Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047685.t1 | XP_003611828.1 | 92 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 6.80E-138 | 500 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047685.t1 | A2WYS8 | 44.6 | 258 | 140 | 2 | 7 | 262 | 6 | 262 | 2.2e-60 | 233.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047685.t1 | G7K9E3 | 92.0 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 4.9e-138 | 500.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047685 | MS.gene041151 | PPI |
| MS.gene047685 | MS.gene44962 | PPI |
| MS.gene87350 | MS.gene047685 | PPI |
| MS.gene047685 | MS.gene011884 | PPI |
| MS.gene047685 | MS.gene047689 | PPI |
| MS.gene047685 | MS.gene010412 | PPI |
| MS.gene28543 | MS.gene047685 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047685.t1 | MTR_5g018300 | 92.015 | 263 | 21 | 0 | 1 | 263 | 1 | 263 | 0.0 | 514 |
| MS.gene047685.t1 | MTR_5g018280 | 86.312 | 263 | 35 | 1 | 1 | 263 | 1 | 262 | 4.87e-171 | 473 |
| MS.gene047685.t1 | MTR_5g018320 | 85.547 | 256 | 37 | 0 | 8 | 263 | 5 | 260 | 2.12e-170 | 471 |
| MS.gene047685.t1 | MTR_8g007675 | 55.078 | 256 | 113 | 2 | 8 | 262 | 32 | 286 | 4.19e-99 | 291 |
| MS.gene047685.t1 | MTR_8g008500 | 53.846 | 260 | 115 | 4 | 7 | 262 | 26 | 284 | 1.18e-94 | 280 |
| MS.gene047685.t1 | MTR_8g008660 | 50.584 | 257 | 122 | 3 | 7 | 262 | 26 | 278 | 1.08e-90 | 270 |
| MS.gene047685.t1 | MTR_8g008505 | 50.584 | 257 | 124 | 3 | 7 | 262 | 27 | 281 | 3.41e-90 | 268 |
| MS.gene047685.t1 | MTR_3g464040 | 49.416 | 257 | 125 | 3 | 7 | 262 | 18 | 270 | 1.93e-87 | 261 |
| MS.gene047685.t1 | MTR_8g007670 | 47.104 | 259 | 134 | 3 | 6 | 262 | 5 | 262 | 2.47e-82 | 248 |
| MS.gene047685.t1 | MTR_8g079120 | 42.697 | 267 | 141 | 4 | 1 | 262 | 1 | 260 | 4.95e-75 | 229 |
| MS.gene047685.t1 | MTR_8g007670 | 41.313 | 259 | 105 | 3 | 6 | 262 | 5 | 218 | 4.09e-66 | 205 |
| MS.gene047685.t1 | MTR_5g018350 | 38.846 | 260 | 148 | 4 | 6 | 262 | 5 | 256 | 3.24e-61 | 194 |
| MS.gene047685.t1 | MTR_5g018365 | 39.382 | 259 | 148 | 3 | 6 | 262 | 10 | 261 | 3.83e-60 | 191 |
| MS.gene047685.t1 | MTR_7g015220 | 36.508 | 252 | 156 | 2 | 8 | 259 | 124 | 371 | 6.03e-50 | 168 |
| MS.gene047685.t1 | MTR_8g079120 | 43.931 | 173 | 87 | 3 | 1 | 168 | 43 | 210 | 5.58e-49 | 161 |
| MS.gene047685.t1 | MTR_3g005410 | 33.071 | 254 | 165 | 3 | 7 | 259 | 93 | 342 | 1.50e-45 | 156 |
| MS.gene047685.t1 | MTR_5g068100 | 34.866 | 261 | 164 | 2 | 3 | 262 | 25 | 280 | 2.42e-45 | 154 |
| MS.gene047685.t1 | MTR_3g093730 | 35.294 | 255 | 158 | 3 | 6 | 259 | 34 | 282 | 5.54e-42 | 145 |
| MS.gene047685.t1 | MTR_3g093730 | 31.890 | 254 | 123 | 5 | 6 | 259 | 34 | 237 | 1.54e-32 | 119 |
| MS.gene047685.t1 | MTR_5g008130 | 40.506 | 79 | 46 | 1 | 185 | 262 | 2 | 80 | 3.80e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047685.t1 | AT2G23610 | 44.318 | 264 | 136 | 5 | 4 | 262 | 5 | 262 | 3.68e-76 | 232 |
| MS.gene047685.t1 | AT2G23620 | 43.023 | 258 | 144 | 2 | 6 | 262 | 7 | 262 | 4.86e-74 | 227 |
| MS.gene047685.t1 | AT2G23560 | 44.569 | 267 | 135 | 6 | 1 | 262 | 1 | 259 | 3.98e-73 | 224 |
| MS.gene047685.t1 | AT3G50440 | 42.188 | 256 | 143 | 3 | 9 | 262 | 22 | 274 | 2.34e-71 | 220 |
| MS.gene047685.t1 | AT2G23600 | 41.221 | 262 | 143 | 5 | 6 | 262 | 7 | 262 | 1.01e-68 | 213 |
| MS.gene047685.t1 | AT2G23600 | 41.221 | 262 | 143 | 5 | 6 | 262 | 22 | 277 | 1.61e-68 | 213 |
| MS.gene047685.t1 | AT4G37150 | 42.045 | 264 | 135 | 6 | 7 | 262 | 2 | 255 | 1.25e-67 | 210 |
| MS.gene047685.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 8 | 269 | 6.44e-67 | 209 |
| MS.gene047685.t1 | AT2G23580 | 42.697 | 267 | 143 | 5 | 1 | 262 | 1 | 262 | 6.93e-67 | 208 |
| MS.gene047685.t1 | AT2G23550 | 43.446 | 267 | 141 | 5 | 1 | 262 | 1 | 262 | 8.03e-67 | 208 |
| MS.gene047685.t1 | AT2G23590 | 38.372 | 258 | 149 | 2 | 5 | 262 | 24 | 271 | 2.24e-63 | 200 |
| MS.gene047685.t1 | AT2G23610 | 39.615 | 260 | 109 | 5 | 4 | 262 | 5 | 217 | 1.39e-60 | 191 |
| MS.gene047685.t1 | AT5G10300 | 37.358 | 265 | 151 | 5 | 4 | 262 | 2 | 257 | 1.03e-55 | 180 |
| MS.gene047685.t1 | AT2G23550 | 38.346 | 266 | 127 | 5 | 1 | 262 | 1 | 233 | 5.98e-51 | 167 |
| MS.gene047685.t1 | AT1G26360 | 35.409 | 257 | 161 | 2 | 3 | 259 | 185 | 436 | 1.07e-48 | 167 |
| MS.gene047685.t1 | AT5G58310 | 33.840 | 263 | 162 | 4 | 6 | 261 | 3 | 260 | 8.62e-48 | 159 |
| MS.gene047685.t1 | AT3G29770 | 35.968 | 253 | 158 | 2 | 7 | 259 | 137 | 385 | 1.98e-47 | 162 |
| MS.gene047685.t1 | AT2G23600 | 44.048 | 168 | 85 | 4 | 6 | 168 | 22 | 185 | 5.49e-45 | 150 |
| MS.gene047685.t1 | AT1G33990 | 32.812 | 256 | 167 | 3 | 5 | 259 | 94 | 345 | 5.66e-45 | 155 |
| MS.gene047685.t1 | AT4G16690 | 35.156 | 256 | 144 | 4 | 8 | 255 | 12 | 253 | 9.24e-45 | 152 |
| MS.gene047685.t1 | AT1G69240 | 34.483 | 261 | 158 | 5 | 4 | 259 | 184 | 436 | 2.18e-44 | 155 |
| MS.gene047685.t1 | AT4G09900 | 31.102 | 254 | 170 | 3 | 7 | 259 | 97 | 346 | 2.85e-44 | 153 |
| MS.gene047685.t1 | AT2G23580 | 45.614 | 171 | 85 | 4 | 1 | 166 | 1 | 168 | 1.09e-43 | 147 |
| MS.gene047685.t1 | AT2G23550 | 47.368 | 171 | 82 | 4 | 1 | 166 | 8 | 175 | 5.65e-43 | 145 |
| MS.gene047685.t1 | AT3G10870 | 34.387 | 253 | 163 | 3 | 8 | 259 | 20 | 270 | 1.52e-41 | 144 |
| MS.gene047685.t1 | AT4G37140 | 52.381 | 105 | 50 | 0 | 7 | 111 | 2 | 106 | 1.17e-39 | 134 |
| MS.gene047685.t1 | AT5G10300 | 41.618 | 173 | 88 | 4 | 4 | 170 | 2 | 167 | 2.51e-39 | 136 |
| MS.gene047685.t1 | AT2G23570 | 40.659 | 182 | 101 | 4 | 84 | 262 | 1 | 178 | 1.45e-33 | 120 |
| MS.gene047685.t1 | AT4G37140 | 50.549 | 91 | 45 | 0 | 7 | 97 | 2 | 92 | 8.88e-32 | 113 |
| MS.gene047685.t1 | AT3G29770 | 41.667 | 72 | 42 | 0 | 8 | 79 | 138 | 209 | 8.04e-16 | 75.9 |
Find 59 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATGGTTCCATGTTATT+TGG | 0.107480 | 5.3:-10359225 | MS.gene047685:CDS |
| AACCGTTGATTGAATTTCTA+AGG | 0.235120 | 5.3:-10361646 | MS.gene047685:CDS |
| GAACCATTTGGTTTATCATT+TGG | 0.243454 | 5.3:+10359237 | None:intergenic |
| AACCATTTGGTTTATCATTT+GGG | 0.271934 | 5.3:+10359238 | None:intergenic |
| GATCTAACACTTTGTCTTGT+TGG | 0.315435 | 5.3:+10358898 | None:intergenic |
| ACACTAGACATGGCTGCTTC+TGG | 0.317496 | 5.3:-10361719 | MS.gene047685:CDS |
| AGACATTTCGTGTTGATTCA+TGG | 0.318093 | 5.3:-10361812 | MS.gene047685:CDS |
| CCAAATAACATGGAACCATT+TGG | 0.347623 | 5.3:+10359225 | None:intergenic |
| TCCAGCTCATGCACTTGCTT+TGG | 0.361365 | 5.3:+10361689 | None:intergenic |
| AGATATGCACAAAGCTCTTT+CGG | 0.381008 | 5.3:+10358786 | None:intergenic |
| CAGCTTGGACACAAAGATTA+CGG | 0.386498 | 5.3:-10359271 | MS.gene047685:CDS |
| GCTCATGCACTTGCTTTGGA+TGG | 0.400690 | 5.3:+10361693 | None:intergenic |
| GTTACTTTGTTAAAATCTGC+TGG | 0.420158 | 5.3:-10361755 | MS.gene047685:CDS |
| CCCTTGCATTGTCATTACTA+AGG | 0.446862 | 5.3:-10359016 | MS.gene047685:CDS |
| CTTGCCATGGGGCATGGTGT+TGG | 0.464715 | 5.3:-10361787 | MS.gene047685:CDS |
| ATCACTTTGACATCATTAGC+AGG | 0.471584 | 5.3:+10358843 | None:intergenic |
| AGACTCAAGAAGCTTACATC+AGG | 0.478617 | 5.3:+10361494 | None:intergenic |
| CGTAATCTTTGTGTCCAAGC+TGG | 0.484193 | 5.3:+10359272 | None:intergenic |
| CTAAGGCCTGCTAGGAGCTA+TGG | 0.487770 | 5.3:-10358999 | MS.gene047685:CDS |
| AGCCCAAATGATAAACCAAA+TGG | 0.499816 | 5.3:-10359240 | MS.gene047685:CDS |
| TGGGGCATGGTGTTGGTACA+AGG | 0.499948 | 5.3:-10361780 | MS.gene047685:CDS |
| TTGGCACACAATGAACACTT+TGG | 0.501510 | 5.3:+10358917 | None:intergenic |
| TTGATTCATGGATCTTGCCA+TGG | 0.506866 | 5.3:-10361800 | MS.gene047685:CDS |
| ACCTTGGTTGCTAAGAATTG+TGG | 0.511072 | 5.3:+10359201 | None:intergenic |
| TGTCATTACTAAGGCCTGCT+AGG | 0.517957 | 5.3:-10359007 | MS.gene047685:CDS |
| AGGATAACTCTTTGCTCTTG+TGG | 0.521619 | 5.3:+10361617 | None:intergenic |
| GCCTTAGTAATGACAATGCA+AGG | 0.522441 | 5.3:+10359015 | None:intergenic |
| ATGGATCTTGCCATGGGGCA+TGG | 0.523884 | 5.3:-10361793 | MS.gene047685:CDS |
| TGATTCATGGATCTTGCCAT+GGG | 0.528952 | 5.3:-10361799 | MS.gene047685:CDS |
| ATCCTAGTGGGTCATAGCTT+AGG | 0.529106 | 5.3:-10361599 | MS.gene047685:CDS |
| TCCAAAGCAAGTGCATGAGC+TGG | 0.530609 | 5.3:-10361690 | MS.gene047685:CDS |
| TTTGTTAGGAAATGATTCCA+TGG | 0.534349 | 5.3:+10361556 | None:intergenic |
| GACCTTAGAAATTCAATCAA+CGG | 0.539220 | 5.3:+10361644 | None:intergenic |
| TCATCACCATAGCTCCTAGC+AGG | 0.541402 | 5.3:+10358993 | None:intergenic |
| GTAATGACAATGCAAGGGAC+AGG | 0.570287 | 5.3:+10359021 | None:intergenic |
| CTAGTGGGTCATAGCTTAGG+TGG | 0.571744 | 5.3:-10361596 | MS.gene047685:CDS |
| ACAAAGAATTGATTCCAGCT+TGG | 0.573694 | 5.3:-10359286 | MS.gene047685:CDS |
| CGAAGTCACAACACTAGACA+TGG | 0.578644 | 5.3:-10361729 | MS.gene047685:CDS |
| ACACTTTGGCAACAGTTCCA+TGG | 0.579867 | 5.3:+10358931 | None:intergenic |
| GATGTGTATATCTGTGGCCA+TGG | 0.581135 | 5.3:-10361573 | MS.gene047685:CDS |
| TGGAGATAGTTGATACACCT+TGG | 0.589354 | 5.3:+10359185 | None:intergenic |
| GAGCAAAGAGTTATCCTAGT+GGG | 0.595319 | 5.3:-10361611 | MS.gene047685:CDS |
| TCACTTTGACATCATTAGCA+GGG | 0.599089 | 5.3:+10358844 | None:intergenic |
| ATAAGCCAGCATACCTCAGG+TGG | 0.609961 | 5.3:+10359165 | None:intergenic |
| AAGAAGCTTACATCAGGAGA+AGG | 0.612458 | 5.3:+10361500 | None:intergenic |
| CTTCTTGAGTCTACTCCAAG+AGG | 0.623407 | 5.3:-10361483 | MS.gene047685:intron |
| TCTTTCGGTTTAGAGAACAT+AGG | 0.623701 | 5.3:+10358801 | None:intergenic |
| AGGTGGGATGTGTATATCTG+TGG | 0.625917 | 5.3:-10361579 | MS.gene047685:CDS |
| GAATTGTGGTCCAAATAACA+TGG | 0.628245 | 5.3:+10359215 | None:intergenic |
| CACCTAAGCTATGACCCACT+AGG | 0.629760 | 5.3:+10361597 | None:intergenic |
| TAGTGGGTCATAGCTTAGGT+GGG | 0.639168 | 5.3:-10361595 | MS.gene047685:CDS |
| TGTACCAACACCATGCCCCA+TGG | 0.644751 | 5.3:+10361783 | None:intergenic |
| GTTTAGAGAACATAGGCATG+TGG | 0.663433 | 5.3:+10358808 | None:intergenic |
| CCTTAGTAATGACAATGCAA+GGG | 0.667410 | 5.3:+10359016 | None:intergenic |
| AGAGTCACAAAAGATAACCA+TGG | 0.671797 | 5.3:-10358948 | MS.gene047685:CDS |
| ACCACAATTCTTAGCAACCA+AGG | 0.672825 | 5.3:-10359202 | MS.gene047685:CDS |
| GATTCATGGATCTTGCCATG+GGG | 0.682835 | 5.3:-10361798 | MS.gene047685:CDS |
| GTATCAACTATCTCCACCTG+AGG | 0.688226 | 5.3:-10359178 | MS.gene047685:intron |
| AGAGCAAAGAGTTATCCTAG+TGG | 0.738096 | 5.3:-10361612 | MS.gene047685:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAATTAAGAAAATTAA+TGG | - | chr5.3:10359387-10359406 | MS.gene047685:intron | 10.0% |
| !!! | TTTTTCTTTTTTCTTTTTTA+AGG | - | chr5.3:10360427-10360446 | MS.gene047685:intron | 10.0% |
| !!! | TTTTTTTATTCTTTTTTGTT+TGG | + | chr5.3:10359326-10359345 | None:intergenic | 10.0% |
| !! | AAAAAAATCCGTATAATAAA+TGG | - | chr5.3:10359339-10359358 | MS.gene047685:intron | 15.0% |
| !! | AAAAAATCCGTATAATAAAT+GGG | - | chr5.3:10359340-10359359 | MS.gene047685:intron | 15.0% |
| !! | AAAAGTGATACTTTAAATTT+GGG | - | chr5.3:10361085-10361104 | MS.gene047685:intron | 15.0% |
| !! | CCAAATAATAAATATGTATA+TGG | + | chr5.3:10360943-10360962 | None:intergenic | 15.0% |
| !! | CCATATACATATTTATTATT+TGG | - | chr5.3:10360940-10360959 | MS.gene047685:intron | 15.0% |
| !!! | CAAAGAATTTAAAAGTATTT+TGG | + | chr5.3:10361494-10361513 | None:intergenic | 15.0% |
| !!! | TTTCAATATATATATTGACT+TGG | + | chr5.3:10360899-10360918 | None:intergenic | 15.0% |
| !! | AAAGTGATACTTTAAATTTG+GGG | - | chr5.3:10361086-10361105 | MS.gene047685:intron | 20.0% |
| !! | AACAGTAATTGAAGAAAATA+CGG | + | chr5.3:10361251-10361270 | None:intergenic | 20.0% |
| !! | ATTATCAATTTGTGAAAGTT+TGG | - | chr5.3:10361116-10361135 | MS.gene047685:intron | 20.0% |
| !! | CAAAAGTGATACTTTAAATT+TGG | - | chr5.3:10361084-10361103 | MS.gene047685:intron | 20.0% |
| !! | CTATTTGTAATAAGATCTAT+CGG | - | chr5.3:10360062-10360081 | MS.gene047685:intron | 20.0% |
| !! | TAAATAGTTATCATCAACTT+TGG | - | chr5.3:10359169-10359188 | MS.gene047685:intron | 20.0% |
| !! | TTATCAATTTGTGAAAGTTT+GGG | - | chr5.3:10361117-10361136 | MS.gene047685:intron | 20.0% |
| !!! | AAAGTAATTTTGACTAAAAG+TGG | - | chr5.3:10359834-10359853 | MS.gene047685:intron | 20.0% |
| !!! | AAGTGTTATTTTGAAAGTTT+TGG | + | chr5.3:10360823-10360842 | None:intergenic | 20.0% |
| !!! | AGTGTTATTTTGAAAGTTTT+GGG | + | chr5.3:10360822-10360841 | None:intergenic | 20.0% |
| !!! | CAAATTTAAAGTATCACTTT+TGG | + | chr5.3:10361086-10361105 | None:intergenic | 20.0% |
| !!! | CTTATACAAACAAGTAATTT+TGG | - | chr5.3:10360988-10361007 | MS.gene047685:intron | 20.0% |
| !!! | GGTGTATTGTAATTTTTTTT+GGG | + | chr5.3:10361162-10361181 | None:intergenic | 20.0% |
| !!! | TGCCTTTTTTTTTAACTATA+CGG | - | chr5.3:10360653-10360672 | MS.gene047685:intron | 20.0% |
| ! | AAAATGCTTATATATGAACC+AGG | - | chr5.3:10361543-10361562 | MS.gene047685:CDS | 25.0% |
| ! | AACAAAAATAATAAAGGGAG+AGG | + | chr5.3:10360130-10360149 | None:intergenic | 25.0% |
| ! | AAGTGATACTTTAAATTTGG+GGG | - | chr5.3:10361087-10361106 | MS.gene047685:intron | 25.0% |
| ! | ACATGAGAAAGATCAAAATA+AGG | + | chr5.3:10359142-10359161 | None:intergenic | 25.0% |
| ! | CAATGTCATAAGAAATTGAA+TGG | - | chr5.3:10360194-10360213 | MS.gene047685:intron | 25.0% |
| ! | CACCGTATAGTTAAAAAAAA+AGG | + | chr5.3:10360658-10360677 | None:intergenic | 25.0% |
| ! | CGATAGATCTTATTACAAAT+AGG | + | chr5.3:10360064-10360083 | None:intergenic | 25.0% |
| ! | TATCAATTTGTGAAAGTTTG+GGG | - | chr5.3:10361118-10361137 | MS.gene047685:intron | 25.0% |
| ! | TCATTTATCTCTATCACAAA+CGG | - | chr5.3:10360169-10360188 | MS.gene047685:intron | 25.0% |
| ! | TGTTTGTTTGTTTATAGTCA+AGG | - | chr5.3:10360329-10360348 | MS.gene047685:intron | 25.0% |
| ! | TTAAAAATGAAGATACAGAG+TGG | - | chr5.3:10360627-10360646 | MS.gene047685:intron | 25.0% |
| ! | TTACTTGTTTGTATAAGTTG+AGG | + | chr5.3:10360985-10361004 | None:intergenic | 25.0% |
| !! | AACCATTTGGTTTATCATTT+GGG | + | chr5.3:10361353-10361372 | None:intergenic | 25.0% |
| !! | TACTTGTTTGTATAAGTTGA+GGG | + | chr5.3:10360984-10361003 | None:intergenic | 25.0% |
| !!! | ATAATGGATTGTAGAATGTT+TGG | + | chr5.3:10359982-10360001 | None:intergenic | 25.0% |
| !!! | GAGGATTCTTTATTTTATGA+TGG | + | chr5.3:10359570-10359589 | None:intergenic | 25.0% |
| !!! | GGGTGTATTGTAATTTTTTT+TGG | + | chr5.3:10361163-10361182 | None:intergenic | 25.0% |
| !!! | GGTTGCTTTCAATTTTTTAT+AGG | + | chr5.3:10361230-10361249 | None:intergenic | 25.0% |
| !!! | GTGTTATTTTGAAAGTTTTG+GGG | + | chr5.3:10360821-10360840 | None:intergenic | 25.0% |
| AAGAATCCTCCAATCTTAAT+CGG | - | chr5.3:10359580-10359599 | MS.gene047685:intron | 30.0% | |
| AAGTTTAGACTCAAATCACA+CGG | - | chr5.3:10361185-10361204 | MS.gene047685:intron | 30.0% | |
| AGCATCATTTAACCTAATGT+CGG | + | chr5.3:10360764-10360783 | None:intergenic | 30.0% | |
| ATCAATTTGTGAAAGTTTGG+GGG | - | chr5.3:10361119-10361138 | MS.gene047685:intron | 30.0% | |
| ATCCTTGCCCATTTATTATA+CGG | + | chr5.3:10359350-10359369 | None:intergenic | 30.0% | |
| ATTGTTTATTGCCTCATTAG+AGG | + | chr5.3:10360098-10360117 | None:intergenic | 30.0% | |
| ATTTATCTCTATCACAAACG+GGG | - | chr5.3:10360171-10360190 | MS.gene047685:intron | 30.0% | |
| CATTTATCTCTATCACAAAC+GGG | - | chr5.3:10360170-10360189 | MS.gene047685:intron | 30.0% | |
| GACCTTAGAAATTCAATCAA+CGG | + | chr5.3:10358947-10358966 | None:intergenic | 30.0% | |
| GTGATTTGAGTCTAAACTTA+GGG | + | chr5.3:10361184-10361203 | None:intergenic | 30.0% | |
| TCATAAGAAATTGAATGGTG+AGG | - | chr5.3:10360199-10360218 | MS.gene047685:intron | 30.0% | |
| TCTAATGAGGCAATAAACAA+TGG | - | chr5.3:10360097-10360116 | MS.gene047685:intron | 30.0% | |
| TGATTTGAGTCTAAACTTAG+GGG | + | chr5.3:10361183-10361202 | None:intergenic | 30.0% | |
| TGCTTTGTCAAAATCAGTTA+GGG | - | chr5.3:10361026-10361045 | MS.gene047685:intron | 30.0% | |
| TGTGATTTGAGTCTAAACTT+AGG | + | chr5.3:10361185-10361204 | None:intergenic | 30.0% | |
| TTGCTTTGTCAAAATCAGTT+AGG | - | chr5.3:10361025-10361044 | MS.gene047685:intron | 30.0% | |
| TTTGTTAGGAAATGATTCCA+TGG | + | chr5.3:10359035-10359054 | None:intergenic | 30.0% | |
| ! | AACCGTTGATTGAATTTCTA+AGG | - | chr5.3:10358942-10358961 | MS.gene047685:CDS | 30.0% |
| ! | ATGCAGCTTGCTTTAAATAA+TGG | + | chr5.3:10359998-10360017 | None:intergenic | 30.0% |
| ! | ATTTGAGATACGTTCTTCAT+GGG | + | chr5.3:10360277-10360296 | None:intergenic | 30.0% |
| ! | CACCATAATTTAAAACGTGA+AGG | - | chr5.3:10360565-10360584 | MS.gene047685:intron | 30.0% |
| ! | CTTTTACAAACCGACAATTT+TGG | - | chr5.3:10360795-10360814 | MS.gene047685:intron | 30.0% |
| ! | GAACCATTTGGTTTATCATT+TGG | + | chr5.3:10361354-10361373 | None:intergenic | 30.0% |
| ! | GTTACTTTGTTAAAATCTGC+TGG | - | chr5.3:10358833-10358852 | MS.gene047685:CDS | 30.0% |
| ! | TGACAAAGCAAACACAATTT+TGG | + | chr5.3:10361016-10361035 | None:intergenic | 30.0% |
| !! | AGCTAGCTTAATTTTTACGA+AGG | + | chr5.3:10360541-10360560 | None:intergenic | 30.0% |
| !! | ATTGTCGGTTTGTAAAAGTA+AGG | + | chr5.3:10360793-10360812 | None:intergenic | 30.0% |
| !! | CTTCACGTTTTAAATTATGG+TGG | + | chr5.3:10360567-10360586 | None:intergenic | 30.0% |
| !! | GTCCTTCACGTTTTAAATTA+TGG | + | chr5.3:10360570-10360589 | None:intergenic | 30.0% |
| !! | TGACTTGGTCAAAATTAAGA+GGG | + | chr5.3:10360884-10360903 | None:intergenic | 30.0% |
| !! | TTGACTTGGTCAAAATTAAG+AGG | + | chr5.3:10360885-10360904 | None:intergenic | 30.0% |
| !! | TTGTCGGTTTGTAAAAGTAA+GGG | + | chr5.3:10360792-10360811 | None:intergenic | 30.0% |
| !! | TTTGGGTTAAATTGCACTTT+TGG | + | chr5.3:10361145-10361164 | None:intergenic | 30.0% |
| !!! | ACCTTCATTTTTTTCACTCA+AGG | + | chr5.3:10360036-10360055 | None:intergenic | 30.0% |
| !!! | CCTTCATTTTTTTCACTCAA+GGG | + | chr5.3:10360035-10360054 | None:intergenic | 30.0% |
| AAGGATAATCAAGTACCTCT+TGG | + | chr5.3:10359123-10359142 | None:intergenic | 35.0% | |
| ACAATGATGAAACCGACATT+AGG | - | chr5.3:10360749-10360768 | MS.gene047685:intron | 35.0% | |
| AGAGTCACAAAAGATAACCA+TGG | - | chr5.3:10361640-10361659 | MS.gene047685:CDS | 35.0% | |
| AGATATGCACAAAGCTCTTT+CGG | + | chr5.3:10361805-10361824 | None:intergenic | 35.0% | |
| AGCCCAAATGATAAACCAAA+TGG | - | chr5.3:10361348-10361367 | MS.gene047685:intron | 35.0% | |
| ATCACTTTGACATCATTAGC+AGG | + | chr5.3:10361748-10361767 | None:intergenic | 35.0% | |
| ATCCGTATAATAAATGGGCA+AGG | - | chr5.3:10359345-10359364 | MS.gene047685:intron | 35.0% | |
| ATCGGACAACTAGAAATCTT+TGG | - | chr5.3:10359598-10359617 | MS.gene047685:intron | 35.0% | |
| ATTGTGAAGCTCTTCTTTAG+TGG | - | chr5.3:10360464-10360483 | MS.gene047685:intron | 35.0% | |
| CATTACATACACTTGAGACA+TGG | + | chr5.3:10360371-10360390 | None:intergenic | 35.0% | |
| CCAAATAACATGGAACCATT+TGG | + | chr5.3:10361366-10361385 | None:intergenic | 35.0% | |
| CCAAATGGTTCCATGTTATT+TGG | - | chr5.3:10361363-10361382 | MS.gene047685:intron | 35.0% | |
| CCCTTGAGTGAAAAAAATGA+AGG | - | chr5.3:10360032-10360051 | MS.gene047685:intron | 35.0% | |
| CCTTAGTAATGACAATGCAA+GGG | + | chr5.3:10361575-10361594 | None:intergenic | 35.0% | |
| GAATTGTGGTCCAAATAACA+TGG | + | chr5.3:10361376-10361395 | None:intergenic | 35.0% | |
| GACAACTAGAAATCTTTGGA+AGG | - | chr5.3:10359602-10359621 | MS.gene047685:intron | 35.0% | |
| GATCTAACACTTTGTCTTGT+TGG | + | chr5.3:10361693-10361712 | None:intergenic | 35.0% | |
| TAGATGACGTGTTAGTGATA+AGG | - | chr5.3:10359734-10359753 | MS.gene047685:intron | 35.0% | |
| TATGTGACAATTTATCGTCG+TGG | - | chr5.3:10359762-10359781 | MS.gene047685:intron | 35.0% | |
| TCACTTTGACATCATTAGCA+GGG | + | chr5.3:10361747-10361766 | None:intergenic | 35.0% | |
| TCTAGTTGTCCGATTAAGAT+TGG | + | chr5.3:10359592-10359611 | None:intergenic | 35.0% | |
| TCTTTCGGTTTAGAGAACAT+AGG | + | chr5.3:10361790-10361809 | None:intergenic | 35.0% | |
| TTTGCAAAAGAGGCTAAAGT+TGG | + | chr5.3:10360853-10360872 | None:intergenic | 35.0% | |
| ! | ACAAAGAATTGATTCCAGCT+TGG | - | chr5.3:10361302-10361321 | MS.gene047685:intron | 35.0% |
| ! | ACTGAATTACTCGCTTTAGA+AGG | - | chr5.3:10359516-10359535 | MS.gene047685:intron | 35.0% |
| ! | CACTCATGTGATATTTTCGT+TGG | + | chr5.3:10360246-10360265 | None:intergenic | 35.0% |
| ! | GATTTGAGATACGTTCTTCA+TGG | + | chr5.3:10360278-10360297 | None:intergenic | 35.0% |
| ! | GGATAACACTTTTGCAAAAG+AGG | + | chr5.3:10360863-10360882 | None:intergenic | 35.0% |
| ! | TCATGTGATATTTTCGTTGG+AGG | + | chr5.3:10360243-10360262 | None:intergenic | 35.0% |
| !! | AGACATTTCGTGTTGATTCA+TGG | - | chr5.3:10358776-10358795 | MS.gene047685:CDS | 35.0% |
| !! | CACGTTTTAAATTATGGTGG+TGG | + | chr5.3:10360564-10360583 | None:intergenic | 35.0% |
| !! | CTGAATTACTCGCTTTAGAA+GGG | - | chr5.3:10359517-10359536 | MS.gene047685:intron | 35.0% |
| !!! | CATTTTTTTCACTCAAGGGT+AGG | + | chr5.3:10360031-10360050 | None:intergenic | 35.0% |
| AAGAAGCTTACATCAGGAGA+AGG | + | chr5.3:10359091-10359110 | None:intergenic | 40.0% | |
| ACCACAATTCTTAGCAACCA+AGG | - | chr5.3:10361386-10361405 | MS.gene047685:intron | 40.0% | |
| ACCTTGGTTGCTAAGAATTG+TGG | + | chr5.3:10361390-10361409 | None:intergenic | 40.0% | |
| AGACTCAAGAAGCTTACATC+AGG | + | chr5.3:10359097-10359116 | None:intergenic | 40.0% | |
| AGAGCAAAGAGTTATCCTAG+TGG | - | chr5.3:10358976-10358995 | MS.gene047685:CDS | 40.0% | |
| AGGATAACTCTTTGCTCTTG+TGG | + | chr5.3:10358974-10358993 | None:intergenic | 40.0% | |
| AGTTGTCCGATTAAGATTGG+AGG | + | chr5.3:10359589-10359608 | None:intergenic | 40.0% | |
| CAGCTTGGACACAAAGATTA+CGG | - | chr5.3:10361317-10361336 | MS.gene047685:intron | 40.0% | |
| CCCTTGCATTGTCATTACTA+AGG | - | chr5.3:10361572-10361591 | MS.gene047685:CDS | 40.0% | |
| GAGCAAAGAGTTATCCTAGT+GGG | - | chr5.3:10358977-10358996 | MS.gene047685:CDS | 40.0% | |
| GCCTTAGTAATGACAATGCA+AGG | + | chr5.3:10361576-10361595 | None:intergenic | 40.0% | |
| GTGCTATGATTCCTCTAATG+AGG | - | chr5.3:10360084-10360103 | MS.gene047685:intron | 40.0% | |
| GTTTAGAGAACATAGGCATG+TGG | + | chr5.3:10361783-10361802 | None:intergenic | 40.0% | |
| TGATTCATGGATCTTGCCAT+GGG | - | chr5.3:10358789-10358808 | MS.gene047685:CDS | 40.0% | |
| TGTAACTCGTGTATCTAGTG+AGG | - | chr5.3:10359215-10359234 | MS.gene047685:CDS | 40.0% | |
| TTGATTCATGGATCTTGCCA+TGG | - | chr5.3:10358788-10358807 | MS.gene047685:CDS | 40.0% | |
| TTGGCACACAATGAACACTT+TGG | + | chr5.3:10361674-10361693 | None:intergenic | 40.0% | |
| ! | ACTGCAGCTGCAATTTTGTT+AGG | + | chr5.3:10359049-10359068 | None:intergenic | 40.0% |
| ! | TGGAGATAGTTGATACACCT+TGG | + | chr5.3:10361406-10361425 | None:intergenic | 40.0% |
| !!! | AGTTTTGGGGCCAAAATTGT+CGG | + | chr5.3:10360808-10360827 | None:intergenic | 40.0% |
| AACATAAGCCAGCATACCTC+AGG | + | chr5.3:10361429-10361448 | None:intergenic | 45.0% | |
| ACACTTTGGCAACAGTTCCA+TGG | + | chr5.3:10361660-10361679 | None:intergenic | 45.0% | |
| AGGTGGGATGTGTATATCTG+TGG | - | chr5.3:10359009-10359028 | MS.gene047685:CDS | 45.0% | |
| CGAAGTCACAACACTAGACA+TGG | - | chr5.3:10358859-10358878 | MS.gene047685:CDS | 45.0% | |
| CGTAATCTTTGTGTCCAAGC+TGG | + | chr5.3:10361319-10361338 | None:intergenic | 45.0% | |
| CTTCTTGAGTCTACTCCAAG+AGG | - | chr5.3:10359105-10359124 | MS.gene047685:intron | 45.0% | |
| GATGTGTATATCTGTGGCCA+TGG | - | chr5.3:10359015-10359034 | MS.gene047685:CDS | 45.0% | |
| GATTCATGGATCTTGCCATG+GGG | - | chr5.3:10358790-10358809 | MS.gene047685:CDS | 45.0% | |
| GTAATGACAATGCAAGGGAC+AGG | + | chr5.3:10361570-10361589 | None:intergenic | 45.0% | |
| GTATCAACTATCTCCACCTG+AGG | - | chr5.3:10361410-10361429 | MS.gene047685:intron | 45.0% | |
| TGGGCAAGGATCATCTAAAG+TGG | - | chr5.3:10359359-10359378 | MS.gene047685:intron | 45.0% | |
| TGTCATTACTAAGGCCTGCT+AGG | - | chr5.3:10361581-10361600 | MS.gene047685:CDS | 45.0% | |
| TTTACACAAGCGGCTAAAGC+TGG | - | chr5.3:10361056-10361075 | MS.gene047685:intron | 45.0% | |
| ! | ATCCTAGTGGGTCATAGCTT+AGG | - | chr5.3:10358989-10359008 | MS.gene047685:CDS | 45.0% |
| ! | TAGTGGGTCATAGCTTAGGT+GGG | - | chr5.3:10358993-10359012 | MS.gene047685:CDS | 45.0% |
| !!! | GGGCGTCATTTTTACACAAG+CGG | - | chr5.3:10361046-10361065 | MS.gene047685:intron | 45.0% |
| !! | AATTAAAAAATAATATAGTT+TGG | - | chr5.3:10359255-10359274 | MS.gene047685:CDS | 5.0% |
| !! | AATTATAACAAAAATAATAA+AGG | + | chr5.3:10360136-10360155 | None:intergenic | 5.0% |
| !! | ATCATTAATTAATATATTAA+AGG | + | chr5.3:10359468-10359487 | None:intergenic | 5.0% |
| !! | ATTAAAAAATAATATAGTTT+GGG | - | chr5.3:10359256-10359275 | MS.gene047685:CDS | 5.0% |
| !! | ATTATAACAAAAATAATAAA+GGG | + | chr5.3:10360135-10360154 | None:intergenic | 5.0% |
| ACACTAGACATGGCTGCTTC+TGG | - | chr5.3:10358869-10358888 | MS.gene047685:CDS | 50.0% | |
| ATAAGCCAGCATACCTCAGG+TGG | + | chr5.3:10361426-10361445 | None:intergenic | 50.0% | |
| CACCTAAGCTATGACCCACT+AGG | + | chr5.3:10358994-10359013 | None:intergenic | 50.0% | |
| TATCTCCACCTGAGGTATGC+TGG | - | chr5.3:10361418-10361437 | MS.gene047685:intron | 50.0% | |
| TCATCACCATAGCTCCTAGC+AGG | + | chr5.3:10361598-10361617 | None:intergenic | 50.0% | |
| TCCAAAGCAAGTGCATGAGC+TGG | - | chr5.3:10358898-10358917 | MS.gene047685:CDS | 50.0% | |
| TCCAGCTCATGCACTTGCTT+TGG | + | chr5.3:10358902-10358921 | None:intergenic | 50.0% | |
| ! | CTAGTGGGTCATAGCTTAGG+TGG | - | chr5.3:10358992-10359011 | MS.gene047685:CDS | 50.0% |
| ! | GCTCATGCACTTGCTTTGGA+TGG | + | chr5.3:10358898-10358917 | None:intergenic | 50.0% |
| ACAATGCAAGGGACAGGTCC+TGG | + | chr5.3:10361564-10361583 | None:intergenic | 55.0% | |
| ACACAAGCGGCTAAAGCTGG+TGG | - | chr5.3:10361059-10361078 | MS.gene047685:intron | 55.0% | |
| ATGGATCTTGCCATGGGGCA+TGG | - | chr5.3:10358795-10358814 | MS.gene047685:CDS | 55.0% | |
| CACAAGCGGCTAAAGCTGGT+GGG | - | chr5.3:10361060-10361079 | MS.gene047685:intron | 55.0% | |
| CTAAGGCCTGCTAGGAGCTA+TGG | - | chr5.3:10361589-10361608 | MS.gene047685:CDS | 55.0% | |
| TGTACCAACACCATGCCCCA+TGG | + | chr5.3:10358808-10358827 | None:intergenic | 55.0% | |
| !! | TGGGGCATGGTGTTGGTACA+AGG | - | chr5.3:10358808-10358827 | MS.gene047685:CDS | 55.0% |
| CTTGCCATGGGGCATGGTGT+TGG | - | chr5.3:10358801-10358820 | MS.gene047685:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 10358758 | 10361852 | 10358758 | ID=MS.gene047685 |
| chr5.3 | mRNA | 10358758 | 10361852 | 10358758 | ID=MS.gene047685.t1;Parent=MS.gene047685 |
| chr5.3 | exon | 10361484 | 10361852 | 10361484 | ID=MS.gene047685.t1.exon1;Parent=MS.gene047685.t1 |
| chr5.3 | CDS | 10361484 | 10361852 | 10361484 | ID=cds.MS.gene047685.t1;Parent=MS.gene047685.t1 |
| chr5.3 | exon | 10359179 | 10359313 | 10359179 | ID=MS.gene047685.t1.exon2;Parent=MS.gene047685.t1 |
| chr5.3 | CDS | 10359179 | 10359313 | 10359179 | ID=cds.MS.gene047685.t1;Parent=MS.gene047685.t1 |
| chr5.3 | exon | 10358758 | 10359045 | 10358758 | ID=MS.gene047685.t1.exon3;Parent=MS.gene047685.t1 |
| chr5.3 | CDS | 10358758 | 10359045 | 10358758 | ID=cds.MS.gene047685.t1;Parent=MS.gene047685.t1 |
| Gene Sequence |
| Protein sequence |
