Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047684.t1 | XP_003611826.1 | 93.1 | 262 | 18 | 0 | 1 | 262 | 1 | 262 | 1.50E-137 | 498.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047684.t1 | O80477 | 44.9 | 265 | 132 | 6 | 4 | 261 | 5 | 262 | 3.5e-58 | 226.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047684.t1 | A0A072UD42 | 93.1 | 262 | 18 | 0 | 1 | 262 | 1 | 262 | 1.1e-137 | 498.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87350 | MS.gene047684 | PPI |
| MS.gene047684 | MS.gene041151 | PPI |
| MS.gene047684 | MS.gene44962 | PPI |
| MS.gene047684 | MS.gene011884 | PPI |
| MS.gene047684 | MS.gene047689 | PPI |
| MS.gene28543 | MS.gene047684 | PPI |
| MS.gene047684 | MS.gene010412 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047684.t1 | MTR_5g018280 | 93.130 | 262 | 18 | 0 | 1 | 262 | 1 | 262 | 0.0 | 513 |
| MS.gene047684.t1 | MTR_5g018300 | 86.692 | 263 | 34 | 1 | 1 | 262 | 1 | 263 | 1.91e-174 | 481 |
| MS.gene047684.t1 | MTR_5g018320 | 83.594 | 256 | 41 | 1 | 8 | 262 | 5 | 260 | 2.87e-163 | 452 |
| MS.gene047684.t1 | MTR_8g007675 | 53.125 | 256 | 117 | 3 | 8 | 261 | 32 | 286 | 2.76e-90 | 269 |
| MS.gene047684.t1 | MTR_8g008500 | 52.308 | 260 | 118 | 5 | 7 | 261 | 26 | 284 | 9.17e-90 | 267 |
| MS.gene047684.t1 | MTR_8g008505 | 50.388 | 258 | 122 | 3 | 7 | 261 | 27 | 281 | 3.04e-88 | 263 |
| MS.gene047684.t1 | MTR_8g008660 | 50.195 | 257 | 122 | 4 | 7 | 261 | 26 | 278 | 9.80e-86 | 257 |
| MS.gene047684.t1 | MTR_3g464040 | 47.674 | 258 | 127 | 3 | 7 | 261 | 18 | 270 | 2.72e-83 | 250 |
| MS.gene047684.t1 | MTR_8g007670 | 44.656 | 262 | 135 | 4 | 6 | 261 | 5 | 262 | 6.85e-77 | 234 |
| MS.gene047684.t1 | MTR_8g079120 | 41.509 | 265 | 146 | 4 | 1 | 261 | 1 | 260 | 4.53e-68 | 211 |
| MS.gene047684.t1 | MTR_8g007670 | 41.085 | 258 | 106 | 3 | 6 | 261 | 5 | 218 | 1.47e-65 | 203 |
| MS.gene047684.t1 | MTR_5g018350 | 37.452 | 259 | 148 | 5 | 8 | 261 | 7 | 256 | 8.67e-54 | 175 |
| MS.gene047684.t1 | MTR_5g018365 | 37.066 | 259 | 153 | 4 | 6 | 261 | 10 | 261 | 4.41e-52 | 171 |
| MS.gene047684.t1 | MTR_7g015220 | 38.095 | 252 | 151 | 3 | 8 | 258 | 124 | 371 | 3.65e-51 | 171 |
| MS.gene047684.t1 | MTR_3g005410 | 36.220 | 254 | 156 | 4 | 7 | 258 | 93 | 342 | 2.05e-47 | 161 |
| MS.gene047684.t1 | MTR_8g079120 | 41.718 | 163 | 91 | 2 | 6 | 167 | 51 | 210 | 3.51e-42 | 144 |
| MS.gene047684.t1 | MTR_5g068100 | 34.328 | 268 | 155 | 7 | 3 | 261 | 25 | 280 | 5.36e-42 | 145 |
| MS.gene047684.t1 | MTR_3g093730 | 35.632 | 261 | 148 | 6 | 6 | 258 | 34 | 282 | 1.10e-39 | 139 |
| MS.gene047684.t1 | MTR_3g093730 | 31.907 | 257 | 118 | 5 | 6 | 258 | 34 | 237 | 7.92e-32 | 117 |
| MS.gene047684.t1 | MTR_5g008130 | 41.772 | 79 | 45 | 1 | 184 | 261 | 2 | 80 | 4.66e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047684.t1 | AT2G23610 | 44.906 | 265 | 132 | 6 | 4 | 261 | 5 | 262 | 5.57e-75 | 229 |
| MS.gene047684.t1 | AT2G23620 | 42.966 | 263 | 136 | 7 | 6 | 261 | 7 | 262 | 2.52e-68 | 212 |
| MS.gene047684.t1 | AT3G50440 | 42.188 | 256 | 142 | 4 | 9 | 261 | 22 | 274 | 1.72e-67 | 210 |
| MS.gene047684.t1 | AT2G23560 | 42.164 | 268 | 139 | 6 | 1 | 261 | 1 | 259 | 1.91e-66 | 207 |
| MS.gene047684.t1 | AT2G23600 | 41.473 | 258 | 147 | 3 | 6 | 261 | 7 | 262 | 2.09e-66 | 207 |
| MS.gene047684.t1 | AT2G23600 | 41.473 | 258 | 147 | 3 | 6 | 261 | 22 | 277 | 2.93e-66 | 207 |
| MS.gene047684.t1 | AT4G37150 | 41.132 | 265 | 135 | 5 | 7 | 261 | 2 | 255 | 3.49e-66 | 206 |
| MS.gene047684.t1 | AT2G23610 | 40.541 | 259 | 107 | 4 | 4 | 261 | 5 | 217 | 1.19e-64 | 201 |
| MS.gene047684.t1 | AT2G23580 | 41.045 | 268 | 145 | 6 | 1 | 261 | 1 | 262 | 9.67e-61 | 193 |
| MS.gene047684.t1 | AT2G23590 | 38.403 | 263 | 141 | 4 | 5 | 261 | 24 | 271 | 8.95e-60 | 191 |
| MS.gene047684.t1 | AT2G23550 | 40.299 | 268 | 147 | 7 | 1 | 261 | 1 | 262 | 1.83e-58 | 187 |
| MS.gene047684.t1 | AT2G23550 | 40.299 | 268 | 147 | 7 | 1 | 261 | 8 | 269 | 2.08e-58 | 187 |
| MS.gene047684.t1 | AT5G10300 | 36.981 | 265 | 151 | 5 | 4 | 261 | 2 | 257 | 4.33e-50 | 165 |
| MS.gene047684.t1 | AT1G26360 | 36.187 | 257 | 158 | 3 | 3 | 258 | 185 | 436 | 4.56e-50 | 170 |
| MS.gene047684.t1 | AT3G29770 | 37.154 | 253 | 154 | 3 | 7 | 258 | 137 | 385 | 1.04e-47 | 163 |
| MS.gene047684.t1 | AT5G58310 | 32.959 | 267 | 158 | 4 | 6 | 260 | 3 | 260 | 4.05e-46 | 155 |
| MS.gene047684.t1 | AT1G33990 | 34.375 | 256 | 162 | 3 | 5 | 258 | 94 | 345 | 4.91e-46 | 157 |
| MS.gene047684.t1 | AT1G69240 | 34.496 | 258 | 161 | 5 | 4 | 258 | 184 | 436 | 1.09e-45 | 159 |
| MS.gene047684.t1 | AT4G09900 | 32.677 | 254 | 165 | 3 | 7 | 258 | 97 | 346 | 6.31e-45 | 154 |
| MS.gene047684.t1 | AT2G23550 | 35.581 | 267 | 132 | 7 | 1 | 261 | 1 | 233 | 3.01e-44 | 149 |
| MS.gene047684.t1 | AT2G23600 | 43.902 | 164 | 90 | 2 | 6 | 167 | 22 | 185 | 2.96e-42 | 143 |
| MS.gene047684.t1 | AT4G37140 | 49.153 | 118 | 60 | 0 | 7 | 124 | 2 | 119 | 1.39e-40 | 137 |
| MS.gene047684.t1 | AT4G16690 | 33.725 | 255 | 148 | 5 | 8 | 254 | 12 | 253 | 6.14e-40 | 139 |
| MS.gene047684.t1 | AT3G10870 | 34.375 | 256 | 158 | 3 | 8 | 258 | 20 | 270 | 1.76e-38 | 136 |
| MS.gene047684.t1 | AT2G23580 | 41.860 | 172 | 89 | 5 | 1 | 165 | 1 | 168 | 2.02e-36 | 128 |
| MS.gene047684.t1 | AT5G10300 | 51.852 | 108 | 52 | 0 | 4 | 111 | 2 | 109 | 3.35e-36 | 128 |
| MS.gene047684.t1 | AT2G23550 | 52.679 | 112 | 52 | 1 | 1 | 111 | 8 | 119 | 4.37e-34 | 122 |
| MS.gene047684.t1 | AT4G37140 | 50.549 | 91 | 45 | 0 | 7 | 97 | 2 | 92 | 3.29e-32 | 114 |
| MS.gene047684.t1 | AT2G23570 | 36.957 | 184 | 104 | 5 | 84 | 261 | 1 | 178 | 4.58e-27 | 103 |
| MS.gene047684.t1 | AT3G29770 | 41.096 | 73 | 43 | 0 | 8 | 80 | 138 | 210 | 3.64e-16 | 76.6 |
Find 59 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGATCCATGTTATT+TGG | 0.170280 | 5.3:-10341696 | MS.gene047684:CDS |
| GTTACTTTGTTAAAATCTTC+TGG | 0.251172 | 5.3:-10346180 | MS.gene047684:CDS |
| CTATCGTCAAACATTATCTT+TGG | 0.258055 | 5.3:+10341732 | None:intergenic |
| ACACTAGACATGGCTGCTTC+TGG | 0.272663 | 5.3:-10346144 | MS.gene047684:CDS |
| GATCCATTTGGTTTATCATT+TGG | 0.284054 | 5.3:+10341708 | None:intergenic |
| AACCGTTGATTGAATTTCTA+AGG | 0.286543 | 5.3:-10346071 | MS.gene047684:CDS |
| AGACATTTCGTGTTGATTCA+TGG | 0.318093 | 5.3:-10346237 | MS.gene047684:CDS |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.3:+10346114 | None:intergenic |
| CCAAATAACATGGATCCATT+TGG | 0.363219 | 5.3:+10341696 | None:intergenic |
| CACTAGACATGGCTGCTTCT+GGG | 0.371034 | 5.3:-10346143 | MS.gene047684:CDS |
| AGATATGCACAAAGCTCTTT+CGG | 0.381008 | 5.3:+10341253 | None:intergenic |
| TATCGTCAAACATTATCTTT+GGG | 0.398330 | 5.3:+10341733 | None:intergenic |
| GCGTTGACACTTTGTCTTGT+TGG | 0.421929 | 5.3:+10341365 | None:intergenic |
| GCTCATGCACTTGCTTTGGA+TGG | 0.429708 | 5.3:+10346118 | None:intergenic |
| AGAGTCACAAAAGATAACTA+TGG | 0.439838 | 5.3:-10341415 | MS.gene047684:CDS |
| CATTATCTTTGGGTTCATGC+TGG | 0.440445 | 5.3:+10341743 | None:intergenic |
| CCCTTGCAATGTCATTACTA+AGG | 0.454789 | 5.3:-10341483 | MS.gene047684:CDS |
| TTGGCACACAATGAAGACTT+TGG | 0.463878 | 5.3:+10341384 | None:intergenic |
| CTTGCCATGGGGCATGGTGT+TGG | 0.464715 | 5.3:-10346212 | MS.gene047684:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.471584 | 5.3:+10341310 | None:intergenic |
| AGTCCAAATGATAAACCAAA+TGG | 0.475525 | 5.3:-10341711 | MS.gene047684:CDS |
| ATTGCAGAGTAGACAAAGTT+GGG | 0.486451 | 5.3:-10341769 | MS.gene047684:intron |
| CTAAGGCCTGCTAGGAGCTA+TGG | 0.487770 | 5.3:-10341466 | MS.gene047684:CDS |
| ATTATCTTTGGGTTCATGCT+GGG | 0.490195 | 5.3:+10341744 | None:intergenic |
| TGGGGCATGGTGTTGGTACA+AGG | 0.499948 | 5.3:-10346205 | MS.gene047684:CDS |
| TTGATTCATGGATCTTGCCA+TGG | 0.506866 | 5.3:-10346225 | MS.gene047684:CDS |
| AATTGCAGAGTAGACAAAGT+TGG | 0.508628 | 5.3:-10341770 | MS.gene047684:intron |
| TGTCATTACTAAGGCCTGCT+AGG | 0.517957 | 5.3:-10341474 | MS.gene047684:CDS |
| AGATTCAAGAAGGATAGATC+AGG | 0.520116 | 5.3:+10345919 | None:intergenic |
| GCCTTAGTAATGACATTGCA+AGG | 0.521219 | 5.3:+10341482 | None:intergenic |
| ATGGATCTTGCCATGGGGCA+TGG | 0.523884 | 5.3:-10346218 | MS.gene047684:CDS |
| TGATTCATGGATCTTGCCAT+GGG | 0.528952 | 5.3:-10346224 | MS.gene047684:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.3:-10346024 | MS.gene047684:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.3:-10346115 | MS.gene047684:CDS |
| GACCTTAGAAATTCAATCAA+CGG | 0.539220 | 5.3:+10346069 | None:intergenic |
| TCATCACCATAGCTCCTAGC+AGG | 0.541402 | 5.3:+10341460 | None:intergenic |
| GATTTGTTGGCCAAATAACA+TGG | 0.546829 | 5.3:+10341686 | None:intergenic |
| AGGATAACTCTCTGATCTTG+TGG | 0.549693 | 5.3:+10346042 | None:intergenic |
| TTTGTTAGGAAATAATTCCA+TGG | 0.552369 | 5.3:+10345981 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.3:-10346021 | MS.gene047684:CDS |
| CGAAGTCACAACACTAGACA+TGG | 0.578644 | 5.3:-10346154 | MS.gene047684:CDS |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.3:-10345998 | MS.gene047684:CDS |
| CATAGGCATGTGGTCAGCAT+CGG | 0.583621 | 5.3:+10341285 | None:intergenic |
| GATCAGAGAGTTATCCTAGT+GGG | 0.590310 | 5.3:-10346036 | MS.gene047684:CDS |
| CTCTTGGAATAGATTCAAGA+AGG | 0.590863 | 5.3:+10345909 | None:intergenic |
| TCACTTTGACATCATTAGCA+GGG | 0.599089 | 5.3:+10341311 | None:intergenic |
| CTTCTTGAATCTATTCCAAG+AGG | 0.608051 | 5.3:-10345908 | MS.gene047684:intron |
| AAGAAGGATAGATCAGGAGA+AGG | 0.614120 | 5.3:+10345925 | None:intergenic |
| TCTTTCGGTTTAGAGAACAT+AGG | 0.623701 | 5.3:+10341268 | None:intergenic |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.3:-10346004 | MS.gene047684:CDS |
| ATTAGCCAGCATACCTCAGG+TGG | 0.628093 | 5.3:+10341639 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.3:+10346022 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.3:-10346020 | MS.gene047684:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.3:+10346208 | None:intergenic |
| GTTTAGAGAACATAGGCATG+TGG | 0.663433 | 5.3:+10341275 | None:intergenic |
| CCTTAGTAATGACATTGCAA+GGG | 0.667410 | 5.3:+10341483 | None:intergenic |
| GATTCATGGATCTTGCCATG+GGG | 0.682835 | 5.3:-10346223 | MS.gene047684:CDS |
| GTATCAACTATCTCCACCTG+AGG | 0.704577 | 5.3:-10341652 | MS.gene047684:intron |
| AGATCAGAGAGTTATCCTAG+TGG | 0.723245 | 5.3:-10346037 | MS.gene047684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAAAAATTAAAAAT+AGG | + | chr5.3:10345360-10345379 | None:intergenic | 0.0% |
| !! | AAAAAAGTTTGTATAATAAA+TGG | - | chr5.3:10342242-10342261 | MS.gene047684:intron | 10.0% |
| !! | AAAAAGTTTGTATAATAAAT+GGG | - | chr5.3:10342243-10342262 | MS.gene047684:intron | 10.0% |
| !! | AATTATAACAAACATAATAA+AGG | + | chr5.3:10343767-10343786 | None:intergenic | 10.0% |
| !! | TTAAAAAAATTAATGATTGT+TGG | - | chr5.3:10342297-10342316 | MS.gene047684:intron | 10.0% |
| !!! | AAAAATTGATTTTGAATAAA+AGG | - | chr5.3:10343384-10343403 | MS.gene047684:intron | 10.0% |
| !!! | AATTGATTTTTAGAATTTTT+AGG | - | chr5.3:10345425-10345444 | MS.gene047684:intron | 10.0% |
| !!! | TATTTTCATAATTTAAAAAG+TGG | + | chr5.3:10341833-10341852 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTAACTATTG+AGG | - | chr5.3:10344221-10344240 | MS.gene047684:intron | 10.0% |
| !! | AAATGCAAAAATAATATAGT+TGG | - | chr5.3:10342118-10342137 | MS.gene047684:intron | 15.0% |
| !! | AATGCAAAAATAATATAGTT+GGG | - | chr5.3:10342119-10342138 | MS.gene047684:intron | 15.0% |
| !! | AATTAACAAAAAAACACAAA+AGG | - | chr5.3:10342674-10342693 | MS.gene047684:intron | 15.0% |
| !! | AATTAATTACATCCATAATT+TGG | + | chr5.3:10343025-10343044 | None:intergenic | 15.0% |
| !! | ATATTAAAGGTAAATATTGT+AGG | + | chr5.3:10342360-10342379 | None:intergenic | 15.0% |
| !! | ATTAATTACATCCATAATTT+GGG | + | chr5.3:10343024-10343043 | None:intergenic | 15.0% |
| !! | TCAAATATAATATCATAGTA+GGG | + | chr5.3:10343875-10343894 | None:intergenic | 15.0% |
| !! | TTCAAATATAATATCATAGT+AGG | + | chr5.3:10343876-10343895 | None:intergenic | 15.0% |
| !!! | AAAATGCTATTTTAAAAGTT+TGG | + | chr5.3:10344408-10344427 | None:intergenic | 15.0% |
| !!! | AAAATTCAAAACTTTTGAAA+TGG | - | chr5.3:10345521-10345540 | MS.gene047684:intron | 15.0% |
| !!! | AAATGCTATTTTAAAAGTTT+GGG | + | chr5.3:10344407-10344426 | None:intergenic | 15.0% |
| !!! | AAATTCAAAACTTTTGAAAT+GGG | - | chr5.3:10345522-10345541 | MS.gene047684:intron | 15.0% |
| !!! | AACTAATGCAATTTTTTTTT+CGG | + | chr5.3:10345403-10345422 | None:intergenic | 15.0% |
| !!! | ATAGGTGATATATTTTTTTA+TGG | - | chr5.3:10342021-10342040 | MS.gene047684:intron | 15.0% |
| !!! | CAATATTTTATTTGATCAAA+TGG | - | chr5.3:10343054-10343073 | MS.gene047684:intron | 15.0% |
| !!! | TAGGTGATATATTTTTTTAT+GGG | - | chr5.3:10342022-10342041 | MS.gene047684:intron | 15.0% |
| !!! | TATCATTTAACCTAATATTT+TGG | + | chr5.3:10344347-10344366 | None:intergenic | 15.0% |
| !!! | TTTTTATGATTTTATTTGAC+AGG | - | chr5.3:10345453-10345472 | MS.gene047684:intron | 15.0% |
| !!! | TTTTTTTCAATATTCTATAG+TGG | + | chr5.3:10342915-10342934 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTTTGATTTTCT+AGG | + | chr5.3:10345260-10345279 | None:intergenic | 15.0% |
| !! | ATATGAGAAAGATCAAAATA+AGG | + | chr5.3:10341609-10341628 | None:intergenic | 20.0% |
| !! | ATGCAAAAATAATATAGTTG+GGG | - | chr5.3:10342120-10342139 | MS.gene047684:intron | 20.0% |
| !! | CTAAAATTAAAATAATGACG+TGG | - | chr5.3:10342965-10342984 | MS.gene047684:intron | 20.0% |
| !! | TATAAAATCCAAATTCACTT+TGG | - | chr5.3:10345586-10345605 | MS.gene047684:intron | 20.0% |
| !! | TTAAAAATGAAGATAAAGAG+TGG | - | chr5.3:10344189-10344208 | MS.gene047684:intron | 20.0% |
| !! | TTAAGTAGAATCAATTCTAA+AGG | - | chr5.3:10343517-10343536 | MS.gene047684:intron | 20.0% |
| !! | TTACACTTTATATACTTTAG+AGG | + | chr5.3:10342276-10342295 | None:intergenic | 20.0% |
| !! | TTCACAAATTGAAACTATAA+CGG | + | chr5.3:10344819-10344838 | None:intergenic | 20.0% |
| !! | TTTGGGAAGAAAAAAAATTA+GGG | + | chr5.3:10344879-10344898 | None:intergenic | 20.0% |
| !!! | AAAGTGATACTTTAAAAGTT+TGG | - | chr5.3:10344638-10344657 | MS.gene047684:intron | 20.0% |
| !!! | AACTTTTAAAGTATCACTTT+TGG | + | chr5.3:10344638-10344657 | None:intergenic | 20.0% |
| !!! | AGCATTTTTAGAAATTTTAC+AGG | - | chr5.3:10345642-10345661 | MS.gene047684:intron | 20.0% |
| !!! | GCATTTTTAGAAATTTTACA+GGG | - | chr5.3:10345643-10345662 | MS.gene047684:intron | 20.0% |
| !!! | GGATTTTATAATCTCAAATA+TGG | + | chr5.3:10345576-10345595 | None:intergenic | 20.0% |
| !!! | TATTTTATCTAAGTCATTAG+AGG | - | chr5.3:10343669-10343688 | MS.gene047684:intron | 20.0% |
| !!! | TTTTGGGAAGAAAAAAAATT+AGG | + | chr5.3:10344880-10344899 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTCTTTTGAG+AGG | - | chr5.3:10341649-10341668 | MS.gene047684:intron | 20.0% |
| ! | CATCTTATCTTATAGTAACA+AGG | - | chr5.3:10342584-10342603 | MS.gene047684:intron | 25.0% |
| ! | CGGTAATTGAAGAAAAAATA+TGG | + | chr5.3:10344799-10344818 | None:intergenic | 25.0% |
| ! | TATCGTCAAACATTATCTTT+GGG | + | chr5.3:10345750-10345769 | None:intergenic | 25.0% |
| ! | TCTAGTTGTTTGATTAAGAT+TGG | + | chr5.3:10342470-10342489 | None:intergenic | 25.0% |
| ! | TTAATTGTTATCATCAACTC+TGG | - | chr5.3:10341681-10341700 | MS.gene047684:CDS | 25.0% |
| ! | TTCGAATTATATAATCCGAA+TGG | + | chr5.3:10344905-10344924 | None:intergenic | 25.0% |
| ! | TTTGTTAGGAAATAATTCCA+TGG | + | chr5.3:10341502-10341521 | None:intergenic | 25.0% |
| !! | AAAAGAGTTTTTCTCCAATT+CGG | - | chr5.3:10344952-10344971 | MS.gene047684:intron | 25.0% |
| !! | AAATTCACTTTGGATGTTTT+CGG | - | chr5.3:10345596-10345615 | MS.gene047684:intron | 25.0% |
| !! | AACAACTAGAAATCTTTTGA+CGG | - | chr5.3:10342480-10342499 | MS.gene047684:intron | 25.0% |
| !! | AATTTAAAATGCGAAGTACT+TGG | - | chr5.3:10344280-10344299 | MS.gene047684:intron | 25.0% |
| !! | ATATAATCCGAATGGTATTT+TGG | + | chr5.3:10344897-10344916 | None:intergenic | 25.0% |
| !! | ATGAAATTTTGGATTTTGAG+GGG | + | chr5.3:10345329-10345348 | None:intergenic | 25.0% |
| !! | ATGTGTAAAACATGTCTTTT+TGG | + | chr5.3:10342853-10342872 | None:intergenic | 25.0% |
| !! | ATTTTATAACCCAAAAACCT+GGG | - | chr5.3:10345619-10345638 | MS.gene047684:intron | 25.0% |
| !! | CCTTAAAAAGGGATTTTTAA+GGG | + | chr5.3:10345047-10345066 | None:intergenic | 25.0% |
| !! | CCTTAAAAATCCCTTTTTAA+GGG | - | chr5.3:10345045-10345064 | MS.gene047684:intron | 25.0% |
| !! | GATGAAATTTTGGATTTTGA+GGG | + | chr5.3:10345330-10345349 | None:intergenic | 25.0% |
| !! | GTTACTTTGTTAAAATCTTC+TGG | - | chr5.3:10341300-10341319 | MS.gene047684:CDS | 25.0% |
| !! | TATAATCCGAATGGTATTTT+GGG | + | chr5.3:10344896-10344915 | None:intergenic | 25.0% |
| !! | TATTTCTGATACAAAGTACA+GGG | + | chr5.3:10344000-10344019 | None:intergenic | 25.0% |
| !!! | AACTGTTTTTCCCTTAAAAA+GGG | + | chr5.3:10345058-10345077 | None:intergenic | 25.0% |
| !!! | ACACAATTTTGGAACAAAAA+TGG | + | chr5.3:10344557-10344576 | None:intergenic | 25.0% |
| !!! | CGAAACTAGCTTAATTTTTA+AGG | + | chr5.3:10344253-10344272 | None:intergenic | 25.0% |
| !!! | CTTAAAAAGGGATTTTTAAG+GGG | + | chr5.3:10345046-10345065 | None:intergenic | 25.0% |
| !!! | CTTCTAAAGTGAATTAACTA+TGG | + | chr5.3:10342398-10342417 | None:intergenic | 25.0% |
| !!! | TTGAAAGCATCCAAAATATT+AGG | - | chr5.3:10344334-10344353 | MS.gene047684:intron | 25.0% |
| AATCCGAAAACCTCAAAATA+GGG | - | chr5.3:10344982-10345001 | MS.gene047684:intron | 30.0% | |
| AGAGTCACAAAAGATAACTA+TGG | - | chr5.3:10346065-10346084 | MS.gene047684:CDS | 30.0% | |
| AGTCCAAATGATAAACCAAA+TGG | - | chr5.3:10345769-10345788 | MS.gene047684:intron | 30.0% | |
| ATTGTTTATTGCCTCATTAG+AGG | + | chr5.3:10343727-10343746 | None:intergenic | 30.0% | |
| CGTTTATCTCTATCACAAAT+GGG | - | chr5.3:10343801-10343820 | MS.gene047684:intron | 30.0% | |
| CTACTTAAAGCTCAAATTTG+TGG | + | chr5.3:10343505-10343524 | None:intergenic | 30.0% | |
| CTATCGTCAAACATTATCTT+TGG | + | chr5.3:10345751-10345770 | None:intergenic | 30.0% | |
| GAAAACATCCAAAGTGAATT+TGG | + | chr5.3:10345597-10345616 | None:intergenic | 30.0% | |
| GAAATGCTTATATATGAACC+AGG | - | chr5.3:10345968-10345987 | MS.gene047684:CDS | 30.0% | |
| GACCTTAGAAATTCAATCAA+CGG | + | chr5.3:10341414-10341433 | None:intergenic | 30.0% | |
| GATGTTCTTAGTCAAAAATC+CGG | - | chr5.3:10345198-10345217 | MS.gene047684:intron | 30.0% | |
| GTTTATCTCTATCACAAATG+GGG | - | chr5.3:10343802-10343821 | MS.gene047684:intron | 30.0% | |
| GTTTGTATAATAAATGGGCA+AGG | - | chr5.3:10342248-10342267 | MS.gene047684:intron | 30.0% | |
| TAACAATGACCTAAAACAGA+AGG | + | chr5.3:10345178-10345197 | None:intergenic | 30.0% | |
| TAATCCGAAAACCTCAAAAT+AGG | - | chr5.3:10344981-10345000 | MS.gene047684:intron | 30.0% | |
| TCGGATTATAAAATCCGAAT+TGG | + | chr5.3:10344969-10344988 | None:intergenic | 30.0% | |
| TCGTTTATCTCTATCACAAA+TGG | - | chr5.3:10343800-10343819 | MS.gene047684:intron | 30.0% | |
| TCTAATGAGGCAATAAACAA+TGG | - | chr5.3:10343726-10343745 | MS.gene047684:intron | 30.0% | |
| TGACCTGGTCAAAATTAAAA+GGG | + | chr5.3:10344468-10344487 | None:intergenic | 30.0% | |
| TGAGTGAGAAAAAAAGAAGA+AGG | - | chr5.3:10343622-10343641 | MS.gene047684:intron | 30.0% | |
| TTATGAACATGTTTGCAACA+TGG | - | chr5.3:10345111-10345130 | MS.gene047684:intron | 30.0% | |
| TTGCAGACACATATTATTAG+CGG | - | chr5.3:10346258-10346277 | MS.gene047684:CDS | 30.0% | |
| TTGTCATCAAATGATTGTGA+GGG | - | chr5.3:10341987-10342006 | MS.gene047684:intron | 30.0% | |
| TTTCTTCCCAAAATACCATT+CGG | - | chr5.3:10344887-10344906 | MS.gene047684:intron | 30.0% | |
| TTTGTCATCAAATGATTGTG+AGG | - | chr5.3:10341986-10342005 | MS.gene047684:intron | 30.0% | |
| ! | AAATTTCTAAAAATGCTCCC+AGG | + | chr5.3:10345639-10345658 | None:intergenic | 30.0% |
| ! | AACCGTTGATTGAATTTCTA+AGG | - | chr5.3:10341409-10341428 | MS.gene047684:CDS | 30.0% |
| ! | AGAATTGATTCTGACATGTT+TGG | + | chr5.3:10343568-10343587 | None:intergenic | 30.0% |
| ! | AGGTCTAAACGATGAAATTT+TGG | + | chr5.3:10345340-10345359 | None:intergenic | 30.0% |
| ! | ATTTAATTTCATCCACAGTC+GGG | - | chr5.3:10342939-10342958 | MS.gene047684:intron | 30.0% |
| ! | ATTTGAGATACGTTCTTCAT+AGG | + | chr5.3:10343852-10343871 | None:intergenic | 30.0% |
| ! | CAACATGGACAATCATTTTA+AGG | - | chr5.3:10345126-10345145 | MS.gene047684:intron | 30.0% |
| ! | CATTTAATTTCATCCACAGT+CGG | - | chr5.3:10342938-10342957 | MS.gene047684:intron | 30.0% |
| ! | CCCTTAAAAAGGGATTTTTA+AGG | + | chr5.3:10345048-10345067 | None:intergenic | 30.0% |
| ! | CCCTTAAAAATCCCTTTTTA+AGG | - | chr5.3:10345044-10345063 | MS.gene047684:intron | 30.0% |
| ! | CGATGAAATTTTGGATTTTG+AGG | + | chr5.3:10345331-10345350 | None:intergenic | 30.0% |
| ! | CTTCCACAAATTGACAATTT+TGG | + | chr5.3:10344668-10344687 | None:intergenic | 30.0% |
| ! | GATCCATTTGGTTTATCATT+TGG | + | chr5.3:10345775-10345794 | None:intergenic | 30.0% |
| ! | GATTTTATAACCCAAAAACC+TGG | - | chr5.3:10345618-10345637 | MS.gene047684:intron | 30.0% |
| ! | GTGATACTTTAAAAGTTTGG+AGG | - | chr5.3:10344641-10344660 | MS.gene047684:intron | 30.0% |
| ! | TTGATTTTCTAGGCAAGTTT+CGG | + | chr5.3:10345250-10345269 | None:intergenic | 30.0% |
| !! | CTATTTCTGATACAAAGTAC+AGG | + | chr5.3:10344001-10344020 | None:intergenic | 30.0% |
| !! | GAACTGTTTTTCCCTTAAAA+AGG | + | chr5.3:10345059-10345078 | None:intergenic | 30.0% |
| !! | TCTTTGAAATATGAACCAAG+TGG | - | chr5.3:10342771-10342790 | MS.gene047684:intron | 30.0% |
| !!! | CTTCTTTTTTTCTCACTCAA+GGG | + | chr5.3:10343621-10343640 | None:intergenic | 30.0% |
| !!! | TCTTCTTTTTTTCTCACTCA+AGG | + | chr5.3:10343622-10343641 | None:intergenic | 30.0% |
| !!! | TGGACGAATCTTTATTTTGA+TGG | + | chr5.3:10342450-10342469 | None:intergenic | 30.0% |
| !!! | TTTTTTATGGGTTGTGTTGT+TGG | - | chr5.3:10342034-10342053 | MS.gene047684:intron | 30.0% |
| AAGGATAATCAAGTACCTCT+TGG | + | chr5.3:10341590-10341609 | None:intergenic | 35.0% | |
| AATTGCAGAGTAGACAAAGT+TGG | - | chr5.3:10345710-10345729 | MS.gene047684:intron | 35.0% | |
| AGATATGCACAAAGCTCTTT+CGG | + | chr5.3:10346230-10346249 | None:intergenic | 35.0% | |
| AGATTCAAGAAGGATAGATC+AGG | + | chr5.3:10341564-10341583 | None:intergenic | 35.0% | |
| ATAATCAAGACTCCCATAGA+AGG | - | chr5.3:10345284-10345303 | MS.gene047684:intron | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | chr5.3:10346173-10346192 | None:intergenic | 35.0% | |
| ATGTAGTAGCACTTGAGATA+TGG | + | chr5.3:10343971-10343990 | None:intergenic | 35.0% | |
| ATTGCAGAGTAGACAAAGTT+GGG | - | chr5.3:10345711-10345730 | MS.gene047684:intron | 35.0% | |
| ATTGTCAATTTGTGGAAGCT+TGG | - | chr5.3:10344670-10344689 | MS.gene047684:intron | 35.0% | |
| CCAAATAACATGGATCCATT+TGG | + | chr5.3:10345787-10345806 | None:intergenic | 35.0% | |
| CCAAATGGATCCATGTTATT+TGG | - | chr5.3:10345784-10345803 | MS.gene047684:intron | 35.0% | |
| CCTTAGTAATGACATTGCAA+GGG | + | chr5.3:10346000-10346019 | None:intergenic | 35.0% | |
| CTCTTGGAATAGATTCAAGA+AGG | + | chr5.3:10341574-10341593 | None:intergenic | 35.0% | |
| CTGACCTGGTCAAAATTAAA+AGG | + | chr5.3:10344469-10344488 | None:intergenic | 35.0% | |
| CTTCTTGAATCTATTCCAAG+AGG | - | chr5.3:10341572-10341591 | MS.gene047684:intron | 35.0% | |
| GGACCAAAATTGTCAATTTG+TGG | - | chr5.3:10344662-10344681 | MS.gene047684:intron | 35.0% | |
| TAAGTGTGATTCCTCTAATG+AGG | - | chr5.3:10343713-10343732 | MS.gene047684:intron | 35.0% | |
| TAATCAAGACTCCCATAGAA+GGG | - | chr5.3:10345285-10345304 | MS.gene047684:intron | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | chr5.3:10346172-10346191 | None:intergenic | 35.0% | |
| TCTTTCGGTTTAGAGAACAT+AGG | + | chr5.3:10346215-10346234 | None:intergenic | 35.0% | |
| TGCTTCGTCAAAATCAGTTA+GGG | - | chr5.3:10344578-10344597 | MS.gene047684:intron | 35.0% | |
| TTCACACAACGAACTAAAGT+TGG | - | chr5.3:10344608-10344627 | MS.gene047684:intron | 35.0% | |
| TTGACTTTGCAATGTCTCTA+TGG | - | chr5.3:10343088-10343107 | MS.gene047684:intron | 35.0% | |
| TTGCTTCGTCAAAATCAGTT+AGG | - | chr5.3:10344577-10344596 | MS.gene047684:intron | 35.0% | |
| TTGTCAATTTGTGGAAGCTT+GGG | - | chr5.3:10344671-10344690 | MS.gene047684:intron | 35.0% | |
| TTTGCAAAAGAGGCTAAAGT+TGG | + | chr5.3:10344437-10344456 | None:intergenic | 35.0% | |
| ! | AAAAATGCTCCCAGGTTTTT+GGG | + | chr5.3:10345631-10345650 | None:intergenic | 35.0% |
| ! | ACGCCTCAAAAATGATTTGT+TGG | + | chr5.3:10345810-10345829 | None:intergenic | 35.0% |
| ! | ACTAGAAATCTTTTGACGGT+AGG | - | chr5.3:10342484-10342503 | MS.gene047684:intron | 35.0% |
| ! | ATTATCTTTGGGTTCATGCT+GGG | + | chr5.3:10345739-10345758 | None:intergenic | 35.0% |
| ! | ATTGTCACATAACTTGCCTT+AGG | + | chr5.3:10343307-10343326 | None:intergenic | 35.0% |
| ! | ATTTTGTGCCCCTGAAAATT+TGG | - | chr5.3:10343239-10343258 | MS.gene047684:intron | 35.0% |
| ! | CTCTTTTAGTGCCCAAATTA+TGG | - | chr5.3:10343010-10343029 | MS.gene047684:intron | 35.0% |
| ! | CTTTTACAAACCGACGATTT+TGG | - | chr5.3:10344379-10344398 | MS.gene047684:intron | 35.0% |
| ! | TAAAAATGCTCCCAGGTTTT+TGG | + | chr5.3:10345632-10345651 | None:intergenic | 35.0% |
| ! | TACTGTGAAGCTCTTTTTAG+TGG | - | chr5.3:10344022-10344041 | MS.gene047684:intron | 35.0% |
| ! | TGACGAAGCAAACACAATTT+TGG | + | chr5.3:10344568-10344587 | None:intergenic | 35.0% |
| ! | TGTTTTACACATAGCACACA+TGG | - | chr5.3:10342861-10342880 | MS.gene047684:intron | 35.0% |
| ! | TTGTCACATAACTTGCCTTA+GGG | + | chr5.3:10343306-10343325 | None:intergenic | 35.0% |
| !! | AAATTTTGGATTTTGAGGGG+CGG | + | chr5.3:10345326-10345345 | None:intergenic | 35.0% |
| !! | AGACATTTCGTGTTGATTCA+TGG | - | chr5.3:10341243-10341262 | MS.gene047684:CDS | 35.0% |
| !! | ATCGTCGGTTTGTAAAAGTA+AGG | + | chr5.3:10344377-10344396 | None:intergenic | 35.0% |
| !! | CTTCACGTTTTGAATTTCAG+TGG | + | chr5.3:10344125-10344144 | None:intergenic | 35.0% |
| !! | GAAGCTCTTTTTAGTGGTTA+AGG | - | chr5.3:10344028-10344047 | MS.gene047684:intron | 35.0% |
| !! | GATTTGTTGGCCAAATAACA+TGG | + | chr5.3:10345797-10345816 | None:intergenic | 35.0% |
| !! | GGTTGCTTTGAACTTTTCAT+AGG | + | chr5.3:10344778-10344797 | None:intergenic | 35.0% |
| !! | TCGTCGGTTTGTAAAAGTAA+GGG | + | chr5.3:10344376-10344395 | None:intergenic | 35.0% |
| !! | TGGCCAACAAATCATTTTTG+AGG | - | chr5.3:10345804-10345823 | MS.gene047684:intron | 35.0% |
| !!! | AAAAACTCTTTTTTCACCCC+AGG | + | chr5.3:10344944-10344963 | None:intergenic | 35.0% |
| !!! | AAAACTCTTTTTTCACCCCA+GGG | + | chr5.3:10344943-10344962 | None:intergenic | 35.0% |
| !!! | AATTTGAGTTTTTTCCACCC+TGG | - | chr5.3:10344923-10344942 | MS.gene047684:intron | 35.0% |
| !!! | ATTTGAGTTTTTTCCACCCT+GGG | - | chr5.3:10344924-10344943 | MS.gene047684:intron | 35.0% |
| !!! | CTAGGAATTTTAAGATGTGG+AGG | - | chr5.3:10341732-10341751 | MS.gene047684:CDS | 35.0% |
| !!! | GAGCTAGGAATTTTAAGATG+TGG | - | chr5.3:10341729-10341748 | MS.gene047684:CDS | 35.0% |
| !!! | GGCTAGCTTAATTTTTAGGA+AGG | + | chr5.3:10344099-10344118 | None:intergenic | 35.0% |
| !!! | GGGGTGTACTACAATTTTTT+AGG | + | chr5.3:10344715-10344734 | None:intergenic | 35.0% |
| !!! | GGTGCGCTATTTGATTTTTT+TGG | - | chr5.3:10345003-10345022 | MS.gene047684:intron | 35.0% |
| !!! | TTTTTTTCTCACTCAAGGGT+AGG | + | chr5.3:10343617-10343636 | None:intergenic | 35.0% |
| AAAACAGAAGGATGAGAGTG+AGG | + | chr5.3:10345166-10345185 | None:intergenic | 40.0% | |
| AAGAAGGATAGATCAGGAGA+AGG | + | chr5.3:10341558-10341577 | None:intergenic | 40.0% | |
| ACACAACGAACTAAAGTTGG+AGG | - | chr5.3:10344611-10344630 | MS.gene047684:intron | 40.0% | |
| AGATCAGAGAGTTATCCTAG+TGG | - | chr5.3:10341443-10341462 | MS.gene047684:CDS | 40.0% | |
| AGGATAACTCTCTGATCTTG+TGG | + | chr5.3:10341441-10341460 | None:intergenic | 40.0% | |
| CCCTTGCAATGTCATTACTA+AGG | - | chr5.3:10345997-10346016 | MS.gene047684:CDS | 40.0% | |
| GATCAGAGAGTTATCCTAGT+GGG | - | chr5.3:10341444-10341463 | MS.gene047684:CDS | 40.0% | |
| GCCTTAGTAATGACATTGCA+AGG | + | chr5.3:10346001-10346020 | None:intergenic | 40.0% | |
| GTGACAATTTATCGCGTGTT+TGG | - | chr5.3:10343319-10343338 | MS.gene047684:intron | 40.0% | |
| GTGAGGGACAAAAGCTAAAT+AGG | - | chr5.3:10342003-10342022 | MS.gene047684:intron | 40.0% | |
| GTTTAGAGAACATAGGCATG+TGG | + | chr5.3:10346208-10346227 | None:intergenic | 40.0% | |
| TATAGTAACAAGGCAAGCCA+GGG | - | chr5.3:10342594-10342613 | MS.gene047684:intron | 40.0% | |
| TGAAATGGGAGAGATTCTGA+TGG | - | chr5.3:10345536-10345555 | MS.gene047684:intron | 40.0% | |
| TGATTCATGGATCTTGCCAT+GGG | - | chr5.3:10341256-10341275 | MS.gene047684:CDS | 40.0% | |
| TGTCAATTTGTGGAAGCTTG+GGG | - | chr5.3:10344672-10344691 | MS.gene047684:intron | 40.0% | |
| TTATAGTAACAAGGCAAGCC+AGG | - | chr5.3:10342593-10342612 | MS.gene047684:intron | 40.0% | |
| TTATCGCGTGTTTGGTTATG+CGG | - | chr5.3:10343327-10343346 | MS.gene047684:intron | 40.0% | |
| TTGATTCATGGATCTTGCCA+TGG | - | chr5.3:10341255-10341274 | MS.gene047684:CDS | 40.0% | |
| TTGGCACACAATGAAGACTT+TGG | + | chr5.3:10346099-10346118 | None:intergenic | 40.0% | |
| TTTCGTATCGTTCGCGATTT+CGG | + | chr5.3:10344748-10344767 | None:intergenic | 40.0% | |
| ! | AAATAGCGCACCCTATTTTG+AGG | + | chr5.3:10344995-10345014 | None:intergenic | 40.0% |
| ! | ACAGCAGCTGCAATTTTGTT+AGG | + | chr5.3:10341516-10341535 | None:intergenic | 40.0% |
| ! | ACTATCTCATGATTTGCCCA+AGG | + | chr5.3:10342641-10342660 | None:intergenic | 40.0% |
| ! | CACTCTCATCCTTCTGTTTT+AGG | - | chr5.3:10345166-10345185 | MS.gene047684:intron | 40.0% |
| ! | CATTATCTTTGGGTTCATGC+TGG | + | chr5.3:10345740-10345759 | None:intergenic | 40.0% |
| ! | CGATTTCGGTCTAAAATTGG+GGG | + | chr5.3:10344734-10344753 | None:intergenic | 40.0% |
| ! | CGCGATTTCGGTCTAAAATT+GGG | + | chr5.3:10344736-10344755 | None:intergenic | 40.0% |
| ! | GCGATTTCGGTCTAAAATTG+GGG | + | chr5.3:10344735-10344754 | None:intergenic | 40.0% |
| ! | TATCCTAGTTTAGAGCCACT+TGG | + | chr5.3:10342789-10342808 | None:intergenic | 40.0% |
| ! | TCGCGATTTCGGTCTAAAAT+TGG | + | chr5.3:10344737-10344756 | None:intergenic | 40.0% |
| ! | TGTCACATAACTTGCCTTAG+GGG | + | chr5.3:10343305-10343324 | None:intergenic | 40.0% |
| !! | ACGTTTTGAATTTCAGTGGC+GGG | + | chr5.3:10344121-10344140 | None:intergenic | 40.0% |
| !! | CACGTTTTGAATTTCAGTGG+CGG | + | chr5.3:10344122-10344141 | None:intergenic | 40.0% |
| !! | CGTCGGTTTGTAAAAGTAAG+GGG | + | chr5.3:10344375-10344394 | None:intergenic | 40.0% |
| !! | TAATTTTAGTGTCCCGACTG+TGG | + | chr5.3:10342954-10342973 | None:intergenic | 40.0% |
| !!! | AGGGATTTTTAAGGGGTGTT+CGG | + | chr5.3:10345039-10345058 | None:intergenic | 40.0% |
| !!! | CGTCCCTTTTAATTTTGACC+AGG | - | chr5.3:10344462-10344481 | MS.gene047684:intron | 40.0% |
| !!! | GCACCCTATTTTGAGGTTTT+CGG | + | chr5.3:10344988-10345007 | None:intergenic | 40.0% |
| !!! | TTTGAGTTTTTTCCACCCTG+GGG | - | chr5.3:10344925-10344944 | MS.gene047684:intron | 40.0% |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5.3:10341476-10341495 | MS.gene047684:CDS | 45.0% | |
| AGTTTGGGAGCCAAAATCGT+CGG | + | chr5.3:10344392-10344411 | None:intergenic | 45.0% | |
| CAACATATGCCTGTACGCAA+TGG | - | chr5.3:10341704-10341723 | MS.gene047684:CDS | 45.0% | |
| CCTTCAGATTTGGATGCCTT+GGG | - | chr5.3:10342622-10342641 | MS.gene047684:intron | 45.0% | |
| CGAAGTCACAACACTAGACA+TGG | - | chr5.3:10341326-10341345 | MS.gene047684:CDS | 45.0% | |
| CTGTAGGAAGTCCCTTCTAT+GGG | + | chr5.3:10345299-10345318 | None:intergenic | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5.3:10341482-10341501 | MS.gene047684:CDS | 45.0% | |
| GATTCATGGATCTTGCCATG+GGG | - | chr5.3:10341257-10341276 | MS.gene047684:CDS | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | - | chr5.3:10345828-10345847 | MS.gene047684:intron | 45.0% | |
| TCCTTCAGATTTGGATGCCT+TGG | - | chr5.3:10342621-10342640 | MS.gene047684:intron | 45.0% | |
| TGTCATTACTAAGGCCTGCT+AGG | - | chr5.3:10346006-10346025 | MS.gene047684:CDS | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5.3:10341456-10341475 | MS.gene047684:CDS | 45.0% |
| ! | CCAGTGCACCAAATTTTCAG+GGG | + | chr5.3:10343250-10343269 | None:intergenic | 45.0% |
| ! | CCCAGTGCACCAAATTTTCA+GGG | + | chr5.3:10343251-10343270 | None:intergenic | 45.0% |
| ! | GCGTTGACACTTTGTCTTGT+TGG | + | chr5.3:10346118-10346137 | None:intergenic | 45.0% |
| ! | GGACGACACTTTTGCAAAAG+AGG | + | chr5.3:10344447-10344466 | None:intergenic | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5.3:10341460-10341479 | MS.gene047684:CDS | 45.0% |
| ! | TGTCAGTATATGCACTGACC+TGG | + | chr5.3:10344483-10344502 | None:intergenic | 45.0% |
| ! | TTGATTAGCCAGCATACCTC+AGG | + | chr5.3:10345847-10345866 | None:intergenic | 45.0% |
| !! | CAAGTGTCGAGTGTAGACTT+TGG | + | chr5.3:10342818-10342837 | None:intergenic | 45.0% |
| !! | CCCTGAAAATTTGGTGCACT+GGG | - | chr5.3:10343248-10343267 | MS.gene047684:intron | 45.0% |
| !! | CGTTTTGAATTTCAGTGGCG+GGG | + | chr5.3:10344120-10344139 | None:intergenic | 45.0% |
| !! | GAACCAAGTGGCTCTAAACT+AGG | - | chr5.3:10342783-10342802 | MS.gene047684:intron | 45.0% |
| !!! | GCGGGGCTAGCTTAATTTTT+AGG | + | chr5.3:10344103-10344122 | None:intergenic | 45.0% |
| !! | AATAGTTAAAAAAAAAAAAA+AGG | + | chr5.3:10344220-10344239 | None:intergenic | 5.0% |
| !! | AATATTAATTAACATATTAA+AGG | + | chr5.3:10342373-10342392 | None:intergenic | 5.0% |
| !!! | TTTTTGTTAATTTTTTTATA+AGG | + | chr5.3:10342666-10342685 | None:intergenic | 5.0% |
| ACACTAGACATGGCTGCTTC+TGG | - | chr5.3:10341336-10341355 | MS.gene047684:CDS | 50.0% | |
| ACATTGCAAGGGACAAGTCC+TGG | + | chr5.3:10345989-10346008 | None:intergenic | 50.0% | |
| ATTAGCCAGCATACCTCAGG+TGG | + | chr5.3:10345844-10345863 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5.3:10341461-10341480 | None:intergenic | 50.0% | |
| CACTAGACATGGCTGCTTCT+GGG | - | chr5.3:10341337-10341356 | MS.gene047684:CDS | 50.0% | |
| CATAGGCATGTGGTCAGCAT+CGG | + | chr5.3:10346198-10346217 | None:intergenic | 50.0% | |
| CATATGCCTGTACGCAATGG+CGG | - | chr5.3:10341707-10341726 | MS.gene047684:CDS | 50.0% | |
| CCATAGAAGGGACTTCCTAC+AGG | - | chr5.3:10345297-10345316 | MS.gene047684:intron | 50.0% | |
| CCTGTAGGAAGTCCCTTCTA+TGG | + | chr5.3:10345300-10345319 | None:intergenic | 50.0% | |
| GGCATCCAAATCTGAAGGAC+CGG | + | chr5.3:10342620-10342639 | None:intergenic | 50.0% | |
| TATCTCCACCTGAGGTATGC+TGG | - | chr5.3:10345836-10345855 | MS.gene047684:intron | 50.0% | |
| TCATCACCATAGCTCCTAGC+AGG | + | chr5.3:10346023-10346042 | None:intergenic | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5.3:10341365-10341384 | MS.gene047684:CDS | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5.3:10341369-10341388 | None:intergenic | 50.0% | |
| TGCGTGAGAATGCGATAGGA+TGG | - | chr5.3:10345666-10345685 | MS.gene047684:intron | 50.0% | |
| ! | CACATAACTTGCCTTAGGGG+TGG | + | chr5.3:10343302-10343321 | None:intergenic | 50.0% |
| ! | CCCAAGGCATCCAAATCTGA+AGG | + | chr5.3:10342625-10342644 | None:intergenic | 50.0% |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5.3:10341459-10341478 | MS.gene047684:CDS | 50.0% |
| ! | GCCCAGTGCACCAAATTTTC+AGG | + | chr5.3:10343252-10343271 | None:intergenic | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5.3:10341365-10341384 | None:intergenic | 50.0% |
| !! | CCCCTGAAAATTTGGTGCAC+TGG | - | chr5.3:10343247-10343266 | MS.gene047684:intron | 50.0% |
| !!! | ACTCTTTTTTCACCCCAGGG+TGG | + | chr5.3:10344940-10344959 | None:intergenic | 50.0% |
| AGGGTGCGTGAGAATGCGAT+AGG | - | chr5.3:10345662-10345681 | MS.gene047684:intron | 55.0% | |
| ATGGATCTTGCCATGGGGCA+TGG | - | chr5.3:10341262-10341281 | MS.gene047684:CDS | 55.0% | |
| CTAAGGCCTGCTAGGAGCTA+TGG | - | chr5.3:10346014-10346033 | MS.gene047684:CDS | 55.0% | |
| GCGCGAGTAACACATAGGGT+GGG | + | chr5.3:10344855-10344874 | None:intergenic | 55.0% | |
| TCGCGTGTTTGGTTATGCGG+TGG | - | chr5.3:10343330-10343349 | MS.gene047684:intron | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5.3:10341275-10341294 | None:intergenic | 55.0% | |
| TTTGAGGGGCGGAATCCTGT+AGG | + | chr5.3:10345315-10345334 | None:intergenic | 55.0% | |
| !! | TGGGGCATGGTGTTGGTACA+AGG | - | chr5.3:10341275-10341294 | MS.gene047684:CDS | 55.0% |
| AGGGCGCGCGAGTAACACAT+AGG | + | chr5.3:10344860-10344879 | None:intergenic | 60.0% | |
| CAAATCTGAAGGACCGGCCC+TGG | + | chr5.3:10342614-10342633 | None:intergenic | 60.0% | |
| CAGGGCCGGTCCTTCAGATT+TGG | - | chr5.3:10342612-10342631 | MS.gene047684:intron | 60.0% | |
| CGCGCGAGTAACACATAGGG+TGG | + | chr5.3:10344856-10344875 | None:intergenic | 60.0% | |
| CTAGCTCCGCCATTGCGTAC+AGG | + | chr5.3:10341716-10341735 | None:intergenic | 60.0% | |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5.3:10341268-10341287 | MS.gene047684:CDS | 60.0% | |
| GGGCGCGCGAGTAACACATA+GGG | + | chr5.3:10344859-10344878 | None:intergenic | 60.0% | |
| GTAACAAGGCAAGCCAGGGC+CGG | - | chr5.3:10342598-10342617 | MS.gene047684:intron | 60.0% | |
| ! | CTGTACGCAATGGCGGAGCT+AGG | - | chr5.3:10341714-10341733 | MS.gene047684:CDS | 60.0% |
| CTTAGGGGTGGCCCTGAGCA+CGG | + | chr5.3:10343290-10343309 | None:intergenic | 65.0% | |
| TTAGGGGTGGCCCTGAGCAC+GGG | + | chr5.3:10343289-10343308 | None:intergenic | 65.0% | |
| CGTGCTCAGGGCCACCCCTA+AGG | - | chr5.3:10343288-10343307 | MS.gene047684:intron | 70.0% | |
| TGGCCCTGAGCACGGGCCGA+GGG | + | chr5.3:10343282-10343301 | None:intergenic | 75.0% | |
| ! | CTGAGCACGGGCCGAGGGGG+CGG | + | chr5.3:10343277-10343296 | None:intergenic | 80.0% |
| ! | GCACTGGGCTGCCGCCCCCT+CGG | - | chr5.3:10343263-10343282 | MS.gene047684:intron | 80.0% |
| ! | GCCCCCTCGGCCCGTGCTCA+GGG | - | chr5.3:10343276-10343295 | MS.gene047684:intron | 80.0% |
| ! | GCCCTGAGCACGGGCCGAGG+GGG | + | chr5.3:10343280-10343299 | None:intergenic | 80.0% |
| ! | GGCCCTGAGCACGGGCCGAG+GGG | + | chr5.3:10343281-10343300 | None:intergenic | 80.0% |
| ! | GTGGCCCTGAGCACGGGCCG+AGG | + | chr5.3:10343283-10343302 | None:intergenic | 80.0% |
| ! | CGCCCCCTCGGCCCGTGCTC+AGG | - | chr5.3:10343275-10343294 | MS.gene047684:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 10341225 | 10346277 | 10341225 | ID=MS.gene047684 |
| chr5.3 | mRNA | 10341225 | 10346277 | 10341225 | ID=MS.gene047684.t1;Parent=MS.gene047684 |
| chr5.3 | exon | 10345909 | 10346277 | 10345909 | ID=MS.gene047684.t1.exon1;Parent=MS.gene047684.t1 |
| chr5.3 | CDS | 10345909 | 10346277 | 10345909 | ID=cds.MS.gene047684.t1;Parent=MS.gene047684.t1 |
| chr5.3 | exon | 10341653 | 10341784 | 10341653 | ID=MS.gene047684.t1.exon2;Parent=MS.gene047684.t1 |
| chr5.3 | CDS | 10341653 | 10341784 | 10341653 | ID=cds.MS.gene047684.t1;Parent=MS.gene047684.t1 |
| chr5.3 | exon | 10341225 | 10341512 | 10341225 | ID=MS.gene047684.t1.exon3;Parent=MS.gene047684.t1 |
| chr5.3 | CDS | 10341225 | 10341512 | 10341225 | ID=cds.MS.gene047684.t1;Parent=MS.gene047684.t1 |
| Gene Sequence |
| Protein sequence |
