene04728.t1 AT1G67300 28.141 398 264 8 96 485 103 486 6.41e-40 151
MS.gene04728.t1 AT1G67300 28.852 357 236 8 96 448 103 445 6.63e-40 150
MS.gene04728.t1 AT1G67300 28.852 357 236 8 96 448 103 445 6.63e-40 150
MS.gene04728.t1 AT1G08900 29.484 407 263 9 86 485 23 412 3.13e-39 148
MS.gene04728.t1 AT3G05400 28.434 415 269 11 86 491 66 461 3.62e-39 148
MS.gene04728.t1 AT1G08900 29.484 407 263 9 86 485 65 454 5.90e-39 148
MS.gene04728.t1 AT1G08900 29.484 407 263 9 86 485 65 454 5.90e-39 148
MS.gene04728.t1 AT1G08900 29.484 407 263 9 86 485 57 446 6.13e-39 147
MS.gene04728.t1 AT1G67300 28.392 398 262 9 96 485 103 485 1.20e-38 147
MS.gene04728.t1 AT1G67300 28.392 398 262 9 96 485 103 485 1.20e-38 147
MS.gene04728.t1 AT1G67300 28.869 336 223 7 96 427 103 426 2.42e-38 145
MS.gene04728.t1 AT1G67300 28.869 336 223 7 96 427 103 426 2.42e-38 145
MS.gene04728.t1 AT1G79820 27.250 400 280 5 87 485 97 486 2.45e-38 147
MS.gene04728.t1 AT1G79820 27.250 400 280 5 87 485 97 486 2.45e-38 147
MS.gene04728.t1 AT3G05155 27.423 423 284 10 71 485 47 454 2.96e-38 146
MS.gene04728.t1 AT1G54730 27.093 454 298 8 34 485 39 461 3.49e-38 146
MS.gene04728.t1 AT3G05400 29.847 392 237 13 119 491 69 441 8.70e-38 144
MS.gene04728.t1 AT1G08890 29.310 406 265 9 86 485 67 456 1.25e-37 144
MS.gene04728.t1 AT1G30220 28.746 327 209 7 35 355 37 345 1.28e-37 146
MS.gene04728.t1 AT5G27360 27.061 473 303 9 19 485 28 464 3.83e-37 143
MS.gene04728.t1 AT1G79820 27.507 349 243 4 87 435 97 435 5.40e-37 142
MS.gene04728.t1 AT5G27350 28.041 485 283 12 19 485 24 460 7.28e-37 142
MS.gene04728.t1 AT5G27360 27.521 476 297 10 19 485 76 512 8.72e-37 143
MS.gene04728.t1 AT1G05030 29.426 401 260 12 95 487 78 463 5.60e-36 140
MS.gene04728.t1 AT1G05030 28.475 446 296 12 50 487 85 515 6.67e-36 140
MS.gene04728.t1 AT2G48020 26.601 406 276 6 86 485 68 457 1.32e-35 139
MS.gene04728.t1 AT2G48020 26.601 406 276 6 86 485 68 457 1.32e-35 139
MS.gene04728.t1 AT1G75220 27.007 411 283 7 86 490 88 487 2.74e-35 138
MS.gene04728.t1 AT4G04760 27.966 472 303 10 26 492 31 470 8.27e-35 136
MS.gene04728.t1 AT4G04760 28.605 430 282 8 68 492 2 411 1.25e-34 135
MS.gene04728.t1 AT4G04750 28.467 411 274 8 86 492 80 474 3.01e-34 135
MS.gene04728.t1 AT4G04750 28.467 411 274 8 86 492 80 474 3.01e-34 135
MS.gene04728.t1 AT4G04750 28.467 411 274 8 86 492 124 518 3.43e-34 135
MS.gene04728.t1 AT5G27360 29.132 357 231 8 135 485 20 360 4.77e-34 132
MS.gene04728.t1 AT5G27360 29.132 357 231 8 135 485 20 360 4.77e-34 132
MS.gene04728.t1 AT5G18840 27.792 403 276 7 86 485 84 474 1.57e-33 133
MS.gene04728.t1 AT1G54730 26.585 410 268 8 34 441 39 417 2.15e-33 132
MS.gene04728.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.12e-33 132
MS.gene04728.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.12e-33 132
MS.gene04728.t1 AT3G05150 27.696 408 270 9 86 485 75 465 3.30e-33 132
MS.gene04728.t1 AT1G19450 27.251 411 282 7 86 490 89 488 3.68e-33 132
MS.gene04728.t1 AT3G05160 27.907 430 269 12 73 485 45 450 5.42e-33 131
MS.gene04728.t1 AT1G54730 26.652 454 279 9 34 485 39 440 6.23e-33 130
MS.gene04728.t1 AT3G05165 26.555 418 290 8 73 485 54 459 9.54e-33 130
MS.gene04728.t1 AT3G05165 26.555 418 290 8 73 485 54 459 9.54e-33 130
MS.gene04728.t1 AT3G05165 26.555 418 290 8 73 485 54 459 9.54e-33 130
MS.gene04728.t1 AT1G08920 26.456 412 269 10 86 485 72 461 1.06e-32 130
MS.gene04728.t1 AT3G05160 27.913 412 259 11 88 485 14 401 1.65e-32 129
MS.gene04728.t1 AT3G05160 27.913 412 259 11 88 485 14 401 1.65e-32 129
MS.gene04728.t1 AT1G08920 26.014 419 269 10 86 485 72 468 1.17e-31 127
MS.gene04728.t1 AT1G08900 28.729 362 234 9 86 440 65 409 1.52e-31 126
MS.gene04728.t1 AT4G04760 27.893 484 283 13 26 491 31 466 7.48e-30 122
MS.gene04728.t1 AT1G08920 26.087 368 238 10 86 441 72 417 3.70e-28 117
MS.gene04728.t1 AT1G54730 26.098 410 249 9 34 441 39 396 5.19e-28 116
MS.gene04728.t1 AT3G05165 26.519 362 249 8 73 429 54 403 1.72e-27 115
MS.gene04728.t1 AT3G05165 26.519 362 249 8 73 429 54 403 1.99e-27 115
MS.gene04728.t1 AT3G05165 26.519 362 249 8 73 429 54 403 1.99e-27 115
MS.gene04728.t1 AT1G54730 26.234 385 251 8 34 416 39 392 2.28e-27 114
MS.gene04728.t1 AT1G54730 26.234 385 251 8 34 416 39 392 2.28e-27 114
MS.gene04728.t1 AT3G51490 30.252 238 147 5 27 263 5 224 3.70e-26 113
MS.gene04728.t1 AT3G51490 30.252 238 147 5 27 263 5 224 4.37e-26 112
MS.gene04728.t1 AT1G54730 27.469 324 204 7 34 355 39 333 5.12e-26 109
MS.gene04728.t1 AT3G51490 35.057 174 111 2 91 263 2 174 8.57e-26 112
MS.gene04728.t1 AT1G79820 25.000 400 241 6 87 485 97 438 8.79e-26 110
MS.gene04728.t1 AT3G20460 26.634 413 267 11 86 485 93 482 1.20e-25 110
MS.gene04728.t1 AT5G17010 26.598 485 266 13 12 485 30 435 3.62e-25 108
MS.gene04728.t1 AT5G27360 25.908 413 258 10 19 422 28 401 1.46e-24 106
MS.gene04728.t1 AT3G05155 26.838 272 184 7 86 355 67 325 4.18e-24 103
MS.gene04728.t1 AT1G54730 26.101 318 204 6 32 348 38 325 1.13e-23 102
MS.gene04728.t1 AT1G54730 26.101 318 204 6 32 348 38 325 1.13e-23 102
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.11e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene04728.t1 AT4G35300 35.632 174 110 2 91 263 52 224 2.49e-23 104
MS.gene04728.t1 AT2G48020 26.552 290 192 6 86 368 68 343 1.78e-22 99.8
MS.gene04728.t1 AT1G54730 25.714 385 232 9 34 416 39 371 4.78e-22 98.6
MS.gene04728.t1 AT2G48020 26.812 276 182 5 86 355 68 329 1.51e-21 96.7
MS.gene04728.t1 AT1G79820 25.691 362 206 7 127 485 75 376 1.54e-20 94.0
MS.gene04728.t1 AT1G20840 31.609 174 117 2 91 263 50 222 1.30e-19 92.8
MS.gene04728.t1 AT1G20840 31.609 174 117 2 91 263 50 222 1.30e-19 92.8

Find 103 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACTTGTTTGGGAATTT+TGG 0.090341 4.2:+2512555 MS.gene04728:CDS
GGATATGATCTTGGTGTTTC+AGG 0.160402 4.2:+2511841 MS.gene04728:CDS
GTAAGAAGATTCCATATTTA+AGG 0.160996 4.2:-2513582 None:intergenic
AACATTTATATGTTGATTAT+TGG 0.183002 4.2:+2512319 MS.gene04728:CDS
ATGGGAACTTGCTTTGTTTC+CGG 0.216465 4.2:-2513655 None:intergenic
CCAGCCATTGTTATGTTTAT+TGG 0.229033 4.2:+2512655 MS.gene04728:CDS
CTTTCAACTAACAACTTGTT+TGG 0.236475 4.2:+2512546 MS.gene04728:CDS
GCTCTTGGTGGCTCTCTCTT+TGG 0.250070 4.2:+2511820 MS.gene04728:CDS
ATTATTGGTCGTATCCTTCT+TGG 0.256145 4.2:+2512334 MS.gene04728:CDS
AATAGACCACAATTTGTAAT+TGG 0.260406 4.2:+2512862 MS.gene04728:CDS
GGTAGCTGCAGCAATTGTTT+TGG 0.266994 4.2:+2513327 MS.gene04728:intron
ATCCTTCTTGGCGTTGGAAT+TGG 0.286559 4.2:+2512346 MS.gene04728:CDS
GCAGCTGATCTTATCTCTAA+TGG 0.287553 4.2:-2513484 None:intergenic
AGACATTTCTGACAGATATA+AGG 0.298674 4.2:-2512491 None:intergenic
AATATGGCAGGTGGAGGATT+TGG 0.298867 4.2:+2511718 None:intergenic
TTTCATATTCTTTCTATTGC+CGG 0.305191 4.2:+2513636 MS.gene04728:CDS
TCACTCTGCCACCTTAAATA+TGG 0.307877 4.2:+2513571 MS.gene04728:CDS
GGAAGAGGCAAGAAAGGTTT+TGG 0.315780 4.2:+2512729 MS.gene04728:CDS
TGTTGAGAGAAGCAGCATTT+AGG 0.323015 4.2:-2512300 None:intergenic
TGTTTCCTCTCATACACATT+TGG 0.323425 4.2:-2512100 None:intergenic
TCTTGCATTGTTGGTGCTCT+TGG 0.323511 4.2:+2511805 MS.gene04728:CDS
CTTTATGAATACAAGATTAC+AGG 0.324011 4.2:+2511769 MS.gene04728:CDS
TGCAGGTGGAGTTACTTCTA+TGG 0.329077 4.2:+2512054 MS.gene04728:intron
TCTTCGAGAACCATTGGTTT+TGG 0.329646 4.2:+2513695 MS.gene04728:CDS
CTTGGCGTTGGAATTGGATT+TGG 0.338067 4.2:+2512352 MS.gene04728:CDS
TTTCTGTTTGTGTTGGGATT+TGG 0.344051 4.2:+2513415 MS.gene04728:CDS
TCTCTCTTTGGATATGATCT+TGG 0.345384 4.2:+2511832 MS.gene04728:CDS
GGTTCCATTAGCTTCTTCAT+TGG 0.349974 4.2:+2512271 MS.gene04728:CDS
CTCAAAAGAAGGTTCTGAAA+TGG 0.355481 4.2:-2512835 None:intergenic
CAGATCCAAATCCAAGAGTT+TGG 0.359984 4.2:-2512957 None:intergenic
TCTTGTGGAACAAGGCAAAA+TGG 0.361228 4.2:+2512708 MS.gene04728:CDS
GTTCTGAAATGGATTCTTGA+TGG 0.368445 4.2:-2512824 None:intergenic
CCTTGTTCCACAAGACTGTT+TGG 0.378394 4.2:-2512700 None:intergenic
TTTCAACTAACAACTTGTTT+GGG 0.390416 4.2:+2512547 MS.gene04728:CDS
GAGAAGATAAATCTCTTCAA+TGG 0.392608 4.2:-2513674 None:intergenic
GTTTCCTCTCATACACATTT+GGG 0.401650 4.2:-2512099 None:intergenic
CCAGTCAGTTGTTGGAATGC+AGG 0.407633 4.2:-2512898 None:intergenic
CAGCTGATCTTATCTCTAAT+GGG 0.408524 4.2:-2513483 None:intergenic
GTCTATTCTTTCTCAAAAGA+AGG 0.410688 4.2:-2512846 None:intergenic
TGTTGGGATTTGGAAGATCA+TGG 0.417917 4.2:+2513425 MS.gene04728:CDS
ACAAGACTGTTTGGTGTCTC+AGG 0.421620 4.2:-2512691 None:intergenic
GCCATTGTTATGTTTATTGG+TGG 0.426591 4.2:+2512658 MS.gene04728:CDS
TGCATTGTTGGTGCTCTTGG+TGG 0.427952 4.2:+2511808 MS.gene04728:CDS
GGAAGATCATGGGGACCCTT+AGG 0.430859 4.2:+2513436 MS.gene04728:CDS
ACAATTTGTAATTGGTGCAT+TGG 0.443499 4.2:+2512870 MS.gene04728:CDS
GACATTTCTGACAGATATAA+GGG 0.447933 4.2:-2512490 None:intergenic
TCAAATTCAGCATCAACATT+AGG 0.452348 4.2:-2512769 None:intergenic
CCAATAAACATAACAATGGC+TGG 0.453467 4.2:-2512655 None:intergenic
AGTTGTTTCCAGTCAGTTGT+TGG 0.455532 4.2:-2512906 None:intergenic
TTGGCTCTTGGGTTTGGTGA+TGG 0.456861 4.2:+2513346 MS.gene04728:CDS
AATGGAACCAACAACAATAC+TGG 0.458027 4.2:-2512257 None:intergenic
ATCTTCTCTTCGAGAACCAT+TGG 0.465257 4.2:+2513689 MS.gene04728:CDS
ATGGGGACCCTTAGGATGGT+TGG 0.470449 4.2:+2513444 MS.gene04728:CDS
GTGATGGTGGAAATCTCAAA+AGG 0.475636 4.2:+2511740 MS.gene04728:CDS
GGTGGAGGATTTGGTGATGG+TGG 0.478295 4.2:+2511727 MS.gene04728:CDS
CAAATCCAAGAGTTTGGAAA+AGG 0.479549 4.2:-2512951 None:intergenic
AGAAGATAAATCTCTTCAAT+GGG 0.487469 4.2:-2513673 None:intergenic
GATGGCAAACAATTATCATT+TGG 0.489457 4.2:+2513364 MS.gene04728:CDS
TGGGGATGGAGATTATCTCT+TGG 0.491578 4.2:+2512619 MS.gene04728:CDS
AGGAGAGCCAGTATTGTTGT+TGG 0.495148 4.2:+2512250 MS.gene04728:CDS
CAAAATGGAAGAGGCAAGAA+AGG 0.497536 4.2:+2512723 MS.gene04728:CDS
ACTTGGAACCAACCATCCTA+AGG 0.498385 4.2:-2513452 None:intergenic
GGTCGTATCCTTCTTGGCGT+TGG 0.503190 4.2:+2512340 MS.gene04728:CDS
AGCTCCAATGAAGAAGCTAA+TGG 0.508387 4.2:-2512275 None:intergenic
TCTAATGGGAAAAGCTCACT+TGG 0.515398 4.2:-2513469 None:intergenic
CGACCGAGCAAATTCATCCA+TGG 0.518915 4.2:+2512599 MS.gene04728:CDS
AGCAAATTCATCCATGGGGA+TGG 0.524714 4.2:+2512605 MS.gene04728:CDS
GACCGAGCAAATTCATCCAT+GGG 0.526464 4.2:+2512600 MS.gene04728:CDS
TGAGAGGAAACATGCACACT+TGG 0.539485 4.2:+2512111 MS.gene04728:CDS
GCAGGTGGAGGATTTGGTGA+TGG 0.542926 4.2:+2511724 MS.gene04728:CDS
TGGAAGAGATATGTAGCAGA+TGG 0.545839 4.2:+2513715 MS.gene04728:CDS
TCCCCATGGATGAATTTGCT+CGG 0.552523 4.2:-2512602 None:intergenic
CCAAGAGTTTGGAAAAGGAC+AGG 0.554540 4.2:-2512946 None:intergenic
CCTGCATTCCAACAACTGAC+TGG 0.555304 4.2:+2512898 MS.gene04728:CDS
TGCTGAAATGTTCTTGTGCA+TGG 0.555889 4.2:+2513092 MS.gene04728:CDS
GTTGGGATTTGGAAGATCAT+GGG 0.557591 4.2:+2513426 MS.gene04728:CDS
TTTATGTTGACAAGTTTGGT+AGG 0.561260 4.2:+2513046 MS.gene04728:CDS
ATCCAATTCCAACGCCAAGA+AGG 0.564783 4.2:-2512348 None:intergenic
CCAAACAGTCTTGTGGAACA+AGG 0.569116 4.2:+2512700 MS.gene04728:CDS
AATGCACCAATTACAAATTG+TGG 0.579575 4.2:-2512868 None:intergenic
GGAACAAGGCAAAATGGAAG+AGG 0.584145 4.2:+2512714 MS.gene04728:CDS
AAGGAAGAATTGTGCAACAA+TGG 0.584788 4.2:-2513545 None:intergenic
TCTTCCCAAATGTGTATGAG+AGG 0.590383 4.2:+2512095 MS.gene04728:CDS
GACAGGTGCATAGAAGAGGA+TGG 0.591217 4.2:-2512929 None:intergenic
CATATCTCTTCCAAAACCAA+TGG 0.592289 4.2:-2513705 None:intergenic
AGAAGATTCCATATTTAAGG+TGG 0.599343 4.2:-2513579 None:intergenic
TGGAATTGGATTTGGTAACC+AGG 0.602717 4.2:+2512360 MS.gene04728:CDS
GATCATGGGGACCCTTAGGA+TGG 0.603621 4.2:+2513440 MS.gene04728:CDS
AAAGGACAGGTGCATAGAAG+AGG 0.607711 4.2:-2512933 None:intergenic
TGATGGTGGAAATCTCAAAA+GGG 0.610629 4.2:+2511741 MS.gene04728:CDS
GGCAGCAAAGTATAGAGATG+AGG 0.611582 4.2:-2512182 None:intergenic
ACCACCAATAAACATAACAA+TGG 0.611653 4.2:-2512659 None:intergenic
TGAGACACCAAACAGTCTTG+TGG 0.611935 4.2:+2512693 MS.gene04728:CDS
TTGGGATTTGGAAGATCATG+GGG 0.614895 4.2:+2513427 MS.gene04728:CDS
AAGTTGTTAGTTGAAAGAGT+TGG 0.626985 4.2:-2512540 None:intergenic
CTTGGAACCAACCATCCTAA+GGG 0.630263 4.2:-2513451 None:intergenic
TTTATGAATACAAGATTACA+GGG 0.630488 4.2:+2511770 MS.gene04728:CDS
AGAGATAATCTCCATCCCCA+TGG 0.639595 4.2:-2512616 None:intergenic
ATGTCTCCTGCAAAAGTGAG+AGG 0.640100 4.2:+2512508 MS.gene04728:CDS
TAAGGTGGCAGAGTGATACA+AGG 0.640798 4.2:-2513564 None:intergenic
ATAAAACATTGAGATCAAAG+TGG 0.656717 4.2:-2513028 None:intergenic
ATCAGCTGCACAAAGTGTTG+TGG 0.674434 4.2:+2513498 MS.gene04728:CDS
ACCGAGCAAATTCATCCATG+GGG 0.697187 4.2:+2512601 MS.gene04728:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAGAAGAAAAAAAAGA+TGG - chr4.2:2513129-2513148 None:intergenic 15.0%
!!! AACATTTATATGTTGATTAT+TGG + chr4.2:2512319-2512338 MS.gene04728:CDS 15.0%
!!! TTTTGAAACATTATTTAAGT+AGG - chr4.2:2513156-2513175 None:intergenic 15.0%
!! AGAAAATCCATATTTGTTTA+AGG - chr4.2:2511974-2511993 None:intergenic 20.0%
!! CTTAAATAATGTTTCAAAAC+TGG + chr4.2:2513157-2513176 MS.gene04728:intron 20.0%
!! TTTATGAATACAAGATTACA+GGG + chr4.2:2511770-2511789 MS.gene04728:CDS 20.0%
!!! ACTTCTTGTTGTTATTATTT+AGG + chr4.2:2512462-2512481 MS.gene04728:intron 20.0%
!!! GGTTGAAATATATTTTTTCA+AGG + chr4.2:2513251-2513270 MS.gene04728:intron 20.0%
!!! GTTATGTTTGGTAATTTATT+AGG - chr4.2:2511920-2511939 None:intergenic 20.0%
!!! TGAAATATATTTTTTCAAGG+CGG + chr4.2:2513254-2513273 MS.gene04728:intron 20.0%
! AAACATAACATACCAATGTT+TGG + chr4.2:2511931-2511950 MS.gene04728:intron 25.0%
! AAACATTGGTATGTTATGTT+TGG - chr4.2:2511932-2511951 None:intergenic 25.0%
! AATAGACCACAATTTGTAAT+TGG + chr4.2:2512862-2512881 MS.gene04728:CDS 25.0%
! AATTAATTGATTATCCTTGC+AGG + chr4.2:2512037-2512056 MS.gene04728:intron 25.0%
! AGAAGATAAATCTCTTCAAT+GGG - chr4.2:2513676-2513695 None:intergenic 25.0%
! AGGATAATCAATTAATTGTC+AGG - chr4.2:2512034-2512053 None:intergenic 25.0%
! ATAAAACATTGAGATCAAAG+TGG - chr4.2:2513031-2513050 None:intergenic 25.0%
! CTTTATGAATACAAGATTAC+AGG + chr4.2:2511769-2511788 MS.gene04728:CDS 25.0%
! GGATAATCAATTAATTGTCA+GGG - chr4.2:2512033-2512052 None:intergenic 25.0%
! GTAAGAAGATTCCATATTTA+AGG - chr4.2:2513585-2513604 None:intergenic 25.0%
! GTCTTCACTCAAATTTAATT+GGG - chr4.2:2512000-2512019 None:intergenic 25.0%
! TTTCATATTCTTTCTATTGC+CGG + chr4.2:2513636-2513655 MS.gene04728:CDS 25.0%
!! ATGTTTTATGTTGACAAGTT+TGG + chr4.2:2513042-2513061 MS.gene04728:CDS 25.0%
!! TTTCAACTAACAACTTGTTT+GGG + chr4.2:2512547-2512566 MS.gene04728:CDS 25.0%
!!! GAAATATATTTTTTCAAGGC+GGG + chr4.2:2513255-2513274 MS.gene04728:intron 25.0%
AAGTTGTTAGTTGAAAGAGT+TGG - chr4.2:2512543-2512562 None:intergenic 30.0%
AATGCACCAATTACAAATTG+TGG - chr4.2:2512871-2512890 None:intergenic 30.0%
ACAATTTGTAATTGGTGCAT+TGG + chr4.2:2512870-2512889 MS.gene04728:CDS 30.0%
ACCACCAATAAACATAACAA+TGG - chr4.2:2512662-2512681 None:intergenic 30.0%
AGAAGATTCCATATTTAAGG+TGG - chr4.2:2513582-2513601 None:intergenic 30.0%
AGACATTTCTGACAGATATA+AGG - chr4.2:2512494-2512513 None:intergenic 30.0%
CCATAACAAAAAACAAAGGT+AGG + chr4.2:2512230-2512249 MS.gene04728:CDS 30.0%
GACATTTCTGACAGATATAA+GGG - chr4.2:2512493-2512512 None:intergenic 30.0%
GAGAAGATAAATCTCTTCAA+TGG - chr4.2:2513677-2513696 None:intergenic 30.0%
GATGGCAAACAATTATCATT+TGG + chr4.2:2513364-2513383 MS.gene04728:CDS 30.0%
GGTCTTCACTCAAATTTAAT+TGG - chr4.2:2512001-2512020 None:intergenic 30.0%
GTCTATTCTTTCTCAAAAGA+AGG - chr4.2:2512849-2512868 None:intergenic 30.0%
TAATTGTCAGGGACTAATTT+AGG - chr4.2:2512022-2512041 None:intergenic 30.0%
TCAAATTCAGCATCAACATT+AGG - chr4.2:2512772-2512791 None:intergenic 30.0%
TCCTCCATAACAAAAAACAA+AGG + chr4.2:2512226-2512245 MS.gene04728:CDS 30.0%
TTTATGTTGACAAGTTTGGT+AGG + chr4.2:2513046-2513065 MS.gene04728:CDS 30.0%
! CTTTCAACTAACAACTTGTT+TGG + chr4.2:2512546-2512565 MS.gene04728:CDS 30.0%
! GTGATTTTTCTGTTTGTGTT+GGG + chr4.2:2513409-2513428 MS.gene04728:CDS 30.0%
! TGTGATTTTTCTGTTTGTGT+TGG + chr4.2:2513408-2513427 MS.gene04728:CDS 30.0%
! TTCATCTTTTCTTGCATTGT+TGG + chr4.2:2511796-2511815 MS.gene04728:CDS 30.0%
!! AACAACTTGTTTGGGAATTT+TGG + chr4.2:2512555-2512574 MS.gene04728:CDS 30.0%
!! AATGTTTGGTGTAAGAAACT+CGG + chr4.2:2511945-2511964 MS.gene04728:intron 30.0%
!!! ACCTTTGTTTTTTGTTATGG+AGG - chr4.2:2512230-2512249 None:intergenic 30.0%
!!! CCTACCTTTGTTTTTTGTTA+TGG - chr4.2:2512233-2512252 None:intergenic 30.0%
AAGGAAGAATTGTGCAACAA+TGG - chr4.2:2513548-2513567 None:intergenic 35.0%
AATGGAACCAACAACAATAC+TGG - chr4.2:2512260-2512279 None:intergenic 35.0%
ATTATTGGTCGTATCCTTCT+TGG + chr4.2:2512334-2512353 MS.gene04728:CDS 35.0%
CAAATCCAAGAGTTTGGAAA+AGG - chr4.2:2512954-2512973 None:intergenic 35.0%
CAGCTGATCTTATCTCTAAT+GGG - chr4.2:2513486-2513505 None:intergenic 35.0%
CATATCTCTTCCAAAACCAA+TGG - chr4.2:2513708-2513727 None:intergenic 35.0%
CCAATAAACATAACAATGGC+TGG - chr4.2:2512658-2512677 None:intergenic 35.0%
CCAGCCATTGTTATGTTTAT+TGG + chr4.2:2512655-2512674 MS.gene04728:CDS 35.0%
CCTAGAATCAATTAGTTCAC+CGG + chr4.2:2513199-2513218 MS.gene04728:intron 35.0%
GAGTTTCTTACACCAAACAT+TGG - chr4.2:2511946-2511965 None:intergenic 35.0%
GCCATTGTTATGTTTATTGG+TGG + chr4.2:2512658-2512677 MS.gene04728:CDS 35.0%
GTTTCCTCTCATACACATTT+GGG - chr4.2:2512102-2512121 None:intergenic 35.0%
TAATTGATTATCCTTGCAGG+TGG + chr4.2:2512040-2512059 MS.gene04728:intron 35.0%
TCGGACACCTTAAACAAATA+TGG + chr4.2:2511964-2511983 MS.gene04728:intron 35.0%
TCTCTCTTTGGATATGATCT+TGG + chr4.2:2511832-2511851 MS.gene04728:CDS 35.0%
TGTTTCCTCTCATACACATT+TGG - chr4.2:2512103-2512122 None:intergenic 35.0%
TTTCTGTTTGTGTTGGGATT+TGG + chr4.2:2513415-2513434 MS.gene04728:CDS 35.0%
! AATTGATTCTAGGTCGAACT+TGG - chr4.2:2513192-2513211 None:intergenic 35.0%
! CTTTTCCAAACTCTTGGATT+TGG + chr4.2:2512952-2512971 MS.gene04728:CDS 35.0%
! TTTGAAGCATTCAAGTTACC+TGG - chr4.2:2512381-2512400 None:intergenic 35.0%
!! CTCAAAAGAAGGTTCTGAAA+TGG - chr4.2:2512838-2512857 None:intergenic 35.0%
!! GTTCTGAAATGGATTCTTGA+TGG - chr4.2:2512827-2512846 None:intergenic 35.0%
!! TGATGGTGGAAATCTCAAAA+GGG + chr4.2:2511741-2511760 MS.gene04728:CDS 35.0%
!!! ATGAGACCATTTTGATTTGC+AGG + chr4.2:2513306-2513325 MS.gene04728:intron 35.0%
!!! ATTTGGTGTCAGTGTCTTTT+TGG + chr4.2:2513381-2513400 MS.gene04728:CDS 35.0%
!!! GGAATCTTCTTACTTTTTGC+TGG + chr4.2:2513592-2513611 MS.gene04728:CDS 35.0%
AACCAGACTCCAATGTAATC+GGG - chr4.2:2513235-2513254 None:intergenic 40.0%
AGCTCCAATGAAGAAGCTAA+TGG - chr4.2:2512278-2512297 None:intergenic 40.0%
ATCTTCTCTTCGAGAACCAT+TGG + chr4.2:2513689-2513708 MS.gene04728:CDS 40.0%
CAAAATGGAAGAGGCAAGAA+AGG + chr4.2:2512723-2512742 MS.gene04728:CDS 40.0%
CAACCAGACTCCAATGTAAT+CGG - chr4.2:2513236-2513255 None:intergenic 40.0%
CAGATCCAAATCCAAGAGTT+TGG - chr4.2:2512960-2512979 None:intergenic 40.0%
CAGCTACCTGCAAATCAAAA+TGG - chr4.2:2513315-2513334 None:intergenic 40.0%
CGCGAAAAATGTGGAAATCA+AGG - chr4.2:2512206-2512225 None:intergenic 40.0%
GAATCAATTAGTTCACCGGT+TGG + chr4.2:2513203-2513222 MS.gene04728:intron 40.0%
GCAGCTGATCTTATCTCTAA+TGG - chr4.2:2513487-2513506 None:intergenic 40.0%
GTTGGGATTTGGAAGATCAT+GGG + chr4.2:2513426-2513445 MS.gene04728:CDS 40.0%
TCACTCTGCCACCTTAAATA+TGG + chr4.2:2513571-2513590 MS.gene04728:CDS 40.0%
TCTAATGGGAAAAGCTCACT+TGG - chr4.2:2513472-2513491 None:intergenic 40.0%
TCTTCCCAAATGTGTATGAG+AGG + chr4.2:2512095-2512114 MS.gene04728:CDS 40.0%
TCTTGTGGAACAAGGCAAAA+TGG + chr4.2:2512708-2512727 MS.gene04728:CDS 40.0%
TGCTGAAATGTTCTTGTGCA+TGG + chr4.2:2513092-2513111 MS.gene04728:CDS 40.0%
TGGAAGAGATATGTAGCAGA+TGG + chr4.2:2513715-2513734 MS.gene04728:CDS 40.0%
TGGTTTGATCCCGATTACAT+TGG + chr4.2:2513223-2513242 MS.gene04728:intron 40.0%
TGTTGAGAGAAGCAGCATTT+AGG - chr4.2:2512303-2512322 None:intergenic 40.0%
TGTTGGGATTTGGAAGATCA+TGG + chr4.2:2513425-2513444 MS.gene04728:CDS 40.0%
TTGGGATTTGGAAGATCATG+GGG + chr4.2:2513427-2513446 MS.gene04728:CDS 40.0%
! AGTTGTTTCCAGTCAGTTGT+TGG - chr4.2:2512909-2512928 None:intergenic 40.0%
! CCGGTGAACTAATTGATTCT+AGG - chr4.2:2513202-2513221 None:intergenic 40.0%
! GGTTCCATTAGCTTCTTCAT+TGG + chr4.2:2512271-2512290 MS.gene04728:CDS 40.0%
! TGGAATTGGATTTGGTAACC+AGG + chr4.2:2512360-2512379 MS.gene04728:CDS 40.0%
! TGGTAGGAGAGCTTTCTTTT+TGG + chr4.2:2513062-2513081 MS.gene04728:CDS 40.0%
!! AGAGCTTTCTTTTTGGAAGC+TGG + chr4.2:2513069-2513088 MS.gene04728:CDS 40.0%
!! ATGGGAACTTGCTTTGTTTC+CGG - chr4.2:2513658-2513677 None:intergenic 40.0%
!! GGATATGATCTTGGTGTTTC+AGG + chr4.2:2511841-2511860 MS.gene04728:CDS 40.0%
!! GTGATGGTGGAAATCTCAAA+AGG + chr4.2:2511740-2511759 MS.gene04728:CDS 40.0%
!!! AAGGTTTTGGAGAGAGTTAG+AGG + chr4.2:2512742-2512761 MS.gene04728:CDS 40.0%
!!! ATTGTTTTGGCTCTTGGGTT+TGG + chr4.2:2513340-2513359 MS.gene04728:CDS 40.0%
!!! CAGCAATTGTTTTGGCTCTT+GGG + chr4.2:2513335-2513354 MS.gene04728:CDS 40.0%
!!! GGGAATTTTGGTTGCTAACT+TGG + chr4.2:2512567-2512586 MS.gene04728:CDS 40.0%
!!! TCTTCGAGAACCATTGGTTT+TGG + chr4.2:2513695-2513714 MS.gene04728:CDS 40.0%
AAAGGACAGGTGCATAGAAG+AGG - chr4.2:2512936-2512955 None:intergenic 45.0%
ACCGAGCAAATTCATCCATG+GGG + chr4.2:2512601-2512620 MS.gene04728:CDS 45.0%
ACTTGGAACCAACCATCCTA+AGG - chr4.2:2513455-2513474 None:intergenic 45.0%
AGAGATAATCTCCATCCCCA+TGG - chr4.2:2512619-2512638 None:intergenic 45.0%
AGCAAATTCATCCATGGGGA+TGG + chr4.2:2512605-2512624 MS.gene04728:CDS 45.0%
AGGAGAGCCAGTATTGTTGT+TGG + chr4.2:2512250-2512269 MS.gene04728:CDS 45.0%
ATCCAATTCCAACGCCAAGA+AGG - chr4.2:2512351-2512370 None:intergenic 45.0%
ATCCCGATTACATTGGAGTC+TGG + chr4.2:2513230-2513249 MS.gene04728:intron 45.0%
ATGTCTCCTGCAAAAGTGAG+AGG + chr4.2:2512508-2512527 MS.gene04728:CDS 45.0%
CCAAGAGTTTGGAAAAGGAC+AGG - chr4.2:2512949-2512968 None:intergenic 45.0%
CCTTGTTCCACAAGACTGTT+TGG - chr4.2:2512703-2512722 None:intergenic 45.0%
CTTGGAACCAACCATCCTAA+GGG - chr4.2:2513454-2513473 None:intergenic 45.0%
GACCGAGCAAATTCATCCAT+GGG + chr4.2:2512600-2512619 MS.gene04728:CDS 45.0%
GGAACAAGGCAAAATGGAAG+AGG + chr4.2:2512714-2512733 MS.gene04728:CDS 45.0%
GGCAGCAAAGTATAGAGATG+AGG - chr4.2:2512185-2512204 None:intergenic 45.0%
GTAATCGGGATCAAACCAAC+CGG - chr4.2:2513221-2513240 None:intergenic 45.0%
TAAGGTGGCAGAGTGATACA+AGG - chr4.2:2513567-2513586 None:intergenic 45.0%
TAGAAGTAACTCCACCTGCA+AGG - chr4.2:2512054-2512073 None:intergenic 45.0%
TATGGAGGACGCGAAAAATG+TGG - chr4.2:2512215-2512234 None:intergenic 45.0%
TGAGACACCAAACAGTCTTG+TGG + chr4.2:2512693-2512712 MS.gene04728:CDS 45.0%
TGAGAGGAAACATGCACACT+TGG + chr4.2:2512111-2512130 MS.gene04728:CDS 45.0%
TGCAGGTGGAGTTACTTCTA+TGG + chr4.2:2512054-2512073 MS.gene04728:intron 45.0%
TGGGGATGGAGATTATCTCT+TGG + chr4.2:2512619-2512638 MS.gene04728:CDS 45.0%
! ATCCTTCTTGGCGTTGGAAT+TGG + chr4.2:2512346-2512365 MS.gene04728:CDS 45.0%
! CCAAACAGTCTTGTGGAACA+AGG + chr4.2:2512700-2512719 MS.gene04728:CDS 45.0%
! CCTGTCCTTTTCCAAACTCT+TGG + chr4.2:2512946-2512965 MS.gene04728:CDS 45.0%
! CTAGGTCGAACTTGGTAGTT+CGG - chr4.2:2513184-2513203 None:intergenic 45.0%
! CTTGGCGTTGGAATTGGATT+TGG + chr4.2:2512352-2512371 MS.gene04728:CDS 45.0%
! GGAAGAGGCAAGAAAGGTTT+TGG + chr4.2:2512729-2512748 MS.gene04728:CDS 45.0%
! GGTAGCTGCAGCAATTGTTT+TGG + chr4.2:2513327-2513346 MS.gene04728:intron 45.0%
! TCCCCATGGATGAATTTGCT+CGG - chr4.2:2512605-2512624 None:intergenic 45.0%
! TCTTGCATTGTTGGTGCTCT+TGG + chr4.2:2511805-2511824 MS.gene04728:CDS 45.0%
!! ACAAGACTGTTTGGTGTCTC+AGG - chr4.2:2512694-2512713 None:intergenic 45.0%
!! ATCAGCTGCACAAAGTGTTG+TGG + chr4.2:2513498-2513517 MS.gene04728:CDS 45.0%
!!! GCAGCAATTGTTTTGGCTCT+TGG + chr4.2:2513334-2513353 MS.gene04728:CDS 45.0%
CCAGTCAGTTGTTGGAATGC+AGG - chr4.2:2512901-2512920 None:intergenic 50.0%
CCTGCATTCCAACAACTGAC+TGG + chr4.2:2512898-2512917 MS.gene04728:CDS 50.0%
CGACCGAGCAAATTCATCCA+TGG + chr4.2:2512599-2512618 MS.gene04728:CDS 50.0%
GACAGGTGCATAGAAGAGGA+TGG - chr4.2:2512932-2512951 None:intergenic 50.0%
! TGCATTGTTGGTGCTCTTGG+TGG + chr4.2:2511808-2511827 MS.gene04728:CDS 50.0%
!! ACTGCTCCTCTCACTTTTGC+AGG - chr4.2:2512517-2512536 None:intergenic 50.0%
!! TTGGCTCTTGGGTTTGGTGA+TGG + chr4.2:2513346-2513365 MS.gene04728:CDS 50.0%
ATGGGGACCCTTAGGATGGT+TGG + chr4.2:2513444-2513463 MS.gene04728:CDS 55.0%
GATCATGGGGACCCTTAGGA+TGG + chr4.2:2513440-2513459 MS.gene04728:CDS 55.0%
GGAAGATCATGGGGACCCTT+AGG + chr4.2:2513436-2513455 MS.gene04728:CDS 55.0%
GGTCGTATCCTTCTTGGCGT+TGG + chr4.2:2512340-2512359 MS.gene04728:CDS 55.0%
! GCTCTTGGTGGCTCTCTCTT+TGG + chr4.2:2511820-2511839 MS.gene04728:CDS 55.0%
!! GCAGGTGGAGGATTTGGTGA+TGG + chr4.2:2511724-2511743 MS.gene04728:CDS 55.0%
!! GGTGGAGGATTTGGTGATGG+TGG + chr4.2:2511727-2511746 MS.gene04728:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 2511721 2513771 2511721 ID=MS.gene04728
chr4.2 mRNA 2511721 2513771 2511721 ID=MS.gene04728.t1;Parent=MS.gene04728
chr4.2 exon 2511721 2511862 2511721 ID=MS.gene04728.t1.exon1;Parent=MS.gene04728.t1
chr4.2 CDS 2511721 2511862 2511721 ID=cds.MS.gene04728.t1;Parent=MS.gene04728.t1
chr4.2 exon 2512059 2512381 2512059 ID=MS.gene04728.t1.exon2;Parent=MS.gene04728.t1
chr4.2 CDS 2512059 2512381 2512059 ID=cds.MS.gene04728.t1;Parent=MS.gene04728.t1
chr4.2 exon 2512484 2513113 2512484 ID=MS.gene04728.t1.exon3;Parent=MS.gene04728.t1
chr4.2 CDS 2512484 2513113 2512484 ID=cds.MS.gene04728.t1;Parent=MS.gene04728.t1
chr4.2 exon 2513328 2513771 2513328 ID=MS.gene04728.t1.exon4;Parent=MS.gene04728.t1
chr4.2 CDS 2513328 2513771 2513328 ID=cds.MS.gene04728.t1;Parent=MS.gene04728.t1
Gene Sequence

>MS.gene04728

ATGGCAGGTGGAGGATTTGGTGATGGTGGAAATCTCAAAAGGGCTCATCTTTATGAATACAAGATTACAGGGTACTTCATCTTTTCTTGCATTGTTGGTGCTCTTGGTGGCTCTCTCTTTGGATATGATCTTGGTGTTTCAGGTGAGAGTGAATGTTTTATCAATTGTCAATTCTCACATTGTCATATAAATATTACCTAATAAATTACCAAACATAACATACCAATGTTTGGTGTAAGAAACTCGGACACCTTAAACAAATATGGATTTTCTCGTCCCAATTAAATTTGAGTGAAGACCTAAATTAGTCCCTGACAATTAATTGATTATCCTTGCAGGTGGAGTTACTTCTATGGATGATTTCTTGAAAGAATTCTTCCCAAATGTGTATGAGAGGAAACATGCACACTTGGCAGAAACAGATTATTGTAAATATGATGATCAAATGTTGACACTTTTCACCTCATCTCTATACTTTGCTGCCTTGATTTCCACATTTTTCGCGTCCTCCATAACAAAAAACAAAGGTAGGAGAGCCAGTATTGTTGTTGGTTCCATTAGCTTCTTCATTGGAGCTGTCCTAAATGCTGCTTCTCTCAACATTTATATGTTGATTATTGGTCGTATCCTTCTTGGCGTTGGAATTGGATTTGGTAACCAGGTAACTTGAATGCTTCAAAATGATAAATAATGAGTTTATGTCAATACACACACACACACACACGTGTGTGTTATAAACTAACTTCTTGTTGTTATTATTTAGGCTGTTCCCTTATATCTGTCAGAAATGTCTCCTGCAAAAGTGAGAGGAGCAGTGAACCAACTCTTTCAACTAACAACTTGTTTGGGAATTTTGGTTGCTAACTTGGTAAATTATGCGACCGAGCAAATTCATCCATGGGGATGGAGATTATCTCTTGGTTTAGCAGTAGTTCCAGCCATTGTTATGTTTATTGGTGGTTTGTTGTGTCCTGAGACACCAAACAGTCTTGTGGAACAAGGCAAAATGGAAGAGGCAAGAAAGGTTTTGGAGAGAGTTAGAGGTACGCCTAATGTTGATGCTGAATTTGAAGATCTTGTTGAAGCAAGCAGAGAAGCACAAGCCATCAAGAATCCATTTCAGAACCTTCTTTTGAGAAAGAATAGACCACAATTTGTAATTGGTGCATTGGCTATTCCTGCATTCCAACAACTGACTGGAAACAACTCCATCCTCTTCTATGCACCTGTCCTTTTCCAAACTCTTGGATTTGGATCTGCTGCATCTCTTTATTCTTCTGTCATCACTAGTATTGCACTTGTTCTTGCCACTTTGATCTCAATGTTTTATGTTGACAAGTTTGGTAGGAGAGCTTTCTTTTTGGAAGCTGGTGCTGAAATGTTCTTGTGCATGGTAAGTACTACACCATCTTTTTTTTCTTCTTAATTTTCACCTACTTAAATAATGTTTCAAAACTGGACCGAACTACCAAGTTCGACCTAGAATCAATTAGTTCACCGGTTGGTTTGATCCCGATTACATTGGAGTCTGGTTGAAATATATTTTTTCAAGGCGGGTCGATTTAACTGATTTTAATGCTAATATATGAGACCATTTTGATTTGCAGGTAGCTGCAGCAATTGTTTTGGCTCTTGGGTTTGGTGATGGCAAACAATTATCATTTGGTGTCAGTGTCTTTTTGGTTATTGTGATTTTTCTGTTTGTGTTGGGATTTGGAAGATCATGGGGACCCTTAGGATGGTTGGTTCCAAGTGAGCTTTTCCCATTAGAGATAAGATCAGCTGCACAAAGTGTTGTGGTGTGTGTTAACATGATCTTCACTGCCATTGTTGCACAATTCTTCCTTGTATCACTCTGCCACCTTAAATATGGAATCTTCTTACTTTTTGCTGGCTTGATTCTCGTCATGAGTCTTTTCATATTCTTTCTATTGCCGGAAACAAAGCAAGTTCCCATTGAAGAGATTTATCTTCTCTTCGAGAACCATTGGTTTTGGAAGAGATATGTAGCAGATGGAAATCAAGAGAGAGCATCAAATGAACATGCATAA
Protein sequence

>MS.gene04728.t1

MAGGGFGDGGNLKRAHLYEYKITGYFIFSCIVGALGGSLFGYDLGVSGGVTSMDDFLKEFFPNVYERKHAHLAETDYCKYDDQMLTLFTSSLYFAALISTFFASSITKNKGRRASIVVGSISFFIGAVLNAASLNIYMLIIGRILLGVGIGFGNQAVPLYLSEMSPAKVRGAVNQLFQLTTCLGILVANLVNYATEQIHPWGWRLSLGLAVVPAIVMFIGGLLCPETPNSLVEQGKMEEARKVLERVRGTPNVDAEFEDLVEASREAQAIKNPFQNLLLRKNRPQFVIGALAIPAFQQLTGNNSILFYAPVLFQTLGFGSAASLYSSVITSIALVLATLISMFYVDKFGRRAFFLEAGAEMFLCMVAAAIVLALGFGDGKQLSFGVSVFLVIVIFLFVLGFGRSWGPLGWLVPSELFPLEIRSAAQSVVVCVNMIFTAIVAQFFLVSLCHLKYGIFLLFAGLILVMSLFIFFLLPETKQVPIEEIYLLFENHWFWKRYVADGNQERASNEHA